#NEXUS
[written Wed Nov 09 15:18:37 CET 2011 by Mesquite  version 2.75 (build 564) at eb115.ebc.uu.se/130.238.155.115]

BEGIN TAXA;
	TITLE Taxa;
	DIMENSIONS NTAX=7;
	TAXLABELS
		Neurospora_crassa_8858 Neurospora_discreta_8579 Neurospora_hispaniola_8817 Neurospora_sitophila_1135 Neurospora_tetrasperma_965_bigA Neurospora_tetrasperma_P4492_bigA Neurospora_tetrasperma_RLM131_bigA 
	;

END;


BEGIN CHARACTERS;
	TITLE  'Matrix in file "matA.nex"';
	DIMENSIONS  NCHAR=996;
	FORMAT DATATYPE = DNA GAP = - MISSING = ?;
	MATRIX
	Neurospora_crassa_8858              ATGTCGGGTGTCGATCAAATCGTCAAGACGTTCGCCGACCTCGCTGAGGACGACCGTGAAGCGGCAATGAGAGCTTTCTCAACGATGATGCGTACCGAACCTGTTCGCCGAATCCCCGCGGCAAAGAAGAAGGTCAACGGCTTCATGGGTTTCAGATGTAAGTCAAATCTGAATCAACATTGTCGTTCATCCATGGCTGATTGCTCTTCAATTTAGCGTACTATTCCCCGCTCTTCTCTCAGCTCCCGCAAAAGGAGAGATCGCCCTTCATGACCATTCTCTGGCAGCATGATCCCTTCCACAATGAGTGGGATTTCATGTGCTCGGTATATTCGTCAATCCGGACCTACCTTGAGCAGGAGAAGGTTACTCTGCAACTCTGGATTCACTATGCTGTCGGCCATCTGGGAGTGATCATCCGCGATAACTACATGGCATCGTTTGGCTGGAACCTCGTCCGTTTTCCCAACGGCACTCACGACCTCGAGCGCACGGCTCTTCCTTTGGTTCAGCCCAATCTCCAGCCCATGAACGGCTTATGCCTGCTCACCAAGTGCCTCGAGAGCGGATTGCCTCTTGCCAATCCTCACTCTGTCATCGCCAAGCTTTCAGATCCTAGCTTCGACATGATCTGGTTCAACAAGCGTCCTCACCGTCAGCAGGGACACGCCGGTCAAACTGATGAATCTGAAGTTGGAGTTTCGGCGATGTTCCCTCGCAATCACACGGTCGCTGCAGAGGTAGATGGCATCATCAATCTTCCTCTCTCCCATTGGATTCAGCAGGGAGAATTCGGTACCGAGTCTGGATACTCAGCTCAGTTTGAGACCTTGTTGGATTCAATCCTCGAGAATGGACACGCCTCCAGCAATGACCCTTACAACATGGCTCTGGCTATCGATGTTCCCATGATGGGTTAGTGGAAGATGAGGTACCATGTCGCATAACTTTACCCGTGTGCTAACCGATTGACAGGATTTAACGGAGGAGCATAGA
	Neurospora_discreta_8579            ATGTCGGGCGTCGACCAAATTGTCAAGACATTTGCTGACCTCGCTGAGGACGACCGCGAAGCGGCAATGAGAGCTTTCTCAACGATGATGCGTACCGAACCTGTTCGCCAAATCCCCGCGACAAAGAAGAAGGTCAACGGCTTCATGGGTTTCAGATGTAAGTTAAATCTGAATC----TTGTCGATAATCCAT-GCTGACTGCTCTTCATTTCAGCGTACTATTCCCCGCTCTTCTCTCAGCTCCCGCAAAAGGAGAGATCGCCCTTTATGACCATTCTCTGGCAGCACGATCCCTTCCACAACGAATGGGATTTCATGTGCTCGGTGTATTCGTCAATCCGTACCTATCTTGAGCAGGAGAAGGTTACTCTGCAACTTTGGATTCACTATGCTGTTGGCCATCTGGGAGTGATTATCCGCGACAACTACATGGCATCGTTTGGCTGGAACCTCGTCCGTCTGCCCAACGGCACACACGACCTCGAGCGCACCGCTCTTCCCTTGATTAGGCACAATCTCCAGCCCATGAACGGCCTATGCCTGCTCACAAAGTGCCTCGAGAGCGGATTGCCTCTTGCCAATCCTCACTCTGTCATCGCCAAGCTTTCAGATCCTAGCTACGACATGATCTGGTTCAACAAGCGTCCTTACAGTCAGCAGAAACATTTTGGTCAAACTGACGATTCTGAACTCGAAGTGTCGGCGATGTTCCCTCGCAATTACGCAGTCGCCGCAGAGGCAGATGGTATCACCAATCTTCCTCTCTCCCATTGGATTCAGCAGGGAGATTTCGGTACTGAGTCCGGATACTCAGCTCATTTTGAGACTTTGTTGGATTCTATTCTCGAGAATGGACACGCCTCCAGCAATGACCCCTACAACATGGCTCTGGCTATGGATGTTCCTATGATGGGTTAGTAGAATATGACGTACCATATCGCATGACTTCACTCGTGTGCTGACCATTTGGCAGGATTCAACGGAGGAGTATAGA
	Neurospora_hispaniola_8817          ATGTCGGGTGTCGATCAAATCGTCAAGACGTTCGCCGACCTCGCTGAGGACGACCGTGAAGCGGCAATGAGAGCTTTCTCAACGATGATGCGTACCGAACCTGTTCGCCGAATCCCCGCGGCAAAGAAGAAGGTCAACGGCTTCATGGGTTTCAGATGTGAGTCAAATCTGAATCAAAATTGTCGTTGATCCATGGCTGATTGCTCTTCATTTCAGCGTACTATTCCCCGCTCTTCTCTCAGCTCCCGCAAAAGGAGAGATCGCCCTTCATGACCATTCTCTGGCAGCATGATCCCTTCCACAATGAGTGGGATTTCATGTGCTCGGTGTATTCGTCAATCCGGACCTACCTTGAGCAGGAGAAGGTTACTCTGCAACTCTGGATTCACTATGCTGTCGGCCATCTGGGAGTGATTATCCGCGACAACTACATGGCATCCTTTGGCTGGAACCTCGTCCGTTTTCCCAACGGCACTCACGACCTCGAGCGCACGGCTCTTCCTTTGGTCCAGCACAATCTCCAGCCCATGAACGGCTTATGCCTGCTCACCAAGTGCCTCGAGAGCGGATTGCCTCTTGCCAATCCTCACTCTGTCATCGCCAAGCTTTCAGATCCTAGCTACGACATGATCTGGTTCAACAAGCGTCCTCACCGTCAGCAGGGACACGCCGTTCAAACTGATGAATCTGATGTTGGAGTTTCGGCGATGTTCCCTCGCAATCACACGGTCGCTGCAGAGGTAGATGGCATCATCAATCTTCCTCTCTCCCATTGGATTCAGCAGGGAGAATTCGGTACCGAGTCTGGATACTCAGCTCAGTTTGAGACCTTGTTGGATTCAATTCTCGAGAATGGACACGCCTCCAGCAATGACCCTTACAACATGGCTCTGGCTATCGATGTTCCCATGATGGGTTAGTGGAAGATGAGGTACCATGTCGCAAAACTTTACCCGTGTGCTAACCGATTAACAGAATTTAACTGAGGAGCATAGA
	Neurospora_sitophila_1135           ATGTCGGGTGTCGATCAGATCGTCAAGACGTTCGCCGACCTCGCTGAGGACGACCGTGAAGCGGCAATGAGAGCTTTCTCAACGATGATGCGTACCGAACCTGTTCGCCGAATCCCCGCGGCAAAGAAGAAGGTCAACGGCTTCATGGGTTTCAGATGTGAGTCAAATCTGAATCAACATTGTCGTTGATCCATGGCTGATTGCTCTTCATTTCAGCGTACTATTCCCCGCTCTTCTCTCAGCTCCCGCAAAAGGAGAGATCGCCCTTCATGACCATTCTCTGGCAGCATGATCCCTTCCACAATGAGTGGGATTTCATGTGCTCGGTGTATTCGTCAATCCGGACCTACCTTGAGCAGGAGAAGGTTACTCTGCAACTCTGGATTCACTATGCTGTCGGCCATCTGGGAGTGATTATCCGCGACAACTACATGGCATCCTTTGGCTGGAACCTCGTCCGTTTTCCCAACGGCACTCACGACCTCGAGCGCACGGCTCTTCCTTTGGTTCAGCACAATCTCCAGCCCATGAACGGCTTATGCCTGCTCACCAAGTGCCTCGAGAGCGGATTGCCTCTTGCCAATCCTCACTCTGTCATCGCCAAGCTTTCAGATCCTAGCTACGACATGATCTGGTTCAACAAGCGTCCTCACCGTCAGCAGGGACACGCCGTTCAAACTGATGGATCTGAAGTTGGAGTTTCGGCGATGTTCCCTCGCAATCACACGGTCGCTGCAGAGGTAGATGACATCATCAATCTTCCTCTCTCCCATTGGATTCAGCAGGGAGAATTCGGTACCGAGTCTGGATACTCAGCTCAGTTTGAGACCTTGTTGGATTCAATTCTCGAGAATGGACACGCCTCCAGCAATGACCCTTACAACATGGCTCTGGCTATCGATGTTCCCATGATGGGTTAGTGGAAGATGAGGTACCATGTCGCAAAACTTTACCCGTGTGCTAACCGATTAACAGAATTTAACGGAGGAGCATAG?
	Neurospora_tetrasperma_965_bigA     ATGTCGGGTGTCGATCAAATCGTCAAGACGTTCGCCGACCTCGCTGAGGACGACCGTGAAGCGGCAATGAGAGCTTTCTCAACGATGATGCGTACCGAACCTGTTCGCCGAATCCCCGCGGCAAAGAAGAAGGTCAACGGCTTCATGGGTTTCAGATGTAAGTCAAATCTGAATCAACATTGTCGTTAATCCATGGCTGATTGCTCTTCATTTCAGCGTACTATTCCCCGCTCTTCTCTCAGCTCCCGCAAATGGAGAGATCGCCCTTCATGACCATTCTCTGGCAGCATGATCCCTTCCACAATGAATGGGATTTCATGTGCTCGGTGTATTCGTCAATTCGGACCTACCTTGAGCAGGAGAAGGTTACTCTGCAACTCTGGATTCACTATGCTGTTCGCCATCTGGGAGTGATTATCCGCGACAACTACATGGCATCGTTTGGCTGGAACCTCGTCCGTTTTCCCAACGGCACTCACGACCTCGAGCGCACGGCTCTTCCTTTGGTTCAGCACAATCTCCAGCCCATGAACGGCTTATGCCTGCTCACCAAGTGCCTCGAGAGCGGATTGCCTCTAGCCAATCCTCACTCTGTCATCGCCAAGCTTTCAGATCCTAGCTATGACATGATCTGGTTCAACAAACGTCCTCACCGTCAGCAGGGACACGTCGGTCAAACTGATGAATCTGAGGTTGGAGTTTCGGCGATGTTCCCTCGCAATCACACGGTCGCTGCAGAGGTAGATGGCATCATCAATCTTCCTCTCTCCCATTGGATTCAACAGGGAGAATTCGGTACCGAGTCTGGATACTCAGCTCAGTTTGAGACCTTGTTGGATTCAATCCTCGAGAATGGACACGCCTCCAGCAATGACCCCTACAACATGGCTCTGGCTATCGATGTTCCCATGATGGGTTAGTGGAAGATGAGGTACCATGTCGCATAACTTTACCCGTGTGCTGACCAATTAACAGGATTTAACGGAGGAGCATAGA
	Neurospora_tetrasperma_P4492_bigA   ATGTCGGGTGTCGATCAAATCGTCAAGACGTTCGCCGACCTCGCTGAGGACGACCGTGAAGCGGCAATGAGAGCTTTCTCAACGATGATGCGTACCGAACCTGTTCGCCGAATCCCCGCGGCAAAGAAGAAGGTCAACGGCTTCATGGGTTTCAGATGTAAGTCAAATCTGAATCAACATTGTCGTTGATCCATGGCTGATTGCTCTTCATTTCAGCGTACTATTCCCCGCTCTTCTCTCAGCTCCCGCAAAAGGAGAGATCGCCCTTCATGACCATTCTCTGGCAGCATGATCCCTTCCACAATGAATGGGATTTCATGTGCTCGGTGTATTCGTCAATCCGGACCTACCTTGAGCAGGAGAAGGTTACTCTGCAACTCTGGATTCACTATGCTGTTCGCCATCTGGGAGTGATTATCCGCGACAACTACATGGCATCGTTTGGCTGGAACCTCGTCCGTTTTCCCAACGGCACTCACGACCTCGAGCGCACGGCTCTTCCTTTGGTTCAGCACAATCTCCAGCCCATGAACGGCTTATGCCTGCTCACCAAGTGCCTCGAGAGCGGATTGCCTCTTGCCAATCCTCACTCTGTCATCGGCAAGCTTTCAGATCCTAGCTATGACATGATCTGGTTCAACAAGCGTCCTCACCGTCAGCAGGGACACGTCGGTCAAACTGATGAATCTGAGGTTGGAGTTTCGGCGATGTTCCCTCGCAATCACACGGTCGCTGCCGAGGTAGATGGCATCATCAATCTTCCTCTCTCCCATTGGATTCAGCAGGGAGAATTCGGTACCGAGTCTGGATACTCAGCTCAGTTTGAGACCTTGTTGGATTCAATCCTCGAGAATGGACACGCCTCCAGCAATGACCCCTACAACATGGCTCTGGCTATCGATGTTCCCATGATGGGTTAGTGGAAGATGAGGTACCATGTCGCATAACTTTACCCGTGTGCTGACCAATTAACAGGATTTAACGGAGGAGCATAGA
	Neurospora_tetrasperma_RLM131_bigA  ATGTCGGGTGTCGATCAAATCGTCAAGACGTTCGCCGACCTCGCTGAGGACGACCGTGAAGCGGCAATGAGAGCTTTCTCAACGATGATGCGTACCGAACCTGTTCGCCGAATCCCCGCGGCAAAGAAGAAGGTCAACGGCTTCATGGGTTTCAGATGTGAGTCAAATCTGAATCAACATTGTCGTTGATCCATGGCTGATTGCTCTTCATTTCAGCGTACTATTCCCCGCTCTTCTCTCAGCTCCCGCAAAAGGAGAGATCGCCCTTCATGACCATTCTCTGGCAGCATGATCCCTTCCACAATGAGTGGGATTTCATGTGCTCGGTGTATTCGTCAATCCGGACCTACCTTGAGCAGGAGAAGGTTACTCTGCAACTCTGGATTCACTATGCTGTCGGCCATCTGGGAGTGATTATCCGCGACAACTACATGGCATCCTTTGGCTGGAACCTCGTCCGTTTTCCCAACGGCACTCACGACCTCGAGCGCACGGCTCTTCCTTTGGTTCAGCACAATCTCCAGCCCATGAACGGCTTATGCCTGCTCACCAAGTGCCTCGAGAGCGGATTGCCTCTTGCCAATCCTCACTCTGTCATCGCCAAGCTTTCAGATCCTAGCTACGACATGATCTGGTTCAACAAGCGTCCTCACCGTCAGCAGGGACACGCCGTTCAAACTGATGAATCTGAAGTTGGAGTTTCGGCGATGTTCCCTCGCAATCACACGGTCGCCGCAGAGGTAGATGGCATCATCAATCTTCCTCTCTCCCATTGGATTCAGCAGGGAGAATTCGGTACCGAGTCTGGATACTCAGCTCAGTTTGAGACCTTGTTGGATTCAATTCTCGAGAATGGACACGCCTCCAGCAATGACCCTTACAACATGGCTCTGGCTATCGATGTTCCCATGATGGGTTAGTGGAAGATGAGGTACCATGTCGCAAAACTTTACCCGTGTGCTAACCGATTAACAGAATTTAACTGAAGAGCATAGA

;



END;

BEGIN ASSUMPTIONS;
	TYPESET * UNTITLED   =  unord:  1 -  996;

END;

BEGIN TREES;
	Title 'Trees from "MatA.tre"';
	LINK Taxa = Taxa;
	TRANSLATE
		1 Neurospora_crassa_8858,
		2 Neurospora_discreta_8579,
		3 Neurospora_hispaniola_8817,
		4 Neurospora_sitophila_1135,
		5 Neurospora_tetrasperma_965_bigA,
		6 Neurospora_tetrasperma_P4492_bigA,
		7 Neurospora_tetrasperma_RLM131_bigA;
	TREE tree_1 = (2:0.04526,((1:0.01017,((3:0.00402,7:0.00298):0.00199,4:0.00401):0.00706):0.00717,(5:0.00691,6:0.00312):0.00404):0.02974);

END;


BEGIN CODONS;
	CODESET * UNTITLED   =  universal:  1 -  996;


END;

BEGIN MESQUITECHARMODELS;
	ProbModelSet * UNTITLED   =  'Jukes-Cantor':  1 -  996;
END;

Begin MESQUITE;
		MESQUITESCRIPTVERSION 2;
		TITLE AUTO;
		tell ProjectCoordinator;
		timeSaved 1320848317680;
		getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa;
		tell It;
			setID 0 5139462195920246602;
			tell It;
				attachments ;
			endTell;
		endTell;
		getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters;
		tell It;
			setID 0 7523688681256759083;
			mqVersion 275;
			checksumv 0 3 1181732614 null  getNumChars 996 numChars 996 getNumTaxa 7 numTaxa 7   short true   bits 15   states 15   sumSquaresStatesOnly 149922.0 sumSquares 149922.0 longCompressibleToShort false usingShortMatrix true   NumFiles 1 NumMatrices 1 errorReportedDuringRun;
			mqVersion;
		endTell;
		getWindow;
		tell It;
			suppress;
			setResourcesState true false 367;
			setPopoutState 400;
			setExplanationSize 0;
			setAnnotationSize 0;
			setFontIncAnnot 0;
			setFontIncExp 0;
			setSize 700 464;
			setLocation 8 22;
			setFont SanSerif;
			setFontSize 10;
			getToolPalette;
			tell It;
			endTell;
			setActive;
			desuppress;
		endTell;
		endTell;
end;