#NEXUS [written Wed Dec 29 15:26:16 CST 2010 by Mesquite version 2.73 (build 544) at nate-uphams-macbook-pro.local/10.211.55.2] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=22; TAXLABELS 'Pedetes_capensis' 'Hystrix_brachyurus' 'Heterocephalus_glaber' 'Cavia_tschudii' 'Hydrochoerus_hydrochaeris' 'Dinomys_branickii' 'Erethizon_dorsatum' 'Dactylomys_boliviensis' 'Dactylomys_dactylinus' 'Echimys_chrysurus' 'Isothrix_barbarabrownae' 'Isothrix_bistriata' 'Isothrix_sinnamariensis' 'Makalata_didelphoides' 'Makalata_macrura' 'Toromys_grandis' 'Mesomys_hispidus' 'Mesomys_occultus' 'Proechimys_simonsi' 'Thrichomys_apereoides' 'Trinomys_iheringi' 'Myocastor_coypus' ; END; BEGIN CHARACTERS; TITLE 'Matrix in file "RAG1_21taxa_15octos.nex"'; DIMENSIONS NCHAR=1072; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX 'Pedetes_capensis' ????????GACTACCTGAATGGCCCCTTCACTGTGGTGGTGAAAGAGTCTTGCGATGGAATGGGAGATGTAAGCGAGAAGCACGGAAGTGGGCCAGCAGTTCCAGAAAAGGCAGTTCGTTTCTCCTTCACAGTCATGCAGATTATGATAGCGCGTGGCTCGCAGAGTGTGAAGGTGTTTGAGGAAGCCAAGCCTAACTCTGAACTGTGTTGCAAGCCTCTGTGCCTTATGCTGGCAGATGAGTCTGACCACGAGACCCTGACTGCCATCCTGAGTCCTCTCATTGCCGAGAGGGAGGCTATGAAGAGCAGTGAGCTAATGCTGGAGATGGGAGGCATCCTCAGGACTTTCAAGTTCATCTTTAGGGGTACTGGATATGATGAAAAACTCGTCCGGGAAGTGGAAGGCCTCGAGGCTTCCGGCTCCGTCTATATTTGTACACTTTGTGATGCCACCCGCCTGGAAGCCTCTCAGAACCTTGTCTTTCACTCCATAACTAGGAGCCATGCTGAGAACCTGGAACGCTATGAGGTCTGGCGTTCCAACCCGTACCACGAGTCAGTGGAAGAACTGCGGGATCGAGTGAAGGGGGTCTCGGCCAAACCTTTCATCGAGACAGTCCCTTCCATAGATGCACTCCACTGTGACATTGGCAATGCAGCTGAGTTCTACAAGCTGTTCCAGTTAGAGATAGGGGAGGTGTATAAAAATCCTAATGCCTCCAAAGAGGAAAGGAAAAGATGGCAGGCCACCCTGGACAAGCATCTT?GGAAGAAGATG?ACC????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? 'Hystrix_brachyurus' ????????GACTACCTAAACGGCCCCTTCACCGTGGTGGTCAAGGAGTCTTGTGACGGGATGGGGGACGTGAGTGAGAAGCACGGGAGTGGACCGGCTGTTCCTGAAAAGGCTGTTCGTTTTTCTTTCACAGTCATGAGAATTACCATAGC?CATGGCTCCCGGAATGTGCAGGTGTTCGAGGAAGCCAAGCCTAACTCTGAACTGTGTTGCAAGCCATTGTGCCTTATGCTGGCCGATGAGTCTGACCACGAGACCCTGACTGCCATCCTGAGCCCTCTCATTGCCGAGCGGGAGGCCATGAAGAGCAGTGAGTTACTGCTGGAGATGGGAGGCATCCTCAGGACCTTCAAGTTCATCTTCAGGGGCACCGGCTACGATGAAAAGCTTGTCCGGGAAGTGGAAGGCCTCGAAGCTTCTGGCTCAGTCTACATCTGTACTCTTTGCGATGCCACCCGCCTGGAAGCCTCTCAAAATCTTGTTTTCCACTCCATCACCAGGAGCCACACCGAGAACCTGGAGCGCTACGAGGTCTGGCGCTCCAACCCGTTCCACGAGTCGGTGGCAGAGCTGCGGGACCGAGTGAAAGGCGTCTCAGCGAAACCCTTCATCGAGACGGTCCCATCCATAGACGCGCTCCACTGTGACATCGGCAACGCAGCCGAGTTCTACAAGATTTTCCAGCTAGAGATCGGGGAGGTGTATAAAAACCCCAGTGCCTCCAAAGAGGAGAGGAAGAGATGGCAGGCCACACTGGACAAGCATCTCCGCAAGAAGATGAGC?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? 'Heterocephalus_glaber' ????????GACTACCTAAACGGCCCCTTCACTGTGGTGGTCAAGGAGTCTTGTGATGGGATGGGGGATGTGAGTGAGAAGCACGGGAGTGGACCAGCAGTTCCAGAAAAGGCAGTTCGTTTCTCATTCACGGTCATGAGAATTACCATAGCACATGGCTCCCAGAGTGTGAAGGTGTTTGAGGAAGCCAAGCCTAATTCTGAACTGTGTTGCAAGCCATTGTGCCTTATGCTGGCTGATGAGTCTGACCACGAGACCCTGACTGCCATCCTGAGTCCTCTTATCGCTGAGAGGGAGGCCATGAAGAGCAGTGAATTGCTGCTGGAGATGGGAGGCATCCTCAGGACCTTCAAGTTCCTCTTCAGGGGCACTGGCTATGATGAAAAACTTGTCCGGGAAGTGGAAGGCCTCGAAGCTTCTGGCTCAGTCTACATTTGTACTCTTTGTGATGCCACTCGCCTGGAAGCCTCTCAAAATCTTGTTTTCCACTCTATAACCAGAAGCCACACTGAGAACCTGGAGCGCTACGAGGTCTGGCGTTCCAACCCGTACCACGAGTCAGTGGAAGAGCTACGAGATCGAGTGAAAGGAGTCTCAGCCAAACCCTTCATTGAGACAGTCCCTTCCATAGATGCTCTCCACTGTGACATCGGCAATGCAGCTGAATTCTACAAGATTTTCCAGCTCGAGATAGGGGAGGTATACAAAAATTCCAATGCCTCCAAAGAGGAAAGGAAAAGATGGCAGGCCACACTGGACAAGCATCTCCGGAAGAAGATGAAC?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? 'Cavia_tschudii' ????????GATTACCTAAATGGTCCCTTCACAGTGGTGGTCAAAGAGTCTTGTGATGGGATGGGGGATGTGAGTGAGAAGCACGGGAGTGGACCAGCAGTTCCTGAAAAGGCAGTCCGTTTCTCATTCACAGTCATGAGAATTACTATAGCCCATGGCTCCCAGAACGTGAAGGTGTTTGAGGAAGCCAAACCTAACTCTGAACTGTGTTGCAAGCCATTGTGCCTTATGCTGGCCGATGAGTCTGATCACGAGACCCTGACTGCCATCCTGAGCCCTCTCATTGCAGAGAGGGAGGCCATGAAGAGCAGTGAATTACGGCTGGAGATGGGAGGCATCCTCAGGACCTTCAAGTTCCTCTTCAGGGGTACTGGCTATGATGAAAAACTTGTCCGGGAAGTGGAAGGCCTCGAGGCTTCTGGCTCTGTCTACATTTGCACTCTTTGTGATGCCACTCGTCTGGAAGCCTCTCAGAATCTTGTCTTCCACTCCATAACCAGAAGCCACACTGAGAACCTGGAGCGCTACGAGGTCTGGCGTTCCAACCCATACCATGAGTCAGTAGAAGAGCTACGAGATCGAGTGAAAGGAGTCTCAGCCAAACCTTTCATTGAGACAGTCCCTTCCATAGACGCGCTCCACTGTGACATTGGCAATGCAGCCGAATTCTACAAGATTTTCCAGCTAGAGATAGGGGAGGTGTATAAAAATCCCAACGCTTCCAGAGAGGAGAGGAAGAGATGGCAGGCCACCTTGGACAAGCATCTCCGAAAGAAAATGAAC?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? 'Hydrochoerus_hydrochaeris' ????????GACTACCTAAATGGCCCCTTCACGGTGGTGGTCAAGGAGTCATGTGATGGGATGGGGGACGTGAGTGAGAAGCATGGGAGTGGACCAGCAGTTCCCGAAAAGGCAGTCCGTTTCTCATTCACAATCATGAGAATTACTCTAGCGCATGGCTCCCAGAACGTGAAGGTGTTCGAGGAAGCCAAACCTAACTCTGAACTGTGTTGCAAGCCCTTGTGCCTTATGCTGGCCGACGAGTCCGATCACGAGACCCTGACTGCCATCCTGAGCCCTCTCATCGCAGAGAGGGAGGCCATGAAAAGCAGTGAATTACAGCTGGAGATGGGAGGTATCCTGAGGACCTTCAAATTCCTCTTCAGGGGCACCGGCTATGATGAAAAACTTGTCAGGGAAGTGGAAGGCCTTGAGGCTTCTGGCTCAGTCTACATTTGCACTCTTTGTGATGCCACCCGTTTGGAAGCCTCTCAGAATCTTGTCTTCCATTCCATAACCAGAAGCCACGCTGAGAACCTGGAACGCTACGAGGTCTGGCGTTCCAACCCGTACCACGAGTCAGTGGAAGAGCTACGGGATCGAGTGAAAGGAGTCTCAGCCAAACCTTTCATTGAGACAGTCCCTTCCATAGACGCGCTCCACTGTGACATTGGGAATGCAGCCGAATTCTACAAGATTTTCCAGCTGGAGATAGGGGAAGTGTATAAAAATCCCAACGCTTCCAGAGAGGAGAGGAAGAGATGGCAGGCCACCTTGGACAAGCATCTCAGAAAGAAGATGAAC?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? 'Dinomys_branickii' ???????????????TAAACGGCCCCTTCACGGTGGTGGTCAAGGAGTCTTGTGATGGGATGGGGGATGTGAGTGAGAAGCACGGGAGTGGACCTGCAGTGCCTGAAAAGGCTGTCCGGTTTTCATTCACCATCATGAGAATCTCCATAGCGCACAGCTCCCAGAA?GTGAAGGTGTTTGAGGAAGCCAAGCCTAACTCTGAACTGTGTTGCAAGCCATTGTGCCTTATGCTGGCCGACGAGTCCGACCATGAGACCCTGACTGCCATCCTGAGCCCCCTCATCGCCGAGAGGGAGGCCATGAAGAGCAGTGAATTACTGCTGGAGATGGGAGGCATCCTCAGGACCTTCAAGTTCCTCTTCAGGGGCACTGGTTATGACGAAAAGCTTGTCCGGGAAGTGGAAGGCCTCGAGGCTTCCGGCTCAGTCTACATTTGTACTCTTTGTGATGCCACTCGCCTGGAAGCTTCTCAAAATCTTGTCTTCCATTCCATAACCAGAAGCCACACCGAGAACCTGGAGCGCTATGAGGTCTGGCGTTCCAACCCGTACCATGAGTCAGTGGAGGAGCTACGGGATCGGGTGAAAGGGGTCTCAGCCAAACCTTTCATCGAGACGGTCCCTTCCATAGACGCGCTCCACTGTGACATCGGCAATGCAGCCGAATTCTACAAGATTTTCCAGCTAGAGATAGGGGAGGTGTATAAAAATCCCAACGCCTCCAAAGAGGAAAGGAAAAGATGGCAGGCCACCCTGGACAAGCATCTCCGAAA???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? 'Erethizon_dorsatum' ????????GACTACCTGAATGGCCCCTTCACGGTGGTGGTCAAGGAGTCTTGTGATGGGATGGGGGATGTGAGTGAGAAGCACGGGAGTGGACCAGCAGTTCCTGAAAAGGCAGTTCGTTTTTCATTCACAGTCATGAGAATTACCATAGTGCACGGCTCCCAGAACGTGAAGGTGTTTGAGGAAGCCAAGCCTAACTCTGAACTGTGTTGCAAGCCGTTGTGCCTTATGCTGGCCGATGAGTCTGATCACGAGACCCTGACTGCCATCCTGAGCCCTCTCATCGCCGAGAGGGAGGCCATGAAGAGCAGTGAATTACTGCTGGAGATGGGAGGCATCCTCAGGACCTTCAAGTTCCTCTTCAGGGGCACTGGCTATGATGAAAAACTTGTCCGGGAAGTGGAAGGCCTCGAGGCTTCTGGCTCAGTCTACATTTGTACTCTTTGTGATGCCACTCGCCTGGAAGCCTCTCAGAATCTTGTCTTCCACTCCATAACCAGAAGCCACACTGAGAACCTGGAGCGCTACGAGGTCTGGCGTTCCAACCCGTACCATGAGTCAGTGGAAGAGCTACGGGATCGAGTGAAAGGAGTCTCTGCCAAACCTTTCATTGAGACGGTCCCTTCCATTGACGCGCTCCACTGTGACATCGGCAATGCAGCAGAATTCTACAAGATTTTCCAGCTAGAGATAGGGGAGGTGTATAAAAATCCCAATGCCTCCAAAGAGGAAAGGAAAAGATGGCAGGCCACCTTGGACAAGCATCTCCGAAAGAAGATGAAC?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? 'Dactylomys_boliviensis' ACCTTGACGTCATCATCAACGGGCACTTCACGGTGGCGGTCAAGGAGGCTTGGGATGGGATGGGGGATGTCAGTGAGAAACATGGCAGCGGGCCTGCCGTTCCTGAAAAGGCAGTTCGCTTTTCATTCACCGTCATGAGAATTACCATAGCGCACAACTCCCAGAACGTGAAGGTGTTTGAGGAAGCCAAGCCTAACTCGGAACTGTGCTGCAAGCCACTGTGCCTTATGCTGGCSGATGAGTCCGACCACGAGACCCTGACTGCCATCCTCAGCCCGCTCATCGCCTACAGGGAAACCATGAAGAGCAGTGAGCTCCGGCTGGAGATGGGAGGCATCCCCAGGACCTTCAAGTTCCTCTTCAGGGGCACTGGCTATGATGAAAAACTCGTCCGGGAAGTGGAAGGCCTCGAGGCTTCTGGCTCAGTCTACATTTGCACGCTTTGTGATGCCACCCGCCTCGAAGCCTCTCAAAATCTTGTCTTCCACTCCATAACCAGAAGCCACATCGAGAACCTGGAGCGCTATGAGGTCTGGCGCTCCAACCCATACCATGAGTCAGTGGAAGAGCTACGGGATCGAGTGAAAGGGGTCTCGGCCAAACCATTTATCGAGACGGTCCCTTCCATAGACGCGCTGCACTGTGACATCGGCAATGCCGCCGAATTCTACAAGATTTTCCAGCTAGAGATAGGGGAGGTGTATAAGAACCCCAATGCATCCAAAGAAGAAAGGAAACGATGGCAGGCCACCTTGGACAAGCACCTCCGAAAGAAGATGAACCTGAAGCCGATCATGAGAATGAATGGCAACTTTGCCAGGAAGCTCATGACCAAAGAGACGGTGGAGGCGGTTTGTGAGTTGATTCCTTCCGCGGAGAGGCACGAAGCCCTCAGGGAGCTGATGGACCTTTATCTGAAGATGAAGCCCGTGTGGCGGTCCACATGCCCAGCCCAGGAGTGCGCAGACTCCCTCTGCCAGTACAGCTTCAACTCCCAGCGTTTCGCCGAGCTTCTGTCTACCAAGTTCAAGTACAGATACGAAGGCAAAATCACCAATTACTTTCACAAAAC 'Dactylomys_dactylinus' ACCTTGATGACTACCTCAACGGCCCCTTCATGGTGGTGGTCAAGGAGTCTTGTGATGGGATGGGGGATGTCAGTGAGAAACATGGCAGCGGGCCTGCCGTTCCTGAAAAGGCAGTTCGATTTTCATTCACCGTCATGAGAATTACCATAGCGCACAACTCCCAGAACGTGAAGGTGTTTGAGGAAGCCAAGCCTAACTCGGAACTGTGCTGCAAGCCACTGTGCCTTATGCTGGCTGATGAGTCCGACCATGAGACCCTGACTGCCATCCTCAGCCCGCTCATCGCCGAGAGGGAAGCCATGAAGAGCAGTGAGCTCCTGCTGGAGATGGGAGGCATCCCCAGGACCTTCAAGTTCCTCTTCAGGGGCACTGGCTATGATGAAAAACTTGTCCGGGAAGTGGAAGGCCTCGAGGCTTCTGGCTCAGTCTACATTTGCACGCTTTGTGATGCCACCCGCCTCGAAGCCTCTCAAAATCTTGTCTTCCACTCCATAACCAGAAGCCACACCGAGAACCTGGAGCGCTATGAGGTCTGGCGCTCCAACCCATACCATGAGTCAGTGGAAGAGCTACGGGATCGAGTGAAAGGGGTCTCGGCCAAACCATTTATCGAGACGGTCCCTTCCATAGACGCGCTGCACTGTGACATCGGCAATGCCGCCGAATTCTACAAGATTTTCCAGCTAGAGATAGGGGAGGTGTATAAGAACCCCAATGCATCCAAAGAAGAAAGGAAACGATGGCAGGCCACCTTGGACAAGCACCTCCGAAAGAAGATGAACCTGAAGCCGATCATGAGAATGAATGGCAACTTTGCCAGGAAGCTCATGACCAAAGAGACGGTGGAGGCGGTTTGTGAGTTGATTCCTTCCGCGGAGAGGCACGAAGCTCTCAGGGAACTGATGGACCTTTATCTGAAGATGAAGCCCGTGTGGCGGTCCACATGCCCAGCCCAGGAGTGCGCAGACTCCCTCTGCCAGTACAGCTTCAACTCCCAGCGTTTCGCCGAGCTTCTGTCTACCAAGTTCAAGTACAGATACGAAGGCAAAATCACCAATTACTTCAACAAAAC 'Echimys_chrysurus' ???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????GAGAGGGAAGCCATGAAGAGCAGYGAGCTCCTGCTGGAGATGGGAGGCATCCCCAGGACCTTCAAGTTCCTCTTCAGGGGCACKGGCTATGATGAAAAACTCGTCCGTGAAGTGGAAGGCCTCGAGGCTTCTGGCTCAGTCTACATTTGTACTCTTTGCGATGCCACCCGCCTCGAAGCCTCTCAAAATCTTGTCTTCCACTCCATAACCAGAAGCCACACCGAGAACCTGGAGCGCTATGAGGTCTGGCGCTCCAACCCATACCATGAGTCAGTGGAAGAGCTACGGGATCGAGTGAAAGGGGTCTCGGCCAAACCTTTCATCGAGACGGTCCCTTCCATAGACGCGCTGCACTGTGACATCGGCAATGCTGCCGAATTCTACAAGATTTTCCAGCTMGAGATAGGGGAGGTGTATAAGAACCCCAATGCTTCCAAAGAAGAAAGGAAAAGATGGCAGGCCACCTTGGACAAGCATCTCCGAAAGAAGATGAACCTGAAGCCGATTATGAGAATGAATGGCAACTTTGCCAGGAAGCTCATGACCAAAGAGACGGTGGAGGCGGTTTGTGAGTTGATACCTTCCATGGAGAGGCATGAAGCTCTCAGGGAGCTGATGGACCTTTACCTGAAGATGAAGCCTGTGTGGCGGTCCACATGCCCAGCTCAGGAGTGTGCAGACTCCCTCTACCAATACAGCTTCAATTCCCAGCGTTTCGCCGAGCTTCTCTCTACCAAGTTCAAGTACAGATACGAAGGCAAAATCACCAATTACTTTCACAAAAC 'Isothrix_barbarabrownae' ACCTTGATGACTACCTCAATGGCCCCTTCACCGTGGTGGTCAAGGAGTCTTGTGATGGGATGGGAGATGTGAGTGAGAAACACGGGAGTGGGCCTGCTGTTCCTGAAAAGGCAGTTCGTTTTTCATTCACCGTCATGAGAATTACCATAGCGCACAACTCCCAGAACGTGAAGGTGTTTGAGGAAGCCAAGCCTAACTCGGAACTGTGCTGCAAGCCACTGTGCCTTATGCTGGCCGATGAGTCCGACCACGAGACTCTGACTGCCATCCTCAGCCCGCTCATCGCCGAGAGGGAAGCCATGAAGAGCAGTGAGCTCCTGCTGGAGATGGGAGGCATTCCCAGGACCTTCAAGTTCCTCTTCAGAGGCACTGGCTATGATGAAAAACTTGTCCGAGAAGTGGAAGGCCTCGAGGCTTCTGGCTCCGTCTACATTTGTACTCTTTGTGATTCCACCCGCCTTGAAGCCTCTCAAAATCTTGTCTTCCACTCCATAACCAGAAGCCACACTGAGAACCTGGAGCGCTATGAGGTCTGGCGCTCCAACCCGTACCATGAGTCAGTGGAAGAGCTACGGGATCGAGTGAAAGGGGTCTCGGCCAAACCTTTCATCGAGACTGTCCCTTCCATAGACGCGCTGCACTGTGACATCGGCAATGCAGCCGAATTCTACAAGATTTTCCAGCTAGAGATAGGGGAGGTGTATAAGAACCCCAATGCTTCCAAAGAAGAAAGGAAAAGATGGCAGGCCACCTTGGACAAGCATCTCCGAAAGAAGATGAACCTGAAGCCGATCATGAGAATGAATGGCAACTTTGCCAGGAAGCTCATGACCAAAGAGACGGTGGAGGCGGTTTGTGAGTTGATTCCTTCCACCGAGAGGCATGAAGCTCTCAGGGAGCTGATGGACCTTTACCTGAAGATGAAGCCCGTGTGGCGGTCCACATGCCCAGCTCAGGAGTGTGCAGACTCCCTCTGCCAGTACAGCTTCAATTCCCAGCGTTTTGCCGAGCTTCTCTCTACCAAGTTCAAGTACAGATACGAAGGCAAAATCACCAATTACTTCCACAAAAC 'Isothrix_bistriata' ACCTTGATGACTACCTCAATGGCCCCTTCACCGTGGTGGTCAAGGAGTCTTGTGATGGGATGGGAGATGTGAGTGAGAAACACGGGAGCGGGCCTGCCGTTCCTGAAAAGGCAGTTCGTTTTTCATTCACCGTCATGAGAATTACCATAGCGCACAACTCCCAGAWCGTGAAGGTGTTTGAGGAAGCCAAGCCTAACTCGGAACTGTGCTGCAAGCCACTGTGCCTTATGCTGGCCGATGAGTCCGACCACGAGACYCTGACTGCCATCCTCAGCCCGCTCATCGCYGAGAGGGAAGCCATGAAGAGCAGYGAGCTCCTGCTGGAGATGGGAGGCATYCCCAGGACCTTCAAGTTCCTCTTCAGGGGCACTGGCTATGATGAAAAACTTGTCCGAGAAGTGGAAGGCCTCGAGGCTTCTGGCTCCGTCTACATTTGTACTCTTTGTGATGCCACCCGCCTTGAAGCCTCTCAAAATCTTGTCTTCCACTCCATAACCAGAAGCCACGCTGAGAACCTGGAGCGCTATGAGGTCTGGCGCTCCAACCCGTACCATGAGTCAGTGGAAGAGCTACGGGATCGAGTGAAAGGGGTCTCGGCCAAACCTTTCATCGAGACKGTCCCTTCCATAGACGCGCTGCACTGTGACATCGGCAATGCAGCYGAATTCTACAAGATTTTCCAGCTAGAGATAGGGGAGGTGTATAAGAACCCCAATGCTTCCAAAGAAGAAAGGAAAAGATGGCAGGCCACCTTGGACAAGCATCTCCGAAAGAAGATGAACCTGAAGCCGATCATGAGAATGAATGGCAACTTTGCCAGGAAGCTCATGACCAAAGAGACRGTGGAGGCGGTTTGTGAGTTGATTCCTTCCACCGAGAGGCATGAAGCTCTCAGGGAGCTGATGGACCTTTACCTGAAGATGAAGCCCGTGTGGCGGTCCACATGCCCAGCTCAGGAGTGCGCAGACTCCCTCTGCCAGTACAGCTTCAATTCCCAGCGTTTCGCCGAGCTTCTCTCTACCAAGTTCAAGTACAGATACGAAGGCAAAATCACCAATTACTTTCACAAAAC 'Isothrix_sinnamariensis' ACCTTGATGACTACCTCAATGGCCCCTTCACCGTGGTGGTCAAGGAGTCTTGTGATGGGATGGGAGATGTGAGTGAGAAACACGGGAGCGGGCCTGCCGTTCCTGAAAAGGCAGTTCGTTTTTCATTCACCGTCATGAGAATTACCATAGCGCACAACTCCCAGAACGTGAAGGTGTTTGAGGAAGCCAAGCCTAACTCGGAACTGTGCTGTAAGCCACTGTGCCTTATGCTGGCCGATGAGTCCGACCACGAGACCCTGACTGCCATCCTCAGCCCGCTCATCGCCGAGAGGGAAGCCATGAAGAGCAGTGAGCTCCTGCTGGAGATGGGAGGCATCCCCAGGACCTTCAAGTTCCTCTTCAGGGGCACTGGCTATGATGAAAAACTTGTCCGAGAAGTGGAAGGCCTCGAGGCTTCTGGCTCCGTCTACATTTGTACTCTTTGTGATGCCACCCGCCTTGAAGCCTCTCAAAATCTTGTCTTCCACTCCATAACCAGAAGCCACGCTGAGAACCTGGAGCGCTATGAGGTCTGGCGCTCCAACCCGTACCATGAGTCAGTGGAAGAGCTACGGGATCGAGTGAAAGGGGTCTCGGCCAAACCTTTCATCGAGACGGTCCCTTCCATAGACGCGCTGCACTGTGACATCGGCAATGCAGCCGAATTCTACAAGATTTTCCAGCTAGAGATAGGGGAGGTGTATAAGAACCCCAATGCTTCCAAAGAAGAAAGGAAAAGATGGCAGGCCACCTTGGACAAGCATCTCCGAAAGAAGATGAACCTGAAGCCGATCATGAGAATGAATGGCAACTTTGCCAGGAAGCTCATGACCAAAGAGACGGTGGAGGCGGTTTGTGAGTTGATTCCTTCTACCGAGAGGCATGAAGCTCTCAGGGAGCTGATGGACCTTTACCTGAAGATGAAGCCCGTGTGGCGGTCCACATGCCCAGCTCAGGAGTGCGCAGACTCCCTCTACCAGTACAGCTTCAATTCCCAGCGTTTCGCCGAGCTTCTCTCTACCAAGTTCAAGTACAGATACGAAGGCAAAATCACCAATTACTTTCACAAAAC 'Makalata_didelphoides' ACCTTGATGACTACCTCAATGGCCCCTTCACGGTGGTGGTCAAGGAGTCTTGTGATGGGATGGGAGATGTGAGTGAGAAACACGGGAGCTTACCTGCCGTTCCTGAAAAGGCAGTTCGTTTTTCATTCACCGACATGAGAATTACCATAGCGCACAACTCCCAGAACGTGAAGGTGTTTGAGGAAGCCAAGCCTAACTCGGAACTGTGCTGCAAGCCACTGTGCCTTATGCTGGCTGATGAATCCGACCACGAGACCCTGACTGCCATCCTAAGCCCACTCATCGCTGAGAGGGAAGCCATGAAGAGCAGCGAGCTCCTGCTGGAGATGGGAGGCATCCCCAGGACCTTCAAGTTCCTCTTCAGGGGCACTGGCTATGATGAAAAACTCGTCCGGGAAGTGGAAGGCCTTGAGGCTTCTGGCTCAGTCTACATTTGTACTCTTTGTGATGCCACCCGCCTTGAAGCCTCTCAAAATCTTGTATTCCACTCCATAACCAGAAGCCACACTGAGAACCTGGAGCGCTATGAGGTCTGGCGCTCCAACCCATACCATGAGTCAGTGGAAGAGCTACGGGATCGAGTGAAAGGGGTCTCGGCCAAACCTTTCATCGAGACGGTCCCTTCCATAGACGCGCTGCACTGTGACATCGGCAATGCGGCCGAATTCTACAAG?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? 'Makalata_macrura' ACCTTGATGACTACCTCAATGGCCCCTTCACGGTGGTGGTCAAGGAGTCTTGTGATGGGATGGGAGATGTGAGTGAGAAACACGGGAGCGGACCTGCCGTTCCTGAAAAGGCAGTTCGTTTTTCATTCACCGTCATGAGAATTACCATAGCGCACAACTCCCAGAACGTGAAGGTGTTTGAGGAAGCCAAGCCTAACTCGGAACTGTGCTGCAAGCCACTGTGCCTTATGCTGGCCGATGAGTCCGACCACGAGACCCTGACTGCCATCCTCAGCCCGCTCATCGCTGAGAGGGAAGCCATGAAGAGCAGYGAGCTCCTGTTGGAGATGGGAGGCATCCCCAGGACCTTCAAGTTCCTCTTCAGGGGCACTGGCTATGATGAAAAACTCGTCCGGGAAGTGGAAGGCCTTGAGGCTTCGGGCTCAGTCTACATTTGTACTCTTTGTGATGCCACCCGCCTTGAAGCCTCTCAAAATCTTGTATTCCACTCCATAACCAGAAGCCACACTGAGAACCTGGAGCGCTATGAGGTCTGGCGCTCCAACCCATACCATGAGTCAGTGGAAGAGCTACGGGATCGAGTGAAAGGGGTCTCGGCCAAACCTTTCATCGAGACGGTCCCTTCCATAGACGCGCTGCACTGTGACATMGGCAATGCCGCCGAATTCTACAAGATCTTCCAGCTMGAGATAGGGGAGGTGTATAAAAACCCCAATRCTTCCAAAGAAGAAAGGAAAAGATGGCAGGCCACCTTGGACAAGCATCTCCGAAAGAAGATGAACCTGAAGCCGATCATGAGAATGAATGGCAACTTTGCCAGGAAGCTCATGACCAAAGAGACGGTGGAGGCGGTTTGTGAGTTGATACCTTCCATGGAGAGGCACGAAGCTCTCAGGGAGCTGATGGACCTTTACCTGAAGATGAAGCCCGTGTGGCGGTCCACATGCCCAGCTCAGGAGTGCGCAGACTCCCTCTGCCAGTACAGCTTCAATTCCCAGCGTTTCGCCGAGCTTCTCTCTACCAAGTTCAAGTACAGATACGAAGGCAAAATCACCAATTACTTTCACAAAAC 'Toromys_grandis' ???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????GAGAGGGAAGCCATGAAGAGCAGCGAGCTCCTGCTGGAGATGGGAGGCATCCCCAGGACCTTCAAGTTCCTCTTCAGGGGCACTGGCTATGACGAAAAACTCGTCCGGGAAGTGGAAGGCCTCGAGGCTTCCGGCTCAGTCTACATTTGTACTCTTTGCGATGCCACCCGCCTCGAAGCCTCCCAAAATCTTGTCTTCCACTCCATAACCAGAAGCCACACTGAGAACTTGGAGCGCTATGAGGTCTGGCGCTCCAACCCGTACCATGAGTCAGTGGAGGAGCTGCGGGATCGAGTGAAAGGGGTCTCGGCCAAACCTTTCATCGAGACAGTTCCTTCCATAGATGCGCTGCACTGTGACATTGGCAATGCTGCGGAATTCTACAAGATCTTCCAGCTMGAGATAGGGGAGGTGTATAAAAACCCCAATGCTTCCAAAGAAGAAAGGAAAAGGTGGCAGGCCACCTTGGACAAGCATCTCCGAAAGAAGATGAACCTGAAGCCGATCATGACAATGAATGGCAACTTTGCCAGGAAGCTCATGACCAAAGAGACGGTGGAGGCGGTTTGTGAGTTGATACCTTCCACAGAGAGGCATGAAGCTCTCAGGGAGCTGATGGACCTTTACCTGAAGATGAAGCCTGTGTGGAGGTCCACATGCCCAGCTCAGGAGTGCGCAGACTCCCTCTGTCAGTACAGCTTCAATTCCCAGCGTTTCGCTGAGCTTCTCTCTACCAAGTTCAAGTACAGATACGAAGGCAAAATCACCAATTACTTTCACAAAAC 'Mesomys_hispidus' ????????????ACCTGAATGGCCCCTTCACGGTGGTGGTGAAGGAGTCTTGCGATGGGATGGGAGATGTGAGTGAGAAACACGGGAGCGGGCCTGCCGTTCCTGAAAAGGCTGTTCGTTTTTCGTTCACTGTCATGAAGATTACTATAGCGCACGGCTCACAGAACCTGAGAGTGTTTGAGGAAGCCAAGCCTAACTCGGAACTGTGTTGCAAGCCCCTGGGCCTTATGCTGGCCGATGAGTCCGACCACGAGACCCTGACTGCCATCCTCAGCCCGCTCATCGCTGAGAGGGAAGCCATGAAGAGCAGTGAGCTCCTGCTGGAGATGGGAGGCATCCCTAGGACCTTCAAGTTCCTCTTCAGGGGCACTGGCTATGATGAAAAACTTGTCCGGGAAGTGGAAGGTCTCGAGGCTTCTGGCTCAGTCTACATTTGTACTCTTTGTGATGCCACCCGCCTTGAAGCCTCTCAAAATCTTGTCTTCCACTCCATAACCAGAAGCCACACCGAGAACCTGGAGCGCTATGAGGTCTGGCGCTCCAACCCATACCATGAGTCAGTGGAAGAGCTACGGGATCGAGTGAAAGGGGTCTCGGCCAAACCTTTCATCGAGACGGTCCCTTCCATAGATGCGCTGCACTGTGACATCGGCAATGCAGCCGAATTCTACAAGATTTTCCAGCTAGAGATAGGGGAGGTGTATAAAAACCCCAATGCTTCCAAAGAAGAAAGGAAAAGATGGCAGGCCACCTTGGACAAGCATCTCCGAAAGAAGATGAACTTGAAGCCGATCATGAGAATGAATGGCAACTTTGCCAGGAAGCTCATGACCAAAGAGACGGTGGAGGCGGTTTGTGAGTTGATACCTTCCACGGAGAGGCATGAAGCTCTCAGGGAGCTGATGGACCTTTACCTGAAGATGAAGCCCGTGTGGCGGTCCACATGCCCAGCTCAGGAGTGCGCAGACTCCCTCTGCCAGTACAGCTTCAATTCCCAGCGTTTCGCCGAGCTTCTCTCTACCAAGTTCAAGTACAGATACGAAGGCAAAATCACCAATTACTTTCACAAAAC 'Mesomys_occultus' ACCTTGATGACTACCTCAATGGCCCCTTCACGGTGGTGGTCAAGGAGTCTTGTGATGGGATGGGAGATGTGAGTGAGAAACATGGGAGCGGGCCTGCTGTTCCTGAAAAGGCAGTTCGTTTTTCGTTCACTGTCATGAGAATTACCATAGCACACAACTCCCAGAACGTGAAGGTGTTTGAGGAAGCCAAGCCTAACTCGGAACTGTGCTGCAAGCCGCTGTGCCTTATGCTGGCCGATGAGTCCGACCACGAGACCCTGACTGCCATCCTCAGCCCGCTCATCGCTGAGAGGGAAGCCATGAAGAGCAGTGAGCTCCTGCTGGAGATGGGAGGCATYCCYAGGACCTTCAAGTTCCTTTTCAGGGGCACTGGCTATGATGAAAAACTTGTCCGGGAAGTGGAAGGCCTCGAGGCTTCTGGCTCAGTGTACATTTGTACTCTTTGTGATGCCACCCGCCTCGAAGCCTCTCAGAATCTTGTCTTCCACTCCATAACCAGAAGCCATGCCGAGAACCTGGAGCGCTATGAGGTCTGGCGCTCCAACCCATACCATGAGTCAGTGGAAGAGCTACGGGATCGAGTGAAAGGGGTCTCGGCCAAACCTTTCATYGAGACRGTCCCKTCCATAGACGCGCTGCACTGTGACATCGGCAATGCAGCCGAATTCTACAAGATTTTCCAGCTMGAGATAGGGGAGGTGTATAAAAACCCCAATGCTTCCAAAGAAGAAAGGAAAAGATGGCAGGCCACCTTGGACAAGCATCTCCGAAAGAAGATGAACTTGAAGCCGATCATGAGAATGAATGGCAACTTTGCCAGGAAGCTCATGACCAAAGAGACRGTGGAGGCGGTTTGTGAGTTGATACCTTCCACGGAGAGGCATGAAGCTCTCAGGGAGCTGATGGACCTTTACCTGAAGATGAAGCCCGTGTGGCGGTCCACATGCCCAGCTCAGGAGTGCGCAGACTCCCTCTGCCAGTACAGCTTCAATTCCCAGCGTTTCGCCGAGCTTCTCTCTACTAAGTTCAAGTACAGATACGAAGGCAAAATCACCAATTACTTTCACAAAAC 'Proechimys_simonsi' ACCTTGATGACTACCTCAACGGCCCCTTCACGGTGGTTGTCAAGGAGTCTTGTGATGGGATGGGAGATGTGAGTGAGAAACACGGGAGCGGGCCTGCCGTTCCTGAAAAGGCAGTTCGTTTTTCGTTCACCGTCATGAGAATTACCGTAGCGCACAACTCCCAGAACGTGAAGGTGTTTGAGGAAGCCAAGCCTAACTCGGAACTGTGCTGCAAGCCACTGTGCCTTATGCTGGCCGATGAGTCCGACCACGAGACCCTGACTGCCATCCTCAGCCCGCTCATCGCCGAGAGGGAAGCCATGAAGAGCAGTGAGCTCCTGCTGGAGATGGGAGGCATCCCCAGGACCTTCAAGTTCCTCTTCCGGGGCACTGGCTATGATGAAAAACTCGTCCGGGAAGTGGAAGGCCTCGAGGCTTCTGGCTCAGTCTACATTTGTACTCTTTGTGATGCCACCCGCCTTGAAGCGTCTCAAAATCTAGTCTTCCACTCCATAACCAGAAGCCACACTGAGAACCTGGAGCGCTACGAGGTCTGGCGCTCCAACCCATACCATGAGTCAGTGGAAGAGCTGCGGGATCGGGTGAAAGGGGTCTCGGCCAAACCTTTCATCGAGACGGTCCCTTCCATAGACGCGCTGCACTGTGACATCGGCAATGCAGCCGAATTCTACAAGATTTTCCAGCTCGAGATAGGGGAGGTGTATAAAAACCCTAATGCTTCCAAAGAAGAAAGGAAAAGATGGCAGGCCACCTTGGACAAGCATCTCCGAAAGAAGATGAACCTGAAGCCCATCATGAGAATGAATGGCAACTTTGCCAGGAAGCTCATGACCAAAGAGACAGTGGAGGCGGTTTGTGAGTTGATTCCTTCCACAGAGAGGCATGAAGCTCTCAGGGAGTTGATGGACCTTTACCTGAAGATGAAGCCCGTGTGGCGGTCCACATGCCCAGCTCAGGAGTGCGCAGAATCCCTCTGCCAGTACAGCTTCAACTCCCAGCGTTTCGCCGAGCTTCTCTCTACCAAGTTCAAGTACAGATACGAAGGTAAAATCACCAATTACTTTCACAAAAC 'Thrichomys_apereoides' ACCTTGAGGACTACCTCAATGGCCCCTTCACGGTGGTGGTCAAGGAGTCTTGTGACGGGATGGGAGACGTGAGTGAGAAACACGGGAGCGGGCCTGCCGTTCCTGAAAAGGCCGTTCGTTTTTCGTTCACCGTCATGAGAATTACCATAGCGCACAACTCCCAGAACGTGAAGGTGTTTGAGGAAGCCAAGCCTAACTCGGAACTGTGCTGCAAGCCACTGTGCCTTATGCTGGCTGATGAGTCCGACCACGAGACCCTGACTGCCATCCTCAGCCCGCTCATCGCCGAGAGGGAAGCCATGAAGAGCAGYGAGCTCCTGTTGGAGATGGGAGGCATCCCCAGGACYTTCAAGTTCCTCTTCAGGGGCACTGGCTATGACGAAAAACTCGTCCGGGAAGTGGAAGGCCTCGAGGCTTCTGGCTCAGTCTACATTTGTACTCTTTGTGACGCCACCCGCCTCGAAGCCTCTCAAAATCTTGTCTTCCATTCCATAACCAGAAGCCACACTGAGAACCTGGAGCGCTATGAGGTCTGGCGCTCCAACCCATACCATGAGTCAGTGGAAGAGCTGCGGGATCGAGTGAAAGGGGTCTCAGCCAAACCTTTCATCGAGACGGTCCCTTCCATAGACGCGCTGCACTGTGACATYGGCAATGCAGCYGAATTCTACAAGATTTTCCAGCTAGAGATAGGGGAGGTGTATAAAAACCCCAATGCTTCCAAAGAGGAAAGGAAAAGATGGCAGGCCACCTTGGACAAGCATCTCCGAAAGAAGATGAACCTGAAACCGATCATGAGAATGAAYGGCAACTTTGCCAGGAAGCTCATGACCAAAGAGACGGTGGAGGCGGTTTGTGAGTTGATTCCTTCCRCAGAGAGGCATGAAGCTCTCAGGGAGCTGATGGACCTTTACCTGAAGATGAAACCCGTGTGGCGGTCCACATGCCCAGCTCAGGAGTGCGCAGACTCCCTCTGCCAGTACAGCTTCAACTCCCAGCGTTTYGCCGAGCTTCTCTCTACCAAGTTCAAGTACAGATATGAAGGCAARATCACCAATTACTTTCACAAAAC 'Trinomys_iheringi' ACCTTGATGACTACCTCAATGGCCCCTTCACGGTGGTGGTCAAGGAGTCTTGTGATGGGATGGGAGATGTGAGTGAGAAACACGGGAGCGGGCCTGCCGTTCCTGAAAAGGCAGTTCGTTTTTCGTTCACCGTCATGAGAATTACCATAGCGCACAACTCCCAGAACGTAAAGGTGTTTGAGGAAGCCAAGCCTAACTCGGAGCTGTGCTGCAAGCCACTGTGCCTTATGCTGGCCGATGAGTCCGACCACGAGACCCTGACTGCCATCCTCAGCCCGCTCATCGCCGAGAGGGAAGCCATGAAGAGCAGCGAGCTCCTGCTGGAGATGGGAGGCATCCCCAGGACCTTCAAGTTCCTCTTCAGGGGCACTGGCTATGATGAAAAACTTGTCCGGGAAGTGGAAGGCCTCGAGGCTTCTGGCTCAGTCTACATTTGTACTCTTTGCGATGCCACTCGCCTGGAAGCCTCTCAAAATCTTGTCTTCCACTCCATAACCAGAAGCCACACTGAGAACCTGGAGCGCTACGAGGTTTGGCGCTCCAACCCATACCATGAGTCCGTGGAAGAGCTACGGGATCGAGTGAAAGGGGTCTCGGCCAAACCTTTCATCGAGACGGTCCCTTCCATAGACGCACTGCACTGTGACATTGGCAATGCAGCTGAATTCTACAAGATTTTCCAGCTAGAGATAGGGGAGGTGTATAAAAATCCCAATGCTTCCAAAGAAGAAAGGAAAAGATGGCAGGCCACCTTGGACAAGCATCTCCGAAAGAAGATGAACCTGAAGCCGATCATGAGAATGAATGGCAACTTTGCCAGGAAGCTCATGACCAAAGAGACAGTGGAGGCAGTTTGTGAGTTGATTCCTTCTACGGAGAGGCATGAAGCTCTCAGAGAGCTCATGGACCTGTACCTGAAGATGAAGCCTGTGTGGCGGTCCACATGCCCCGCGCAGGAGTGCGCAGACTCCCTCTGCCAGTACAGCTTCAATTCCCAGCGTTTCGCTGAGCTCCTCTCTACCAAGTTTAAGTACAGATATGAAGGCAAAATCACCAATTACTTTCACAAAAC 'Myocastor_coypus' ????????GATTACCTCAATGGCCCCTTCACGGTGGTGGTCAAGGAGTCTTGTGATGGGATGGGAGACGTGAGTGAGAAACACGGGAGTGGGCCTGCCGTTCCTGAAAAGGCGGTTCGTTTTTCGTTCACCGTCATGAGAATTACCATAGCGCACAACTCCCAGAACGTGAAGGTGTTTGAGGAAGCCAAGCCTAACTCGGAACTGTGCTGCAAGCCACTGTGCCTTATGCTGGCCGATGAGTCCGACCACGAGACCTTGACTGCCATCCTCAGCCCGCTCATCGCCGAGAGGGAAGCCATGAAGAGCAGTGAGCTCCTCTTGGACATGGGCGGCATCCCCAGGACCTTCAAGTTCCTCTTCAGGGGCACTGGCTATGATGAAAAACTCGTCCGGGAAGTGGAAGGCCTCGAGGCTTCTGGCTCAGTCTACATTTGTACTCTTTGTGATGCCACCCGCCTCGAAGCCTCTCAAAATCTTGTCTTCCACTCCATAACCAGAAGCCACACTGAGAACCTGGAGCGCTATGAGGTGTGGCGCTCCAACCCCTACCAGGAGTCAGTGGAAGAGCTACGCGATCGAGTGAAAGGCGTCTCGGCCAAACCTTTCATCGAGACGGTCCCTTCCATAGACGCGCTGCACTGTGACATCGGCAATGCAGCCGAATTCTACAAGATTTTCCAGCTAGAGATAGGGGAGGTGTATAAAAACCCCAATGCTTCCAAAGAAGAAAGGAAAAGATGGCAGGCCACCTTGGACAAGCATCTCCGAAAGAAGATGAAC?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 1072; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 1072; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 1072; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1293657977053; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 1603383328094167354; tell It; setDefaultOrder 17 8 6 0 7 3 5 1 2 4 9 10 11 12 13 20 14 15 18 19 21 16; attachments ; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 7753420521020496785; mqVersion 273; checksumv 0 2 3463139257 null getNumChars 1072 numChars 1072 getNumTaxa 22 numTaxa 22 short true bits 2305843009213693967 states 15 sumSquaresStatesOnly 390329.0 sumSquares -1.4757395258967635E20 NumFiles 1 NumMatrices 1 errorReportedDuringRun; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1398 753; setLocation 0 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #1603383328094167354 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #1603383328094167354; getWindow; tell It; newAssistant #mesquite.lists.DefaultTaxaOrder.DefaultTaxaOrder; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1298 686; setLocation 0 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.ibeam; endTell; setActive; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #7753420521020496785 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1298 686; setLocation 0 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;