NEXUS
[File created by TreeBASE:  7/26/07  21:05:51]
[Matrix accession#: M1972]

BEGIN TAXA;
	TITLE M1972;
	DIMENSIONS  NTAX=11;
	TAXLABELS
		Ramaria_rainierensis	Clavariadelphus_pistillaris	Auricularia_delicata	Gomphus_floccocus	Geastrum_sessile	Geastrum_saccatum	Geastrum_rufescens	Geastrum_pleosporus_b	Geastrum_pleosporus	Geastrum_nanum	Geastrum_fimbriatum
	;
END;

BEGIN CHARACTERS;
	TITLE M1972;
	DIMENSIONS NCHAR=634;
	FORMAT DATATYPE = DNA MISSING = ? GAP = -  ;
	MATRIX
		Ramaria_rainierensis              -CTAACAAGGATTCCCCTAGTAACGGCGAGTGAAGCGGGAAGAGCTCAAATTTGAAATCTGGCGGCC--TCAGGTCGTCCGAGTTGTAGTC-TGGAGAAGCGTTTTCTGCGCCGGACCGTGTACAAGTCCCTTGGAACAGGGC-GTCATAGAGGGTGAGAATCCCGTCTTTGACACGGGCCTGCCGGTGCTTTGTGATGCGCTCTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAACGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAAAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAACGCTTGAAGTCAGTCGCGTCTTCCGGGACTCAGCCTTGCT-----TTT-GCTYGGTGTATTTCCTGGGGT-GACGGGCCAGCATCGATTTCGACCGTCGGAGAAAGGCTT-TGGGAATGTGGCACCT-TCGGGTGTGT-TATAGCCCTTGGTCGCATGCGACGGTTGGGATCGAGGATCGCAGCACG-----CCTTCAATGG---CCGGGGTTYGCCCACGTAA-CGT-GCTTAGGATGCT-GGCGTAATGGCTTTAAACGACCCGT
		Clavariadelphus_pistillaris       -CTAACCAGGATTCCCCTAGTAACGGCGAGTGAAGCGGGAAGAGCTCAAATTTGTAATCTGGCGGTC--TCTGGCCGTCCGAGTTGTAGTC-TGGAGAAGTGTTTTCCGTGCCGGACCGTGTACAAGTCCCTTGGAACAGGGC-GTCATAGAGGGTGAGAATCCCGTCTTTGACACGGAC-TGCCGGTGCTCTGTGATGCGCTCTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAACGGGTGGTAAATTCCATCTAAAGCTAAATATGGGCGAAAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAAC--TTGAAGTCAGTCGCGTCTCTCGGGACTCAGCCTTGCA-----TC--GCAAGGCGCATTTCCCGGGAC-GACGGGCCAGCATCGATTTCAGTCGCTGGAGAAAGGTCT-GGGGAATGTGGCACCTATCGGGTGTGT-TATAGCCCTGGGTCGTATGCAGCGATGGGGATCGAGGATCGCAGCACG-----CCTGTAATGG---ACGGGGTTCGCCCACGCAA-CGT-GCTTAGGATGCT-GGCGTAATGGCTTTAAGCGACCCGT
		Auricularia_delicata              -C------------CCCTAGTAACGGCGAGTGAAGCGGGAAGAGCTCAAATTTGAAATCTGGCGGTC--TAAGGCCGTCCGAGTTGTAATC-TAGAGAGGTGTTTTCCGTGCCGGACCGTGTACAATTCCCTTGGAACAGGGC-GTCATAGAGGGTGAGAATCCCGTCCATGACACGGAC-TACCGGTGCTCTGTGATACACCTTCAAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATACAGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAACGCTTGGAGTCAGTCGCGTCTGCCAGGACTCAGCCTTGCT-----TCT-GCTTGGTGCACTTCTTGGTG--GATGGGCCAGCATCGATTTTGATCGCCGGAAAAGGGYGG-GAGGAATGTGGCAGCTTTTGC-TGTGT-TATAGCCTTCTGTCGTACACGGTGGTTGGGATCGAGGACTGCAGCACG-----CCTT---TGG---TCGGGGTTCGCCCACGCCA-CGT-GCTTAGGATGCT-GGCGTAATGGCTTTAAACG------
		Gomphus_floccocus                 ACTAACAAGGATTCCCCTAGTAACGGCGAGTGAAGCGGGAAGAGCTCAAATTTGTAATCTGGCGGCCTTT--GGTCGTCCGAGTTGTAGTCTC-GAGAAGCGTTTTCTGCGCCGGACCGTGTACAAGTCCCTTGGAACAGGGC-GTCGTAGAGGGTGAGAATCCCGTCTCTGACACGGACCGCC-GGTGCTTTGTGATGCGCTCTCAAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAACGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAAAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGNACGTGAAATTGCTGAAAGGGAAACGCTTGAAGTCAGTCGCGTCTCCCGGGANTCAGCCGTGCCCCCCATCCGGCACGGTGTACTTCCTGGGTGTGACGGGCCAGCATCGATTTCGTCCGTCGGAGAAAGGCCTTGGGGAATGTGGCACCT-TCGGGTGTGTATATAGCCCTGGGTCGCATGCGACGGTTGGGATCGAGGACCGCAGCACGTTTATCNTTCAATGGGGCTCGGGGTTCGCCCACGCAAACGTTGNTTAGGATGCTTGGGGTAATGGCTTTAAGTGACCCGT
		Geastrum_sessile                  -------------CCCCTAGTAACGGCGAGTGAAGCGGGAAAAGCTCAAATTAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGGAGAAGTGTTTTCCGYGCTGGACCGAGTACAAGTCCTTTGGAACAAGGCAGTCATACAGGGTGAGAATCCCGTCTACGACACGGACTACCA-GTGCTCTGTGATACACTCTCAACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATACAGGCGAAAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGCGAAATTGTTGAAAGGGAAACGCTTGGAGTCAGTCGCGTCTTCAGAAACTCAGCCTGGCT-----TCT-GCCTGGTGTACTTTTCTGTGA-GACGGGCCAGCATCAGTTTCGGTCACCAGAAAAAGGCGA-GAGGAAGGTGGCACCT-CCGGGTGTGT-TATAGCCTCCCGTCGTATGTGGTGGCTGGGACTGAGGACCGCAGCACG-----CCTCTAATGG---CCGGGGTTCGCCCACGTAA-CGT-GCTTAGGATGCT-GGCGTAATGGCTTTAAACGACCCGT
		Geastrum_saccatum                 ACTAACAAGGATTCCCCTAGTAACGGCGAGTGAAGAGGGAAAAGCTCAAATTTAAAATCTGGCGGTC--TACGGCCGTCCGAGTTGTAATC-TAGAGAAGTGTTTTCCGCGCTGGACCGTGTACAAGTCCTTTGGAACAAGGC-GTCATAGAGGGTGAGAATCCCGTCTACGACACGGACTGCCAAGCGCTTTGTGATACAGTCTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATGGGCGAAAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAACGCTTGAAGTCAGTCGCGTCTTCAGAAATTCAGCTGGGCT-----TCT-GCCCTGTGTACTTTTCTGTGG-GACGGGCCAGCATCAGTTTCGGCTGCCAGAAAAAGGTGG-GAGGAAGGTGGCACCT-CCGGGTGTGT-TATAGCCTCCGATCGTATGTGGCAGCTGGGACTGAGGACCGCAGCACG-----CCTTCA-TGG---CCGGGNTTCGCCCACGTNA-CGT-GCTTAGGATGCT-GGCGTAATGGCTTTAAGCGACCCGT
		Geastrum_rufescens                --TAACAAGGAT-CCCCTAGTAACGGCGAGTGAAGAGGGATAAGCTCAAATTTGAAATCTGGCGGCCCTTTGGGTCGTCCGAGTTGTAATT-TAGAGAAGTGTTTTCCGCGCTGGACCGTGTACAAGTCCTTTGGAACAGGGC-GTCATACAGGGTGAGAATCCCGTCTACGACACGGACCACCA-GTGCTTTGTGATACACTCTCAACGAGTCGAGTTGTTTGGGAATGCACCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATACAGGCGAAAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAACGCTTGAAGTCAGTCGCGTCTTCAGAAATTCAGCCTGGCT-----TTCAGCCTGGTGTACTTTTCTGTTG-GACGGGCCAGCATCAGTTTTGGCCGCTAGAAAAAGGTGG-GAGGAAGGTGGCACCT-CCGGGTGTGT-TATACCCTCTCATTGTATGTGGCGGCTGGGACTGAGGACCGCAGCACG-----CCTTATATGG---CCGGGGTTCGCCCACGTAA-CAT-GCTTAGGATGCT-GGCGTAATGGCTTTAAACGACCCGT
		Geastrum_pleosporus_b             -------AGGATACCCT--ACAACGGCGAGTGAAGAGGGAAGAGCTCAAATTTTAAATCTGGTGGCC--TACGGCCATCCGAGTTGTAATC-TAGAGAAGTGTTTTCCGTGCTGGACCGTGTACAAGTCCTTTGGAACAAGGC-GTCATAGAGGGTGAGAATCCCGTCTACGACACGGACTGCCA-GTGCTTTGTGATACACTCTCAACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATGGGCGAAAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAACGCTTGAAGTCAGTCGCGTCTTCAGAAATTCAGCTCGGCT-----TCT-GCCTTGTGTACTTTTCTGTTG-GACGGGCCAGCATCAGTTTTGGCCGCCAGAAAAAGGTGG-GAGGAAGGTGGCACCT-CCGGGTGTGT-TATAGCCTCTCATCGTATGTGGCGGCTGGGACTGAGGATCGCAGCATG-----CCTTCAATGG---CCGGGGTTCGCCCACGTAA-CGT-GCTTAGGATGCT-GGCGTAATGGCTTTAAACGACCCGT
		Geastrum_pleosporus               ACTAACAAGGATTCCCCTAGTAACGGCGAGTGAAGAGGGAAGAGCTCAAATTTTAAATCTGGTGGCC--TACGGCCATCCGAGTTGTAATC-TAGAGAAGTGTTTTCCGTGCTGGACCGTGTACAAGTCCTTTGGAACAAGGC-GTCATAGAGGGTGAGAATCCCGTCTACGACACGGACTGCCA-GTGCTTTGTGATACACTCTCAACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATGGGCGAAAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAACGCTTGAAGTCAGTCGCGTCTTCAGAAATTCAGCTCGGCT-----TCT-GCCTTGTGTACTTTTCTGTTG-GACGGGCCAGCATCAGTTTTGGCCGCCAGAAAAAGGTGG-GAGGAAGGTGGCACCT-CCGGGTGTGT-TATAGCCTCTCATCGTATGTGGCGGCTGGGACTGAGGATCGCAGCATG-----CCTTCAATGG---CCGGGGTTCGCCCACGTAA-CG--GCTTAGGATGCT-GGCGTAATGGCTTTAAACNACCCGT
		Geastrum_nanum                    --TAACAAGGAT-CCCCTAGTAACGGCGAGTGAAGAGGGATAAGCTCAAATTTGAAATCTGGCGGC--TTAAGGTCGTCCGAGTTGTAATC-TACAGAAGTGTTTTCCGCGCTGGACCGTGTACAAGTCCCTTGGAACAGGGC-GTCATACAGGGTGAGAATCCCGTCTACGACACGGACTACCA-GTGCTTTGTGATACACTCTCAACGAGTCGAGTTGTTTGGGAATGCACCTCAAAACGGGTGGTAAATTCCATCTCAAGCTAAATACAGGCGAAAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAACGCTTGAAGTCAGTCGCGTCTTCAGAAATTCAGCTTGGCT-----TTC-GCCTGGTGTACTTTTCTGTTG-GACGGGCCAGCATCGGTTTCGGCCGCCAGAAAAAGGTGG-GAGGAAGGTGGCACCT-CCGGGTGTGT-TATAGCCTCTCATCGTATGTGGCGGCTGGGACTGAGGACCGCAGCACG-----CCTTTAATGG---CCGGGGTTCGCCCACGTAA-CGT-GCTTAGGATGCT-GGCGTAATGGCTTTAAACGACCCGT
		Geastrum_fimbriatum               ACTAACAAGGATTCCCCTAGTAACGGCGAGTGAAGAGGGAAAAGCTCAAATTTAAAATCTGGCGGCC--TACGGTCGTCCGAGTTGTAATC-TAGAGAAGTGTTTTCTGTGCTGGACCGTGTACAAGTCCTTTGGAACAAGGC-GTCATAGAGGGTGAGAATCCCGTCTACGACACGGACTACCA-GTGCTCTGTGATACACTCTCAACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATACAGGCGAAAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAACGCTTGAAGTCAGTCGCGTCTTCAGAAATTCAGCCTGGCT-----TCT-GCCTGGTGTACTTTTCTGTTG-GACGGGCCAGCATCAGTTTTGGCCACCAGAAAAAGGTGG-GAGGAAGGTGGCACCT-CCGGGTGTGT-TATAGCCTCTCATCGTATATGGTGGCTGGGACTGAGGACCGCAGCACG-----CCTTTA-TGG---CCGGGGTTCGCCCACGTAA-CGT-GCTTAGGATGCT-GGCGTAATGGCTTTAAACGACCCG-
	;
END;

BEGIN CODONS;
CODONPOSSET * CodonPositions = 
 N: 1 - 634 ; 
 CODESET * UNTITLED = Universal: all ; 
 END;

BEGIN ASSUMPTIONS;
OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; 
 END;