#NEXUS [written Wed Sep 27 15:18:16 SGT 2017 by Mesquite version 3.3 (build 854) at 178-212.priv23.nus.edu.sg/172.23.178.212] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=10; TAXLABELS 'Erysiphe carpi-laxiflorae ex_Carpinus_AB252470' 'Erysiphe carpi-laxiflorae ex_Carpinus_AB252471' 'Erysiphe carpi-laxiflorae ex_Carpinus_AB252472' 'Erysiphe carpinicola ex_Carpinus_AB252467' 'Erysiphe carpinicola ex_Carpinus_AB252468' 'Erysiphe carpinicola ex_Carpinus_AB252469' 'Erysiphe japonica ex_Swida_AB000941' 'Erysiphe pseudocarpinicola ex_Carpinus_AB252464' Erysiphe_sp._ex_Fernandoa_MUMH5081 'Erysiphe togashiana ex_Styrax_AB091775' ; END; BEGIN CHARACTERS; TITLE Erysiphe_fernandoae_ITS; DIMENSIONS NCHAR=550; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX 'Erysiphe carpi-laxiflorae ex_Carpinus_AB252470' CAGAGCGTGAGGCCCAGT-CGTAGCACCTGCTGCGGTCGGGGCCGACCCTCCCACCCGTGTCGACTTCTATCATGTTGCTTTGGCGGACCGGA---CGCGTGGCCGAGTCGTATCGCGCGACAAGGTGTCTGCTCCCTCGGCTTTCGTTATGAGAGCTGGGTCGCGTCCGCCAGAGACCCCCTC---AAAATACGTATGTTGTCCCTGTAGTCTAAAGTTTAAATAAAGTAAATTGATAAAACTTTCAACAACGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTTAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATAACA-CCCCCCTCAAGCTCCCACTTT-GGTGGTGTGGCTTCGGTGTTGGAGCTGCGCCAGTTGCTGGCGGCTCTGAAAGGCAGTGGCGGTCCCAGCTTCGGCTCTACGCGTAGTAC-TTTG-TTCTCGCGACAGGGTGAGGCT-GACGACTTGCC 'Erysiphe carpi-laxiflorae ex_Carpinus_AB252471' CAGAGCGTGAGGCCCAGT-CGTAGCACCTGCTGCGGTCGGGGCCGACCCTCCCACCCGTGTCGACTTCTATCATGTTGCTTTGGCGGACCGGA---CGCGTGGCCGAGTCGTATCGCGCGACAAGGTGTCTGCTCCCTCGGCTTTCGTTATGAGAGCTGGGTCGCGTCCGCCAGAGACCCCCTC---AAAATACGTATGTTGTCCCTGTAGTCTAAAGTTTAAATAAAGTAAATTGATAAAACTTTCAACAACGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTTAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATAACA-CCCCCCTCAAGCTCCCACTTT-GGTGGTGTGGCTTCGGTGTTGGAGCTGCGCCAGTTGCTGGCGGCTCTGAAAGGCAGTGGCGGTCCCAGCTTCGGCTCTACGCGTAGTAC-TTTG-TTCTCGCGACAGGGTGAGGCT-GACGACTTGCC 'Erysiphe carpi-laxiflorae ex_Carpinus_AB252472' CAGAGCGTGAGGCCCAGT-CGTAGCACCTGCTGCGGTCGGGGCCGACCCTCCCACCCGTGTCGACTTCTATCATGTTGCTTTGGCGGACCGGA---CGCGTGGCCGAGTCGTATCGCGCGACAAGGTGTCTGCTCCCCCGGCTTTCGTTATGAGAGCTGGGTCGCGTCCGCCAGAGACCCCCTC---AAAATACGTATGTTGTCCCTGTAGTCTAAAGTTTAAATAAAGTAAATTGATAAAACTTTCAACAACGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTTAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATAACA-CCCCCCTCAAGCTCCCACTTT-GGTGGTGTGGCTTCGGTGTTGGAGCTGCGCCAGTTGCTGGCGGCTCTGAAAGGCAGTGGCGGTCCCAGCTTCGGCTCTACGCGTAGTAC-TTTG-TTCTCGCGACAGGGTGAGGCT-GACGACTTGCC 'Erysiphe carpinicola ex_Carpinus_AB252467' CAGAGCGTGAGGCTCAGG-CGTGGCACCTGCCGCGATCTGGGCCGACCCTCCCACCCGTGTCGACTTCTATCTCGTTGCTTTGGCGGACCGGA---CGCGT---------------------------CGCGCTCCCCTGGCTCTCGTGATGAGGGCTGGGTCGCGTCCGCCAGAGACCGTATC---AAAACACGTATGTTGTTCCTGTAGTCTAAAGTTTACGCAAGCAAAATTGATAAAACTTTCAACAACGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTTAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATAACAACCCCCCTCGAGCCCCCATTTCTGATGGTGTGGTTCCGGCGTTGGAGTGCGTCCCCGCG-GGGCGCCTCTGAAAACCAGTGGCGGTTCCGGCGTGAGCTCTACGCGTAGTAC-AATACTCCCCGCGACAGAGAGACGACCGGCGACTTGCC 'Erysiphe carpinicola ex_Carpinus_AB252468' CAGAGCGTGAGGCTCAGG-CGTGGCACCTGCCGCGATCTGGGCCGACCCTCCCACCCGTGTCGACTTCTATCTCGTTGCTTTGGCGGACCGGA---CGCGT---------------------------CGCGCTCCCCTGGCTCTCGTGATGAGGGCTGGGTCGCGTCCGCCAGAGACCGTATC---AAAACACGTATGTTGTTCCTGTAGTCTAAAGTTTACGCAAGCAAAATTGATAAAACTTTCAACAACGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTTAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATAACAACCCCCCTCGAGCCCCCATTTCTGATGGTGTGGTTCCGG?GTTGGAGTGCGTCCCCGCG-GGGCGCCTCTGAAAACCAGTGGCGGTTCCGGCGTGAGCTCTACGCGTAGTAC-AATACTCCCCGCGACAGAGAGACGACCGGCGACTTGCC 'Erysiphe carpinicola ex_Carpinus_AB252469' CAGAGCGTGAGGCTCAGG-CGTGGCACCTGCCGCGATCTGGGCCGACCCTCCCACCCGTGTCGACTTCTATCTCGTTGCTTTGGCGGACCGGA---CGCGT---------------------------CGCGCTCCCCTGGCTCTCGTGATGAGGGCTGGGTCGCGTCCGCCAGAGACCGTATC---AAAACACGTATGTTGTTCCTGTAGTCTAAAGTTTACGCAAGCAAAATTGATAAAACTTTCAACAACGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTTAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATAACAACCCCCCTCGAGCCCCCATTTCTGATGGTGTGGTTCCGG?GTTGGAGTGCGTCCCCGCG-GGGCGCCTCTGAAAACCAGTGGCGGTTCCGGCGTGAGCTCTACGCGTAGTAC-AATACTCCCCGCGACAGAGAGACGACCGGCGACTTGCC 'Erysiphe japonica ex_Swida_AB000941' CAGAGCGTGAGGCTCAGT-CGTGGCATTTGCCGCGTGCTGGGCCGACCCTCCCACCCGTGTCGATTTATATCTTGTTGCTTTGGCGGGCCGGG-------CTGCGCCGACGCTGT-CCGCAAGGAAAGATGCGTCGGTCGCCCCCGCCGGCTTCGGCTGGAGCGCGTCCGCCAAAGACCCAACCAA-AAAAAACTCATGTTATCATTGCAGTCT-AAGTCTTTATTATTG-AATTGATAAAACTTTCAACAACGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTTAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATAAACACCCCC-TCCAGCTGCC-------TTTGCGTGGCTGCGGTGTTGGGGCACGTCGCGGTG-CGACGGCCCTGAAAGACAGTGGCGGTCCCGGCGTGGGCTCTACGCGTAGTAACCTTGCTTCTCGCGACAGAGTGACGACGGTTGGCTTGCC 'Erysiphe pseudocarpinicola ex_Carpinus_AB252464' CAGAGCGTGATGCTCAGGCCGTAGCATCTGCTGCGGGCTGGGCCGACCCTCCCACCCGTGTCGACTTCTATCTCGTTGCTTTGGCGGACCGGA-------------------------------CGCATCTGCTCCCCTGGCTCTCGTGATGAGGGCTGGGTCGTGTCCGCCAGAGGATGTAAC---AAAACACGTATGTCGTACCTGTAGTCTAAAGTTTACGCAAGCAAAATTGATAAAACTTTCAACAACGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTTAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATAACACCCCCCCTCGAGCCCCCATTTCTGGTGGTGTGGTTCCGGTGTTGGAGTGCGTCACGCTG-TGGCGCCTCTGAAAGACAGTGGCGGTTCCGGCGTGAGCTCTACGCGTAGTAC-ATTACTTCCCGCGACAGA?AGACGGACGGCGACTTGCC Erysiphe_sp._ex_Fernandoa_MUMH5081 --------GAGGCTCAGG-CGTGGCGTCAGCTGCGGCCTGGGCCGACCCTCCCACCCGTGTCGACTTCTATCGTGTTGCTTTGGCGGCCCGGACGCGCGAGGCCTGTCGGTCCATCTCGACAGGTGGTTGTGCTCCCCTGGCTCTCGCGATGAGGGCTGGGTCGTGACCGCCAGAGACCCCCCTC--AAAATACGTATGTTGTTCCTGTAGTCTAAAGTTTAATGAAGC-AAATTGATAAAACTTTCAACAACGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTTAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATAACAACCCCC-TCGAGCCGCCC--GTTTATGGTGTGGCTTTGGTGTTGGAGTGCGTCGCGCGT-CGACGGCTCTGAAAAACAGTGGCGGTCTCGGCGTGAGCTCTACGCGTAGTAC-TTTACTCCTCGCGACAGAGAGACGACGGTGACTTTGCC 'Erysiphe togashiana ex_Styrax_AB091775' CAGAGTGCGAGGCTCAGG-CGTGGCATCAGCTGCGGTCTGGG?CGACCCTCCCACCCGTGTCGACTTCTATCGTGTTGCTTTGGCGGCCCGGA--CGCGAGCCCTGTCGGTTTATGTCGACGGG-CATTGTGCTCCCCCGGCTCTCGTGATGAGGGCTAGGTCGCGGCCGCCAGAGACCCCCCCCTAAAAATACGCATGTTGTTCCTGTAGTCT??AG?TTATTGAATC-AAATTGATAAAACTTTCAACAACGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTTAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATAACACCCCCC-TCGAGCTGCCC--GGTTGTGGTGTGGCTCCGGTGTCGGAGTGCGTCGCGTGT-CGGCGGCTCTGAAAGACAGTGGCGGTCTCGGCGTGAGCTCTACGCGTAGTAC-TTTACTTCTCGCGACAGAGAGACGACGGTGACTTTGTC ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 550; END; BEGIN MYTREES; Title Erysiphe_fernandoae_ITS; ID 015ec22ce8b620; LINK Taxa = Taxa; TRANSLATE [0] 1 'Erysiphe carpi-laxiflorae ex_Carpinus_AB252470', [1] 2 'Erysiphe carpi-laxiflorae ex_Carpinus_AB252471', [2] 3 'Erysiphe carpi-laxiflorae ex_Carpinus_AB252472', [3] 4 'Erysiphe carpinicola ex_Carpinus_AB252467', [4] 5 'Erysiphe carpinicola ex_Carpinus_AB252468', [5] 6 'Erysiphe carpinicola ex_Carpinus_AB252469', [6] 7 'Erysiphe japonica ex_Swida_AB000941', [7] t8t 'Erysiphe pseudocarpinicola ex_Carpinus_AB252464', [8] 8 Erysiphe_sp._ex_Fernandoa_MUMH5081, [9] 10 'Erysiphe togashiana ex_Styrax_AB091775'; TREE PAUP_1 = (1,(2,3,((((4,5,6),7),(8)),10))); TREE PAUP_2 = (1,((2,3),((((4,5,6),7),(8)),10))); TREE PAUP_3 = (1,(2,3,(((((4,5),6),7),(8)),10))); TREE PAUP_4 = (1,(2,3,((((4,(5,6)),7),(8)),10))); TREE PAUP_5 = (1,((2,3),((((4,(5,6)),7),(8)),10))); TREE PAUP_6 = (1,((2,3),(((((4,5),6),7),(8)),10))); END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 550; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 550; END; BEGIN TREES; Title Erysiphe_fernandoae_ITS; ID 015ec22fa68226; LINK Taxa = Taxa; TRANSLATE [0] 1 'Erysiphe carpi-laxiflorae ex_Carpinus_AB252470', [1] 2 'Erysiphe carpi-laxiflorae ex_Carpinus_AB252471', [2] 3 'Erysiphe carpi-laxiflorae ex_Carpinus_AB252472', [3] 4 'Erysiphe carpinicola ex_Carpinus_AB252467', [4] 5 'Erysiphe carpinicola ex_Carpinus_AB252468', [5] 6 'Erysiphe carpinicola ex_Carpinus_AB252469', [6] 7 'Erysiphe japonica ex_Swida_AB000941', [7] 8 'Erysiphe pseudocarpinicola ex_Carpinus_AB252464', [8] 9 Erysiphe_sp._ex_Fernandoa_MUMH5081, [9] 10 'Erysiphe togashiana ex_Styrax_AB091775'; TREE MajRule = (7:0.194282,((1:0.0,2:0.0,3:0.001889):0.167589,((9:0.031248,10:0.036365):0.148175,(8:0.043027,(4:0.0,5:0.0,6:0.0):0.041306):0.035163):0.006842):0.194282); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1506496696531; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 5316914421322049898; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 615678919127651511; mqVersion 330; checksumv 0 3 2059509707 null getNumChars 550 numChars 550 getNumTaxa 10 numTaxa 10 short true bits 15 states 15 sumSquaresStatesOnly 111225.0 sumSquares 111225.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState true false 180; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1055 658; setLocation 8 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; desuppress; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #615678919127651511 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 0 -72; setLocation 8 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; getWindow; tell It; forceAutosize; endTell; hideWindow; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 16 6 1 1; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;