#NEXUS [written Tue Mar 20 09:41:27 ICT 2012 by Mesquite version 2.75 (build 566) at taksonomi/192.168.2.100] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=15; TAXLABELS Erysiphe_trina_ex_Quercus_AB022351 Erysiphe_asiatica_MUMH4989_AB622217 Erysiphe_asiatica_MUMH4992_AB622218 Erysiphe_gracilis_ex_Quercus_glauca_AB022358 Erysiphe_javanicus_MUMH5147 Erysiphe_javanicus_MUMH5153 Erysiphe_monoperidiata_MUMH4985_AB622211 Erysiphe_monoperidiata_MUMH4986_AB62212 Erysiphe_monoperidiata_MUMH4987_AB62213 Erysiphe_monoperidiata_MUMH4988_AB622214 Erysiphe_monoperidiata_MUMH4990_AB622215 Erysiphe_monoperidiata_MUMH4991_AB622216 Erysiphe_japonica_ex_Quercus_AB022416 Erysiphe_necator_ex_Vitis_DQ444327 Erysiphe_necator_ex_Vitis_DQ189089 ; END; BEGIN CHARACTERS; TITLE 'Matrix in file "1DEC2011_Ejavanicus.nexus"'; DIMENSIONS NCHAR=1277; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Erysiphe_trina_ex_Quercus_AB022351 CAGAGCGTGAGGTCCAGCCCTGGCAATTGTCGTGCGCTGGA--TCGACCCT-CCACCCGTGTCGATTCGTCTTTTTGTTGCTTTGGCGGGCCCG------------------------------------------GCCC-ACCGGCTGCGGCTGGAGCGCGTCCGCCAGAGACCTTTTACATCCAAACTCA-TGTTGTGTCCCCTGTAGTCTAAGG--------------------AAAACTTTCAACAACGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATCTAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATAACGCCCCCCCTCAAGCTACCAGTTT-TGTGTGGCTGCGGTGTTGGGGCTCGCCGA-ATCT--CGGCGGCCCTTAAATGCAGTGGCGGTGCTGACGTCGGCTTTACGCGCAGTAC--AATAGCTCGCGACAGAGTGGCGACAGCGACTAGCCAGTAAC-GGCGAGTGAAGCGGTGACAGCTCAAATTTGAAATCTGGCTCCGTCGGAGTCCGAGTTGTAATTTGTAGAAGATGCTTTGGGTTGCAGAATCGGCCTAAGTTCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTATGCGGCCGAGG-TTTGCGCCCGTGTAAAGCTCTTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATGGCC---AGACCGATAGCGAACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCTACCAGACTTGGGCGCTGCCGATCATCCCGAGTTCTCTCTGGTGCACTCGACAGCGTACAGGCCAGCATCGGTTCGGGTGGCTGGAGAAAGACC-GGAGGAACGTAGCTCCCCTTCG-GGGCAGTG--TTATAGCCTCTGGTGCCATGCAGCCCAGCCGGACCGAGGACCGCGCCTTCGGGTTAGGATGCTGGCGTAATGGTTGTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTTACATCAATGCGAGTGTTTGGGCGTGAAACCCATACGCGGAATGAAAGTGAACGTAGGTGAGAACCCTTTGTAAAGGGGGTGCATCATCGACCGATCCTGATGT-TTCGGATGGATTTGAGTAAGAGCATAGCTG-TTGGG Erysiphe_asiatica_MUMH4989_AB622217 -------------TCAGCCATGGCAGTTGTCGTGCGCTGGATCTCGACCCTCCCACCCGTGTTGACTTGTATTTTTGTTGCTTTGGCGGATCGG------------------------------------------GCCCAACCGGCTTCGGCTGGGGCGCGTCCGCCAGAGACCTTT-ACATCCAAACTCATTGTGGA---CCCTGTAGTCTAAGA--------------------AAAACTTTCAACAACGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATCTAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATAACA-ACCCCTTCGAGCTACCATTT--TGTGTGGCTACGGTGTTGGGGCTCGCCGA---AT--CGGCGACCCTTAAAGACAGTGGCGGTACCGATGTCGGCTTTACGCGTAGTAA---ATAGCTCGCGACAGAGCGGCGACGGCGACTAGCCAGTAAC-GGCGAGTGAAGCGGTAACAGCTCAAATTTGAAATCTGGCTCCGTCGGAGTCCGAGTTGTAATTTGTAGAAGATGCTTTGGGTTGTGGGTTCGGCCTAAGTTCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTATGTGGCCGAGGCCCTGCGCCCGTGTAAAGCTCTTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATGGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTTGGGCGCTGCTGATCATCCAGAGTTCTCTCTGGTGCACTCGACAGCGCACAGGCCAGCATCGGTTCGGGTGGCTGGACAAAGACCGGGAGGAACGTAGCTCCCTTTCGCGGGGAGTG--TTATAGCCTCTGGTGTCATACAGCCCAACTGGACCGAGGACCGCGCCTTCGGGCTAGGATGCTGGCGTAATGGTTGTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGCGTTAAACCCATACGCGGAATGAAAGTGAACGTAGGTGAGAACCCTTT------GGGGTGCATCATCGACCGATCCTGATGTCTTCGGACGGATTTGAGTAAGAGCATAGCTGTTTGGG Erysiphe_asiatica_MUMH4992_AB622218 -------------TCAGCCATGGCAGTTGTCGTGCGCTGGATCTCGACCCTCCCACCCGTGTTGACTTGTATTTTTGTTGCTTTGGCGGATCGG------------------------------------------GCCCAACCGGCTTCGGCTGGGGCGCGTCCGCCAGAGACCTTT-ACATCCAAACTCATTGTGGA---CCCTGTAGTCTAAGA--------------------AAAACTTTCAACAACGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATCTAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATAACA-ACCCCTTCGAGCTACCATTT--TGTGTGGCTACGGTGTTGGGGCTCGCCGA---AT--CGGCGACCCTTAAAGACAGTGGCGGTACCGATGTCGGCTTTACGCGTAGTAA---ATAGCTCGCGACAGAGCGGCGACGGCGACTAGCCAGTAAC-GGCGAGTGAAGCGGTAACAGCTCAAATTTGAAATCTGGCTCCGTCGGAGTCCGAGTTGTAATTTGTAGAAGATGCTTTGGGTTGTGGGTTCGGCCTAAGTTCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTATGTGGCCGAGGCCCTGCGCCCGTGTAAAGCTCTTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATGGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTTGGGCGCTGCTGATCATCCAGAGTTCTCTCTGGTGCACTCGACAGCGCACAGGCCAGCATCGGTTCGGGTGGCTGGACAAAGACCGGGAGGAACGTAGCTCCCTTTCGCGGGGAGTG--TTATAGCCTCTGGTGTCATACAGCCCAACTGGACCGAGGACCGCGCCTTCGGGCTAGGATGCTGGCGTAATGGTTGTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGCGTTAAACCCATACGCGGAATGAAAGTGAACGTAGGTGAGAACCCTTT------GGGGTGCATCATCGACCGATCCTGATGTCTTCGGACGGATTTGAGTAAGAGCATAGCTGTTTGGG Erysiphe_gracilis_ex_Quercus_glauca_AB022358 CAGAGCGTGAGGTCCAGCCATAGCAGTTGCCGTGTGCTGGA--TCGACCCT-CCACCCGTGTCGACTTATATTTTTGTTGCTTTGGCGGGCCGG------------------------------------------GCCC-ACCGGCTTCGGCTGGGGCGCGTCCGCCAGAGACCCT--ACATCCAAACTCA-TGTTGT---CCTTGTAGTCTAAGG--------------------AAAACTTTCAACAACGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATCTAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATAACA-ACCCCCTCGAGCTACCATTT--TGTGTGGCTGCGGTGTTGGGGCTCGCCGA---ATC-CGGTGGCCCTTAAAGGTAGTGGCGGTGCCGACGTCAGCTTTACGCGTAGTAA---ATAGCTCGCGACAGAGCGGCGACAGCGACTAGCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Erysiphe_javanicus_MUMH5147 ------------------------------------------------CCT-CCACCCGTGTCGACTTGTATTTTTGTTGCTTTGGCGGACCGGGCTCGC-CCATGGTCGCGTTTCGTGCGTGAGCATGGCGTGCTGCCC-ACCGGCTTCGGCTGGGGCGCGTCCGCCAGAGACCTTT-ACATCCAAACTCATTGTTGT--CCCCTGTAGTCTAAGGTTTAGATTGAAGAATTGATAAAAACTTTCAACAACGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATCTAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGATGGGCATGCCTGTTCGAGCGTCATAACA-ACCCCTTCGAGCTACCATTT--TGTGTGGCTACGGTGTTGGGGCTCGCCGA---GT--CGGCGGCCCTTAAAGGCAGTGGCGGTACCGATGTCGGCTTTACGCGTAGTAA---ATAGCTCGCGACAGAGCGGCGACGGCGACTAGCCAGTAAC-GGCGAGTGAAGCGGTAACAGCTCAAATTTGAAATCTGGCTCCCTCGGAGTCCGAGTTGTAATTTGTAGAAGATGCTTTGGGTTGTGGGTTTGGCCTAAGTTCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTATGTGGCCGAGGCCCTGCGCCCGTGTAAAGCTCTTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATGGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTTGGGCGCTGCTGATCATCCAGAGTTCTCTCTGGTGCACTCGACAGCGTACAGGCCAGCATGGGTTCGGGTGGCTGGACAAAGACC-GGAGGAACGTAGCTCCCTTTCGCGGGGAGTG--TTATAGCCTCTGGTGCCATACAGCCCAACCGGACCGAGGACCGCGCCTTCGGGCTAGGATGCTGGCGTAATGGTTGTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGCGTTAAACCCATACGCGGAATGAAAGTGAACGTAGGTGAGAACCCTTT------GGGGTGCATCATCGACCGATCCTGATGTCTTCGGACGGATTTGAGTAAGAGCATAGCTG-TTGGG Erysiphe_javanicus_MUMH5153 -------------TCTAGCCTGGCAGTTGTCGTGCGCTGGATCTCGACCCT-CCACCCGTGTCGACTTGTATTTTTGTTGCTTTGGCGGACCGGGCTCGC-CCATGGTCGCGTTTCGTGCGTGAGCATGGCGTGCTGCCC-ACCGGCTTCGGCTGGGGCGCGTCCGCCAGAGACCTTT-ACATCCAAACTCATTGTTGT--CCCCTGTAGTCTAAGGTTTAGATTGAAGAATTGATAAAAACTTTCAACAACGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATCTAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGATGGGCATGCCTGTTCGAGCGTCATAACA-ACCCCTTCGAGCTACCATTT--TGTGTGGCTACGGTGTTGGGGCTCGCCGA---GT--CGGCGGCCCTTAAAGGCAGTGGCGGTACCGATGTCGGCTTTACGCGTAGTAA---ATAGCTCGCGACAGAGCGGCGACGGCGACTAGCCAGTAAC-GGCGAGTGAAGCGGTAACAGCTCAAATTTGAAATCTGGCTCCCTCGGAGTCCGAGTTGTAATTTGTAGAAGATGCTTTGGGTTGTGGGTTTGGCCTAAGTTCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTATGTGGCCGAGGCCCTGCGCCCGTGTAAAGCTCTTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATGGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTTGGGCGCTGCTGATCATCCAGAGTTCTCTCTGGTGCACTCGACAGCGTACAGGCCAGCATGGGTTCGGGTGGCTGGACAAAGACC-GGAGGAACGTAGCTCCCTTTCGCGGGGAGTG--TTATAGCCTCTGGTGCCATACAGCCCAACCGGACCGAGGACCGCGCCTTCGGGCTAGGATGCTGGCGTAATGGTTGTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGCGTTAAACCCATACGCGGAATGAAAGTGAACGTAGGTGAGAACCCTTT------GGGGTGCATCATCGACCGATCCTGATGTCTTCGGACGGATTTGAGTAAGAGCATAGCTG-TTGGG Erysiphe_monoperidiata_MUMH4985_AB622211 -------------TCTAGCCTGGCAGTTGTCGTGCGCTGGATCTCGACCCT-CCACCCGTGTCGACTTGTATTTTCGTTGCTTTGGCGGACCGG------------------------------------------GCCC-ACCGGCTTCGGCTGGGGCGCGTCCGCCAGAGACCTTT-ACATCCAAACTCATTGTTGT--CCCCTGTAGTCTAAGG--------------------AAAACTTTCAACAACGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATCTAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATAACA-ACCCCTTCGAGCTACCATTT--TGTGTGGCTACGGTGTTGGGGCTCGCCGA---GT--CGGCGGCCCTTAAAGGCAGTGGCGGTACCGATGTCGGCTTTACGCGTAGTAA---ATAGCTCGCGACAGAGCGGCGACGGCGACTAGCCAGTAACGGGCGAGTGAAGCGGTAACAGCTCAAATTTGAAATCTGGCTCCGTCGGAGTCCGAGTTGTAATTTGTAGAAGATGCTTTGGGTTGTGGGTTTGGCCTAAGTTCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTATGTGGCCGAGGCCCTGCGCCCGGGTAAAGCTCTTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATGGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTTGGGCGCTGCTGATCATCCAGAGTTCTCTCTGGTGCACTCGACAGCGCACAGGCCAGCATCGGTTCGGGTGGTTGGACAAAGACC-GGAGGAACGTAGCTCCCTTTCGCGGGGAGTG--TTATAGCCTCTGGTGCCATACAGCCCAACCGGACCGAGGACCGCGCCTTCGGGCTAGGATGCTGGCGTAATGGTTGTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGCGTTAAACCCATACGCGGAATGAAAGTGAACGTAGGTGAGAACCCTTT------GGGGTGCATCATCGACCGATCCTGATGTCTTCGGACGGATTTGAGTAAGAGCATAGCTG------ Erysiphe_monoperidiata_MUMH4986_AB62212 -------------TCTAGCCTGACAGTGGTCGTGCGCTGGATCTCGACCCT-CCACCCGTGTCGACTTGTATTTTCGTTGCTTTGGCGGACCGG------------------------------------------GCCC-ACCGGCTTCGGCTGGGGCGCGTCCGCCAGAGACCTTT-ACATCCAAACTCATTGTTAT--CCCCTGTAGTCTAAGG--------------------AAAACTTTCAACAACGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATCTAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATAACA-ACCCCTTCGAGCTACCATTTTGTGTGTGGCTACGGTGTTGGGGCTCGCCGAGGCGG--CGGCGGCCCTTAAAGGCAGTGGCAGTACCGATGTCGGCTTTACGCGTAGTAA---ATAGCTCGCGACAGAGCGGCGACGGCGACTAGCCAGTAAC-GGCGAGTGAAGCGGTAACAGCTCAAATTTGAAATCTGGCTCCGTCGGAGTCCGAGTTGTAATTTGTAGAAGATGCTTTGGGTTGTGGGCTTGGCCTAAGTTCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTATGTGGCCGAGGCCCTGCGCCCGGGTAAAGCTCTTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATGGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTTGGGCGCTGCTGATCATCCAGAGTTCTCTCTGGTGCACTCGACAGCGCACAGGCCAGCATCGGTTCGGGTGGCTGGACAAAGACC-GGAGGAACGTAGCTCCCTTTCGCGGGGAGTG--TTATAGCCTCTGGTGCCATACAGCCCAACCGGACCGAGGACCGCGCCTTCGGGCTAGGATGCTGGCGTAATGGTTGTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGCGTTAAACCCATACGCGGAATGAAAGTGAACGTAGGTGAGAACCCTTT------GGGGTGCATCATCGACCGATCCTGATGTCTTCGGACGGATTTGAGTAAGAGCATAGCTG-TTGGG Erysiphe_monoperidiata_MUMH4987_AB62213 -------------TCTAGCCTGGCAGTTGTCGTGCGCTGGATCTCGACCCT-CCACCCGTGTCGACTTGTATTTTCGTTGCTTTGGCGGACCGG------------------------------------------GCCC-ACCGGCTTCGGCTGGGGCGCGTCCGCCAGAGACCTTT-ACATCCAAACTCATTGTTGT--CCCCTGTAGTCTAAGG--------------------AAAACTTTCAACAACGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATCTAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATAACA-ACCCCTTCGAGCTACCATTT--TGTGTGGCTACGGTGTTGGGGCTCGCCGA---GT--CGGCGGCCCTTAAAGGCAGTGGCGGTACCGATGTCGGCTTTACGCGTAGTAA---ATAGCTCGCGACAGAGCGGCGACGGCGACTAGCCAGTAAC-GGCGAGTGAAGCGGTAACCGCTCAAATTTGAAATCTGGCTCCGTCGGAGTCCGAGTTGTAATTTGTAGAAGATGCTTTGGGTTGTGGGTTTGGCCTAAGTTCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTATGTGGCCGAGGCCCTGCGCCCGTGTAAAGCTCTTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATGGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTTGGGCGCTGCTGATCATCCAGAGTTCTCTCTGGTGCACTCGACAGCGCACAGGCCAGCATCGGTTCGGGTGGCTGGACAAAGACC-GGAGGAACGTAGCTCCCTTTCGCGGGGAGTG--TTATAGCCTCTGGTGCCATACAGCCCAACCGGACCGAGGACCGCGCCTTCGGGCTAGGATGCTGGCGTAATGGTTGTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGCGTTAAACCCATACGCGGAATGAAAGTGAACGTAGGTGAGAACCCTTT------GGGGTGCATCATCGACCGATCCTGATGTCTTCGGACGGATTTGAGTAAGAGCATAGCTG-TTGGG Erysiphe_monoperidiata_MUMH4988_AB622214 -------------TCTAGCCTGGCAGTTGTCGTGCGCTGGATCTCGACCCT-CCACCCGTGTCGACTTGTATTTTCGTTGCTTTGGCGGACCGG------------------------------------------GCCC-ACCGGCTTCGGCTGGGGCGCGTCCGCCAGAGACCTTT-ACATCCAAACTCATTGTTGT--CCCCTGTAGTCTAAGG--------------------AAAACTTTCAACAACGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATCTAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATAACA-ACCCCTTCGAGCTACCATTT--TGTGTGGCTACGGTGTTGGGGCTCGCCGA---GT--CGGCGGCCCTTAAAGGCAGTGGCGGTACCGATGTCGGCTTTACGCGTAGTAA---ATAGCTCGCGACAGAGCGGCGACGGCGACTAGCCAGTAAC-GGCGAGTGAAGCGGTAACAGCTCAAATTTGAAATCTGGCTCCGTCGGAGTCCGAGTTGTAATTTGTAGAAGATGCTTTGGGTTGTGGGTTTGGCCTAAGTTCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTATGTGGCCGAGGCCCTGCGCCCGTGTAAAGCTCTTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATGGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAGCGTTTGCAACCAGACTTGGGCGCTGCTGATCATCCAGAGTTCTCTCTGGTGCACTCGACAGCGCACAGGCCAGCATCGGTTCGGGTGGTTGGACAAAGACC-GGAGGAACGTAGCTCCCTTTCGTGGGGAGTG--TTATAGCCTCTGGTGCCATACAGCCCAACCGGACCGAGGACCGCGCCTTCGGGCTAGGATGCTGGCGTAATGGTTGTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGCGTTAAACCCATACGCGGAATGAAAGTGAACGTAGGTGAGAACCCTTT------GGGGTGCATCATCGACCGATCCTGATGTCTTCGGACGGATTTGAGTAAGAGCATAGCTG-TTGGG Erysiphe_monoperidiata_MUMH4990_AB622215 --------------CTAGCCTGGCAGTTGTCGTGCGCTGGATCTCGACCCT-CCACCCGTGTCGACTTGTATTTTCGTTGCTTTGGCGGACCGG------------------------------------------GCCC-ACCGGCTTCGGCTGGGGCGCGTCCGCCAGAGACCTTT-ACATCCAAACTCATTGTTGT--CCCCTGTAGTCTAAGG--------------------AAAACTTTCAACAACGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATCTAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATAACA-ACCCCTTCGAGCTACCATTT--TGTGTGGCTACGGTGTTGGGGCTCGCCGA---GT--CGGCGGCCCTTAAAGGCAGTGGCGGTACCGATGTCGGCTTTACGCGTAGTAA---ATAGCTCGCGACAGAGCGGCGACGGCGACTAGCCAGTAAC-GGCGAGTGAAGCGGTAACAGCTCAAATTTGAAATCTGGCTCCGTCGGAGTCCGAGTTGTAATTTGTAGAAGATGCTTTGGGTTGTGGGTTTGGCCTAAGTTCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTATGTGGCCGAGGCCCTGCGCCCGTGTAAAGCTCTTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATGGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTTGGGCGCTGCTGATCATCCAGAGTTCTCTCTGGGGCACTCGACAGCGCACAGGCCAGCATCGGTTCGGGTGGCTGGACAAAGACC-GGAGGAACGTAGCTCCCTTTCGTGGGGAGTG--TTATAGCCTCTGGTGCCATACAGCCCAACCGGACCGAGGACCGCGCCTTCGGGCTAGGATGCTGGCGTAATGGTTGTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGCGTTAAACCCATACGCGGAATGAAAGTGAACGTAGGTGAGAACCCTTT------GGGGTGCATCATCGACCGATCCTGATGTCTTCGGACGGATTTGAGTAAGAGCATAGCTG-TTGGG Erysiphe_monoperidiata_MUMH4991_AB622216 --------------CTAGCCTGGCAGTTGTCGTGCGCTGGATCTCGACCCT-CCACCCGTGTCGACTTGTATTTTCGTTGCTTTGGCGGACCGG------------------------------------------GCCC-ACCGGCTTCGGCTGGGGCGCGTCCGCCAGAGACCTTT-ACATCCAAACTCATTGTTGT--CCCCTGTAGTCTAAGG--------------------AAAACTTTCAACAACGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATCTAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATAACA-ACCCCTTCGAGCTACCATTT--TGTGTGGCTACGGTGTTGGGGCTCGCCGA---GT--CGGCGGCCCTTAAAGGCAGTGGCGGTACCGATGTCGGCTTTACGCGTAGTAA---ATAGCTCGCGACAGAGCGGCGACGGCGACTAGCCAGTAACGGGCGAGTGAAGCGGTAACAGCTCAAATTTGAAATCTGGCTCCGTCGGAGTCCGAGTTGTAATTTGTAGAAGATGCTTTGGGTTGTGGGTTTGGCCTAAGTTCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTATGTGGCCGAGGCCCTGCGCCCGTGTAAAGCTCTTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATGGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTTGGGCGCTGCTGATCATCCAGAGTTCTCTCTGGGGCACTCGACAGCGCACAGGCCAGCATCGGTTCGGGTGGCTGGACAAAGACC-GGAGGAACGTAGCTCCCTTTCGTGGGGAGTG--TTATAGCCTCTGGTGCCATACAGCCCAACCGGACCGAGGACCGCGCCTTCGGGCTAGGATGCTGGCGTAATGGTTGTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGCGTTAAACCCATACGCGGAATGAAAGTGAACGTAGGTGAGAACCCTTT------GGGGTGCATCATCGACCGATCCTGATGTCTTCGGACGGATTTGAGTAAGAGCATAGCTGTTTGGG Erysiphe_japonica_ex_Quercus_AB022416 CAGAGCGAGAGGTCCAGCCATGGCAGTTGTCGTGCGCTGGATCTCGACCCT-CCACCCGTGTCGACTTGTATTTTTGTTGCTTTGGCGGGCCGG------------------------------------------GTCC-ACCGGCTTAGGCTGGAGCGCGTCCGCCAGAGACCTTTAACACCCAAACTCA-TGTTGTCCCCCCTGTTGTCTAAGG--------------------AAAACTTTCAACAACGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATCTAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATAACA-ACCCCCTCGAGCTACCATTTT-TGTGTGGCTACGGTATTGGGGCTCGCTGA-ATCT--CGGCGGCCCTTAAAGGCAGTGGCGGGGCTAACGTCGGCTCTACGCGTAGTAATAGATAGCTCGCGACAGAGCGGCGACAGCGACTAGCCAGTAAC-GGCGAGTGAAGCGGTAACAGCTCAAATTTGAAATCTGGCTCCGTCGGAGTCCGAGTTGTAATTTGTAGAAGATGCTTTGGGTTGTGGGTTCGGCCTAAGTTCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTATGTGGCCGAGG-CTTGCGCCCGTGTAAAGCTCTTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATGGGCCAGAGACCGATAGCGAACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCACCCAGACTTGGGCGCTGCTGATCATCCAGAGTTCTCTCTGGTGCACTCGACAGCGCGCAGGCCAGCATCGGTTCGGGTGGCTGGAGAAAGACC-AGAGGAACGTAGCTACCTTTCG-GGGGAGTGTTTTATAGCCTCTGGTGCCATACAGCCCAGCCGGACCGAGGACCGCGCCTTCGGGCTAGGATGCTGGCGTAATGGGTGTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGCGTTAAACCCATACGCGGAATGAAAGTGAACGTAGGTGAGAACCCTTT------GGGGTGCATCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTG-TTGGG Erysiphe_necator_ex_Vitis_DQ444327 -------------------ATGACGGTAGTCGTGTGCTGGG--TCGACCCTCCCACCCGTGTCGATATGTATTTT-GTTGCTTTGGCGGGCCGGGTTTGCGCCCCGTTCGGCGTCCGCTGTGGCGCTGGGGGAGCCGCCC-ACCGGCTTCGGCTGGAGCGTGCCCGCCAGAGACCT----CATCCAAACTCA-CGTTGT----CATGTAGTCTAAGCTTTA---TTAAGTAATTGATAAAACTTTCAACAACGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTTAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGCATTCCGAGGGGCATGCCTGTTCGAGCGTCATAACA-CCCCCCTCAAGCTGCCCTTG--TG-GTGGCTTCGGTGTTGGGGCTCGTCGCAGTTTTGCGGTGGCCCTTAAAGACAGTGGCGGTCCCCGCGTGGGCTCTACGCGTAGTAACTTGTTCCTCGCGACAGAGTGACGCTCGTGATCAGCCAG--------------------AACCACCCACCTTTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCGGTCATCCGGATTG-----------------------ACAGGTTGACCTCGAATCAGGTAG------GAATACC------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCTGAACTT------------------------------------------------------------------------------------------------------------- Erysiphe_necator_ex_Vitis_DQ189089 CAGAGCGAGAGGCTCAGCCATGACGGTAGTCGTGTGCTGGG--TCGACCCTCCCACCCGTGTCGATATGTATTTT-GTTGCTTTGGCGGGCCGGGTTTGCGCCCCGTTCGGCGTCCGCTGTGGCGCTGGGGGAGCCGCCC-ACCGGCTTCGGCTGGAGCGTGCCCGCCAGAGACCT----CATCCAAACTCA-CGTTGT----CATGTAGTCTAAGCTTTA---TTAAGTAATTGATAAAACTTTCAACAACGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTTAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGCATTCCGAGGGGCATGCCTGTTCGAGCGTCATAACA-CCCCCCTCAAGCTGCCCTTG--TG-GTGGCTTCGGTGTTGGGGCTCGTCGCAGTTTTGCGGTGGCCCTTAAAGACAGTGGCGGTCCCCGCGTGGGCTCTACGCGTAGTAACTTGTTCCTCGCGACAGAGTGACGCTCGTGATCAGCCAG--------------------AACCACCCACCTTTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCGGTCATCCGGATTG-----------------------ACAGGTTGACCTCGAATCAGGTAG------GAATACC------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCTGAACTT------------------------------------------------------------------------------------------------------------- ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 1277; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 1277; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 1277; END; BEGIN TREES; Title 'Trees from "Best1.tre"'; LINK Taxa = Taxa; TRANSLATE 1 Erysiphe_trina_ex_Quercus_AB022351, 2 Erysiphe_asiatica_MUMH4989_AB622217, 3 Erysiphe_asiatica_MUMH4992_AB622218, 4 Erysiphe_gracilis_ex_Quercus_glauca_AB022358, 5 Erysiphe_javanicus_MUMH5147, 6 Erysiphe_javanicus_MUMH5153, 7 Erysiphe_monoperidiata_MUMH4985_AB622211, 8 Erysiphe_monoperidiata_MUMH4986_AB62212, 9 Erysiphe_monoperidiata_MUMH4987_AB62213, 10 Erysiphe_monoperidiata_MUMH4988_AB622214, 11 Erysiphe_monoperidiata_MUMH4990_AB622215, 12 Erysiphe_monoperidiata_MUMH4991_AB622216, 13 Erysiphe_japonica_ex_Quercus_AB022416, 14 Erysiphe_necator_ex_Vitis_DQ444327, 15 Erysiphe_necator_ex_Vitis_DQ189089; TREE PAUP_1 = (1,(((((2,3),((5,6),(((7,8),(10,(11,12))),9))),4),13),(14,15))); TREE PAUP_2 = (1,(((((2,3),((5,6),(((7,8),9),(10,(11,12))))),4),13),(14,15))); TREE PAUP_3 = (1,(((((2,3),((5,6),((7,8),9,(10,(11,12))))),4),13),(14,15))); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1332211287515; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 8685688663478640280; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 7901416193397851309; mqVersion 275; checksumv 0 3 3810978972 null getNumChars 1277 numChars 1277 getNumTaxa 15 numTaxa 15 short true bits 15 states 15 sumSquaresStatesOnly 334756.0 sumSquares 334756.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false true 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1280 656; setLocation -4 -4; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #8685688663478640280 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #8685688663478640280; getWindow; tell It; newAssistant #mesquite.lists.DefaultTaxaOrder.DefaultTaxaOrder; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 880 589; setLocation -4 -4; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; showPage 2; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #8685688663478640280 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 884.1332211194812.1323422264596308846; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 880 589; setLocation -4 -4; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 6; orientUp; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #7901416193397851309 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; rowNamesWidth 310; endTell; popAsTile true; popOut; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 394 589; setLocation -4 -4; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel on; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;