#NEXUS
[written Wed Nov 09 15:44:58 CET 2011 by Mesquite  version 2.75 (build 564) at eb115.ebc.uu.se/130.238.155.115]

BEGIN TAXA;
	TITLE Taxa;
	DIMENSIONS NTAX=10;
	TAXLABELS
		Neurospora_crassa_8858 Neurospora_discreta_8579 Neurospora_hispaniola_8817 Neurospora_sitophila_1135 Neurospora_tetrasperma_965_bigA Neurospora_tetrasperma_965_small_a Neurospora_tetrasperma_P4492_bigA Neurospora_tetrasperma_P4492_small_a Neurospora_tetrasperma_RLM131_bigA Neurospora_tetrasperma_RLM131_small_a 
	;

END;


BEGIN CHARACTERS;
	TITLE  '"prd-4.nex"';
	DIMENSIONS  NCHAR=754;
	FORMAT DATATYPE = DNA GAP = - MISSING = ?;
	MATRIX
	Neurospora_crassa_8858                 GACATTCAAATAGAGGACCCCATCGTTTCGAACCGGCACTGCATCATCTTCACAGAGAACAAGGGCAACGACACCATCGCCGTATTAGAGGATCTGTCGAGTAACGGGACGTTTGTCAACGAGGCAATAGTGGGTCGCAACCGAAGAAGAGAGCTCCAAGAGCTAGATGAGATCGCCGTTCTTGGCACAGCCCGCTTCATCTTCCGATACCCCAAAAGTCGACACACCAGCGCTTTCAGGCAGCAGTACACCATGCTGCAGAAGCTGGGCAAGGGCCATTTCGCCGAGGTCTACCTGTGTGTGGAGAAGTCGACGGGTACACAGTATGCCGTCAAGGTATTCTCCAAGACTCCTGGCGTCGAGGAGAGGTCCAAGGACGAGGGTCTTCAGCAGGAAATTGCCGTGCTGATGGGGGTTAGTCACCCCAACGTCTTGTGTCTCAAAGATACTTTCAATGAGCCCAACGCCGTTCACCTAGTTCTGGAGCTGGCGCCAGGAGGTGAGCTCTTCAACTACATTGTCAAGAAGACCAAGCTTTCCGAGAACGAGTGCCGCAAGCTGTTTACCCAGCTTTTCCAGGGTGTCAAGTACTTGCACGACCGCAATATTGTCCACCGCGACATCAAACCCGAGAACATTCTGCTGGTCGATGATGACCTGCACGTCAAGCTGGCTGATTTTGGTCTTGCCAAAATCATCGGCGAGGAGTCCTTCACCACTACTCTCTGTGGTACGCCCAGTTATGTGGCACCGG
	Neurospora_discreta_8579               GACATCCAAATAGGAGACCCCATCGTTTCGAACCGGCACTGCATCATCTTCACAGAGAACAAGGGCAACGATACCGTCGCCGTATTAGAGGATCTGTCGAGTAACGGAACGTTCGTCAACGAGGCAATAGTGGGTCGCAACCGACGAAGAGAGCTCCAGGAGCTAGATGAGATCGCCGTTCTGGGCACAGCCCGCTTCATCTTCCGCTACCCCAAAAGTCGGCACACCAGCGCGTTCAGGCAGCAGTACACCATGCTTCAGAAGTTGGGCAAGGGCCATTTCGCCGAGGTCTACTTGTGTGTGGAGAAGTCGACGGGTTCACAGTATGCCGTCAAGGTATTCTCCAAGACCCCCGGCGTCGAAGAGAGGTCCAAGGACGAGGGTCTTCAGCAGGAAATTGCCGTGCTGATGGGGGTTAGTCACCCCAACGTTTTGTGTCTCAAAGATACCTTCAATGAGCCCAACGCCGTTCACCTAGTTCTTGAGCTGGCGGCAGGGGGCGAGCTCTTCAACTACATCGTCAAGAAGACCAAACTTTCCGAGAACGAGTGCCGCAAGCTGTTTACCCAGCTTTTCCAGGGTGTCAAGTACTTGCACGACCGCAACATTGTCCACCGCGACATCAAACCCGAGAACATTCTGCTGGTCGATGATGACCTGCACGTCAAGCTGGCTGATTTTGGTCTTGCCAAGATCATTGGCGAGGAATCCTTCACCACCACTCTCTGCGGTACGCCCAGTTATGTGGCACC??
	Neurospora_hispaniola_8817             GACATCCAAATAGAGGACCCCATCGTTTCGAACCGGCACTGCATCATCTTCACAGAGAACAAGGGCAACGACACCATCGCCGTATTAGAGGATCTGTCGAGTAACGGAACGTTCGTCAACGAGGCAATAGTGGGTCGCAACCGCCGGAGAGAGCTCCAAGAGCTAGATGAGATCGCCGTTCTTGGCACAGCCCGCTTCATCTTCCGATACCCCAAAAGTCGACACACCAGCGCATTCAGACAGCAGTACACCATGCTGCAGAAGTTGGGCAAGGGTCATTTCGCCGAGGTCTACTTGTGTGTGGAGAAGTCGACGGGTACACAGTATGCCGTCAAGGTCTTCTCCAAGACTCCTGGCGTCGAGGAGAGGTCCAAGGACGAGGGTCTTCAGCAGGAAATTGCCGTGCTGATGGGGGTTAGTCACCCCAACGTCTTGTGTCTCAAAGATACCTTCAATGAGCCCAACGCCGTTCACCTAGTCCTTGAGCTGGCGCCAGGAGGTGAGCTCTTCAACTACATCGTCAAGAAGACCAAGCTGTCCGAGAACGAGTGCCGCAAGTTGTTTACCCAGCTGTTCCAGGGTGTCAAGTACTTGCACGACCGCAACATTGTCCACCGCGACATCAAACCCGAGAACATTCTGCTGGTCGATGATGACCTGCACGTCAAGCTGGCGGATTTTGGTCTTGCCAAGATCATTGGCGAGGAGTCCTTCACCACCACTCT?TGCGGTACGCCCAGTTATGTGGCACCGG
	Neurospora_sitophila_1135              GACATCCAAATAGAGGACCCTATCGTTTCGAACCGGCACTGCATCATCTTCACAGAGAACAAGGGCAACGACACCATCGCCGTATTAGAGGATCTGTCGAGTAACGGAACCTTCGTCAACGAGGCAATAGTGGGTCGCAACCGACGGAGAGAGCTCCAAGAGCTAGATGAGATCGCCGTTCTTGGCACAGCCCGCTTCATCTTCCGATATCCCAAAAGCCGACACACCAGCGCTTTCAGGCAGCAGTACACCATGCTACAGAAGTTGGGCAAGGGCCATTTCGCCGAGGTCTACCTGTGTGTGGAGAAGTCGACGGGTTCACAGTATGCCGTCAAGGTATTCTCCAAGACTCCTGGCGTCGAGGAGCGGTCCAAGGACGAGGGTCTTCAGCAGGAAATTGCCGTGCTGATGGGGGTTAGTCACCCCAACGTCTTGTGTCTCAAAGATACCTTCAATGAGCCCAACGCCGTTCACCTAGTCCTTGAGCTGGCGCCAGGAGGTGAGCTCTTCAACTATATCGTCAAGAAGATCAAGCTTTCCGAGAACGAGTGCCGCAAGCTGTTTACCCAGCTTTTCCAGGGTGTCAAGTACTTGCACGACCGCAACATTGTCCACCGCGACATCAAACCCGAGAACATTCTACTGGTCGATGATGACCTGCACGTCAAGCTGGCTGATTTTGGTCTTGCCAAGATCATCGGCGAGGAGTCCTTCACCACCACTCTCTGTGGTACGCCTAGTTATGTGGCACCGG
	Neurospora_tetrasperma_965_bigA        GACATCCAAATAGAGGACCCCATTGTTTCGAACCGGCACTGCATCATCTTCACAGAGAACAAGGGCAACGATACCATCGCCGTATTAGAGGATCTGTCGAGTAACGGAACCTTCGTCAACGAGGCAATAGTGGGTCGCAACCGACGGAGAGAGCTCCAAGAGCTAGATGAGATCGCCGTTCTTGGCACAGCCCGCTTCATCTTCCGATACCCCAAAAGTCGACACACCAGCGCATTCAGACAGCAGTACACCATGCTGCAGAAGTTGGGCAAGGGCCACTTCGCCGAGGTCTACCTGTGTGTGGAGAAGTCGACGGGTACACAGTATGCCGTCAAGGTATTCTCCAAGACTCCTGGCGTCGAGGAGCGGTCCAAGGACGAGGGTCTTCAGCAGGAAATTGCCGTGCTGATGGGGGTTAGTCACCCCAACGTCTTGTGTCTCAAAGATACATTCAATGAGCCCAACGCCGTTCACCTAGTCCTTGAGCTGGCGCCAGGAGGTGAGCTCTTCAACTATATCGTCAAGAAGACCAAACTTTCCGAGAACGAGTGCCGCAAGCTGTTTATCCAGCTGTTCCAGGGTGTCAAGTACTTGCACGACCGCAACATTGTCCACCGCGACATCAAACCTGAAAACATTCTGCTGGTCGATGATGACCTGCACGTCAAGCTGGCTGATTTTGGTCTTGCCAAGATCATTGGCGAGGAGTCCTTCACCACCACTCTCTGCGGTACGCCCAGTTATGTGGCACCGG
	Neurospora_tetrasperma_965_small_a     GACATCCAAATAGAGGACCCCATTGTTTCGAACCGGCACTGCATCATCTTCACAGAGAACAAGGGCAACGATACCATCGCCGTATTAGAGGATCTGTCGAGTAACGGAACCTTCGTCAACGAGGCAATAGTGGGTCGCAACCGACGGAGAGAGCTCCAAGAGCTAGATGAGATCGCCGTTCTTGGCACAGCCCGCTTCATCTTCCGATACCCCAAAAGTCGACACACCAGCGCATTCAGACAGCAGTACACCATGCTGCAGAAGTTGGGCAAGGGCCACTTCGCCGAGGTCTACCTGTGTGTGGAGAAGTCGACGGGTACACAGTATGCCGTCAAGGTATTCTCCAAGACTCCTGGCGTCGAGGAGCGGTCCAAGGACGAGGGTCTTCAGCAGGAAATTGCCGTGCTGATGGGGGTTAGTCACCCCAACGTCTTGTGTCTCAAAGATACATTCAATGAGCCCAACGCCGTTCACCTAGTCCTTGAGCTGGCGCCAGGAGGTGAGCTCTTCAACTATATCGTCAAGAAGACCAAACTTTCCGAGAACGAGTGCCGCAAGCTGTTTATCCAGCTGTTCCAGGGTGTCAAGTACTTGCACGACCGCAACATTGTCCACCGCGACATCAAACCTGAAAACATTCTGCTGGTCGATGATGACCTGCACGTCAAGCTGGCTGATTTTGGTCTTGCCAAGATCATTGGCGAGGAGTCCTTCACCACCACTCTCTGCGGTACGCCCAGTTATGTGGCACCGG
	Neurospora_tetrasperma_P4492_bigA      GACATCCAAATAGAGGACCCCATCGTTTCGAACCGGCACTGCATCATCTTCACAGAGAACAAGGGCAACGACACCATCGCCGTATTAGAGGATCTGTCGAGTAACGGAACGTTCGTCAACGAGGCAATAGTGGGTCGCAATCGACGGAGAGAGCTCCAAGAGCTAGATGAGATCGCCGTTCTTGGCACAGCCCGCTTCATCTTCCGATACCCCAAAAGTCGACACACCAGCGCTTTCAGGCAGCAGTACACCATGCTGCAGAAGTTGGGCAAGGGCCATTTTGCCGAGGTCTACCTGTGTGTGGAGAAGTCGACGGGTTCACAGTATGCCGTCAAGGTATTCTCCAAGACTCCTGGCGTCGAGGAGCGGTCCAAGGACGAGGGTCTTCAGCAGGAAATTGCCGTGCTGATGGGGGTTAGTCACCCCAACGTCTTGTGTCTCAAAGATACCTTCAATGAGCCCAACGCCGTTCACCTAGTCCTTGAGCTGGCGCCAGGAGGCGAGCTCTTCAACTACATTGTCAAGAAGACCAAGCTTTCCGAGAACGAGTGCCGCAAGTTGTTTACCCAGCTTTTCCAGGGTGTCAAGTACTTGCACGACCGCAACATTGTCCACCGCGACATCAAACCCGAGAACATTCTGCTGGTCGACGATGACCTGCACGTTAAGCTGGCTGATTTTGGTCTTGCCAAGATCATTGGTGAGGAGTCCTTCACCACCACTCTCTGCGGTACGCCCAGTTATGTGGCACCGG
	Neurospora_tetrasperma_P4492_small_a   GACATCCAAATAGAGGACCCCATCGTTTCGAACCGGCACTGCATCATCTTCACAGAGAACAAGGGCAACGACACCATCGCCGTATTAGAGGATCTGTCGAGTAACGGAACGTTCGTCAACGAGGCAATAGTGGGTCGCAATCGACGGAGAGAGCTCCAAGAGCTAGATGAGATCGCCGTTCTTGGCACAGCCCGCTTCATCTTCCGATACCCCAAAAGTCGACACACCAGCGCTTTCAGGCAGCAGTACACCATGCTGCAGAAGTTGGGCAAGGGCCATTTTGCCGAGGTCTACCTGTGTGTGGAGAAGTCGACGGGTTCACAGTATGCCGTCAAGGTATTCTCCAAGACTCCTGGCGTCGAGGAGCGGTCCAAGGACGAGGGTCTTCAGCAGGAAATTGCCGTGCTGATGGGGGTTAGTCACCCCAACGTCTTGTGTCTCAAAGATACCTTCAATGAGCCCAACGCCGTTCACCTAGTCCTTGAGCTGGCGCCAGGAGGCGAGCTCTTCAACTACATTGTCAAGAAGACCAAGCTTTCCGAGAACGAGTGCCGCAAGTTGTTTACCCAGCTTTTCCAGGGTGTCAAGTACTTGCACGACCGCAACATTGTCCACCGCGACATCAAACCCGAGAACATTCTGCTGGTCGACGATGACCTGCACGTTAAGCTGGCTGATTTTGGTCTTGCCAAGATCATTGGTGAGGAGTCCTTCACCACCACTCTCTGCGGTACGCCCAGTTATGTGGCACCGG
	Neurospora_tetrasperma_RLM131_bigA     GACATCCAAATAGAGGACCCCATCGTTTCGAACCGGCACTGCATCATCTTCACAGAGAACAAGGGCAACGACACCATCGCCGTATTAGAGGATCTGTCGAGTAACGGAACGTTCGTCAACGAGGCAATAGTGGGTCGCAATCGACGGAGAGAGCTCCAAGAGCTAGATGAGATCGCCGTTCTTGGCACAGCCCGCTTCATCTTCCGATACCCCAAAAGTCGACACACCAGCGCTTTCAGGCAGCAGTACACCATGCTGCAGAAGTTGGGCAAGGGCCATTTTGCCGAGGTCTACCTGTGTGTGGAGAAGTCGACGGGTTCACAGTATGCCGTCAAGGTATTCTCCAAGACTCCTGGCGTCGAGGAGCGGTCCAAGGACGAGGGTCTTCAGCAGGAAATTGCCGTGCTGATGGGGGTTAGTCACCCCAACGTCTTGTGTCTCAAAGATACCTTCAATGAGCCCAACGCCGTTCACCTAGTCCTTGAGCTGGCGCCAGGAGGCGAGCTCTTCAACTACATTGTCAAGAAGACCAAGCTTTCCGAGAACGAGTGCCGCAAGTTGTTTACCCAGCTTTTCCAGGGTGTCAAGTACTTGCACGACCGCAACATTGTCCACCGCGACATCAAACCCGAGAACATTCTGCTGGTCGACGATGACCTGCACGTTAAGCTGGCTGATTTTGGTCTTGCCAAGATCATTGGTGAGGAGTCCTTCACCACCACTCTCTGCGGTACGCCCAGTTATGTGGCACCGG
	Neurospora_tetrasperma_RLM131_small_a  GACATCCAAATAGAGGACCCCATCGTTTCGAACCGGCACTGCATCATCTTCACAGAGAACAAGGGCAACGACACCATCGCCGTATTAGAGGATCTGTCGAGTAACGGAACGTTCGTCAACGAGGCAATAGTGGGTCGCAATCGACGGAGAGAGCTCCAAGAGCTAGATGAGATCGCCGTTCTTGGCACAGCCCGCTTCATCTTCCGATACCCCAAAAGTCGACACACCAGCGCTTTCAGGCAGCAGTACACCATGCTGCAGAAGTTGGGCAAGGGCCATTTTGCCGAGGTCTACCTGTGTGTGGAGAAGTCGACGGGTTCACAGTATGCCGTCAAGGTATTCTCCAAGACTCCTGGCGTCGAGGAGCGGTCCAAGGACGAGGGTCTTCAGCAGGAAATTGCCGTGCTGATGGGGGTTAGTCACCCCAACGTCTTGTGTCTCAAAGATACCTTCAATGAGCCCAACGCCGTTCACCTAGTCCTTGAGCTGGCGCCAGGAGGCGAGCTCTTCAACTACATTGTCAAGAAGACCAAGCTTTCCGAGAACGAGTGCCGCAAGTTGTTTACCCAGCTTTTCCAGGGTGTCAAGTACTTGCACGACCGCAACATTGTCCACCGCGACATCAAACCCGAGAACATTCTGCTGGTCGACGATGACCTGCACGTTAAGCTGGCTGATTTTGGTCTTGCCAAGATCATTGGTGAGGAGTCCTTCACCACCACTCTCTGCGGTACGCCCAGTTATGTGGCACCGG

;



END;

BEGIN ASSUMPTIONS;
	TYPESET * UNTITLED   =  unord:  1 -  754;

END;

BEGIN TREES;
	Title '"prd4.tre"';
	LINK Taxa = Taxa;
	TRANSLATE
		1 Neurospora_crassa_8858,
		2 Neurospora_discreta_8579,
		3 Neurospora_hispaniola_8817,
		4 Neurospora_sitophila_1135,
		5 Neurospora_tetrasperma_965_bigA,
		6 Neurospora_tetrasperma_965_small_a,
		7 Neurospora_tetrasperma_P4492_bigA,
		8 Neurospora_tetrasperma_P4492_small_a,
		9 Neurospora_tetrasperma_RLM131_bigA,
		10 Neurospora_tetrasperma_RLM131_small_a;
	TREE tree_1 = (2:0.03067,(1:0.02588,(4:0.01931,((((7:0.00146,8:0.00143):0.0,9:0.00141):0.0,10:0.00143):0.01315,(3:0.01385,(5:0.00147,6:0.00147):0.01911):0.00781):0.0):0.0):0.01045);

END;


BEGIN CODONS;
	CODESET * UNTITLED   =  universal:  1 -  754;


END;

BEGIN MESQUITECHARMODELS;
	ProbModelSet * UNTITLED   =  'Jukes-Cantor':  1 -  754;
END;

Begin MESQUITE;
		MESQUITESCRIPTVERSION 2;
		TITLE AUTO;
		tell ProjectCoordinator;
		timeSaved 1320849898539;
		getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa;
		tell It;
			setID 0 1851293044486619370;
			tell It;
				attachments ;
			endTell;
		endTell;
		getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters;
		tell It;
			setID 0 7745111575934629283;
			mqVersion 275;
			checksumv 0 3 2925260883 null  getNumChars 754 numChars 754 getNumTaxa 10 numTaxa 10   short true   bits 15   states 15   sumSquaresStatesOnly 145084.0 sumSquares 145084.0 longCompressibleToShort false usingShortMatrix true   NumFiles 1 NumMatrices 1 errorReportedDuringRun;
			mqVersion;
		endTell;
		getWindow;
		tell It;
			suppress;
			setResourcesState true false 367;
			setPopoutState 400;
			setExplanationSize 0;
			setAnnotationSize 0;
			setFontIncAnnot 0;
			setFontIncExp 0;
			setSize 700 464;
			setLocation 8 22;
			setFont SanSerif;
			setFontSize 10;
			getToolPalette;
			tell It;
			endTell;
			setActive;
			desuppress;
		endTell;
		endTell;
end;