#NEXUS 

Begin trees;  [Treefile saved Tue Oct 18 15:15:31 2011]
[!
>Data file = c:\treebase\combineh_48_mcic.nex
>Heuristic search settings:
>  Optimality criterion = parsimony
>    Character-status summary:
>      Of 2125 total characters:
>        2097 characters are of type 'unord'
>        1 character is of user-defined type "stepmatrix2060"
>        1 character is of user-defined type "stepmatrix2061"
>        1 character is of user-defined type "stepmatrix2062"
>        1 character is of user-defined type "stepmatrix2065"
>        1 character is of user-defined type "stepmatrix2068"
>        1 character is of user-defined type "stepmatrix2071"
>        1 character is of user-defined type "stepmatrix2073"
>        1 character is of user-defined type "stepmatrix2076"
>        1 character is of user-defined type "stepmatrix2077"
>        1 character is of user-defined type "stepmatrix2078"
>        1 character is of user-defined type "stepmatrix2079"
>        1 character is of user-defined type "stepmatrix2080"
>        1 character is of user-defined type "stepmatrix2081"
>        1 character is of user-defined type "stepmatrix2086"
>        1 character is of user-defined type "stepmatrix2087"
>        1 character is of user-defined type "stepmatrix2089"
>        1 character is of user-defined type "stepmatrix2090"
>        1 character is of user-defined type "stepmatrix2091"
>        1 character is of user-defined type "stepmatrix2094"
>        1 character is of user-defined type "stepmatrix2100"
>        1 character is of user-defined type "stepmatrix2102"
>        1 character is of user-defined type "stepmatrix2107"
>        1 character is of user-defined type "stepmatrix2109"
>        1 character is of user-defined type "stepmatrix2115"
>        1 character is of user-defined type "stepmatrix2118"
>        1 character is of user-defined type "stepmatrix2121"
>        1 character is of user-defined type "stepmatrix2124"
>        1 character is of user-defined type "stepmatrix2125"
>        All characters have equal weight
>        1774 characters are constant
>        157 variable characters are parsimony-uninformative
>        Number of parsimony-informative characters = 194
>    Gaps are treated as "missing"
>  Starting tree(s) obtained via stepwise addition
>  Addition sequence: random
>    Number of replicates = 10
>    Starting seed = 1771460528
>  Number of trees held at each step during stepwise addition = 1
>  Branch-swapping algorithm: tree-bisection-reconnection (TBR)
>  Steepest descent option not in effect
>  'MaxTrees' setting = 10000 (will not be increased)
>  Branches collapsed (creating polytomies) if maximum branch length is zero
>  'MulTrees' option in effect
>  Topological constraints not enforced
>  Trees are unrooted
>
>Heuristic search completed
>   Total number of rearrangements tried = 197794
>   Score of best tree(s) found = 473
>   Number of trees retained = 6
>   Time used = 3.00 sec
]
	Translate
		1 Lespedeza_tomentosa,
		2 Lespedeza_jiangxiensis_2,
		3 Lespedeza_formosa_1,
		4 Lespedeza_lichiyuniae_1,
		5 Lespedeza_lichiyuniae_2,
		6 Lespedeza_cuneata,
		7 Lespedeza_floribunda,
		8 Lespedeza_virgata_1,
		9 Lespedeza_inschanica_2,
		10 Lespedeza_juncea,
		11 Lespedeza_forrestii,
		12 Lespedeza_fordii,
		13 Lespedeza_jiangxiensis_1,
		14 Lespedeza_pilosa_1,
		15 Lespedeza_chinensis,
		16 Lespedeza_patens,
		17 Lespedeza_maximowiczii,
		18 Lespedeza_davidii,
		19 Lespedeza_bicolor,
		20 Lespedeza_dunnii,
		21 Lespedeza_pilosa_2,
		22 Lespedeza_fasciculiflora,
		23 Lespedeza_formosa_2,
		24 Lespedeza_hispida,
		25 Lespedeza_potaninii,
		26 Lespedeza_cyrtobotrya,
		27 Lespedeza_daurica,
		28 Lespedeza_inschanica_1,
		29 Lespedeza_homoloba,
		30 Lespedeza_caraganae_1,
		31 Lespedeza_caraganae_2,
		32 Lespedeza_buergeri,
		33 Lespedeza_virgata_2,
		34 Lespedeza_capitata,
		35 Lespedeza_angustifolia,
		36 Lespedeza_hirta,
		37 Lespedeza_intermedia,
		38 Lespedeza_violacea,
		39 Lespedeza_virginica,
		40 Lespedeza_repens,
		41 Lespedeza_stuevei,
		42 Kumerowia_stipulacea,
		43 Kumerowia_striata,
		44 Campylotropis_macrocarpa,
		45 Campylotropis_delavayi,
		46 Campylotropis_hirtella,
		47 Desmodium_heterocarpon,
		48 Desmodium_microphyllum
		;
tree PAUP_2 = [&R] (((((((1:0,4:0,5:0,6:0,9:0,10:0,11:1,22:0,28:0):1,((2:0,13:0):2,14:0,21:0):3,(((3:0,23:0):1,(17:0,(18:0,26:0,32:0):3):2,19:3):2,(16:0,29:1):1):1,24:0,(25:2,27:0):6,(30:0,31:0):3):17,(((7:0,15:3):2,20:2):1,(8:0,12:0,33:1):0):15):10,((34:10,((35:1,36:1):1,39:1):4):4,(37:3,(38:1,40:0,41:0):1):12):17):23,(42:18,43:24):32):96,(44:10,(45:10,46:5):7):124):2,47:61,48:65);
End;