#NEXUS
[written Wed Nov 09 15:17:22 CET 2011 by Mesquite  version 2.75 (build 564) at eb115.ebc.uu.se/130.238.155.115]

BEGIN TAXA;
	TITLE Taxa;
	DIMENSIONS NTAX=7;
	TAXLABELS
		Neurospora_crassa_8863 Neurospora_discreta_8579 Neurospora_hispaniola_8815 Neurospora_sitophila_412 Neurospora_tetrasperma_965_small_a Neurospora_tetrasperma_P4492_small_a Neurospora_tetrasperma_RLM131_small_a 
	;

END;


BEGIN CHARACTERS;
	TITLE  '"mat_a.nex"';
	DIMENSIONS  NCHAR=842;
	FORMAT DATATYPE = DNA GAP = - MISSING = ?;
	MATRIX
	Neurospora_crassa_8863                 ATGGACGGTAACTCGACGCACCCCGCTCCAAACCTCAAGACTACTATGGCTTGGTCGCGCATCTCAAACCAACTCGGTCACTGGAATGACCGCAAGGTCATTGCCATTCCTCTGAGCGACTTCCTTAACACCCACCCTGACATTCAGTCTGGCATCATCGCCGAGTTCAAGTAAGTGTCCTCACCCATTTCTCATCCTACCTTGTACTGACCATTTGCACTAGGAAAGCGACTGGCGAAGAGGGCATGTTTGCCCGCGATCCTGAATCATTGGGAATCATGCTTCTTGGTCCCGTCAAGCTGTTCAAGCCCGACAGTGTCGTCGTCGACGGCAACCTGTTCTGGGATCCCAAGGGCATCCATGCTTCGGCACCCAAGGAGCAGCAGAAGAAGGCCAAGATTCCTCGCCCTCCCAATGCCTACATCCTGTACCGTAAGGACCATCATCGTGAGATCCGCGAGCAGAATCCCGGACTTCACAATAACGAGATTTGTAAGTTTCTTGTCATCATGATTGAAAATCTTTGGCCTTGAGACTAACCTCACTTAGCGGTCATTGTCGGCAACATGTGGCGTGATGAGCAGCCGCACATTCGCGAGAAATATTTCAACATGTCCAATGAGATCAAGACCAGACTGTTGCTGGAGAATCCCGACTATCGCTACAATCCGCGTCGGTCTCAAGACATTCGCAGGCGCGTCTCGCCGTATCTCAAGATCAAGCTCCTCAACTACGACGTTAATGGCAACCTTCTTTGGGGCACCGTCAACGCCGAGGATGCTGCGCTGATTCGGACTCATTTCCATGGAGTCGTTCGTGTTGAGGAAATGGATGATGGCTGC
	Neurospora_discreta_8579               ATGGACGGCGACCTGACGCACCCCGCTCCGACCGTCAAGACCACTTTGGCTTGGTCGCGCATCTCGAACCAACTCGGTCACTGGAACGACCGCAAGGTCATTGCCATTCCTTTGAGCGATTTCCTTCACACCCACCCTGACATTCAGTCTGGCATCATCACCGAGTTCAAGTAAGTGTCCTCACTCATTTCTCACCTTACCTTGTACTGACCATTTGCACTAGGAAAGCGACTGGTGAAGAGGGCATGTTCGCTCGCGATCCCGAGTCACTGGGAATCATGCTTCTTGGCCCCGTCAAGCTGTTCAAGCCCGATAGTGTCGTCGTCGACGGCAACCTGTTCTGGGATCCTAAGGGCATCCATGCTTCGGCACCCAAGGAGCAGCAGAAGAAGGCCAAGATCCCTCGCCCTCCCAATGCCTACATCTTGTATCGTAAGGACCATCATCGCGAGATCCGCGAGCAGAACCCCGGACTTCACAACAACGAGATTTGTAAGTATCTTGTCATCATGAACAATGATCTTTGGCCCTGAGACTAACCTCACCTAGCGGTCATCGTCGGCAACATGTGGCGTGATGAGCAGCCGCACATTCGCGAGAAATATTTTAACATGTCCAATGAGATCAAGACCAGAATGTTATTGGAGCATCCCGACTATCGCTACAATCCACGTCGGTCTCAAGACATTCGCAGGCGCGTCTCACCGTATCTCAAGATCAAGCTCCTTAACTATGACGTTAATGGCAACCTTCTTTGGGGCACTGTCAACGCCGAGGATGCTGCCCTAATTCGGACTCACTTCCATGGAGTCGTTCGTGTTGAGGAAATGGATGATGGCTGC
	Neurospora_hispaniola_8815             ATGGACGGCAACTCGACCCCCCCCCCTCCAAACGTCAAGACTACTTTGGCTTGGTCGCGCATCTCAAACCAACTCGGTCACTGGAATGACCGCAAGGTCATTGCCATTCCTCTGAGCGACTTCCTTTGCACCCACCCTGACATTCAGTCCGGCATCATCGCCGAGTTCAAGTAAGTGTCCTCACCCATTTCTCACCCTACCTTGTACTGACCATTTGCACTAGGAAAGCGACTGGTGAAGAGGGCATGTTTGCTCGCGATCCTGAATCATTGGGAATCATGCTTCTTGGTCCCGTCAAGCTGTTCAAGCCCGACAGTGTCGTCGTCGACGGCAACCTGTTCTGGGATCCCAAGGGCATCCATGCTTCGGCACCCAAGGAGCAGCAGAAGAAGGCCAAGATCCCTCGCCCTCCCAATGCCTACATCTTGTACCGTAAGGACCATCATCGTGAGATCCGCGAGCAGAATCCCGGACTTCACAATAACGAGATTTGTAAGTTTCTTGTCATCATGATCGAATATCTTTGGCCTTGAGACTAACCTCACTTAGCGGTCATCGTCGGCAACATGTGGCGTGATGAGCAGCCGCACATTCGCGAGAAATATTTCAACATGTCCAATGAGATCAAGACCAGAATGTTGCTGGAACATCCCGAGTATCGCTACAATCCGCGTCGGTCTCAAGACATTCGCAGGCGCGTCTCGCCGTATCTCAAGATCAAGCTCCTCAACTATGACGTTAATGGCAATCTTCTTTGGGGAACCGTCAACGCCGAGGATGCTGCGCTGATTCGGACCCACTTCCATGGAGTCGTTCGTGTTGAGGAAATGGATGATGGCTGC
	Neurospora_sitophila_412               ATGGACGGCAACTCGACCCTCCCCGCTCCAAACGTCAAGACTACTTTGGCTTGGTCGCGCATCTCAAACCAACTCGGTCACTGGAATGACCGCAAGGTCATTGCCATTCCTCTGAGCGACTTCCTTTGCACCCACCCTGACATTCAGTCTGGCATCATCGCCGAGTTCAAGTAAGTGTCCTCACCCATTTCTCACCCTACCTTATACTGACCATTTGCACTAGAAAAGCGACTGGTGAAGAGGGCATGTTTGCTCGCGATCCTGAATCGTTGGGAATTATGCTTCTTGGTCCCGTCAAGCTGTTCAAGCCCGACAGTGTCGTCGTCGACGGCAACCTGTTCTGGGATCCCAAGGGCATCCATGCTTCGGCACCCAAGGAGCAGCAGAAGAAGGCCAAGATCCCTCGCCCTCCCAATGCCTACATCTTGTACCGTAAGGACCATCATCGTGAGATCCGCGAGCAGAATCCTGGACTTCACAATAACGAGATTTGTAAGTTTCTTGTCATCATGATCGAAGATCTTCGGCCTTGAGACTAACCTCACTTAGCGGTCATCGTCGGCAACATGTGGCGTGATGAGCAGCCGCACATTCGCGAGAAATATTTCAACATGTCCAATGAGATCAAGACCAGAATGTTGCTGGAACATCCCGACTATCGCTACAATCCGCGTCGGTCTCAAGACATTCGCAGGCGCGTCTCGCCGTATCTCAAGATCAAGCTCCTCAACTATGACGTTAATGGCAACCTTCTTTGGGGAACCGTCAACGCCGAGGATGCTGCGCTGATTCGGACTCACTTCCATGGAGTCGTTCGTGTTGAGGAAATGGATGATGGCTGC
	Neurospora_tetrasperma_965_small_a     ATGGACGGTAACTCGACGCACCCCGCTCCAAACCTCAAGACTACTATGGCTTGGTCGCGCATCTCAAACCAACTCGGTCACTGGAATGACCGCAAGGTCATTGCCATTCCTCTGAGCGATTTCCTTGGTACCCACCCTGACATTCAGTCTGGCATCATCGCCGAGTTCAAGTAAGTGTCCTCACCCATTTCTCACCCTACCTTGTACTGACCATTTGCACTAGGAAAGCGACTGGCGAAGAGGGCATGTTTGCCCGCGATCCTGAATCATTGGGAATCATGCTTCTTGGTCCCGTCAAGCTGTTCAAGCCTGACAGTGTCGTCGTCGACGGCAACCTGTTCTGGGATCCCAAGGGCATCCATGCTTCGGCACCCAAGGAGCAGCAGAAGAAGGCCAAGATCCCTCGCCCTCCCAATGCCTACATCTTGTACCGTAAGGACCATCATCGTGAGATCCGCGAGCAGAATCCCGGACTTCACAATAACGAGATTTGTAAGTTTCTTGTCATCATGATCGAAGATCTTTGGCCATGAGACTAACCTCACTTAGCGGTCATCGTCGGCAACATGTGGCGTGATGAGCAGCCGCACATTCGCGAGAAATATTTCAACATGTCCAATGAGATCAAGACCAGACTGTTGCTGGAGAATCCCGACTATCGCTACAATCCGCGTCGGTCTCAAGACATTCGCA-GCGCGTCTCGCCGTATCTCAAGATCAAGCTCCTCAACTACGACGTT-ATGGCAACCTTCTTTGGGGCACCGTCAACGCCGAGGATGCTGCGCTGATTCGGAC??????????????????????????????????????????????
	Neurospora_tetrasperma_P4492_small_a   ?TGGACGGCAACTCGACCCCCCCGGCTCCAAACGTCAAGACTACTTTGGCTTGGTCGCGCATCTCAAACCAACTCGGTCACTGGAATGACCGCAAGGTCATTGCCATTCCTCTGAGCGACTTCCTTTGCACCCACCCTGACATTCAGTCTGGCATCATCGCCGAGTTCAAGTAAGTGTCCTCACCCATTTCTCACCCTACCTTGTACTGACCATTTGCACTAGGAAAGCGACTGGTGAAGAGGGCATGTTTGCTCGCGATCCTGAATCATTGGGAATTATGCTTCTTGGTCCCGTCAAGCTGTTCAAGCCCGACAGTGTCGTCGTCGACGGCAACCTGTTCTGGGATCCCAAGGGCATCCATGCTTCGGCACCCAAGGAGCAGCAGAAGAAGGCCAAGATTCCTCGCCCTCCCAATGCCTACATCTTGTACCGTAAGGACCATCATCGTGAGATCCGCGAGCAGAATCCCGGACTTCACAATAACGAGATTTGTAAGTTTCTTGTCATCATGATCGAAGATCTTTGGCCTTGAGACTAACCTCACTTAGCGGTCATCGTCGGCAACATGTGGCGTGATGAGCAGCCGCACATTCGCGAGAAATATTTCAACATGTCCAATGAGATCAAGACCAGAATGTTGCTGGAACATCCCGACTATCGCTACAATCCGCGTCGGTCTCAAGACATTCGCAGGCGCGTCTCGCCGTATCTCAAGATCAAGCTCCTCAACTATGACGTTAATGGCAACCTTCTTTGGGGAACCGTCAACGCCGAGGATGCTGCGCTGATTCGGACCCACTTCCATGGAGTCGTTCGTGTTGAGGAAATGGATGATGGCTGC
	Neurospora_tetrasperma_RLM131_small_a  ATGGACGGCAACTCGACCCCCCCCGCTCCAAACGTCAAGACTACTTTGGCTTGGTCGCGCATCTCAAACCAACTCGGTCACTGGAATGACCGCAAGGTCATTGCCATTCCTCTGAGCGACTTCCTTTGCACCCACCCTGACATTCAGTCTGGCATCATCGCCGAGTTCAAGTAAGTGTCCTCACCCATTTCTCACCCTACCTTGTACTGACCATTTGCAATAGGAAAGCGACTGGTGAAGAGGGCATGTTTGCTCGCGATCCTGAATCATTGGGAATTATGCTTCTTGGTCCCGTCAAGCTGTTCAAGCCCGACAGTGTCGTCGTCGACGGCAACCTGTTCTGGGATCCCAAGGGCATCCATGCTTCGGCACCCAAGGAGCAGCAGAAGAAGGCCAAGATCCCTCGCCCTCCCAATGCCTACATCTTGTACCGTAAGAACCATCATCGTGAGATCCGCGAGCAGAATCCCGGACTCCACAATAACGAGATTTGTAAGTTTCTTGTCATCATGATCGAAGATCTTTGGCCTTGAGACTAACCTCACTTAGCGGTCATCGTCGGCAACATGTGGCGTGATGAGCAGCCGCACATTCGCGAGAAATATTTCAACATGTCCAATGAGATCAAGACCAGAATGTTGCTGGAACATCCCGACTATCGCTACAATCCGCGTCGGTCTCAAGACATTCGCAGGCGCGTCTCGCCGTATCTCAAGATCAAGCTCCTCAACTATGACGTTAATGGCAACCTTCTTTGGGGAACCGTCAACGCCGAGGATGCTGCGCTGATTCGGACTCACTTCCATGGAGTCGTTCGTGTTGAGGAAATGGATGATGGCTGC

;



END;

BEGIN ASSUMPTIONS;
	TYPESET * UNTITLED   =  unord:  1 -  842;

END;

BEGIN TREES;
	Title '"mat_little_a.tre"';
	LINK Taxa = Taxa;
	TRANSLATE
		1 Neurospora_crassa_8863,
		2 Neurospora_discreta_8579,
		3 Neurospora_hispaniola_8815,
		4 Neurospora_sitophila_412,
		5 Neurospora_tetrasperma_965_small_a,
		6 Neurospora_tetrasperma_P4492_small_a,
		7 Neurospora_tetrasperma_RLM131_small_a;
	TREE tree_1 = (2:0.0357,((5:0.00694,1:0.01105):0.01309,(((3:0.00854,6:0.00402):0.00239,4:0.00834):0.0,7:0.00482):0.00781):0.01805);

END;


BEGIN CODONS;
	CODESET * UNTITLED   =  universal:  1 -  842;


END;

BEGIN MESQUITECHARMODELS;
	ProbModelSet * UNTITLED   =  'Jukes-Cantor':  1 -  842;
END;

Begin MESQUITE;
		MESQUITESCRIPTVERSION 2;
		TITLE AUTO;
		tell ProjectCoordinator;
		timeSaved 1320848242906;
		getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa;
		tell It;
			setID 0 8687143804985928439;
			tell It;
				attachments ;
			endTell;
		endTell;
		getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters;
		tell It;
			setID 0 3420408923241369496;
			mqVersion 275;
			checksumv 0 3 761479719 null  getNumChars 842 numChars 842 getNumTaxa 7 numTaxa 7   short true   bits 15   states 15   sumSquaresStatesOnly 119026.0 sumSquares 119026.0 longCompressibleToShort false usingShortMatrix true   NumFiles 1 NumMatrices 1 errorReportedDuringRun;
			mqVersion;
		endTell;
		getWindow;
		tell It;
			suppress;
			setResourcesState true false 367;
			setPopoutState 400;
			setExplanationSize 0;
			setAnnotationSize 0;
			setFontIncAnnot 0;
			setFontIncExp 0;
			setSize 700 464;
			setLocation 8 22;
			setFont SanSerif;
			setFontSize 10;
			getToolPalette;
			tell It;
			endTell;
			setActive;
			desuppress;
		endTell;
		endTell;
end;