#NEXUS
[written Wed Nov 09 15:50:52 CET 2011 by Mesquite  version 2.75 (build 564) at eb115.ebc.uu.se/130.238.155.115]

BEGIN TAXA;
	TITLE Taxa;
	DIMENSIONS NTAX=10;
	TAXLABELS
		Neurospora_crassa_8858 Neurospora_discreta_8579 Neurospora_hispaniola_8817 Neurospora_sitophila_1135 Neurospora_tetrasperma_965_bigA Neurospora_tetrasperma_965_small_a Neurospora_tetrasperma_P4492_bigA Neurospora_tetrasperma_P4492_small_a Neurospora_tetrasperma_RLM131_bigA Neurospora_tetrasperma_RLM131_small_a 
	;

END;


BEGIN CHARACTERS;
	TITLE  '"tef-1.nex"';
	DIMENSIONS  NCHAR=783;
	FORMAT DATATYPE = DNA GAP = - MISSING = ?;
	MATRIX
	Neurospora_crassa_8858                 CACTTGATCTACAAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTCGAGAAGGTCAGTCACCATCTGCTTAGCTCACCATTCACATCGCCAT-TCCCCTC----TGCTCTGCCATTCTGCTGTCTTTGAGCCTTTCCCCGCCGGTTTGGCTT--TGGCAACCCCTCACCCTCTCATGGTGGGGTTGGGGCTCAAA-GATTTTCGCTTGGCTGCGCACAGACCCACTTACCCCGCGTTCAAAC-AACAC---GCAACCCCAACTCAT--ACACTCCGCATGATGCTGACTATCAATTACAGGAAGCCGCTGAGCTCGGTAAGGGTTCCTTCAAGTATGCCTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGATATCGCCCTCTGGAAGTTCGAGACTCCCAAGTACTACGTCACCGTCATCGGTATGTCGCACCATAGCCCGGCATTCATTCCAACTCATGCTAATTCATTACCTCGACAGATGCCCCCGGTCATCGTGACTTCATCAAGAACATGATCACTGGTACCTCCCAGGCTGATTGCGCTATCCTCATCATTGCCGCCGGTACTGGTGAGTTCGAGGCTGGTATCTCCAAGGATGGCCAGACCCGTGAGCACGCTCTGCTCGCCTACACCCTCGGTGTCAAGCAGCTCATTGTTGCCATCAACAAGATGGACACCACCCAGTGGTCCCAGACTCGTTTCGAGGAGATCATCAAGGAGACCAAGAACTTCATCAAGAAGGTTGGCTACAACCCCGC
	Neurospora_discreta_8579               CACTTGATCTACAAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTCGAGAAGGTTCGTCATCATCTGCTCAGTTCATCATTCGTGTCGCCATCTTCCCTCCCAGCGCTCTGCTGTTCTGATGCCTTTGGGCCTTTCCCCGCTGGCTTGGCTTTGTGGCAGCTCCTCGTCCACCCATGGTGGGGGAGGGGCACACA-GAATTTTGCGTGAC---GCACGGACCCACTTACCCCGCGCTCAATCGAACATCAAGCAACACGAA--CATTGATAAT-GACTTGATGCTGACTATCAATAACAGGAAGCCGCTGAGCTCGGTAAGGGTTCCTTCAAGTATGCCTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGATATCGCCCTCTGGAAGTTCGAGACTCCCAAGTACTACGTCACCGTCATCGGTATGTCGCACCATGGTCTTCCATTTGTATCAAC-CATGCTAATTCATTGCTTCAATAGATGCCCCCGGTCATCGTGATTTCATCAAGAACATGATCACTGGTACCTCCCAGGCTGATTGCGCTATCCTCATCATTGCCGCTGGTACTGGTGAGTTCGAGGCTGGTATCTCCAAGGATGGCCAGACCCGTGAGCACGCTCTGCTCGCCTACACCCTTGGTGTCAAGCAGCTCATTGTTGCCATCAACAAGATGGACACCACCCAGTGGTCCCAGACTCGTTTCGAGGAGATCATCAAGGAGACCAAGAACTTCATCAAGAAGGTTGGCTACAACCCCGC
	Neurospora_hispaniola_8817             CACTTGATCTACAAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTCGAGAAGGTCAGTCACCATCTGCTCAGCTCACCATCCTCATCGCCAT-TTCACTC----TGCTCTGCCATTCTGCTGTCTTTGGGCCTTTCCCCGCTGGTTTGGCTTTGTGGCAACCCCTCACC---TTATGGTGGGGCTGGGG-TCAAA-GATTTTTGCTTGGCTGCGCACAGACCCACTTACCCCGCGTTCGAAC-AACACCAAGCAACTCCGACTCATTTACACTCGACATGATGCTGACTACCAACTACAGGAAGCCGCTGAGCTCGGCAAGGGTTCCTTCAAGTATGCCTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGATATCGCCCTCTGGAAGTTCGAGACTCCCAAGTACTACGTCACCGTCATCGGTATGTCGCACTATAGCCCCGCATTCATTCCAACTCATGCTAATTCATTACCTTAACAGATGCCCCCGGTCATCGTGATTTCATCAAGAACATGATCACTGGTACCTCCCAGGCTGATTGCGCTATTCTCATCATTGCCGCCGGTACTGGTGAGTTCGAGGCTGGTATCTCCAAGGATGGCCAGACCCGTGAGCACGCTCTGCTCGCCTACACCCTCGGTGTCAAGCAGCTTATTGTTGCCATCAACAAGATGGACACCACCCAGTGGTCCCAGACCCGTTTCGAGGAGATCATCAAGGAGACCAAGAACTTCATCAAGAAGGTTGGCTACAACCCCGC
	Neurospora_sitophila_1135              CACTTGATCTACAAGTGCGGTGGTATCGACAAGCGTACCATTGAGAAGTTCGAGAAGGTCAGTCACCGTCTGCTCATCTCATCATTCTCATCGCCAT-TTCGCTC----TGCTCTGCCATTCTGCTGTCTTTGGACCTTTCCCCGCTGGTTTGGCTTTGTGGCAACCCCTCACC---TCGTGGTGGGGTTGGGGCTCAAAGGATTTTCACTTGGCTGTGCACAGACCCACTTACCCCGCGTTCGAAC-AACACCAAGCAACTGCAACTCATTTACACTCGACATGATGCTGACTATCAACTGTAGGAAGCCGCTGAGCTCGGCAAGGGTTCTTTCAAGTATGCCTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGATATCGCCCTCTGGAAGTTCGAGACTCCCAAGTACTACGTCACCGTCATCGGTATGTCGCACTATAGCTTCGTATTCCTTCCAACCCATACTAACATATCACTTCAACAGATGCCCCCGGCCATCGTGATTTCATCAAGAACATGATCACTGGTACCTCCCAGGCTGATTGCGCTATTCTCATCATTGCTGCCGGTACTGGTGAGTTCGAGGCTGGTATCTCCAAGGATGGCCAGACCCGTGAGCACGCTCTGCTCGCCTACACCCTCGGTGTCAAGCAGCTCATTGTTGCCATCAACAAGATGGACACCACCCAGTGGTCCCAGACTCGTTTCGAGGAGATCATCAAGGAGACCAAGAACTTCATCAAGAAGGTTGGCTACAACCCCGC
	Neurospora_tetrasperma_965_bigA        CACTTGATCTACAAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTCGAGAAGGTTAGTCACCATCTGCTCAGCTCACCATCCCCATCGCCAT-CTC---C----TGCTCTGCCATTATGCTGTCTTTGGGCCTTTCCCCGCTGGTTTGGCTTTGTGGCAACCCCTCACCTTCTCATGGTGGGGCTGGGGCTCAAA-GATTTTCACTTGGCTGCGCACAGACCCACTTACCCCGCGTTGAAAC-ATCACCAAGCAACCCCAACTCATCTACACTCGACATGATGCTGACTATCAACTACAGGAAGCCGCTGAGCTCGGCAAGGGTTCCTTCAAGTATGCCTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGATATCGCCCTTTGGAAGTTCGAGACTCCCAAGTACTACGTCACCGTCATCGGTAGGTCGCAC--TAGCCTCGCATTCATTCCAACTCATGCTAAT-CAATACCTCAACAGATGCCCCCGGTCATCGTGATTTCATCAAGAACATGATCACTGGTACCTCCCAGGCTGATTGCGCTATTCTCATCATTGCCGCTGGTACTGGTGAGTTCGAGGCTGGTATCTCCAAGGATGGCCAGACCCGTGAGCACGCTCTGCTCGCCTACACCCTCGGTGTCAAGCAGCTCATCGTTGCCATCAACAAGATGGACACCACCCAGTGGTCCCAGACTCGTTTCGAGGAGATCATCAAGGAGACCAAGAACTTCATCAAGAAGGTTGGCTACAACCCCGC
	Neurospora_tetrasperma_965_small_a     CACTTGATCTACAAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTCGAGAAGGTCAGTCACCATCTGCTTAGCTCACCATTCACATCGCCAT-TCCCCTC----TGCTCTGCCATTCTGCTGTCTTTGAGCCTTTCCCCGCCGGTTTGGCTT--TGGCAACCCCTCACC--CTCATGGTGGGGTTGGGGCTCAAA-GATTTTCGCTTGGCTGCGCACAGACCCACTTACCCCGCGTTCAAAC-AACAC---ACAACCCCAACTCAT--ACACTCCACATGATGCTGACTATCAACCACAGGAAGCCGCTGAGCTCGGTAAGGGTTCCTTCAAGTATGCCTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGATATCGCCCTCTGGAAGTTCGAGACTCCCAAGTACTACGTCACCGTCATCGGTATGTCGCACCATAGCCCGGCATTCATTCCAACTCATGCTAATTCATTACCTCGACAGATGCCCCCGGTCATCGTGATTTCATCAAGAACATGATCACTGGTACCTCCCAGGCTGATTGCGCTATCCTCATCATTGCCGCCGGTACTGGTGAGTTCGAGGCTGGTATCTCCAAGGATGGCCAGACCCGTGAGCACGCTCTGCTCGCCTACACCCTCGGTGTCAAGCAGCTCATTGTTGCCATCAACAAGATGGACACCACCCAGTGGTCCCAGACTCGTTTCGAGGAGATCATCAAGGAGACCAAGAACTTCATCAAGAAGGTTGGCTACAACCCCGC
	Neurospora_tetrasperma_P4492_bigA      CACTTGATCTACAAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTCGAGAAGGTCAGTCACCATCTGCTCAGCTCACCATCCCCATCGCCAT-CTCCTTC----TGCTCTGCCATTATGCTGTCTTTGGGCCTTTCCCCGCTGGTTTGGCTTTGTGGCAACCCCTCACCTTCTCATGGTGGGGCTGGGGCTCAAA-GATTTTCGCTTGGCTGCGCACAGACCCACTTACCCCGCGTTAAAAC-ATCACCAAGCAGCCCCAACTCATCTACACTCGACATGATGCTGACTATCAACTACAGGAAGCCGCTGAGCTCGGCAAGGGTTCCTTCAAGTATGCCTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGATATCGCCCTCTGGAAGTTCGAGACTCCCAAGTACTACGTCACCGTCATCGGTAGGTCGCAC--TAGCCTCGCATTCATTCCAACTCATGCTAAT-CAATACCTCAACAGATGCCCCCGGTCATCGTGATTTCATCAAGAACATGATCACTGGTACCTCCCAGGCTGATTGCGCTATTCTCATCATTGCCGCTGGTACTGGTGAGTTCGAGGCTGGTATCTCCAAGGATGGCCAGACCCGTGAGCACGCTCTGCTCGCCTACACCCTCGGTGTCAAGCAGCTCATCGTTGCCATCAACAAGATGGACACCACCCAGTGGTCCCAGACTCGTTTCGAGGAGATCATCAAGGAGACCAAGAACTTCATCAAGAAGGTTGGCTACAACCCCGC
	Neurospora_tetrasperma_P4492_small_a   CACTTGATCTACAAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTCGAGAAGGTCAGTCACCATCTGCTCAGCTCACCATCCCCATCGCCAT-CTC---C----TGCTCTGCCATTATGCTGTCTTTGGGCCTTTCCCCGCTGGTTTGGCTTTGTGGCAATCCCTCACCTTCTCATGGTGGGGCTGGGGCTCAAA-GATTTTCGCTTGGCTGCGCACAGACCCACTTACCCCGCGTTGAAAC-ATCACCAAGCAACCCCAACTCATCTACACTCGACATGATGCTGACTATCAACTACAGGAAGCCGCTGAGCTCGGCAAGGGTTCCTTCAAGTATGCCTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGATATCGCCCTCTGGAAGTTCGAGACTCCCAAGTACTACGTCACCGTCATCGGTAGGTCGCAC--TAGCCTCGCATTCATTCCAACTCATGCTAAT-CAATACCTCAACAGATGCCCCCGGTCATCGTGATTTCATCAAGAACATGATCACTGGTACCTCCCAGGCTGATTGCGCTATTCTCATCATTGCCGCTGGTACTGGTGAGTTCGAGGCTGGTATCTCCAAGGATGGCCAGACCCGTGAGCACGCTCTGCTCGCCTACACCCTCGGTGTCAAGCAGCTCATCGTTGCCATCAACAAGATGGACACCACCCAGTGGTCCCAGACTCGTTTCGAGGAGATCATCAAGGAGACCAAGAACTTCATCAAGAAGGTTGGCTACAACCCCGC
	Neurospora_tetrasperma_RLM131_bigA     CACTTGATCTACAAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTCGAGAAGGTCAGTCACCATCTGCTCAGCTCACCATCCTCATCGCCAT-TTCACTC----TGCTCTGCCATTCTGCTGTCTTTGGGCCTTTCCCCGCTGGTTTGGCTTTGTGGCAACCCCTCACC---TTATGGTGGGGTTGGGG-TCAAA-GATTTTCGCTTGGCTGCGCACAGACCCACTTACCCCGCGTTCGAAC-AACACCAAGCAACTCCGACTCATTTACACTCGACATGATGCTGACTACCAACTACAGGAAGCCGCTGAGCTCGGCAAGGGTTCCTTCAAGTATGCCTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGATATCGCCCTCTGGAAGTTCGAGACTCCCAAGTACTACGTCACCGTCATCGGTATGTCGCACTATAGCCCCGCATTCATTCCAACTCATGCTAATTCATTACCTTAACAGATGCCCCCGGTCATCGTGATTTCATCAAGAACATGATCACTGGTACCTCCCAGGCTGATTGCGCTATTCTCATCATTGCCGCCGGTACCGGTGAGTTCGAGGCTGGTATCTCCAAGGATGGCCAGACCCGTGAGCACGCTCTGCTCGCCTACACCCTCGGTGTCAAGCAGCTCATTGTTGCCATCAACAAGATGGACACCACCCAGTGGTCCCAGACCCGTTTCGAGGAGATCATCAAGGAGACCAAGAACTTCATCAAGAAGGTTGGCTACAACCCCGC
	Neurospora_tetrasperma_RLM131_small_a  CACTTGATCTACAAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTCGAGAAGGTCAGTCACCATCTGCTCAGCTTACCATTCCCATCGCCAT-ATCCCTC----TGCTCTGTCATTCTGCTGTCTTGGGGCCTTTCGCCGCTGGGTTGGCTTTGTGGCAACCCCTCACCCTCTCATGGTGGGGTTGGGGCTCAAA-GATTTTCGCTTGGCTGCGCACAGACCCACTTACCCCGCGTTGAAAC-ACCACCAAGCAACCCCAACTCATCTACACTCGACATGATGCTGACTATCAACTACAGGAAGCCGCTGAGCTCGGCAAGGGTTCCTTCAAGTATGCCTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGATATCGCCCTCTGGAAGTTCGAGACTCCCAAGTACTACGTCACCGTCATCGGTATGTCGCACTATAGGCTCGCATTCATTTCAACTCATGCTAATGCATTACTTCAACAGATGCCCCCGGTCATCGTGATTTCATCAAGAACATGATCACTGGTACCTCCCAGGCTGATTGCGCTATTCTCATCATTGCCGCCGGTACTGGTGAGTTCGAGGCTGGTATCTCCAAGGATGGCCAGACCCGTGAGCACGCTCTGCTCGCCTACACCCTCGGTGTCAAGCAGCTCATTGTTGCCATCAACAAGATGGACACCACCCAGTGGTCCCAGACTCGTTTCGAGGAGATCATCAAGGAGACCAAGAACTTCATCAAGAAGGTTGGCTACAACCCCGC

;



END;

BEGIN ASSUMPTIONS;
	TYPESET * UNTITLED   =  unord:  1 -  783;

END;

BEGIN TREES;
	Title '"tef1.tre"';
	LINK Taxa = Taxa;
	TRANSLATE
		1 Neurospora_crassa_8858,
		2 Neurospora_discreta_8579,
		3 Neurospora_hispaniola_8817,
		4 Neurospora_sitophila_1135,
		5 Neurospora_tetrasperma_965_bigA,
		6 Neurospora_tetrasperma_965_small_a,
		7 Neurospora_tetrasperma_P4492_bigA,
		8 Neurospora_tetrasperma_P4492_small_a,
		9 Neurospora_tetrasperma_RLM131_bigA,
		10 Neurospora_tetrasperma_RLM131_small_a;
	TREE tree_1 = (2:0.06355,((6:0.00418,1:0.00538):0.01619,(((3:0.00542,9:0.00267):0.01196,4:0.03898):0.00577,(10:0.01627,(5:0.00544,(7:0.00433,8:0.00267):0.0):0.01565):0.00713):0.00544):0.03327);

END;


BEGIN CODONS;
	CODESET * UNTITLED   =  universal:  1 -  783;


END;

BEGIN MESQUITECHARMODELS;
	ProbModelSet * UNTITLED   =  'Jukes-Cantor':  1 -  783;
END;

Begin MESQUITE;
		MESQUITESCRIPTVERSION 2;
		TITLE AUTO;
		tell ProjectCoordinator;
		timeSaved 1320850252547;
		getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa;
		tell It;
			setID 0 4639327595092712991;
			tell It;
				attachments ;
			endTell;
		endTell;
		getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters;
		tell It;
			setID 0 3280377686478138780;
			mqVersion 275;
			checksumv 0 3 3717610822 null  getNumChars 783 numChars 783 getNumTaxa 10 numTaxa 10   short true   bits 15   states 15   sumSquaresStatesOnly 158213.0 sumSquares 158213.0 longCompressibleToShort false usingShortMatrix true   NumFiles 1 NumMatrices 1 errorReportedDuringRun;
			mqVersion;
		endTell;
		getWindow;
		tell It;
			suppress;
			setResourcesState true false 367;
			setPopoutState 400;
			setExplanationSize 0;
			setAnnotationSize 0;
			setFontIncAnnot 0;
			setFontIncExp 0;
			setSize 700 464;
			setLocation 8 22;
			setFont SanSerif;
			setFontSize 10;
			getToolPalette;
			tell It;
			endTell;
			setActive;
			desuppress;
		endTell;
		endTell;
end;