#NEXUS
[written Wed Nov 09 15:47:13 CET 2011 by Mesquite  version 2.75 (build 564) at eb115.ebc.uu.se/130.238.155.115]

BEGIN TAXA;
	TITLE Taxa;
	DIMENSIONS NTAX=10;
	TAXLABELS
		Neurospora_crassa_8858 Neurospora_discreta_8579 Neurospora_hispaniola_8817 Neurospora_sitophila_1135 Neurospora_tetrasperma_965_bigA Neurospora_tetrasperma_965_small_a Neurospora_tetrasperma_P4492_bigA Neurospora_tetrasperma_P4492_small_a Neurospora_tetrasperma_RLM131_bigA Neurospora_tetrasperma_RLM131_small_a 
	;

END;


BEGIN CHARACTERS;
	TITLE  'Matrix in file "ro10.nex"';
	DIMENSIONS  NCHAR=664;
	FORMAT DATATYPE = DNA GAP = - MISSING = ?;
	MATRIX
	Neurospora_crassa_8858                 ????????????????CCTCGAATCCCGTCTCCGGCGCATCGAGCACATCCTCTACGGCCCCTCCGACCCTCCAACGCAAGCGCCCTCTTCCTCCGCAACGACCTCTCTTGCCCAACTTGAACACCGCTTCAATCTGCTCATCCGGCGCTTTCGTGTATACGCCGAGCTGCTTAAAATTCGTACGTCCCTCCCTGTCTCCCACC------TTGCCATTTCGCATCACTACAAAGCTAACCAGAGGCCCCAAACAGACAAAGCCAACCCCACACTCTTCCACACCTCCCCCTCGGCCGATCAAAAGCTCCCACCAACGGACCTCCCGCCTGCTGCCATTCTCGCGACAGTTCTCTCCTACGCCTCCCAGTTTCCCCAGACCGCGTCCGCCCTAGTTGCAGCCGCCCCAGACAACACCATTGAATCCGCGATTCCCGACAGCAAACTCTCGGCCGAGTTGGCGAGCTTGATACCCAGGATGAAGGGACTGGAGGCCATGCAGTTGGCGCAAGAGGCGGAAATAGCGGAGCTCAGGGAGAGGAGCGAAGCCGTGATGAAGGCATGGTATGAGAAGAGGGTGCTGGGGTACGGCAAGTTTGTGGCGGAGGGTGAAGCGAGGGTGGAAAAGTGCGAATTGAGGGTAAGGAGAGCGG?????????????
	Neurospora_discreta_8579               TAGCGACCATCTCCCTCCTCGAATCTCGTCTCCGGCGAATTGAGCATATTCTGTACGGCCCCTCCGACCTACCAACCCAAGCGCCCTCCTCCTCCGCAACGACCTCTCTTGCCCAGCTCGAACACCGCTTCAATTTGCTCATCCGGCGCTTTCGCGTGTACGCCGAATTGCTCAAGATTCGTACGTTCCTCCCCTTCTCCATCCCCCCATTGGCCATCTCCCATTGCTTCATAGCTAACCAGAGGCCTTGAATAGACAAGGCCAACCCCACACTTTTCCACACCTCCCTCTCGGCCGATCAAAAGCTCCCACCAACAGAGCTCCCCCCGGCTGCCATTCTCGCGACAGTCCTCTCCTTCGCCTCCCAGTTTCCCCAGACCGCGTCCGCCCTTGTAGCAGTCGCCCCAGACAACACCATCGAATCCGCGATCCCCGACACAAAACTCTCGGCCGAGTTGGCGAGCTTGATACCAAGGATGAAAGGACTGGAGGCCATGCAGTTGGCGCAAGAGGCGGAAATAGCGGAGCTCAGGGAGAGAAGCGAAGCGGTGATGAAGGCGTGGTATGAGAAGAGGGTGCTGGGGTATGGGAAGTTCGTGGCGGAGAGCGAAGGGAGGGTAGAGAAGTGCGAGTTGAGAGTGAGGAGAGCGGAGAGGGTGAGGGA
	Neurospora_hispaniola_8817             ????????????????CCTCGAATCCCGTCTCCGGCGAATCGAGCACATCCTCTACGGCCCCTCCGATCCTCCAACACAAGCGCCCTCTTCCTCCGCAACGGCCTCTCTTGCCCAGCTCGAACACCGCTTCAATCTGCTCATCCGGCGCTTTCGCGTGTACGCCGAGCTGCTCAAGATTCGTACGTTCCTCTCC----------------TTGCCATTTCCCACTGCTTCAAAGCTAACTAGAGGTCCCAAACAGACAAAGCCAACCCCACACTCTTCCACACCTCCCCCTCGGCCGATCAAAAGCTCCCGCCAACGGACCTCCCGCCTGCTGCCATTCTCGCGACAGTCCTCTCCTACGCCTCCCAGTTCCCCCAGACCGCGTCCGCCCTAGTTGCAGCCGCCCCAGACAACACCATTGAATCCGCGATTCCCGACAGCAAACTCTCGGCCGAATTGGCGAGCTTGATACCAAGGATGAAGGGACTGGAGGCCATGCAGTTGGCGCAAGAGGCGGAAATAGCGGAGCTCAGGGAGAGGAGCGAAGCCGTGATGAAGGCATGGTATGAGAAGAGGGTGCTGGGGTACGGCAAGTTTGTGGCGGAGGGTGAAGCGAGGGTGGAAAAGTGCGAATTGAGGGTGAGGAGAGCGG?????????????
	Neurospora_sitophila_1135              ????????????????CCTCGAATCCCGTCTCCGGCGAATCGAGCACATCCTCTACGGCCCCTCCGATCCTCCCACACAAGCGCCCTCTTCCTCCGCAACGGCCTCTCTTGCCCAGCTCGAACACCGCTTCAATCTGCTCATCCGGCGCTTTCGCGTGTACGCCGAGCTGCTCAAGATTCGTACGTTCCTCTCC----------------TTGCCATTTACCATTACTTCAAAGCTAACTGGAGGCTTCAAACAGACAAAGCCAATCCCACACTCTTCCACACCTCCCCCTCGGCCGAACAAAAGCTCCCACCAACGGACCTCCCGCTTGCTGCCATTCTCGCGACAGTCCTCTCCTACGCCCCCCAGTTTCCCCAGACCGCGTCCGCCCTAGTTGCAGCCGCCCCAGACAACACCATTGAATCCGCGATTCCCGACAGCAAACTCTCGGCCGAGTTGGCGAGCCTGATACCCAGGATGAAGGGACTGGAGGCCATGCAGTTGGCGCAAGAGGCGGAAATCGCGGAGCTCAGGGAGAGGAGCGAAGCGGTGATGAAGGCGTGGTATGAGAAGAGGGTGCTGGGGTACGGCAAGTTTGTGGCGGAGGGTGAAGCGAGGGTGGAAAAGTGCGAATTGAGGGTAAGGAGAGCGG?????????????
	Neurospora_tetrasperma_965_bigA        TAGCCACCATCTCCCTCCTCGAATCCCGTCTCCGGCGAATCGAGCACATCCTCTACGGCCCCTCCGACCCTCCAACACAAGCGCCCTCTTCCTCCGCAACGGCCTCTCTTGCCCAGCTCGAACACCGCTTCAATCTGCTCATCCGGCGCTTTCGCGTGTACGCCGAGCTGCTCAAGATTCGTACGTTCCTCTCC----------------TTGCCATTTCCCAGTACTTCAAAGCTAACTAGAGGCTTCAAACAGACAAAGCCAATCCCACACTCTTCCACACCTCCCCCTCGGCCGAACAAAAGCTCCCACCAACGGACCTCCCGCCTGCTGCCATTCTCGCGACAGTCCTCTCCTACGCCTCCCAGTTTCCCCAGACCGCGTCCGCCCTAGTTGCAGCCGCCCCAGACAACACCATTGAATCCGCGATTCCCGACAGCAAACTCTCGGCCGAGTTGGCGAGCTTGATACCAAGGATGAAGGGACTGGAGGCCATGCAGTTGGCGCAAGAGGCGGAAATAGCGGAGCTCAGGGAGAGGAGCGAAGCGGTGATGAAGGCGTGGTATGAGAAGAGGGTGCTGGGGTACGGCAAGTTTGTGGCGGAGGGTGAAGCGAGGGTGGAAAAGTGCGAATTGAGGGTAAGGAGAGCCGAGAGGGTGAGGGA
	Neurospora_tetrasperma_965_small_a     TAGCCACCATCTCCCTCCTCGAATCCCGTCTCCGGCGAATCGAGCACATCCTCTACGGCCCCTCCGACCCTCCAACACAAGCGCCCTCTTCCTCCGCAACGGCCTCTCTTGCCCAGCTCGAACACCGCTTCAATCTGCTCATCCGGCGCTTTCGCGTGTACGCCGAGCTGCTCAAGATTCGTACGTTCCTCTCC----------------TTGCCATTTCCCAGTACTTCAAAGCTAACTAGAGGCTTCAAACAGACAAAGCCAATCCCACACTCTTCCACACCTCCCCCTCGGCCGAACAAAAGCTCCCACCAACGGACCTCCCGCCTGCTGCCATTCTCGCGACAGTCCTCTCCTACGCCTCCCAGTTTCCCCAGACCGCGTCCGCCCTAGTTGCAGCCGCCCCAGACAACACCATTGAATCCGCGATTCCCGACAGCAAACTCTCGGCCGAGTTGGCGAGCTTGATACCAAGGATGAAGGGACTGGAGGCCATGCAGTTGGCGCAAGAGGCGGAAATAGCGGAGCTCAGGGAGAGGAGCGAAGCGGTGATGAAGGCGTGGTATGAGAAGAGGGTGCTGGGGTACGGCAAGTTTGTGGCGGAGGGTGAAGCGAGGGTGGAAAAGTGCGAATTGAGGGTAAGGAGAGCCGAGAGGGTGAGGGA
	Neurospora_tetrasperma_P4492_bigA      TAGCCACCATCTCCCTCCTCGAATCCCGTCTCCGGCGAATCGAGCACATCCTCTACGGCCCCTCCGACCCTCCAACACAAGCGCCCTCTTCCTCTGCAACGGCCTCTCTTGCCCAGCTCGAACACCGCTTCAATCTGCTCATCCGGCGCTTTCGCGTGTACGCCGAGCTGCTCAAGATTCGTACGTTTCTCTCC----------------TTGCCATTTGCCATTACTTTAAAGCTAACTAGAGGCTTCAAACAGACAAAGCCAATCCCACACTCTTCCACACCTCCCCCTCGGCCGAACAAAAGCTCCCACCAACGGACCTCCCGCCTGCTGCCATTCTCGCGACAGTCCTCTCCTACGCCTCCCAGTTTCCCCAGACCGCGTCCGCCCTAGTTGCAGCCGCCCCAGACAACACCATTGAATCCGCGATTCCCGACAGCAAACTCTCGGCCGAGTTGGCGAGCTTGATACCCAGGATGAAGGGACTGGAGGCCATGCAGTTGGCGCAAGAGGCGGAAATAGCGGAGCTCAGGGAGAGGAGCGAAGCGGTGATGAAGGCGTGGTATGAGAAGAGGGTGCTGGGATACGGCAAGTTCGTGGCGGAGGGTGAAGCGAGGGTGGAAAAGTGCGAATTGAGGGTAAGGAGAGCGGAGAGGGTGAGGGA
	Neurospora_tetrasperma_P4492_small_a   TAGCCACCATCTCCCTCCTCGAATCCCGTCTCCGGCGAATCGAGCACATCCTCTACGGCCCCTCCGACCCTCCAACACAAGCGCCCTCTTCCTCTGCAACGGCCTCTCTTGCCCAGCTCGAACACCGCTTCAATCTGCTCATCCGGCGCTTTCGCGTGTACGCCGAGCTGCTCAAGATTCGTACGTTTCTCTCC----------------TTGCCATTTGCCATTACTTTAAAGCTAACTAGAGGCTTCAAACAGACAAAGCCAATCCCACACTCTTCCACACCTCCCCCTCGGCCGAACAAAAGCTCCCACCAACGGACCTCCCGCCTGCTGCCATTCTCGCGACAGTCCTCTCCTACGCCTCCCAGTTTCCCCAGACCGCGTCCGCCCTAGTTGCAGCCGCCCCAGACAACACCATTGAATCCGCGATTCCCGACAGCAAACTCTCGGCCGAGTTGGCGAGCTTGATACCCAGGATGAAGGGACTGGAGGCCATGCAGTTGGCGCAAGAGGCGGAAATAGCGGAGCTCAGGGAGAGGAGCGAAGCGGTGATGAAGGCGTGGTATGAGAAGAGGGTGCTGGGATACGGCAAGTTCGTGGCGGAGGGTGAAGCGAGGGTGGAAAAGTGCGAATTGAGGGTAAGGAGAGCGGAGAGGGTGAGGGA
	Neurospora_tetrasperma_RLM131_bigA     TAGCCACCATCTCCCTCCTCGAATCCCGTCTCCGGCGAATCGAGCACATCCTCTACGGCCCCTCCGATCCTCCAACACAAGCGCCCTCTTCCTCCGCAACGGCCTCTCTTGCCCAGCTCGAACACCGCTTCAATCTGCTCATCCGGCGCTTTCGCGTGTACGCCGAGCTGCTCAAGATTCGTACGTTCCTCTCC----------------TTGCCATTTACCATTACTTCAAAGCTAACTAGAGGCTTCAAACAGACAAAGCCAATCCCACACTCTTCCACACCTCCCCCTCGGCCGAACAAAAGCTCCCACCAACGGACCTCCCGCCTGCTGCCATTCTCGCGACAGTCCTCTCCTACGCTTCCCAGTTTCCCCAGACCGCGTCCGCCCTAGTTGCAGCCGCCCCAGACAACACCATTGAATCCGCGATTCCCGACAGCAAACTCTCGGCCGAGTTGGCGAGCTTGATACCAAGGATGAAGGGACTGGAGGCCATGCAGTTGGCGCAAGAGGCGGAAATAGCGGAGCTCAGGGAGAGGAGCGAAGCGGTGATGAAGGCGTGGTATGAGAAGAGGGTGCTGGGGTACGGCAAGTTCGTGGCGGAGGGTGAAGCGAGGGTGGAAAAGTGCGAATTGAGGGTAAGGAGAGCGGAGAGGGTGAGGGA
	Neurospora_tetrasperma_RLM131_small_a  TAGCCACCATCTCCCTCCTCGAATCCCGTCTCCGGCGAATCGAGCACATCCTCTACGGCCCCTCCGATCCTCCAACACAAGCGCCCTCTTCCTCCGCAACGGCCTCTCTTGCCCAGCTCGAACACCGCTTCAATCTGCTCATCCGGCGCTTTCGCGTGTACGCCGAGCTGCTCAAGATTCGTACGTTCCTCTCC----------------TTGCCATTTACCATTACTTCAAAGCTAACTAGAGGCTTCAAACAGACAAAGCCAATCCCACACTCTTCCACACCTCCCCCTCGGCCGAACAAAAGCTCCCACCAACGGACCTCCCGCCTGCTGCCATTCTCGCGACAGTCCTCTCCTACGCTTCCCAGTTTCCCCAGACCGCGTCCGCCCTAGTTGCAGCCGCCCCAGACAACACCATTGAATCCGCGATTCCCGACAGCAAACTCTCGGCCGAGTTGGCGAGCTTGATACCAAGGATGAAGGGACTGGAGGCCATGCAGTTGGCGCAAGAGGCGGAAATAGCGGAGCTCAGGGAGAGGAGCGAAGCGGTGATGAAGGCGTGGTATGAGAAGAGGGTGCTGGGGTACGGCAAGTTCGTGGCGGAGGGTGAAGCGAGGGTGGAAAAGTGCGAATTGAGGGTAAGGAGAGCGGAGAGGGTGAGGGA

;



END;

BEGIN ASSUMPTIONS;
	TYPESET * UNTITLED   =  unord:  1 -  664;

END;

BEGIN TREES;
	Title 'Trees from "ro10.tre"';
	LINK Taxa = Taxa;
	TRANSLATE
		1 Neurospora_crassa_8858,
		2 Neurospora_discreta_8579,
		3 Neurospora_hispaniola_8817,
		4 Neurospora_sitophila_1135,
		5 Neurospora_tetrasperma_965_bigA,
		6 Neurospora_tetrasperma_965_small_a,
		7 Neurospora_tetrasperma_P4492_bigA,
		8 Neurospora_tetrasperma_P4492_small_a,
		9 Neurospora_tetrasperma_RLM131_bigA,
		10 Neurospora_tetrasperma_RLM131_small_a;
	TREE tree_1 = (2:0.0671,((1:0.0373,3:0.01486):0.00778,(((4:0.01378,(7:0.00161,8:0.00159):0.01224):0.00344,(9:0.00164,10:0.00164):0.00424):0.00422,(5:0.00161,6:0.0016):0.00563):0.00766):0.04261);

END;


BEGIN CODONS;
	CODESET * UNTITLED   =  universal:  1 -  664;


END;

BEGIN MESQUITECHARMODELS;
	ProbModelSet * UNTITLED   =  'Jukes-Cantor':  1 -  664;
END;

Begin MESQUITE;
		MESQUITESCRIPTVERSION 2;
		TITLE AUTO;
		tell ProjectCoordinator;
		timeSaved 1320850033785;
		getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa;
		tell It;
			setID 0 6563075106355958998;
			tell It;
				attachments ;
			endTell;
		endTell;
		getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters;
		tell It;
			setID 0 2724019782819662654;
			mqVersion 275;
			checksumv 0 3 1295416995 null  getNumChars 664 numChars 664 getNumTaxa 10 numTaxa 10   short true   bits 15   states 15   sumSquaresStatesOnly 112661.0 sumSquares 112661.0 longCompressibleToShort false usingShortMatrix true   NumFiles 1 NumMatrices 1 errorReportedDuringRun;
			mqVersion;
		endTell;
		getWindow;
		tell It;
			suppress;
			setResourcesState true false 367;
			setPopoutState 400;
			setExplanationSize 0;
			setAnnotationSize 0;
			setFontIncAnnot 0;
			setFontIncExp 0;
			setSize 700 464;
			setLocation 8 22;
			setFont SanSerif;
			setFontSize 10;
			getToolPalette;
			tell It;
			endTell;
			setActive;
			desuppress;
		endTell;
		endTell;
end;