#NEXUS [written Fri Oct 21 18:30:48 CEST 2011 by Mesquite version 2.75 (build 564) at fli-tue-pc324/172.20.47.5] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=9; TAXLABELS Mus_musculus Rattus_norvegicus Homo_sapiens Canis_familaris Bos_taurus Gallus_gallus _Xenopus_tropicalis Danio_rerio Salmo_salar ; END; BEGIN CHARACTERS; TITLE CEA_receptor_in_human_and_dog; DIMENSIONS NCHAR=816; FORMAT DATATYPE = Protein INTERLEAVE GAP = - MISSING = ?; MATRIX Mus_musculus --------------------------------------------------------EKRKEKNIKRGGN-RFEPYSNPTK Rattus_norvegicus --------------------------------------------------------EKRKEKNIKRGGN-RFEPYANPTK Homo_sapiens --------------------------------------------------------EKRKEKNIKRGGN-RFEPYANPTK Canis_familaris --------------------------------------------------------EKRKEKNIKRGGN-RFEPYANPTK Bos_taurus --------------------------------------------------------EKRKEKNIKRGGN-RFEPYANPTK Gallus_gallus --------------------------------------------------------EKRKEKSVKRGGN-RFEPYANPAK _Xenopus_tropicalis --------------------------------------------------------DKRKEKGMKKSSN-RFEPYN-PQR Danio_rerio ALPRGLSGVGLGLGPGGQPIDATQLNRGGMGNMGPGGMDGMGYGGMGRMGGMDNFGESRKERPPKRGGGGRFEPYSNPNK Salmo_salar --------------------------------------------------------NTRKERPQKRGGG-RFEPYGNPSK Mus_musculus RYRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPD Rattus_norvegicus RYRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPD Homo_sapiens RYRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPD Canis_familaris RYRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPD Bos_taurus RYRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPD Gallus_gallus RYRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLGGRPLKVKEDPD _Xenopus_tropicalis RFRAFISNIPFDVKWQALKDLVKEKVGEVTYVELLMDDEGKSRGCAAVEFKLEESMKKAVQVLNKHVFNGRPLKVREDPD Danio_rerio RYSVFVSNIPYDVKWQTLKDLMKEKVGEVTYVEHLMDGEGKSRGCAVVEFRTEELMKKAVEKVNKHVMNGRPLKVKEDPD Salmo_salar RYRVFVSNIPYDVKWQALKDLMKEKVGEVTYVEHLMDGEGKSRGCAIVEFRTEELMKKAVEKVNKHNLNGRPLKVKEDPD Mus_musculus GEHARRAMQKVMATTG-GMG----------------------------MGPGGPGMI------------------NIPPS Rattus_norvegicus GEHARRAMQKVMATTG-GMG----------------------------MGPGGPGMI------------------NIPPS Homo_sapiens GEHARRAMQKVMATTG-GMG----------------------------MGPGGPGMI------------------TIPPS Canis_familaris GEHARRAMQKVMATTG-GMG----------------------------MGPGGPGMI------------------NIPPS Bos_taurus GEHARRAMQKVMATTG-GMG----------------------------MGPGGPGMI------------------NIPPS Gallus_gallus GEHARRAMQKVMAAGGMGIG----------------------------PGPGGPGMI------------------NIPPS _Xenopus_tropicalis GDRSRRAAHSVFGLGPMGMGGPGPMGLGGPGP----------MGMPGPMGMGGPGPIGLGGPGPLGMGGPGPVGGNIPPS Danio_rerio GVISQREANRGHGGGGGGGGPPGMGGGMGGGMGGGMGGMG------MGPGPGSSSMV------------------NIPPS Salmo_salar GVIAQRDLHRAQGGGGGG--PPGGHGGMNMGMGMDRMNMERMNMDCMGPGPGGPPMV------------------NIPPS Mus_musculus ILNNPNIPNEIIHALQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGIVTFEQSIEAVQAIS Rattus_norvegicus ILNNPNIPNEIIHALQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAIS Homo_sapiens ILNNPNIPNEIIHALQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAIS Canis_familaris ILNNPNIPNEIIHALQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAIS Bos_taurus ILNNPNIPNEIIHALQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAIS Gallus_gallus ILNNPNIPNEIIHALQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGAVVRADILEDKDGKSRGIGTVTFEQAIEAVQAIS _Xenopus_tropicalis LLNNPNIPREVIHALQAGRLGSTVFVANLDYSVGWKKLKEVFGIAGTVLRADVLEDKDGKSRGIGTVTYEQPIEAVQAIS Danio_rerio LMNNPNIPNEVIHGLQAGKIGSTIFVANLDYKVGWKKLKEVFGMAGMVVRADILEDKDGKSRGMGTVTFDMPIEAVQAVS Salmo_salar LMNNSNIPNEIIHGLQAGKIGSTVFVANLDYKVGWKKLKEVFGMAGVVVRTDILEDKDGNSRGMGTVTFDMPIEAVQAVS Mus_musculus MFNGQLLFDRPMHVKMDERALPKGDFFPPERPQQLPHGLGGIGMGLGPGGQPIDANHLSKGIGMGNLGPAGMGMEGIGFG Rattus_norvegicus MFNGQLLFDRPMHVKMDERALPKGDFFPPERPQQLPHGLGGIGMGLGPGGQPIDANHLNKGIGMGNLGPAGMGMEGIGFG Homo_sapiens MFNGQLLFDRPMHVKMDERALPKGDFFPPERPQQLPHGLGGIGMGLGPGGQPIDANHLNKGIGMGNIGPAGMGMEGIGFG Canis_familaris MFNGQLLFDRPMHVKMDERALPKGDFFPPERPQQLPHGLGGIGMGLGPGGQPIDANHLNKGIGMGNIGPAGMGMEGIGFG Bos_taurus MFNGQLLFDRPMHVKMDERALPKGDFFPPERPQQLPHGLGGIGMGLGPGGQPIDANHLNKGIGMGNLGPAGMGMEGIGFG Gallus_gallus MFNGQLLFDRPMHVKMDERAFPKGDFFPPERPQQLPR----------------------------------MGMEGMGFG _Xenopus_tropicalis MFNGQPLFDRPMMVKMDDKSMPKGDLFPADRPPQLPRGLGGIGMGLGPGGQPIDANHLR---GSSMGGPGGISMDSMGFG Danio_rerio MFNGQLLFNRVMHVKLDEKSLPKGDFAPPER---------------APGG----------GGGG---------------- Salmo_salar MFNGQLLFNRVMHVKLDEKSLPKGDFAPPERPPALPRGLSGIGQGLGPGGQPIDATALNRGGGGGMGNMGPGGMDGMGFG Mus_musculus --INKIGGMEGPFGGGMENMG---RFGSGMNMGRINEI-------LSNALKRGEI--------IAKQGGGGAGGSVPGIE Rattus_norvegicus --INKIGGMEGPFGGGMENMG---RFGSGMNMGRINEI-------LSNALKRGEI--------IAKQGGGGAGGSVPGIE Homo_sapiens --INKMGGMEGPFGGGMENMG---RFGSGMNMGRINEI-------LSNALKRGEI--------IAKQGGGGGGGSVPGIE Canis_familaris --INKMGGMEGPFGGGMENMG---RFGSGMNMGRINEI-------LSNALKRGEI--------IAKQGGGGGGGSVPGIE Bos_taurus --INKMGGMEGPFGGGMENMG---RFGSGMNMGRINEI-------LSNALKRGEI--------IAKQGGGGGGGSVPGIE Gallus_gallus --MNKMGGMEGPFGG-MENIG---RFPAGMNMGRMSEMDRAMGGGFEREFGRNEMGMSRSFGETLERGIGGGNASIPGIE _Xenopus_tropicalis --MNKMG-IDGPPVGGNSSLGSINRFPSGLGLGRMSGDLDR---AMSVGFDRSELN-------TLSRGYG------DSLD Danio_rerio --------------GGMNNMD---RFGP-SGMGRMNDMDRG----MGGGFDRDFS----------------------GRN Salmo_salar GGMGRMGGMDN-FGGGMNNME---RFGP-SGMGRMNDMDHG----IGGAFDREC-----------------------GRN Mus_musculus R-MGPGIDRISGAGMERMGAGLGHGMDRVGSEIERMGLVMDRMGS-VERMGSSIER--MGPLGLDHMASSIERMGQTMER Rattus_norvegicus R-MGPGIDRISGAGMERMGAGLGHGMDRVGSEIERMGLVMDRMGS-VERMGSGIER--MGPLGLDHMASSIERMGQTMER Homo_sapiens R-MGPGIDRLGGAGMERMGAGLGHGMDRVGSEIERMGLVMDRMGS-VERMGSGIER--MGPLGLDHMASSIERMGQTMER Canis_familaris R-MGPGIDRIGGAGMERMGAGLGHGMDRVGSEIERMGLVMDRMGS-VERMGSGIER--MGPLGLDHMASSIERMGQTMER Bos_taurus R-MGPGIDRIGGAGMERMGAGLGHGMDRVGSEIERMGLVMDRMGS-VERMGSGIER--MGPLGLDHMASSIERMGQTMER Gallus_gallus R-MAPGIDRMG-SGIERIPSGMGHGMERVGSEIDRMGLVLDRMSSNVDRIGSGIDR--MAPLGIDHIAPNIERMGPAIER _Xenopus_tropicalis RGIGSGAGNLV-AGIDRLSSGLGRGVDRVPSDIDRMGLVMDRLGPSADRMGSGIGSG-MGSLGMDHISSSIDRI------ Danio_rerio D-MGMSRSNFG----DSFDRGMGNSMG-----MDRMNSGMDRLSGGIDRMGGGGGGGGMDRMGGGGGGGGMDRMSD---- Salmo_salar E-MGMSRNNFG----ESFDRGMGSSLG-----MDRMSSGMDRLGGGMDRLGG------MERM---------DRVSD---- Mus_musculus IGSGVERMGAGMGFGLERMAAPIDRVGQTIERMGSGVERMGPAIERMG-LSMDRMVPTGMGASLERMGPVMDRMATGLER Rattus_norvegicus IGSGVERMGAGMGFGLERMAAPIDRVGQTIERMGSGVERMGPAIERMG-LSMDRMVPTGMGAGLERMGPVMDRMATGLER Homo_sapiens IGSGVERMGAGMGFGLERMAAPIDRVGQTIERMGSGVERMGPAIERMG-LSMERMVPAGMGAGLERMGPVMDRMATGLER Canis_familaris IGSGVERMGAGMGFGLERMAAPIDRVGQTIERMGSGVERMGPAIERMG-LSMERMVPAGMGAGLERMGPVMDRMATGLER Bos_taurus IGSGVERMGAGMGFGLERMAAPIDRVGQTIERMGSGVERMGPAIERMG-LGMERMVPAGMGAGLERMGPVMDRMATGLER Gallus_gallus MGSGIERMGSGIGFGIERMGAAIDRVGTTMDRMGSGVERMGSGMDRMG-IGMERMVPAGMGTG---MGQVIERMPAGLDR _Xenopus_tropicalis VASSLDRMSTNIGYGVDRMGSSIDRVGSTIDRMGSSIDRIGSGMDRVG-VGMDRLGSS-----------SMDRMASGLDR Danio_rerio ----LDRMG----SSFDRMGSGLDRLGPSMDRMGSGLDRMSTSVDRMGPGGFDRLGSS-----------SMDRMSGGMDF Salmo_salar ----LDRLGG---SGFDRMGSGLDRLGPSMDRLGSGLDRMSSSMDRLGPAGFDCLGPS-----------SLDRMSTGLDF Mus_musculus MGANNLERMGLERMGANSLERMG--LERMGANSLERMGPAMGPALGAGIERMGLAMGGAGGASFDRAIEMERGNFGGSFA Rattus_norvegicus MGANNLERMGLERMGANSLERMG--LERMGANSLERMGPAMGPALGAGIERMGLAMGGAGGASFDRAIEMERGNFGGSFA Homo_sapiens MGANNLERMGLERMGANSLERMG--LERMGANSLERMGPAMGPALGAGIERMGLAMGGGGGASFDRAIEMERGNFGGSFA Canis_familaris MGANNLERMGLERMGANSLERMG--LERMGANSLERMGPAMGPALGAGIERMGLAMGGGGGASFDRAIEMERGNFGGSFA Bos_taurus MGANNLERMGLERMGANSLERMG--LERMGANSLERMGPAMGPALGAGIERMGLAMGGGGGASFDRAIEMERGNFGGSFA Gallus_gallus IGATPMERIGIDRMGAASMERMG--LERIGATNMERMGPAMGQGMGAGIDRMGLAMG----SNFERTMEMERGNFAGNFA _Xenopus_tropicalis MGPMMDRLPSVDRLTAGSMNRVG--LDHIASSPLDRMGPGIG--MGS---SMGLGMG----SSFDRPMDIDHTKFGNNFG Danio_rerio ASPMGM-----DRMNTG-LDRMGSNFDRMGSGGMDRFSS-GLDRMGSSMDRMGSGGIG---GQFDRPGDMDRGNFGSPFG Salmo_salar ASPMGMA----DRMNTG-MERMGTNFDRMGSAGMDRFPTTGLDRMGSAMDHMGAAGVG---GQYDRPAEMERGGFG---- Mus_musculus GSFGGAGGHAP-GVARKACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG Rattus_norvegicus GSFGGAGGHAP-GVARKACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG Homo_sapiens GSFGGAGGHAP-GVARKACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG Canis_familaris GSFGGAGGHAP-GVARKACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG Bos_taurus GSFGGAGGHAP-GVARKACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG Gallus_gallus GSLGGTGGPAA-GVARKACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVRFESPEVAERACRMMNG _Xenopus_tropicalis GSFGGTAGIRPVAVPRKGCQIFVRNLSFDCTWKMLKDQFGECGHVVYADIKTENGKSKGCGVVRFESPEVAERACRMMNG Danio_rerio GSGQGGGPGSGGANARKGCQIFVRNLPFDFTWKMLKDTFNSCGMVQYADIKMENGKSKGCGVVRFDNPETAERACRTMNG Salmo_salar ----GNGFGGAGANARKGCQIFVRNLPYDFTWKVLKDTFNTCGMVQYADIKTENGKSKGCGVVRFDNPETAERACRTMNG Mus_musculus MKLSGREIDVRIDRNA Rattus_norvegicus MKLSGREIDVRIDRNA Homo_sapiens MKLSGREIDVRIDRNA Canis_familaris MKLSGREIDVRIDRNA Bos_taurus MKLSGREIDVRIDRNA Gallus_gallus IQLRGREIDVRIDRNA _Xenopus_tropicalis AKLGGREIDVRMDRNA Danio_rerio YRLNGREIDVRIDRNA Salmo_salar YRLNGREIDVRIDRNA ; END; BEGIN TREES; Title Analysis_of_the_CEA_receptor; LINK Taxa = Taxa; TRANSLATE 1 Mus_musculus, 2 Rattus_norvegicus, 3 Homo_sapiens, 4 Canis_familaris, 5 Bos_taurus, 6 Gallus_gallus, 7 _Xenopus_tropicalis, 8 Danio_rerio, 9 Salmo_salar; TREE Imported_tree_0 = ((8:0.06974661,9:0.08542946)1.0000:0.15093245,(7:0.23712104,(6:0.07654349,(5:0.0,(4:7.75E-6,(3:0.00379971,(1:0.00378729,2:0.0)0.9580:0.00568884)0.1280:9.147E-5)0.6180:0.00189748)1.0000:0.09161384)1.0000:0.12113544):0.15093245); END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 816; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 816; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Mk1 (est.)': 1 - 816; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1319214648949; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 1856009356721432257; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 8751289700450329805; mqVersion 275; checksumv 0 3 1100447571 null getNumChars 816 numChars 816 getNumTaxa 9 numTaxa 9 short false bits 1048575 states 1048575 sumSquaresStatesOnly 2.32457052759E13 sumSquares 2.32457052759E13 longCompressibleToShort false usingShortMatrix false NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 700 464; setLocation 768 43; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #1856009356721432257 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #1856009356721432257; getWindow; tell It; newAssistant #mesquite.lists.DefaultTaxaOrder.DefaultTaxaOrder; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 600 397; setLocation 768 43; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.ibeam; endTell; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #1856009356721432257 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 832.1319190287741.3624010951446248925; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 600 397; setLocation 768 43; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.reroot; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 6; orientRight; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #8751289700450329805 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 600 397; setLocation 768 43; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;