NEXUS [File created by TreeBASE: 7/26/07 21:05:19] [Matrix accession#: M1919] BEGIN TAXA; TITLE M1919; DIMENSIONS NTAX=28; TAXLABELS Sydowia_polyspora Scleroconidioma_sphagnicola Sarcinomyces_crustaceus Rhizosphaera_pini Rhizosphaera_oudemansii Rhizosphaera_macrospora Rhizosphaera_kalkhoffii Phaeosclera_dematioides Phaeocryptopus_gaeumanii Kabatina_thujae Kabatina_juniperi_AF260224 Kabatina_juniperi_AF182376 Kabatiella_lini Hormonema_sp_ATCC74360 Hormonema_prunorum Hormonema_macrosporum Hormonema_dematioides_AJ278927 Hormonema_dematioides_AF013228 Endoconidioma_populi_UAMH_10298 Endoconidioma_populi_UAMH_10297 Dothiora_rhamni_alpinae Dothiora_europaea Dothiora_cannabinae Dothidea_insculpta Dothidea_hippophaes Aureobasidium_pullulans_AJ276062 Aureobasidium_pullulans_AF121287 Aureobasidium_pullulans_AF013229 ; END; BEGIN CHARACTERS; TITLE M1919; DIMENSIONS NCHAR=567; FORMAT DATATYPE = DNA MISSING = ? GAP = - ; MATRIX Sydowia_polyspora CATT-AAAGAG-ATAGGGT-CTTC---------A-T---GGCCCG-ACCTCCAACCCTCTGTTGTTAAAACTA----CCTTGTTGCTTTGGCGGGACCGTCTCGG-TCT--CCGAGCGCACTAACC-CTCGGGT-TGGTGAGCGCCCGCCAGAGTCCAACCAAACTCTTG-TATT-AAACCAGTCGTCTGAGTATAAAATTTTAATTAAATTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCG-AATCTTTG-AACGCACATTGCGCCCCTTGGTATTCCGAGGG-GCATGCCTG-TTCGAGCGTCATTACACCACTCAAGCATCGCTTGGTATTGGGAA-CGGTCCGTCG-CAAGGCGGGCCTTCC-TCGAAG-ACCTCGGCGGGGTTCAAC-CAACTTCGGGCGTAGTA-GAGTTAAATCGAA--CGTCTTATAA-GCTTGGT-CGGATCTCATTG-CCG-----------TCAAACCTTTAAATTTT-CTAGGTTGACC Scleroconidioma_sphagnicola CATT-AAAGAG-TAAGGGT-CTCT---------------GGCCCGAACCTCCAACCCTCTGTTGTTAAAACTA----CCTTGTTGCTTTGGCGGGACCGTTC-GG-TCT---CGAGCGCGCCGGTC-TTCGGAT-TGGCGAGCGCCCGCCAGAGTCCAACCAAACTCTTG-TATT-AAACCAGTCGTCTGAGTATAAAATTTTAATTTAATTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCG-AATCTTTG-AACGCACATTGCGCCCCTTGGTATTCCGAGGG-GCATGCCTG-TTCGAGCGTCATTACACCACTCAAGCACTGCTTGGTATTGGGCA-TCGTCCGTCG-AAAGACGGGCGTGCC-TCGAAG-ACCTCGGCGGGGCCTAAC-CGGCTTCGGGCGTAGTA-GAGTTAAATCGAA--CGTCTTATGA-GTCTGGT-TAGAACCCATTG-CCG-----------TAAAACC-TTTTATTTT-CTAGGTTGACC Sarcinomyces_crustaceus CATTAAAAGAG-ATAGGGT-CTC----------A--C--GGCCCG-ACCTTCAACCCTTTGTTGTTTAAA--AAAA-CC-TGTTGCTTTGGCGGGACCGTTC-G--TCCTCGTGACGGACTGTCGGTCTTCGGCCCGGCAAGCGCCCGTCAGAGTCCAACCAAACTCTTGATAT---AACCAGTCGTCTGAGAATAAAGATT-TAATCAATTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCG-AATCTTTG-AACGCACATTGCGCCCCCTGGTATTCCGGGGG-GCATGCCTG-TTCGAGCGTCATTACACCACTCAAGCTATGCTTGGTATTAGGCCCTCGCCCCT-GTCAAAGGGGGCGTGCC-TCAAAC-ACCTCGGCGAAGTCTCAT-CGGCTTTGGGCGCAGTA-GAATTTACTCAAAA-CGCTCGTGGA-GTCTGGT-GGAA--CTTTTG-CCGCAAAACCGCGTCGAAAGACACA--TTTTTAAAGGTTGACC Rhizosphaera_pini CATT-AAAGAG-TAAGGGT-CTCC---------------GGCCCG-ACCTCCAACCCTTTGTTGTTAAAACTA----CCTTGTTGCTTTGGCGGGACCGTTC-GG-TCT---CGAG-GCACCGGTTCTTCGGAT-TGGTGAGCGCCCGCCAGAGTCCAACCAAACTCTTG-TATT-AAACCAGTCGTCTGAGTATAAAATTTTAATTTAATTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCG-AATCTTTG-AACGCACATTGCGCCCCTTGGTATTCCGAGGG-GCATGCCTG-TTCGAGCGTCATTACACCACTCAAGCACTGCTTGGTATTGGGCACCCGTCCGCCG-AAAGGCGGGCGTGCC-TCGAAG-ACCTCGGCGGGGCCTGAC-CGGCTTCGGACGTAGTA-GAGTTAAATCAAAA-CGTCTCATGA-GTCCGGT-TGGAACCCATTG-CCG-----------TAAAACCTTTTTATTT--CTAGGTTGACC Rhizosphaera_oudemansii CATT-AAAGAG-TAAGGGT-CTCT---------------GGCCCGAACCTCCAACCCTTTGTTGTTAAAACTA----CCTTGTTGCTTTGGCGGGACCGTTC-GG-TCT---CGAGCGCACCGGTC-TTCGGAT-TGGTGAGCGCCCGCCAGAGTCCAACCAAACTCTTG-TATT-AAACCAGTCGTCTGAGTATAAAATTTTAATTTAATTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCG-AATCTTTG-AACGCACATTGCGCCCCTTGGTATTCCGAGGG-GCATGCCTG-TTCGAGCGTCATTACACCACTCAAGCACTGCTTGGTATTGGGCACCCGTCCGCCG-AAAGGCGGGCGTGCC-TCGAAG-ACCTCGGCGGGGCCTAACACGGCTTCGGGCGTAGTAAAAGTTAAATCAAAA-CGTCTTATAA-GTCTGGT-TGGAACCCATTG-CCG-----------TAAAACCTTTTTTTTTT---AGGTTG-CC Rhizosphaera_macrospora CATT-AAAGAG-TAAGGGT-CTCC---------------GGCCCGAACCTCCAACCCTTTGTTGTTAAAACTA----CCTTGTTGCTTTGGCGGGACCGTTC-GG-TCT---CGAGCGCACCGGTC-TTCGGAT-TGGTGAGCGCCCGCCAGAGTCCAACCAAACTCTTG-TATT-AAACCAGTCGTCTGAGTATAAAATTTTAATTTAATTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCG-AATCTTTG-AACGCACATTGCGCCCCTTGGTATTCCGAGGG-GCATGCCTG-TTCGAGCGTCATTACACCACTCAAGCACTGCTTGGTATTGGGCACCCGTCCGCCG-AAAGGCGGGCGTGCC-TCGAAG-ACCTCGGCGGGGCCTAAC-CGGCTTCGGGCGTAGTA-GAGTTAAATCAAAA-CGTCTTATAAAGTCTGGT-TAGAACCCATTG-CCG-----------TAAAACCTTTTATTTTTTCTAGGTTGACC Rhizosphaera_kalkhoffii CATT-AAAGAG-TAAGGGTCCTCC---------------GGCCCG-ACCTCCAACCCTTTGTTGTTAAAACTA----CCTTGTTGCTTTGGCGGGACCGTTC-GG-TCT---CGAG-GCACCGGTC-TTCGGAT-CGGTGAGCGCCCGCCAGAGTCCAACCAAACTCTTG-TATT-AAACCAGTCGTCTGAGTATAAAATTTTAATTTAATTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCG-AATCTTTG-AACGCACATTGCGCCCCTTGGTATTCCGAGGG-GCATGCCTG-TTCGAGCGTCATTACACCACTCAAGCACTGCTTGGTATTGGGCACCCGTCCGCCG-AAAGGCGGGCGTGCC-TCGAAG-ACCTCGGCGGGGCCTAAC-CGGCTTCGGGCGTAGTA-GAGTTAAATCAAAAACGTCTTATAA-GTCTGGT-TAGAACCCATTG-CCG-----------TAAAACCTTTTTATTTT-CTAGGTTGACC Phaeosclera_dematioides CATT-AATGAG-TGAGGGT-CCTC---------A--C-CGGCCCG-ACCTCCAACCCTTTGTCGTTTAAACAAAAACCCTTGTTGCTTTGGCGGTGCCGTCC-G--CCG--GCCGGCCCTCTGTGG-CCCTA---GGCCGGGCGCCCGCCGGGGTGAAACCAAACTCTTGCGATGC-AACCATACGTCCGAGT-AACCGAT--AAATCAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCG-AATCTTTG-AACGCACATTGCGCCCCTTGGTATTCCGGGGG-GCATGCCTG-TTCGAGCGTCATTACACCAATCAAGCTCTGCTTGGAGTTAGGTCTTCGTCCCCCGTCAGGGCGGGCGTGCC-TCAAAA-CATTCGGCGAAGTCACAC-CGGCTTTGGGCGTAGTA-GAATCT--TCAAAA-CGTCTAATGT-GGCCGG--GCGGGTCTTCTG-CCG-----------TCAAACCGCAAACATTTACCAGGTTGACC Phaeocryptopus_gaeumanii CATT-AAAGAG-TAAGGGT---T--ATTC-----GT---AGCCCG-ACCTCCAAMCCTTTGTTGTTATAACTA----CCTCGTTGCTTTGGCGGGACCGCTC-GG-TCT---CGAGC-TGCTGGTC-TTCGGCC-CGGCAAGTGCCCGCCAGAGTCTACTCAAACTCTTGTT-TT--AACCGGTCGTCTGAGT-TAAACTTTTAATTAAATTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAAATCTTTGAAACGCACATTGCGCTCCCTGGTATTCCGGGGGAGCATGCCTG-TTCGAGCGTCATTACACCACTCAAGCACTGCTTGGTATTAGGCCATCGTCCCCCG-AAAGGTGGGCGTGCC-TCAAAC-ACCTCGGCGGAACCTCAC-CGGCTTTGGGCGTAATA-AAATTTC-TCAA---CGTCTTATAAGTACCGGTTCTGACTCCTTTG-CCG-----------TTAAACCCCAAACTTTT-AAAGGTTGACC Kabatina_thujae CATT-AAAGAG-ATAGGGT-CCT----------AGT---GGCCCA-ACCTCCAACCCTCTGTTGTTATAACTA----CCTTGTTGCTTTGGCGGGACCGTTC-GG-TCT--CCGAGCGCACCAGTC-TTCGGAC-AGGTGAGCGCCCGCCGGAGTCCAACCAAACTCTTGTTTTT-AAACCAGTCGTCTGAGTATAAAATTTTAATTAAATTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCG-AATCTTTG-AACGCACATTGCGCCCCTTGGTATTCCGAGGG-GCATGCCTG-TTCGAGCGTCATTACACCACTCAAGCACTGCTTGGTATTGGGCACTCGTCCGCCG-CAAGGCGGGCGTGCC-TCGAAG-ACCTCGGCGGGGTTTCAT-CAACTTCGGGCGTAGTA-GAGTTAAATCGAA--CGTCTTATAA-GCTTGGT-GAGATCTCATTG-CCG-----------TTAAACCCTTTTATTTTTC-AGGTTGACC Kabatina_juniperi_AF260224 CATT-AAAGAG-TTAGGGT-CCC----------AGT---GGCCCA-ACCTCCAACCCTCTGTTGTTATAACTA----CTTCGTTGCTTTGGCGGGACCGTTC-GG-TCCT-CCGAGCGCACCAGTC-TTCGGAC-AGGTGAGCGCCCGCCGGAGTCCAACCAAACTCTTGTTTTT--AACCAGTCGTCTGAGTATAAAATTTTAATTAAATTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCG-AATCTTTG-AACGCACATTGCGCCCCTTGGTATTCCGAGGG-GCATGCCTG-TTCGAGCGTCATTACACCACTCAAGCACTGCTTGGTATTGGGCACTCGTCCGCCG-TAAGGCGGGCGTGCC-TCGAAG-ACCTCGGCGGGGTTCCAT-CAACTTCGGGCGTAGTA-GAGTTAAATCGAA--CGTCTTATAA-GCTTGGT-GAGATCTCATTG-CCG-----------TTAAACCTTTCTATTTTTC-AGGTTGACC Kabatina_juniperi_AF182376 CATT-AAAGAG-TTAGGGT-CCT----------AGT---GGCCCA-ACCTCCAACCCTCTGTTGTTATAACCA----CTTCGTTGCTTTGGCGGGACCGTTC-GG-TCCT-CCGAGCGCACCAGTC-TTCGGAC-AGGTGAGCGCCCGCCGGAGTCCAACCAAACTCTTGTTTTT--AACCAGTCGTCTGAGTATAAAATTTTAATTAAATTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCG-AATCTTTG-AACGCACATTGCGCCCCTTGGTATTCCGAGGG-GCATGCCTG-TTCGAGCGTCATTACACCACTCAAGCACTGCTTGGTATTGGGCACTCGTCCGCCG-TAAGGCGGGCGTGCC-TCGAAG-ACCTCGGCGGGGTTTCAT-CAACTTCGGGCGTAGTA-GAGTTAAATCGAA--CGTCTTATAA-GCTTGGT-GAGATCTCATTG-CCG-----------TTAAACCTTTTTATTTTTC-AGGTTGAC? Kabatiella_lini CATT-AAAGAG-TAAGGGTGCTC----------AGC----GCCCG-ACCTCCAACCCTTTGTTGTTAAAACTA----CCTTGTTGCTTTGGCGGGACCGCTC-GG-TCT---CGAGCCGCTGGGGA-TTCGTCCCAGGCGAGCGCCCGCCAGAGTTAAACCAAACTCTTGTTATTT-AACCGGTCGTCTGAGT-TAAAATTTTGAATATATCAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCG-AATCTTTG-AACGCACATTGCGCCCCTTGGTATTCCGAGGG-GCATGCCTG-TTCGAGCGTCATTACACCACTCAAGCTATGCTTGGTATTGGGCG-TCGTCC-TT---AA-TCGGGCGCGCC-TTAAAG-ACCTCGGCGAGGCCACTC-CGGCTTTAGGCGTAGTA-GAATTTATTCGAA--CGTCTGTCAA-A---GGA-GAGGAACT-CTG-CCGAC---------TGAAACCTTTATATTTTTCTAGGTTGACC Hormonema_sp_ATCC74360 CATT-AAAGAG-TTAGGGT-CCT----------AGT---GGCCCA-ACCTCCAACCCTCTGTTGTTAAAACTA----CCTTGTTGCTTTGGCGGGACCGTTC-GG-TCT--CCGAGCGCGTTAACC-TTCGGGT-TGGCGAGCGCCCGCCAGAGTCCAACCAAACTCTTG-TATT-AAACCAGTCGTCTGAGTATAAAATTTTAATTAAATTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCG-AATCTTTG-AACGCACATTGCGCCCCTTGGTATTCCGAGGG-GCATGCCTG-TTCGAGCGTCATTACACCACTCAAGCACTGCTTGGTATTGGGCA-TCGTCCGTCG-AAAGGCGGGCGTGCC-TCGAAGAACCTCGGCGGGGTTTTTC-CAACTTCGGGCGTAGTA-AAGTTAAATCAAAA-CGTCTTATAA-GCTTGGT-GAGATCTCATTG-CCG-----------TTAAACC-TTTTATTTTTC-AGGTTGACC Hormonema_prunorum CATT-AAAGAG-TAAGGGT-CTCT---------------GGCCCGAACCTCCAACCCTCTGTTGTTATAACTA----CTTCGTTGCTTTGGCGGGACCGCAAAGGTTCTC-CCGAGCGCGCCGGTC-TTCGGAC-AGGCGAGCGCCCGCCAGAGTCTAACCAAACTCTTGTT-TT-AAACCAGTCGTCTGAGTATAAAATTTTAATTAAATTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCG-AATCTTTG-AACGCACATTGCGCCCCTTGGTATTCCGAGGG-GCATGCCTG-TTCGAGCGTCATTACACCACTCAAGCACTGCTTGGTATTGGGCA-TCGTCCGCCGTAAAGGCGGGCGTGCC-TCGAAG-ACCTCGGCGGGGTTTCTC-CAACTTCGGGCGTAGTA-GAGTTAAATCAAAA-CGTCTTATAA-GCTTGGT-GAGATCTCATTG-CCG-----------TTAAACCTTTTTATATTTC-AGGTTGACC Hormonema_macrosporum CATT-AAAGAG-ATAGGGT-CTTC---------A-C---GGCCCG-ACCTCCAACCCTCTGTTGTTAAAACTA----CCTTGTTGCTTTGGCGGGACCGTCTCGG-TCT--CCGAGCGCACTAACC-CTCGGGT-TGGTGAGCGCCCGCCAGAGTCCAACCAAACTCTTG-TATT-AAACCAGTCGTCTGAGTATAAAATTTTAATTAAATTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCG-AATCTTTG-AACGCACATTGCGCCCCTTGGTATTCCGAGGG-GCATGCCTG-TTCGAGCGTCATTACACCACTCAAGCATCGCTTGGTATTGGGAA-CGGTCCGTCG-AAAGGCGGGCCTTCC-TCGAAG-ACCTCGGCGGGGTTCAAC-CAACTTCGGGCGTAGTA-GAGTTAAATCGAA--CGTCTTACAA-GCTTGGT-CGGATCTCATTG-CCG-----------TTAAACCTTTAAATTTT-CTAGGTTGACC Hormonema_dematioides_AJ278927 CATT-AAAGAG-ATAGGGT-CTTC---------A-T---GGCCCG-ACCTCCAACCCTCTGTTGTTAAAACTA----CCTTGTTGCTTTGGCGGGACCGTCTCGG-TCT--CCGAGCGCACTAACC-CTCGGGT-TGGTGAGCGCCCGCCAGAGTCCAACCAAACTCTTG-TATT-AAACCAGTCGTCTGAGTATAAAATTTTAATTAAATTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCG-AATCTTTG-AACGCACATTGCGCCCCTTGGTATTCCGAGGG-GCATGCCTG-TTCGAGCGTCATTACACCACTCAAGCATCGCTTGGTATTGGGAA-CGGTCCGTCG-CAAGGCGGGCCTTCC-TCGAAG-ACCTCGGCGGGGTTCAAC-CAACTTCGGGCGTAGTA-GAGTTAAATCGAA--CGTCTTATAA-GCTTGGT-CGGATCTCATTG-CCG-----------TTAAACCTTTAAATTTT-CTAGGTTGACC Hormonema_dematioides_AF013228 CATT-AAAGAG-ATAGGGT-CTTC---------A-T---GGCCCG-ACCTCCAACCCTCTGTTGTTCAAACTA----CCTTGTTGCTTTGGCGGGACCGTTTCGG-TCT--CCGAGCGCACTAACC-CTCGGGT-AGGTGAGCGCCCGCCAGAGTCCAACCAAACTCTTG-TATT-AAACCAGTCGTCTGAGTATAAAATTTTAATTAAATTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCG-AATCTTTG-AACGCACATTGCGCCCCTTGGTATTCCGAGGG-GCATGCCTG-TTCGAGCGTCATTACACCACTCAAGCATCGCTTGGTATTGGGAA-CGGTCCGTCG-AAAGGCGGGCCTTCC-TCGAAG-ACCTCGGCGGGCTTCAAC-CAACTTCGGGCGTAGTA-GAGTTAAATCGAA--CGTCTTATAA-GCTTGGT-CGGATCTCATTG-CCG-----------TTAAACCTTTAAATTTT-CTAGGTTGACC Endoconidioma_populi_UAMH_10298 CATT-AAAGAG-TTAGGGT-CCC----------AGT---GGCCCA-ACCTCCAACCCTCTGTTGTTAAAACTA----CCTTGTTGCTTTGGCGGGACCGTTC-GG-TCT--CCGAGCGCGTTAACC-TTCGGGT-TGGCGAGCGCCCGCCAGAGTCCAACCAAACTCTTG-TATT-AAACCAGTCGTCTGAGTATAAAATTTTAATTAAATTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCG-AATCTTTG-AACGCACATTGCGCCCCTTGGTATTCCGAGGG-GCATGCCTG-TTCGAGCGTCATTACACCACTCAAGCACTGCTTGGTATTGGGCA-TCGTCCGTCG-AAAGGCGGGCGTGCC-TCGAAG-ACCTCGGCGGGGTTTCTC-CAACTTCGGGCGTAGTA-GAGTTAAATCAAAA-CGTCTTATAA-GCTTGGT-GAGATCTCATTG-CCG-----------TTAAACCTTTTTATTTTAC-AGGTTGACC Endoconidioma_populi_UAMH_10297 CATT-AAAGAG-TTAGGGT-CCC----------AGT---GGCCCA-ACCTCCAACCCTCTGTTGTTAAAACTA----CCTTGTTGCTTTGGCGGGACCGTTC-GG-TCT--CCGAGCGCGTTAACC-TTCGGGT-TGGCGAGCGCCCGCCAGAGTCCAACCAAACTCTTG-TATT-AAACCAGTCGTCTGAGTATAAAATTTTAATTAAATTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCG-AATCTTTG-AACGCACATTGCGCCCCTTGGTATTCCGAGGG-GCATGCCTG-TTCGAGCGTCATTACACCACTCAAGCACTGCTTGGTATTGGGCA-TCGTCCGTCG-AAAGGCGGGCGTGCC-TCGAAG-ACCTCGGCGGGGTTTCTC-CAACTTCGGGCGTAGTA-GAGTTAAATCAAAA-CGTCTTATAA-GCTTGGT-GAGATCTCATTG-CCG-----------TTAAACCTTTTTATTTTAC-AGGTTGACC Dothiora_rhamni_alpinae CATT-AAAGAG-TAAGGGT-CTCT---------------GGCCCGAACCTCCAACCCTCTGTTGTTATAACTA----CCTCGTTGCTTTGGCGGGACCGC-AAGGTTCCC-CCGAGCGCGCCGGTC-TCCGGAC-AGGCGAGCGCCCGCCAGAGTCTAACCAAACTCTTGTTTTT-AAACCAGTCGTCTGAGTATAAAATTTTAATTAAATTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCG-AATCTTTG-AACGCACATTGCGCCCCTTGGTATTCCGAGGG-GCATGCCTG-TTCGAGCGTCATTACACCACTCAAGCACCGCTTGGTATTGGGCA-CCGTCCGCCGTAAAGGCGGGCGTGCC-TCGAAG-ACCTCGGCGGGGTTTCTC-CAACTTCGGGCGTAGTA-GAGTTAAATCAAAA-CGTCTTATAA-GCTTGGT-GAGATCTCATTGCCCG-----------TTAAACCTCAATTTTTTTC-AGGTTGACC Dothiora_europaea CATT-AAAGAGTTAAGGGT-CTCC---------------GGCCCGAACCTCCAACCCTCTGTCGTTATAACTA----CTTCGTTGCTTTGGCGGGACCGCGAAGGTTCTC-CCGAGCGCGCCGGTC-TTCGGAC-GGGCGAGCGCCCGCCAGAGTCCAACCAAACTCTTGTT-TT-AAACCAGTCGTCTGAGTATAAAATTTTAATATAATTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCG-AATCTTTG-AACGCACATTGCGCCCCTTGGTATTCCGAGGG-GCATGCCTG-TTCGAGCGTCATTACACCACTCAAGCACTGCTTGGTATTGGGCA-TCGTCCGCCG-AAAGGCGGGCGTGCC-TCGAAG-ACCTCGGCGGGGTTYCTC-CAACTTCGGGCGTAGTA-GAGTTAAATCAAAAA-GTCTTATAA-GCTTGGT-GGGACCTCATTG-CCG-----------TTAAACCCTCCCG???????????????? Dothiora_cannabinae CATT-AAAGAG-TAAGGGT-CTCT---------------GGCCCGAACCTCCAACCCTCTGTCGTTATAACTA----CTTCGTTGCTTTGGCGGGACCGCGAAGGTTCTC-CCGAGCGCGCCAGTC-TTCGGAC-AGGCGAGCGCCCGCCAGAGTCCAACCAAACTCTTGTT-TT-AAACCAGTCGTCTGAGTATAAAATTTTAATTAAATTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCG-AATCTTTG-AACGCACATTGCGCCCCTTGGTATTCCGAGGG-GCATGCCTG-TTCGAGCGTCATTACACCACTCAAGCACCGCTTGGTATTGGGCA-TCGTCCGTCG-AAAGACGGGCGTGCC-TCGAAG-ACCTCGGCGGGGTTTCTC-CAACTTCGGGCGTAGTA-GAGTTAAATCAAAA-CGTCTTATAA-GCTTGGT-GGGACCTCATTG-CCG-----------TTAAACC-TTTTATTTTTC-A???????? Dothidea_insculpta CATTAAAAGAA-TTGGAGTG-----AC-T-AACCGTCCT---CCG-ACTTCCAACCCTCTGTTGTTATAACTA----CCTTGTTGCTTTGGCGGGACCGTTC-GG-TCCT-CCGAGCGCACCAGTC-TTCGGAC-AGGTGAGTGCCCGCCAGAGTCCAACCAAACTCTTGTTTTT--AACCAGTCGTCTGAGTATAAAATTTTAATTAAATTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCG-AATCTTTG-AACGCACATTGCGCCCCTTGGTATTCCGAGGG-GCATGCCTG-TTCGAGCGTCATTACACCACTCAAGCACTGCTTGGTATTGGGCA-TCGTCCGTCG-AAAGGCGGGCGTGCC-TCGAAG-ACCTCGGCGGGGTTTCTC-CAACTTCGGGCGTAGTA-GAGTTAAATCGAA--CGTCTTATAA-GCTTGGT-GGGACTCCATTG-CCG-----------TTAAACCTTTTA-TTTT-CTAGGTTGACC Dothidea_hippophaes CATTAAAAGA--TT-GAGTGTCGCGACCTAAAAAATCGCGA-CC--ACTTCCAACCCTCTGTTGTTATAACTA----CCTTGTTGCTTTGGCGGGACCGTTC-GG-TCCT-CCGAGCGCACCAGTC-CTCGGAC-AGGTGAGCGCCCGCCAGAGTCCAACCAAACTCTTGTTTTT--AACCAGTCGTCTGAGTATAAAATTTTAATTAAATTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCG-AATCTTTG-AACGCACATTGCGCCCCTTGGTATTCCGAGGG-GCATGCCTG-TTCGAGCGTCATTACACCACTCAAGCACTGCTTGGTATTGGGCA-TCGTCCGTCG-AAAGGCGGGCGTGCC-TCGAAG-ACCTCGGCGGGGTTTCTC-CAACTTCGGGCGTAGTA-GAGTTAAATCGAA--CGTCTTATAA-GCTTGGT-GGGACTCCATTG-CCG-----------TTAAACCTTTTATTTTT-ATAGGTTGACC Aureobasidium_pullulans_AJ276062 ???????????-TAAGGGTGCTC----------AGC----GCCCG-ACCTCCAACCCTTTGTTGTTAAAACTA----CCTTGTTGCTTTGGCGGGACCGCTC-GG-TCT---CGAGCCGCTGGGGA-TTCGTCCCAGGCGAGCGCCCGCCAGAGTTAAACCAAACTCTTGTTATTT-AACCGGTCGTCTGAGT-TAAAATTTTGAATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCG-AATCTTTG-AACGCACATTGCGCCCCTTGGTATTCCGAGGG-GCATGCCTG-TTCGAGCGTCATTACACCACTCAAGCTATGCTTGGTATTGGGTG-CCGTCC-TT---AG-TTGGGCGCGCC-TTAAAG-ACCTCGGCGAGGCCTCAC-CGGCTTTAGGCGTAGTA-GAATTTATTCGAA--CGTCTGTCAA-A---GGA-GAGGACTT-CTG-CCGAC---------TGAAACCTTT--ATTTTTCTAGGTTGACC Aureobasidium_pullulans_AF121287 CATT-AAAGAG-TAAGGGTGCTC----------AGC----GCCCG-ACCTCCAACCCTTTGTTGTTAAAACTA----CCTTGTTGCTTTGGCGGGACCGCTC-GG-TTC---CGAGCCGCTGGGGA-TTCGTCCCAGGCGAGCGCCCGCCAGAGTTAAACCAAACTCTTGTTATTTAAACCGGTCGTCTGAGT-TAAAATTTTGAATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCG-AATCTTTG-AACGCACATTGCGCCCCTTGGTATTCCGAGGG-GCATGCCTG-TTCGAGCGTCATTACACCACTCAAGCTATGCTTGGTATTGGGTG-CCGTCC-TT---AG-TTGGGCGCGCC-TTAAAG-ACCTCGGCGAGGCCACTC-CGGCTTTAGGCGTAGTA-GAATTTATTCGAA--CGTCTGTCAA-A---GGA-GAGGAACT-CTG-CCGAT---------TGAAACCTTT-TATTTTTCTAGG?????? Aureobasidium_pullulans_AF013229 CATT-AAAGAG-TAAGGGTGCTC----------AGC----GCCCG-ACCTCCAACCCTTTGTTGTTAAAACTA----CCTTGTTGCTTTGGCGGGACCGCTC-GG-TCT---CGAGCCGCTGGGGA-TTCGTCCCAGGCGAGCGCCCGCCAGAGTTAAACCAAACTCTTGTTATTT-AACCGGTCGTCTGAGT-TAAAATTTTGAATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCG-AATCTTTG-AACGCACATTGCGCCCCTTGGTATTCCGAGGG-GCATGCCTGTTTCGAGCGTCATTACACCACTCAAGCTATGCTTGGTATTGGGCG-TCGTCC-TT---AGTTTGGGCGCGCCCTTAAAG-ACCTCGGCGAGGCCACTC-CGGCTTTAGGCGTAGTA-GAATTTATTCGAA--CGTCTGTCAA-A---GGA-GAGGAACT-CCG-CCGAC---------TGAAACCTTTAT-TTTTTCTAGGTTGACC ; END; BEGIN CODONS; CODONPOSSET * CodonPositions = N: 1 - 567 ; CODESET * UNTITLED = Universal: all ; END; BEGIN ASSUMPTIONS; OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; END;