#NEXUS [written Mon Feb 13 12:40:55 JST 2012 by Mesquite version 2.75 (build 564) at MJ-AN-HP/192.168.1.5] BEGIN TAXA; TITLE ITS_Taxa; DIMENSIONS NTAX=34; TAXLABELS Dictyocatenulata_alba_5358 Dictyocatenulata_alba_5359 Dictyocatenulata_alba_5360 Dictyocatenulata_alba_8401 Dictyocatenulata_alba_12918 Aspicilia_berntii_EU502747 Aspicilia_zonata_EU057951 Baeomyces_rufus_AF448457 Belonia_russula_HM244759 Carestiella_socia_AY661682 Conotrema_urceolatum_AY661686 Cryptodiscus_microstomus_FJ904676 Cryptodiscus_pini_HM244762 Cryptodiscus_tabularum_FJ904690 Dibaeis_baeomyces_DQ782844 Diploschistes_diacapsis_AF228317 Diploschistes_muscorum_AF228319 Eurotium_herbariorum_AY373887 Graphis_scripta_AF229195 Megaspora_verrucosa_AF332122 Neosartorya_stramenia_EF669984 Ocellularia_interponenda_AJ508681 Ocellularia_perforata_AJ508682 Ochrolechia_parella_AF329174 Ostropa_barbara_HM244773 Pertusaria_albescens_AF329177 Petractis_nodispora_FJ588710 Placopsis_santessonii_AY212826 Sarea_resinae_AY590792 Schaereria_fuscocinerea_AF274090 Schizoxylon_albescens_DQ401144 Siphula_georginae_DQ337608 Stictis_brunnescens_AY661688 Trapeliopsis_steppicus_AF353574 ; END; BEGIN CHARACTERS; TITLE ITS_Matrix; DIMENSIONS NCHAR=519; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Dictyocatenulata_alba_5358 GCGCCCGTCTC-----TCCCACCCTGAATATCCTATCTCT---GTTGCTTTGGCGGGTCG---TGTTGCCGA---------GCTCGTCT-CGGCGGCCGT--CGTGC-CCGCCAACGG---CCCA--TTAAAACACGTCTT-GAA-----CAATGTAGTCTGAAA------CTATATTATAATTGC--TGAAAACTTTCAACAACGGAT-CTCTTGGTTCCAGCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCCCTGGCATTCCGGAGGGCACGCCTGTTCGAGCGTCATT--ACACACCTCAAGCTC----------TGCTTG-GCTATGGGCGCTTGTC--------TCTGCGAGA----CTCGCC-CGAAAATCAGCG-GCGGTGTC--GTCCGC-CCCCG-AGCGCATTAACTTTACTG-ACTCGCTCCGGTGGA-CTTGGCGGC---TCCTGCCGG Dictyocatenulata_alba_5359 GCGCCCGTCTC-----TCCAACCCTGAATATCCTATCTCT---GTTGCTTTGGCGGGTCG---TGTCGCCGA---------GCTCGTCT-CGGCGGCCGT--CGTAC-CCGCCAATAG---CCCC--CCAAAACACGTCTT-GAA-----CAATGTAGTCTGAAG------ATATACATTAATTGC--TGAAAACTTTCAACAACGGAT-CTCTTGGTTCCAGCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCCCTGGCATTCCGGAGGGCACGCCTGTTCGAGCGTCATT--ACGCACCTCAAGCTC----------TGCTTG-GTTATGGGCGCCCGTC--------TCAGCGAGA----CTCGCC-CGAAAATTAGCG-GCGACGTC--GTCCGT-CCCCG-AGCGCATTAACTTTACTG-ACTCGCTCCGGTGGA-CCTGGCGGT---GCCTGCCGG Dictyocatenulata_alba_5360 GCGCCCGTCTC-----TCCAACCCTGAATATCCTATCTCT---GTTGCTTTGGCGGGTCG---TGTCGCCGA---------GCTCGTCT-CGGCGGCCGT--CGTAC-CCGCCAATAG---CCCC--CCAAAACACGTCTT-GAA-----CAATGTAGTCTGAAG------ATATACATTAATTGC--TGAAAACTTTCAACAACGGAT-CTCTTGGTTCCAGCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCCCTGGCATTCCGGAGGGCACGCCTGTTCGAGCGTCATT--ACGCACCTCAAGCTC----------TGCTTG-GTTATGGGCGCCCGTC--------TCAGCGAGA----CTCGCC-CGAAAATTAGCG-GCGACGTC--GTCCGT-CCCCG-AGCGCATTAACTTTACTG-ACTCGCTCCGGTGGA-CCTGGCGGT---GCCTGCCGG Dictyocatenulata_alba_8401 GCGCCCGTCTC-----TCCAACCCTGAATATCCTATCTCT---GTTGCTTTGGCGGGTCG---TGTCGCCGA---------GCTTGTCT-CGGCGGCCGT--CGTGC-CCGCCAACAG---CCCA--TTAAAACACGTTTTTGAA-----CAATGCAGTCTGAAG------CTATATTATAATTGC--TGAAAACTTTCAACAACGGAT-CTCTTGGTTCCAGCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCCCTGGCATTCCGGAGGGCACGCCTGTTCGAGCGTCATT--ACACACCTCAAGCTC----------TGCTTG-GCCATGGGCGCCTGTC--------TCCGCGAGA----CTCGCC-CGAAAACCAGCG-GCGGTGTC--GTCCGT-CCCCG-AGCGCATTAACTTTACTG-ACTCGCTCCGGCGGA-CCTGGCGGC---GCCTGCCGG Dictyocatenulata_alba_12918 GCACCCGTCTC-----TCCAACCCTGAATATCCTATCTCT---GTTGCTTTGGCGGGTCG---TGTCGCCGA---------GCTCGTCT-CGGCGGTCGT--CGTGC-CCGCCAACAG---CCCA--TTAAAACACGTTTT-GAA-----CAATGCAGTCTGAAG------CTATATTATAATTGC--TGAAAACTTTCAACAACGGAT-CTCTTGGTTCCAGCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCCCTGGCATTCCGGAGGGCACGCCTGTTCGAGCGTCATT--ACACACCTCAAGCTC----------TGCTTG-GCCATGGGCGCCTGTC--------TCCGCGAGA----CTCGCC-CGAAAACCAGCG-GCGGTGTC--GTCCGT-CCCCG-AGCGCATTAACTTTACTG-ACTCGCTCCGGCGGA-CCTGGCGGC---GCCTGCCGG Aspicilia_berntii_EU502747 GGGCCCGAC-----CCTCCCACCCTTTGTGTA-TTTACCTC-TGTTGTTTCGGCGGATCCCCGG----GGTCACGGCGCTGGGTTGGCCAGCCTAGCTACCGGTCCC-GGTCCGCCAG--AGGCCCTTTCTA--TTCTGAAT--T--TATCCACGCCGTCTG--AAC--ACACAAGTA--AATAAACC--AAAACTTTCAACAACGGAT-CTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGCATTCCGGGGGGCATGCCTGTTCGAGCGTCATT--ACACCTCTCAAGC----------TCAGCTTG-GTATTGGGCTTCCGTC-------CCCC-ACGGA----CGGGCC-TGAAAATCAGTG-GCGGTGCACGGCCGGT--GCTCAAGCGTAGTTATCTTA----TCCCGCTTTGGAGTCTCCGGGCGG----ATCCGCCAG Aspicilia_zonata_EU057951 GGGCCTGAC-----CCTCCCACCCTTTGTGTA-TGTACCTC-TGTTGCTTCGGTGGATCC--------GGCCGCGGT-----------------------------C-GATCCGCCAG--AGGCCCTATTTA--TTCTGAAT--G---ATCGGTGCCGTCTG--AGT--CCACATGCA--AATAAACT--AAAACTTTCAACAACGGAT-CTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATT--ACACCTCTCAAGC----------TCAGCTTG-GTATTGGGCCTCCGTC-------CCCCCGCGGG----CGGGCC-TGAAAATTAGTG-GCGGTACA-GCCCGGT--GCTCAAGCGTAGTAACATTACC--TCCCGCTTCAGAGTCACCGGATGG----ACCCGCCAG Baeomyces_rufus_AF448457 GGGCCCGAA-----CCTCCCACCCCTTGTGTATCTACCTCT--GTTGCTTTGGCGGGCCCGGGG-----------AACACCCCCCGCCGGTTTCGGCTGGTGAGCGC-CCGTCGGAGG------ACCTCCAAACTCGATCT-------ATCAATGACGTCTGAGTG-------ACCAAACAATGAATT--AAAACTTTCAACAACGGAT-CTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATT--AGCCCACTCAAGCC----------CAGCTTG-GTATTGGATCTCGCCC--------CCCCGGGGA----CGGATC-TCAAAATCAGCG-GCGGAACA--GCTGAT--CGTCAAGCGTAGTCAATTCTAT---CCCGCTTCGACCGATCCAGTTGAT---TCCAGCCGG Belonia_russula_HM244759 GAGAGAAAGGG---CCCCCCTTCGGGGGTCCGCACCTCCCAACCCTTTGTCGACGTATCAATGT----TGCTTCGGCGGGCTGCCGCCCCCGGCGGCTCCTATAACC-CCGCCAGAGG--CCCAACCCACAAAACTCCGTTC--G--AAAACTCGCAGTCTGAGTA------TACACTTAAATAGTCA--AAAACTTTCAACAACGGAT-CTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCCTGGCATTCCGGGGGGCATGCCTGTTCGAGCGTCATT--ACACCAGTCGAGC----------CCCGCTCG-GTGATGGGGGATCGTC--------CTTCGGGGG----CGCCCC-CGAAAGTTAGCG-GCGATGTC--GCTGGA--TCTGGAGCGCAGTGATCTTCTT---TTCGCTC-TCAGTCCCCGGCGGCC---ATCGGCCGG Carestiella_socia_AY661682 GGGACACAC-----TCTCCACCCATTGCTT-GTTATACCTA--GTTGCTTTGGCGGGCCGCGGT-------CCCT-GTGGCC-CCGCCGGCTCCGGCTGGTGCGCGC-TCGCCGAAGG--TCAAAACCAGAAACTCTTGAAG-TA--AACATGTGAAGTCTGATAAC--AAAACTATGAAAATAGCCT--AAAACTTTCAACAACGGAT-CTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTT-TCACCCCTCAAGC----------TAAGCTTG-GTATTGGGCGGCAGCT-TTCTCCCCCGGGGGGGG---CTCCCC-CGAAATGCAGCG-GCGGTGCG--GCCGGA-TTCCCTAGCGCAGTGACTTTACAA-TCTCGCTA-CAAGGAGTTCGCGTCT-GCCCCGGCCGG Conotrema_urceolatum_AY661686 GGAAC--------CTCTCCACCCACTGCCTGTGAATACCTA--GTTGCTTTGGCGGGTCGAGCT-------CCCT--GGGCT-CTGTCGGTCCCCGCCGGCGAGAAC-CTGCCAGAGG--TCAAAC----AAAACTCTGTCG-TA--A--CCGTGGAGTCTGAGAA----ACTATTTTTAAATAGCCTTAAAAACTTTCAACAACGGAT-CTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTA-TCGCCCCTCAAGC----------CCGGCTTG-GTATTGGGTGCCGCCC--------CCGCGAGGAGG--CGCGCC-CGAAAGGCAGCG-GCGGTGCG--GCCGG--CTCCCTAGCGCAGTGACCTTTTA--TTCCGCTAGTCGGGAAC-CGCGCCC-GCGTCGGCCGG Cryptodiscus_microstomus_FJ904676 CAGTGAATACGTACCTCTGTTGCTTTGGCAGGCCGTGGGCGC-AAGCCCCCGCCGTGCTGTGGC----CGCCACCCGTGGCC-CCACGCCCGGCGAGCGCCTGCC--------AGGAG--CCTCAACCAAAACCTTTATAA------AACA-GTGACGTCTGAGCG------A-TAAATAAATAGTTA--AAAACTTTCAACAACGGAT-CTCTTGGTTCCAGCATCGATGAAGAACGCAGCGAAATGCGATAACTAATGTGAATTGCAGAATTCAGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATT--ACACCCCTCAAGC----------TCTGCTTG-GTATTGGGAGCTCGCC---TCGTGCCCCGAGG-----CGTGCC-CGAAAGTTAGCG-GCGACGTG--CCCGGC-ACC-CAAGCGCATTAAATATCCA---TTCGCTT-TGGGCCCGTTGGGTTC---GCCAGCCGG Cryptodiscus_pini_HM244762 GGATCATTACCGAGTTCGGTCTCCTTAGGGAGCCATCTCCAC-CCAGTGCGAACCAACTTTAGT----TGCTTTAGTGGGCC-GCG-GCCCTGCTGCCGCCGGCCTC-GGCTGGCGCG--CGCCCGCTAGAGAATTTTCAATCTG--ATTACGCGACGTCTGAGCA------GGAAAATAAATGCAAA--AAA-CTTTCAACAACGGAT-CTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCCGCGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATT--TACATCCTCAAGC----------CCAGCTTG-GTATTGGAGGCC-----------GCCCCCGGG-----CGCCCC-CGAAACGCAGCG-GCGACGTA--GCCGTG-CTCCC?GG?GTAGTGACTCATTA---CCGCCCC-GGAGCCGGTCGTG--C---GTCCGCCGG Cryptodiscus_tabularum_FJ904690 GGATCATTACCGAGTTTGA-CTCTTC--GGAGCCATCTCCAC-CCTGTGATTAATCTCTCT-GT----TGCTTTGGCGGGCC-GTTTGGTCTCCAGCCACTGGCTTT-G-CTGGTGAG--CGCCCGCCAGAGACTTTACTATCTG--AATATCCG-TGTCTGAGCA------A-AACATAAATGCAAA--AAAACTTTCAACAACGGAT-CTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCATATTGCGCCTTTTGGTATTCCGAGAGGCATGCCTGTTCGAGCGTCATT--ATCACTCTCAAGC----------TTAGCTTG-GTATTGGAG-CT-----------GCATTTGG------CAGTTT-CGAAAAATAGCG-GCGACGTA--GCCGGC-CT--CTGGTGCAGTGACTT-TCT---CACCACT-TGGCTCGGTCGTG--C---GTTTGCCGG Dibaeis_baeomyces_DQ782844 GGTCTCGACCC----TCC--ATCCCGTGTGAACTTA-TACC--AAAATTTTGTTGCTTCGGGGCTTCTCTGC----------CCCGATAG----------------T-ACACCTTAAA-----TTCGTTTTAATTTATGCA----------------GTCTGAGAAA----ATTTGAATCAATCAAAT--AAAACTTTCAACAACGGAT-CTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCACCTTTTGGTATTCCGAAAGGTATGCCTGTCCGAGCGTCATT--TCACCACTCAAACTT--------CTAATTTA--GTTTGGTCTTGGATCATATGGACTT-TCGAGTC---CATGATCTTAAAATCATTG-GCGGCGCA--ATATGA-ATCCCAAGCGTAGTGA-CACTATTTT-TTGCTT-CGAGGATCTGTGATGT----GGTAGCCA Diploschistes_diacapsis_AF228317 GGGTCCCAACC----TCCCGACCCCGTGCGTACCAAAAAAC-TGTTGCTTTGGCGGGTCC--------------------------------------------CCCCCCGCCGAAGG-----TGCATCCAAACCCCTCTAGAA---------TTCGGTCTGAAC---ACGCACGAACGCAATTGCCA--AAAACTTTCAACAACGGAT-CTCTTGGTTCTGGCATCGATGAAGAACGCAGCAAAATGCGATAAGTAATGTGAATTGCAGAATTCAGCGAATCATCGAATCTTTGAACGCACATTGCGCCCCCTGGAATTCCGGGGGGCATGTCTGTCCGAGCGTCGCGAAACCATCGTCGACCGGG-------GTCCTTTG-GCCCCGGACGGAGTTGGGGGATACGTTCGGACGAA--CGCCCC-CGAAAATCAGCG-GCGGTTCG--GTCGAA--CCCCTAGCGCGGTGGATCATT----CTCGCTACCGGGGATCCGACCGTT----CCCGCCGG Diploschistes_muscorum_AF228319 GGGTCC-AACC----TCCCGACCCCGTGCGTACCGAAAAAC-TGTTGCTTTGGCGGG-CC--------------------------------------------CGCCCCGCCGAAGG-----TGCATCCAAACCCCTCTAAAAA--------TTCGGTCTGAACG--ATGTACGAACGCAATTGCCA--AAAACTTTCAACAACGGAT-CTCTTGGTTCTGGCATCGATGAAGAACGCAGCAAAATGCGATAAGTAATGTGAATTGCAGAATTCAGCGAATCATCGAATCTTTGAACGCACATTGCGCCCCCTGGCATTCCGGGGGGCATGTCTGTCCGAGCGTCGCGAAACTGTCGTCGACCGGG-------GCCCGTTG-GCCCCGGGCGGAGTTGGGGGATGCGTTCCGACGAA--CGCCCCTCGAAAATCAGCG-GCGGTTCG--GTCGAA--CCCCTAGCGCGGTGGATCATT----CTCGCTACCGGGGATCCGACCGAT----CTCGCCGG Eurotium_herbariorum_AY373887 GGGTCCAA------CCTCCCATCCGTGTCTATCTGTACCCT--GTTGCTTCGGCGTGGCCACGG------------------------------------------C-CCGCCGAAGA--CTAACATTTGAACACTGTCT-------GAAGTTTGCAGTCTGAGTT------TTTAGTTAAACAATAATTAAAACTTTCAACAACGGAT-CTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAAATGCGATAATTAATGTGAATTGCAGAATTCAGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATT--GCTGCCCTCAAGC----------ACGGCTTGTGTGTTGGGCTTCCGTCCCTGGTAAC----GGGGA---CGGGCC-CAAAAGGCAGTG-GCGGCACCATGTCTGG-TCCTCGAGCGTATGGGGCTTTGTC-ACCCGCTCCCGTAGGTCCAGCTGGC--AGCTAGCCTC Graphis_scripta_AF229195 GAGTCCGATCC----TCCCAACCCTTTGTTGATTGAATTTT--GTTGCTTCGGCGTGGCGAGACTTCACTGT----------CCCGTCGGCTTCGGTTGGTGTGTCT-ACGCCGAAGG-----ATTACTCAAAATCGTTCAA----------ATATTGTCTTAATCA----GTTTTTATCAATGTTTA--AAAACTTTCAACAACGGAT-CTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTCGGTATTCCGGGGGGCATGTCTGTTCGAGCGTCGC----AAACATATGATCAA--------ACAATTTA-----TTGTTTGGAATTAGGAATTCGTGTCTAATA---CGTT-TCTGAAAATTATCG-GCGGATTG--ATA-GA-ACTCCTAACGCGTTGAACAATGTTTCGTTAGTT-GCAGTTTCTGCTCAGT----CTTGCCGG Megaspora_verrucosa_AF332122 GGGCCTGAC-----CCTCCCACCCTTTGTGTA-TATACTCT-CGTTGCTTCGGCGTACCTCGCG----GTCAATGGTGCTGCTCGACAC---------GCCGGACCC-GGGCCGTCAG--TGGCCCCCATCAA-TCCTGAAT--G--TATCGGTGACGTCTG--AGC--GTACACATGCAAAACGAAC--AAAATTTTCAACAACGGAT-CTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAACCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTCCGAGCGTCATT--GCACCTCTCAAGC----------GCAGCTTG-GTATTGGGCTGTCGTC-------CCCC--GGGA----CGGGCC-TGAAAATCAGTG-GCGGTGCA--GCCGGT--ACTCGAGCGCAGTAGAATCA------TCGCTCCGGAGTCTCCGGCTGG----ACCCGCCAA Neosartorya_stramenia_EF669984 GGGTCCAA------CCTCCCACCCGTGTCTAT-TGTACCTT--GTTGCTTCGGCGGGCCCGCCGTTTCGACGGCCGCCGGGGAGGCCTCGCGCCCCCGGGCCCGCGC-CCGCCGAAGA--CCCCAACATGAACGCTGTTCTG-----AAAGTATGCAGTCTGAGTT------TGATTACCATAATCAGTTAAAACTTTCAACAACGGAT-CTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATT--GCTGCCCTCAAGC----------ACGGCTTGTGTGTTGGGCCCCCGTCCCCGGTTTCCCCCGGGGA---CGGGCC-CGAAAGGCAGCG-GCGGCACCGCGTCCGG-TCCTCGAGCGTATGGGGCTTTGTC-ACCCGCTCT-GTAGGCCCGGCCGGC--GCCAGCCGAC Ocellularia_interponenda_AJ508681 GAACCCGAACT----TTCCAACCCTTTGCGAACTGTGATT---GTTGCTTTGGCGGGCCG-TGTTCTACGGA------TCCCATCGGCT-TTTTAGCTGGTGCGTGC-TTGTCGAAGT---TCCT--TCTAAACTCAGTTT--A--------AACTTGTCTGA------TTTTAGTAATCAAATT--ATTAAAACTTTCAACAACGGAT-CTCTTGGCTCGGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAGTTCAGTGAATCATCGAGTTTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCGCA--ATGCATCTCAAGCTAGCTAAAGCTGTGCTTG-GATTTGGCGGTACGTC--------CCT-CGGGG----CGGCTC-CAAAAATTAACG-GCAGCCCG--GCCTGA-CTCCC-AGCGCGTTGAATTTTTT-----CGCTGGCAGAGG-CAAGACCGT---TCCCGCCGG Ocellularia_perforata_AJ508682 GAGCCCGGACT----TCCCAACCCTT-GCGAATAAATATC---GTTGCTTTGGCGGGTCG-AGACTTTCGAAAGATATTCTCCCCGGCG-CGT--GCTGGAGCGTGC-CCGCCGAAGT---TACC--TC-AAATTC--CTT--C--------AATCAGTCTGA------TTTTTGAAAACAATGCCAAAAAAAACTTTCAACAACGGAT-CTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCACCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCGCA--ATATACCTCAAGCTGGCCAAGGCTGTGCTTG-GATTTGGCGGTACGTC--------CCG-CGGGG----CGACTC-CGAAAACTAGCG-GCTGTTCG--GTTTGA-CTCCC-AGCGCGTTGAATTTTTT----TCGCTGATGGAGA-TCAATCGTC---CTTCGCCGG Ochrolechia_parella_AF329174 GGGCCCGAC-----CCTCCCATCCCGTGTGTACGTACCTCT--GTTGCTTCGGCGGGCCC-------------------------------------------GTAC-CCGCCAGAGG---CCCTCACCCAAACCCGATTGT------ATCAGTGAGGTCTGAGTG--------TATCGCAATGAACT--AAAACTTTCAACAACGGAT-CTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAGGGGCATGCCTGTCCGAGCGTCATT--ACACCTCTCAAGC----------TCGGCTTG-GTCTTGGGCCCCGTCC--------TTCGCGGG-----CGGGCC-CGAAAGTCAGTG-GCGGTGCC--GCCGGG--CTTCAAGCGAAATTGTCTCGTA---CCCGCTTCAGAAGTCTCGGGGGGG---GCTGGCCAG Ostropa_barbara_HM244773 GGATCGCGGTGCCCTCTCCACCCATTGAAT-ATTATACCCA--GTTGCTTTGGCGGGTCGTGGCATCACGTCTCAGTGTGCC-CCACCGGCTCAGGCTGGTGCGAAC-CCGCCAGAGG--TCCATACCA-AAACTCTTGAAG-TA--AAACAATGAAGTCTGA-ATT--TATTTTTAAAAAATAGCCT--AAAACTTTCAACAACGGAT-CTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCCTGGCATTCCGGGGGGCATGCCTGTTCGAGCGTCATTT-ACACCCCTCAAGCA---------TAAGCTTG-GTATTGGAGGCCGCCTCAACCCCTTCGGGGGGAGTGGCGCCCC-CGAAATGCAGCG-GCGGTGCG--GCCGAGTCTTCCTAGCGCAGTGACTTTTAAATTCTCGCTA-CATGGAGCTCGTCTTC---CCCGGCCGG Pertusaria_albescens_AF329177 GGGCCCGCGCC---TCCCCCACCCCGTGCGAACGCCTTTCCGTCCCCGCACGACGTCG---GTCGCTCCCGGGCGC--AACCACCCCC--CTTCGAGGGGGGAGGGTGCCGCCGGAAGGACCCGTCCCGTAAACTCTTGCGATACGCAAACCGTGCCGTCTGAG-------CCCCACGAGAAATCG-CACAAAACTTTCAACAACGGAT-CTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCCTGGCATTCCGGGGGGCATGCCTGTTCGAGCGTCATG--ACACCCTTCGAGCCT-------CGCGGCTTG-GTGCTGGGCCC-CGCC--------CGG-GAGGG----CGGGCC-CGAAAGTCAGTG-GCGGCGCG--GCCGGG-CTTCG-AGCGTAGT-AACCATCGC-GACCGCTCCGGAAGCCCCCGGCCGG---GCCCGCCAG Petractis_nodispora_FJ588710 GGATCCGAGCC---CTCCCAACCCCATGTGAACTTTTACCC--GTTGCTTTGGCGGGCCGCTGCCTTGCGCA-------CCGCACGGCT-CTT--GCTTGCGAGTGC-CCGCCAAAGG---CCCCCATTTAAAATCTCATT--AT-----CAAAGTGGTCTGAATGTCCTTTTTAGTGGCAAATCCAATAAAAACTTTCAACAACGGAT-CTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCCGGTACTCCGGGGGGCATGCCTGTTCGAACGTCATG--ACAGCCCTCAAGCT---TCGCTTGGTGTTGG-GGTGTCGCGCCCCCAA--------ACT-GGAGC----GCCCCC-CGAAAATAATTG-GCGGCGCG--GTCGTA-CCCGT-AGCGCATTGA------------CGTTGATCCTCG-CTACGCGGT---GTCCGGTCG Placopsis_santessonii_AY212826 GGGGCCCGACC---CTCCAT--CCCGTGCGTACCGACCCCACCGTTGCTTTGACGGGCCGCGGGGCCCCTTTGCGG-GGCCTCCCGTTGGCCTCGGCGGACGAGCGC-CCGTCAAGGA----CCTTTGATCAACCCATGTAAT--------CGTGCCGTCCGAG-------CCATGACAAAAATCA-ATCAAAACTTTCAACAACGGAT-CTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCCTGGCATTCCGGGGGGCATGCCTGTTCGAGCGTCATT--ACACCCCTCGAGCC----------TGGCTCG-GTGATGGGGGT-CGTC--------CAC--GGGG----CGCCCC-CGAAAAGCAGCGTGCGAAGCC--TCCGGA-CCGCTCGGCGAAGTACAACCTTTC-GTTC-CGCCGCG-GCGTCCGGGGAC---TCCCGCCGG Sarea_resinae_AY590792 GGGCCCGA------TCTCCCACCCTCTGTCTA-CCTACCTCATGTTGCTTTGGCGGGCCGCT------GGGCCTGGCCCACCGTCGGCTT------CGGCTG??GCG-CGCCCGCCAG--AGACCCCCTCAAACTCTTGTTT------ATCAGTGTCGTCTG--AGT--AC---TATGC-AAATAGTT--AAAACTTTCAACAACGGAT-CTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATT--ACACCACTCAAGC----------TCTGCTTG-GTATTGGGCCCTCGTC-------CTCCCGGGGA----CGTGCC-CGAAAATCAGTG-GCGGTGCC--GCCTGA--CTTCAAGCGCAGTAATTTCT-----CTCGCTTTGGAAGGAAGGGTCGGT--TGCCTGCCAG Schaereria_fuscocinerea_AF274090 GGGCCCGAACC---TCCCTC--CCTTTGCGAAC---CTCCCATGTTGCTTTGGCG--------GGCCTGCGGGGTC--ACCCGCCGCCGGCTTCGGCCGGTGAGCGC-CCGTCAGAGG-------CCCATAAACTCGAACACTG--------ATGACGTCGGAG-------TATCGTAACAA--TA-GTTAAAACTTTCAACAACGGAT-CTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAACCATCGAATCTTTGAACGCACATTGCGCCTCCTGGCATTCCGGGGGGCATGCCTGTTCGAGCGTCATT--ACACCCCTCAAGCT----------CGGCTTG-GTTATGGGCCCTCGTC--------CCC-CGGGA----CGTGCC-CGAAAGTTAGTG-GCGGTGCA--GCCCGA-CTTCG-AGCGTAGT-AACTTCAAA-CCCCGCTCCAGAAGTTTCGGGCGGT---GCCTGCCGG Schizoxylon_albescens_DQ401144 GGGGTGCACAA--CTCTCCACCCATTGCTT-GTTATTCTCA--GTTGCTTTGGCGGGTCGTGGC-------TCC----GGCC-CCGCTGGCTTAGGTTGGCGAGTAC-CTGCCAGAGA--TCACAACCA-AAACTCTTGAAG-TA--AAACTTTGAAGTCTGAAAA----AAACTATGGAAATAGCCT--AAAACTTTCAACAACGGAT-CTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTT-ACACCCCTCAAGC----------TAAGCTTG-GTATTGGGTGGTTGCC-TTC----CCGGGGGCAA---CTCCC---GAAATGTAGCG-GCGGTGCA--GCCAGA-CTCCCTAGCGCAGTGACTTTTCAA-TCTCGCTAACAAGGAGCTCGGTTGC-TTACTGGCCGG Siphula_georginae_DQ337608 GGGCCCAAA-----CCTCCCACCCTTGTGAAA-CATACCTA--GTTGCTTCGGCGGGTTT--------TGCCCCGGGACTTCCCCGG-----------GTCAGCCAT-CACCTGTCGG--TGGCCCTCCACAAATCATTTTC--T--AAACAGTGGTGTCTGC-AGT--GTATTAAAAT-AGTTGGCA--AAAACTTTCAACAACGGATTCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCAAATCTTTGAACGCACATTGCACCCTCCGGTATTCCGGGGGGTATGCCTGTTCGAGCGTCATT--ACACCCTTCAAGC----------TCAGCTTG-GTCATGGGCCT---TT-------CCCCTGAGGA-----GGGCC-TCAAAGTCAGTG-GCAGTGTC--TCCGGG--ACTCAGGCGTAGTAAAACTTC---TCCCGACTTGGAGCTCCCCG--CG----GCCGGCCAG Stictis_brunnescens_AY661688 GGGGCAACGAA--CTCTCCACCCCTTGCTTTGTCGTACCCACAGTTGCTTTGGCGGGTCGTGGC-------CCTTCGGGGCC-CCGTCGGCTTCGGCTGATGAGCAC-CCGCCGACAG--CCAAATTTA-AAAATCTTGAAG-TA--AACCT-TGAAGTCTGA-AAT--AAAAATATGAAAATAGCCT--AAAACTTTCAACAACGGAT-CTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTT-ACACCCCTCAAGC----------TCAGCT-G-GTATTGGGTGCCGTCCGTTCCCTTCCGGGGGGAGGA-TGCCCC-CGAAATGCAGCG--CGGTGCG--GCCGGG-CTCCCTAGCGCAGTGACTT-ACAA-TCTCGCTA-CAAGGAGCTCGCGTCCCGTTCCGGCCGG Trapeliopsis_steppicus_AF353574 GGGCCCGAACC---TCCCAC--CCCATGCGTATGTACCTCTG-GTTGCTTTGGCG--------GGCCGTGGGGCCCCGGCCCCCCGTCGACCCCGGTGGACGCGTGC-CCGTCAGAGC------CCCCATCAACCCCCGCG-TAC------CGTGACGTCCGAG-------CAGTGATTCAA-TCG-C-TAAAACTTTCAACAACGGAT-CTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCCTGGCATTCCGGGGGGCATGCCTGTCCGAGCGTCATT--ACACCCCTCGAGCC----------CGGCTCG-GTGTTGGGGGC-CGCC--------CCC-CGGGG----CGCCCC-CGAAAATCAGCG-GCGACGCG--GCCGGC-CCTCG-AGCGCAGTCAAACCTCGC-GTTC-CGCTGCGAGGCCCCGGGCGC---GTCCGCCGG ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 519; END; BEGIN TREES; Title ITS_Trees; LINK Taxa = ITS_Taxa; [!Parameters: ] TRANSLATE 1 Dictyocatenulata_alba_5358, 2 Dictyocatenulata_alba_5359, 3 Dictyocatenulata_alba_5360, 4 Dictyocatenulata_alba_8401, 5 Dictyocatenulata_alba_12918, 6 Aspicilia_berntii_EU502747, 7 Aspicilia_zonata_EU057951, 8 Baeomyces_rufus_AF448457, 9 Belonia_russula_HM244759, 10 Carestiella_socia_AY661682, 11 Conotrema_urceolatum_AY661686, 12 Cryptodiscus_microstomus_FJ904676, 13 Cryptodiscus_pini_HM244762, 14 Cryptodiscus_tabularum_FJ904690, 15 Dibaeis_baeomyces_DQ782844, 16 Diploschistes_diacapsis_AF228317, 17 Diploschistes_muscorum_AF228319, 18 Eurotium_herbariorum_AY373887, 19 Graphis_scripta_AF229195, 20 Megaspora_verrucosa_AF332122, 21 Neosartorya_stramenia_EF669984, 22 Ocellularia_interponenda_AJ508681, 23 Ocellularia_perforata_AJ508682, 24 Ochrolechia_parella_AF329174, 25 Ostropa_barbara_HM244773, 26 Pertusaria_albescens_AF329177, 27 Petractis_nodispora_FJ588710, 28 Placopsis_santessonii_AY212826, 29 Sarea_resinae_AY590792, 30 Schaereria_fuscocinerea_AF274090, 31 Schizoxylon_albescens_DQ401144, 32 Siphula_georginae_DQ337608, 33 Stictis_brunnescens_AY661688, 34 Trapeliopsis_steppicus_AF353574; TREE Default_symmetrical = (((((1,2),(3,4)),((5,6),(7,8))),(((9,10),(11,12)),((13,14),(15,(16,17))))),((((18,19),(20,21)),((22,23),(24,25))),(((26,27),(28,29)),((30,31),(32,(33,34)))))); TREE Default_bush = (1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34); TREE Default_ladder = (1,(2,(3,(4,(5,(6,(7,(8,(9,(10,(11,(12,(13,(14,(15,(16,(17,(18,(19,(20,(21,(22,(23,(24,(25,(26,(27,(28,(29,(30,(31,(32,(33,34))))))))))))))))))))))))))))))))); END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 519; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 519; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1329104455699; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 2405808739794684774; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 3321412841356006015; mqVersion 275; checksumv 0 3 1759925272 null getNumChars 519 numChars 519 getNumTaxa 34 numTaxa 34 short true bits 15 states 15 sumSquaresStatesOnly 312447.0 sumSquares 312447.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 700 500; setLocation 201 30; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #2405808739794684774 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.DefaultTrees.DefaultTrees; setAssignedID 832.1329104365288.5524099428146792483; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 600 433; setLocation 201 30; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 6; orientUp; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; toggleShow consensusFrequency; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;