#NEXUS [written Mon Feb 20 00:15:49 CET 2012 by Mesquite version 2.01 (build j28) at Carmelo-TOSH/192.168.1.132] BEGIN TAXA; TITLE HUWE1_Q_INSI_1_complete; DIMENSIONS NTAX=25; TAXLABELS TURQ52001_auropuntatum Calosoma_sycophanta_CALO25405 Carabus_clatratus_TURQ51901 Carabus_irregularis_ROMA94006 Carabus_morbillosus_MAZA5908 Carabus_morbillosus_TUNC1624 Carabus_morbillosus_TUNB1623 Carabus_morbillosus_TUNA1622 Carabus_rugosus_KSAR65807 Carabus_rugosus_SMAR43907 Carabus_auronitens_ROMA93906 Carabus_rutilans_SENY1548 Carabus_monilis_SAOU1538 Carabus_cancellatus_ROMA94106 Carabus_cancellatus_TACHcc816 Carabus_melancholicus_TIDI39104 Carabus_melancholicus_EALM42207 Carabus_melancholicus_ROBU37 Carabus_famini_MORR54807 Carabus_famini_EURY1625 Carabus_abbreviatus_TENE15007 Carabus_dufourii_ZUHE111 Carabus_lusitanicus_VESC5 Carabus_macrocephalus_FORO157 Carabus_riffensis_KETA569 ; END; BEGIN CHARACTERS; TITLE HUWE1_Q_INSI_1_complete; DIMENSIONS NCHAR=681; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX TURQ52001_auropuntatum GATATGGAGCTGGATGATACAGACGTAGCACCAAAGACCAGCACAAGTCCT-------GT--TGCGAACAACTGC--------AGCCAGAATGG-CACACGTAATATTGCTGTCGAAGGCCTCAGTGAAGAGTGCTGTGTGATAATCGTACGGACTTGCGTGAACCTGATGAAACTACCCATTGATCGAGACACACTGCATGCTGTGATGCGCATTTGCCTGAGACTCACACGTGATTTCCGCTGCGCCAGAATATTCGCAGAACAAGGAGGTGTCCGTTTGTTGTTGGAAATGACCCAAGCGTCATCCTTCACCGGATTTGTAACCCTGGCCACGTTGTTAATCCGTCACGTGATTGAAGAACCACAGACTCTATGTTTGGCCATCGAGAAGGTTATCCGAGGCCGTGCCTTGAACACAATCCCACCATCGCACAAAGAAATCTTATACTTGTTCAGGCAAGTCAGTTCAGCCGTTTGCCGTAATAGCGAAGCGTTCTTGGAAGTTTGCAAATCAATTTTGCGTATTGATATTAGCGCATTGCATAGACGAAGCAGTAAGT-ATTGATTTTATAGTTCT------------TTGTTTTT--TCTCAG----------------------TTTTATG-TTTCTTGTTTTCG-TAGATGATGAGGACGACAAACGTCTTCTG Calosoma_sycophanta_CALO25405 ???ATGGAGCTGGATGATCCAGATGTACCACCAACGATCACCATAAGTCCTGAACCAAGTCCCAGCAACAGCAGCGTGAACATAGCTGCAGCAGCCACACGTAACATTGCCGTCGAAGGTCTCAGTGAAGAGTGCTGTGTGATAATCGTACGGACTTGCGTGAACCTGATGAAACTACCCATTGATCGGGATACACTGCATGCTGTGATGCGTATTTGCCTGAGACTTACACGTGATTTCCGCTGCGCCAGAATATTCGCAGAACAAGGTGGTGTCCGTTTGTTGTTGGAAATGACCCAGGCGTCATCCTTCACCGGATTTGTAACCCTGGCCACGTTGTTGATCCGTCACGTGATTGAAGAACCACAGACCCTATGTTTGGCCATCGAGAAGGTTATCCGAGGCCGTGCCTTGAACACAATCCCGCCATCGCACAAAGAGATCTTATACTTGTTCAGACAAGTCAGTTCAGCCGTCTGCCGTAATCCCGAAGCGTTCTTGGAAGTTTGCAAATCAATTTTGCGCATTGACATTAGCGCTTTGCACAGACGAAGCAGTAAGT-ATTGATTTTATAGTTCT------------TTGTTTTTT-TTTCAA-TT---ATAGCAAGTGATTAA-TTCTATG-TTTCTTGTTTTCG-TAGATGAAGAGGATGACAAACGTCTTCTG Carabus_clatratus_TURQ51901 GATATGGAGCTGGACGATCCAGACGTAGCACCAAAAACCAGCACAAGTCCT-------GT--TGCGAACAGTACG--------GTACAGAACGG-TACACGTAACATTGCAGTCGAAGGCCTCAGTGAAGAGTGTTGTGTGATAATCGTACGGACCTGTGTGAACCTGATGAAGCTACCCATTGATAGAGACACACTGCATGCTGTGATGCGCATTTGTCTGAGACTCACACGTGATTTCCGCTGCGCCAGAATATTCGCCGAACAAGGTGGCGTCCGTTTGTTGTTGGAAATGACACAAGCATCGTCTTTTACCGGATTTGTAACCCTGGCCACATTGTTAATCCGTCACGTGATTGAGGAACCACAAACTCTATGTTTGGCCATCGAGAAGGTTATCCGAGGCCGTGCCTTGAACACAATACCACCATCGCACAAAGAGATCTTATACTTATTCAGACAAGTCAGTTCAGCCGTTTGCCGAAATCCCGAAGCATTCTTGGAGGTTTGCAAATCAATTTTGCGTATTGACATTAGCGCATTGCATAGACGAAGCAGTAAGT-ATTGA--------TTTT-------AG-AGTTATTTGTT-TGCCAG-TT---GTAGCAAGTGATTAA-TTTTATG-TT-----TTATAA-TAGATGAAGAGGACGACAAACGTCTTCTG Carabus_irregularis_ROMA94006 GATATGGAGCTGGACGATCCAGATGTAGCACCGAAAACCAGCACAAGTCCG-------GT--TGCGAACAGTTGC--------AACCAGAACGG-TACACGTAACATTGCCGTCGAAGGCCTCAGTGAAGAGTGTTGTGTGATAATCGTACGGACCTGTGTGAACCTGATTAAGTTACCCATTGACAGAGACACACTGCACGCTGTGATGCGCATTTGCCTGAGACTCACACGTGATTTCCGCTGCGCCAGAATATTCGCAGAACAAGGTGGCGTCCGTTTGTTGTTGGAAATGACACAAGCATCGTCTTTTACCGGATTTGTAACGCTGGCCACATTGTTAATCCGTCACGTGATTGAAGAACCTCAGACTCTATGTTTGGCCATCGAGAAGGTTATCCGAGGCCGTGCCTTGAACACAATACCACCATCGCACAAGGAAATCTTGTACTTGTTCAGACAAGTCAGTTCAGCCGTTTGCCGAAATCCCGAAGCGTTCTTGGAGGTTTGCAAATCAATCTTGCGTATTGACATTAGCGCATTGCATAGACGAAGCAGTAAGT-ATTGA--------TTTT-------AT-AGTTATTTGTT-TGCCAG-TT---GTAGCATTTGATTAA-ATTTATG-TT-----TTATAA-TAGATGAAGAGGACGATAAACGTCTTCTG Carabus_morbillosus_MAZA5908 GATATGGAACTGGATGATCCAGATGTAGCACCGAAAACCAGCACAATTCCT-------GT--TGCGACCAGCGGC--------AACCAGAATGG-TACACGTAACATTGCTGTGGAAGGTCTCAGTGAAGAGTGTTGTGTGATAATCGTACGGACCTGTGTGAACCTGATGAAATTACCCATTGATAGAGACACACTGCACGCTGTGATGCGCATTTGTCTGCGACTGACACGTGATTTCCGTTGCGCTAGAATTTTCGCAGAACAAGGTGGCGTCCGTTTGTTGCTGGAAATGACTCAAGCATCGTCTTTTACCGGTTTTGTAACACTGGCTACATTATTAATCCGTCACGTGATTGAAGAACCACAGACTCTATGTTTGGCCATCGAGAAGGTTATCCGAGGACGTGCCTTGAATACAATACCACCATCGCACAAGGAAATCTTGTACTTGTTCAGACAAGTCAGTTCAGCTGTTTGCCGAAATCCCGAAGCGTTCTTGGAGGTTTGCAAATCAATTTTGCGTATTGACATTAGCGCATTGCATAGACGAAGCAGTAAGT-A----------TTTTTT-------AT-AGTTACTTGTT-TGCCAA-TT---GTAGCAAGTGTTTAA-TTTTATG-TT-----TTATAA-TAGATGAAGAGGACGATAAACGTCTTCTG Carabus_morbillosus_TUNC1624 ???????????????????????????????????????????????????????????????????????????????????????????????????????????????GTGGAAGGTCTCAGTGAAGAGTGTTGTGTGATAATCGTACGGACCTGTGTGAACCTGATGAAATTACCCATTGATAGAGACACACTGCACGCTGTGATGCGCATTTGTCTGCGACTGACACGTGATTTCCGTTGCGCTAGAATTTTCGCAGAACAAGGTGGTGTCCGTTTGTTGCTGGAAATGACTCAAGCATCGTCTTTTACCGGTTTTGTAACACTGGCTACATTATTAATCCGTCACGTGATTGAAGAACCACAGACTCTATGTTTAGCCATCGAGAAGGTTATCCGAGGACGTGCCTTGAATACAATACCACCATCGCACAAGGAAATCTTGTACTTGTTCAGACAAGTCAGTTCAGCTGTTTGCCGAAATCCCGAAGCGTTCTTGGAGGTTTGCAAATCAATTTTGCGTATTGACATTAGCGCATTGCATAGACGAAGCAGTAAGT-A---------TTTTTTT-------AT-AGTTATTTGTT-TGCCAA-TT---GTAGCAAGTGTTTAA-TTTTATG-TT-----TTATAA-TAGATGAAGAGGACGATAAACGTCTTCTG Carabus_morbillosus_TUNB1623 GATATGGAACTGGATGATCCAGATGTAGCACCGAAAACCAGCACAATTCCT-------GT--TGCGACCACCGGC--------AACCAGAATGG-TACACGTAACATTGCTGTGGAAGGTCTCAGTGAAGAGTGTTGTGTGATCATCGTACGGACCTGTGTGAACCTGATGAAATTACCCATTGATAGAGACACACTGCACGCTGTGATGCGCATTTGTCTGCGACTGACACGTGATTTCCGTTGCGCTAGAATTTTCGCAGAACAAGGTGGTGTCCGTTTGTTGCTGGAAATGACTCAAGCATCGTCTTTTACCGGTTTTGTAACACTGGCTACATTATTAATCCGTCACGTGATTGAAGAACCACAGACTCTATGTTTAGCCATCGAGAAGGTTATCCGAGGACGTGCCTTGAATACAATACCACCATCGCACAAGGAAATCTTGTACTTGTTCAGACAAGTCAGTTCAGCTGTTTGCCGAAATCCCGAAGCGTTCTTGGAGGTTTGCAAATCAATTTTGCGTATTGACATTAGCGCATTGCATAGACGAAGCAGTAAGT-A----------TTTTTT-------AT-AGTTATTTGTT-TGCCAA-TT---GTAGCAAGTGTTTAATTTTTATG-TT-----TTATAA-TAGATGAAGAGGACGATAAACGTCTTCTG Carabus_morbillosus_TUNA1622 GATATGGAACTGGATGATCCAGATGTACCACCGAAAACCAGCACAATTCCT-------GT--TGCGACCACCGGC--------AACCAGAATGG-TACACGTAACATTGCTGTGGAAGGTCTCAGTGAAGAGTGTTGTGTGATCATCGTACGGACCTGTGTGAACCTGATGAAATTACCCATTGATAGAGACACACTGCACGCTGTGATGCGCATTTGTCTGCGACTGACACGTGATTTCCGTTGCGCTAGAATTTTCGCAGAACAAGGTGGCGTTCGTTTGTTGCTGGAAATGACTCAAGCATCGTCTTTTACCGGTTTTGTAACACTGGCTACATTATTAATCCGTCACGTGATTGAAGAACCACAGACTCTATGTTTAGCCATCGAGAAGGTTATCCGAGGACGTGCCTTGAATACAATACCACCATCGCACAAGGAAATCTTGTACTTGTTCAGACAAGTCAGTTCAGCTGTCTGCCGAAATCCCGAAGCGTTCTTGGAGGTTTGCAAATCAATTTTGCGTATTGACATTAGCGCATTGCATAGACGAAGCAGTAAGT-A------------TTTT-------TT-AGTTATTTGTT-TGCGAA-TT---GTAGCAAGTGTTTAA-TTTTATG-TT-----TTATAA-TAGATGAAGAGGACGATAAACG-CTTCTG Carabus_rugosus_KSAR65807 GATATGGAACTGGACGATCCAGATGTAGCACCGAAAACCAGCACAAGCCCT-------GT--TGCGAACAGCGGC--------AACCAGAACGG-TACACGTAACATTGCTGTGGAAGGTCTCAGTGAAGAGTGTTGTGTGATAATCGTACGGACCTGTGTGAACCTGATGAAGTTACCAATTGATAGAGACACACTGCACGCTGTGATGCGCATTTGCCTGCGACTGACACGTGATTTCCGTTGCGCTAGAATATTCGCAGAACAAGGTGGCGTCCGTTTGTTGCTGGAAATGACCCAAGCATCGTCTTTTACCGGTTTTGTAACACTGGCTACATTATTAATCCGTCACGTGATTGAAGAACCACAGACTCTATGTTTGGCCATCGAGAAGGTTATCCGAGGACGTGCCTTGAATACAATACCACCATCGCACAAGGAAATCTTGTACTTGTTCAGACAAGTCAGTTCAGCTGTTTGCCGAAATCCCGAAGCGTTCTTGGAGGTTTGCAAATCAATTTTGCGCATTGACATAAGCGCATTGCATAGACGAAGCAGTAAGT-A---------TTTGTTT-------AT-AGTTATTTGTT-TGCCAA-AT---GTAGCAAGTGTTTAA-TTTTATG-TT-----TTATAA-TAGATGAAGAGGACGATAAACGTCTTCTG Carabus_rugosus_SMAR43907 GATATGGAACTGGACGATCCAGATGTAGCACCGAAAACCAGCACAAGCCCT-------GT--TGCGAACAGCGGC--------AACCAGAATGG-TACACGTAACATTGCTGTGGAAGGTCTCAGTGAAGAGTGTTGTGTGATAATCGTACGGACCTGTGTGAACCTGATGAAGTTACCAATTGATAGAGACACACTGCACGCTGTGATGCGCATTTGCCTGCGACTGACACGTGATTTCCGTTGCGCTAGAATATTCGCAGAACAAGGTGGCGTCCGTTTGTTGCTGGAAATGACCCAAGCATCGTCTTTTACCGGTTTTGTAACACTGGCTACATTATTAATCCGTCACGTGATTGAAGAACCACAGACTCTATGTTTGGCCATCGAGAAGGTTATCCGAGGACGTGCCTTGAATACAATACCACCATCGCACAAGGAAATCTTGTACTTGTTCAGACAAGTCAGTTCAGCTGTTTGCCGAAATCCCGAAGCGTTCTTGGAGGTTTGCAAATCAATTTTGCGCATTGACATAAGCGCATTGCATAGACGAAGCAGTAAGT-A---------TTTGTTT-------AT-AGTTATTTGTT-TGCCAA-AT---GTAGCAAGTGTTTAA-TTTTATG-TT-----TTATAA-TAGATGAAGAGGACGATAAACGTCTTCTG Carabus_auronitens_ROMA93906 GATATGGAACTGGACGATCCAGATGTAGCACCGAAAACCAGCACAAGTCCT-------GT--TGCGAACAGCGGC--------AACCAGAACGG-TACACGTAACATTGCTGTGGAAGGTCTCAGTGAAGAGTGTTGTGTGATAATCGTACGGACCTGTGTGAACCTGATGAAGTTACCAATTGATAGAGACACACTGCACGCTGTGATGCGCATTTGTCTGCGACTGACACGTGATTTCCGTTGCGCTAGAATATTCGCAGAACAAGGTGGTGTCCGTTTGTTGCTGGAAATGACCCAAGCATCGTCTTTTACCGGTTTTGTAACACTGGCTACATTGTTAATCCGTCACGTGATTGAAGAACCACAGACTCTATGTTTGGCCATCGAGAAGGTTATACGAGGACGTGCCTTGAATACAATACCACCATCGCACAAGGAAATCTTGTACTTGTTCAGACAAGTCAGTTCAGCTGTTTGCCGAAATCCCGAAGCGTTCTTGGAGGTTTGCAAATCAATTTTGCGTATTGACATTAGCGCATTGCATAGACGAAGCAGTAAGT-A-----TTT-TTTTTTT-------AT-AGTTATTTGTT-TGCCAA-TT---GTAGCAAGTGATTAA-TTTGATG-TT-----TTATAA-TAGATGAAGAGGACGATAAACGTCTTCTG Carabus_rutilans_SENY1548 GATATGGAACTGGACGATCCAGATGTAGCACCGAAAACCAGCACAAGTCCT-------GT--TGCGAACAGCGGC--------AACCAGAACAG-TACACGTAACATTGCTGTGGAAGGTCTCAGTGAAGAGTGTTGCGTGATAATCGTACGCACCTGTGTGAACTTGATGAAGTTACCAATTGATAGAGACACACTGCACGCTGTGATGCGCATTTGTCTGCGACTGACACGTGATTTCCGTTGCGCTAGAATATTCGCAGAACAAGGTGGCGTCCGTTTGTTGCTGGAAATGACCCAAGCATCGTCTTTTACCGGTTTTGTAACACTGGCTACATTGTTAATCCGTCACGTGATTGAAGAACCACAGACTCTGTGTTTGGCCATCGAGAAGGTTATCCGAGGACGTGCCTTAAATACAATACCACCATCGCACAAGGAAATCTTGTACTTATTCAGACAAGTCAGTTCAGCTGTTTGCCGAAATCCCGAAGCGTTCTTGGAGGTTTGCAAATCAATTTTGCGTATTGACATTAGCGCATTGCATAGACGAAGCAGTAAGT-A-------T-TTCTTTT-------AT-AGTTATTTGTT-TGCCAA-TG---GTAGCAAGTGATTAA-TTTGATG-TT-----TTATAA-TAGATGAAGAGGACGATAAACGTCTTCTG Carabus_monilis_SAOU1538 GATATGGAGCTGGACGACCCTGATGTAGCACCGAAAACCAGCACAAGTCCG-------GT--TGCGAACAGCGGC--------AACCAGAACGG-TACACGTAACATTGCTGTGGAAGGTCTCAGTGAAGAGTGTTGTGTGATTATCGTACGGACCTGCGTGAACCTGATGAAGTTACCGATTGATCGAGACACATTGCACGCTGTGATGCGCATTTGTCTGCGACTGACACGTGATTTCCGTTGCGCTAGAATATTCGCAGAGCAGGGTGGCGTTCGTTTGTTACTGGAAATGACCCAAGCATCTTCATTTACCGGTTTTGTCACACTGGCTACATTGTTAATCCGTCACGTGATTGAAGAACCACAGACTCTATGTTTGGCCATCGAGAAGGTTATCCGAGGACGTGCCTTGAATACAATACCACCATCGCACAAAGAAATCTTGTACTTGTTCAGACAAGTCAGTTCAGCTGTTTGCCGAAATCCCGAAGCGTTCTTGGAGGTTTGCAAATCAATTTTGCGTATTGATATTAGCGCATTGCACAGAAGAAGCAGTAAGT-ATTGATTTTGTTGTTTT-------ATAAGTTATTTGTT-TGCCAGTTT---ATAGCAAGTGATTAA-ATT---GTTT-----TATAAA-TAGATGAAGAGGACGATAAACGTCTTCTG Carabus_cancellatus_ROMA94106 GATATGGAGCTGGACGATCCTGAAGTAGCACCGAAAACCAGCACAAGTCCT-------GT--TGCAACCAGTGGC--------AACCAGAATGG-TACACGTAACATTGCTGTTGAAGGTCTCAGTGAAGAGTGTTGTGTGATAATCGTACGGACCTGTGTGAACCTGATGAAATTACCCATTGATCGAGACACGCTGCACGCGGTGATGCGTATTTGTCTGCGACTTACACGTGATTTCCGTTGCGCCAGAATATTCGCAGAACAAGGTGGCGTTCGTTTGTTGCTGGAAATGACCCAAGCATCTTCTTTTACCGGTTTTGTAACACTGGCTACATTGTTAATCCGCCACGTAATTGAAGAACCGCAGACTCTATGTTTGGCCATCGAGAAGGTTATCCGTGGCCGTGCCTTGAACACAATACCACCATCGCACAAAGAAATCTTGTACTTGTTCAGACAAGTCAGTTCAGCTGTTTGCCGAAATCCCGAAGCGTTCTTGGAGGTTTGCAAATCAATTTTGCGTATTGACATTAGCGCATTGCATAGACGAAGCAGTAAGTTATTGATTTG-TTGTTT-----------------------TGTCAA-TT---GTAGCAAGTGATTAA-TTCTATGTTT-----TTATAA-TAGATGAAGAGGACGACAAACGTCTTCTG Carabus_cancellatus_TACHcc816 GATATGGAGCTGGACGATCCAGACATGCCACCAAAATCCAGTACGAGTCCA-------GT--TGCGAACAGTTTC--------AATCCGAACTG-TACACGTAACATTGCTGTGGAAGGTCTCAGTGAAGAGTGTTGTGTGATCATCGTACGGACCTGTGTGAACCTGATGAAGTTACCCATTGATCGAGACACATTGCATGCTGTGATGCGTATTTGTCTGCGACTCACACGGGATTTCCGCTGTGCTAGAATATTTGCAGAACAAGGTGGCGTCCGTTTGTTGTTGGAAATGACCCAAGCATCGTCTTTCACCGGATTTGTGACACTGGCCACATTGTTGATCCGTCACGTGATTGAAGAACCCCAAACACTATGTTTAGCCATCGAAAAGGTTATCCGAGGTCGCGCCTTAAACACAATACCACCATCGCACAAGGAAATCTTGTACTTGTTCAGACAAGTCAGTTCAGCTGTTTGCCGAAATCCCGATGCATTCTTGGAGGTTTGCAGAGCAATCTTGCGTATTGACATTAGCGCATTGCATAGACGTAGCAGTAAGT-ATTGATTTTGTTTGTTTGTTTTATAT-TGTTATTTGTTTTGCCAG-TT---GTAACAAGTGATTAA-TTTTATG-TG-----TTATAATTAGATGAAGAGGATGACAAACGTCTTCTG Carabus_melancholicus_TIDI39104 GATATGGAGCTGGACGATCCGGACGTGCCACCAAAAACCAGTACAAGTCCT-------GT--TGCGAACAGTTGC--------AACCAGAACGG-TACACGTAACATTGCTGTCGAAGGTCTCAGTGAAGAGTGTTGTGTGATAATCGTACGGACCTGTGTGAACCTGATGAAGCTACCCATTGATAGAGACACACTGCATGCTGTGATGCGTATTTGTCTGCGACTCACACGTGATTTCCGTTGCGCTAGAATATTCGCAGAACAAGGTGGTGTGCGTTTGTTGTTGGAAATGACACAAGCATCGTCTTTTACCGGTTTTGTAACACTGGCTACATTGTTAATCCGTCACGTGATTGAAGAACCACAGACTCTGTGTTTAGCCATCGAGAAGGTTATTCGCGGCCGTGCCTTGAACACAATACCACCATCGCACAAAGAAATCTTGTACTTGTTCAGACAAGTCAGTTCAGCTGTTTGCCGAAATCCCGAAGCGTTCTTGGAGGTTTGCAAATCAATCTTGCGTATTGACATTAGCGCATTGCATAGACGAAGCAGTAAGT-ATTGATTTT-TTGTTTT-------AC-AGTTATTTGTT-TGCCAA-TT---GTAGCAAGTGATTAA-TTTTATA-TT-----TTATGA-TAGATGAAGAAGACGACAAACGTCTTCTG Carabus_melancholicus_EALM42207 GATATGGAGCTGGACGATCCGGACGTGCCACCAAAAACCAGCACAAGTCCT-------GT--TGCGAACAGTTGC--------AACCAGAACGG-TACACGTAACATTGCTGTCGAAGGTCTCAGTGAAGAGTGTTGTGTGATAATCGTACGGACCTGTGTGAACCTGATGAAGCTACCCATTGATAGAGACACACTGCATGCTGTGATGCGTATTTGTCTGCGACTCACACGTGATTTCCGTTGCGCTAGAATATTCGCAGAACAAGGTGGTGTGCGTTTGTTGTTGGAAATGACACAAGCATCGTCTTTTACCGGTTTTGTAACACTGGCTACATTGTTAATCCGTCACGTGATTGAAGAACCACAGACTCTGTGTTTAGCCATCGAGAAGGTTATTCGCGGCCGTGCCTTGAACACAATACCACCATCGCACAAAGAAATCTTGTACTTGTTCAGACAAGTCAGTTCAGCTGTTTGCCGAAATCCCGAAGCGTTCTTGGAGGTTTGCAAATCAATCTTGCGTATTGACATTAGCGCATTGCATAGACGAAGCAGTAAGT-ATTGATTTT-TTGTTTT-------AC-AGTTATTTGTT-TGCCAA-TT---GTAGCAAGTGATTAA-TTTTATA-TT-----TTATGA-TAGATGAAGAAGACGACAAACGTCTTCTG Carabus_melancholicus_ROBU37 GATATGGAGCTGGACGATCCGGACGTGCCACCAAAAACCAGCACAAGTCCT-------GT--TGCGAACAGTTGC--------AACCAGAACGG-TACACGTAACATTGCTGTCGAAGGTCTCAGTGAAGAGTGTTGTGTGATAATCGTACGGACCTGTGTGAACCTGATGAAGCTACCCATTGATAGAGACACACTGCATGCTGTGATGCGTATTTGTCTGCGACTTACACGTGATTTCCGTTGCGCTAGAATATTCGCAGAACAAGGTGGTGTGCGTTTGTTGTTGGAAATGACACAAGCGTCGTCTTTTACCGGTTTTGTAACACTGGCTACATTGTTAATCCGTCATGTGATTGAAGAACCACAGACTCTGTGTTTAGCCATCGAGAAGGTTATCCGCGGCCGTGCCTTGAACACAATACCACCATCGCACAAAGAAATCTTGTACTTGTTCAGACAAGTCAGTTCAGCTGTTTGCCGAAATCCCGAAGCGTTCTTGGAGGTTTGCAAATCAATCTTGCGTATTGACATTAGCGCATTGCATAGACGAAGCAGTAAGT-ATTGATTTT-TTGTTTT-------AC-AGTTATTTGTT-TGCCAA-TT---ATAGCAAGTGATTAA-TTTTATA-TT-----TTATGA-TAGATGAAGAGGACGACAAACGTCTTCTG Carabus_famini_MORR54807 GATATGGAGCTGGACGATCCAGATGTGCCACCAAAAACCAGCACAAGTCCT-------GT--TGCAACCACTCTC--------AACCAGAACGG-TACACGTAACATTGCTGTCGAAGGTCTCAGTGAAGAGTGTTGTGTGATAATCGTACGGACCTGTGTGAACCTGATGAAACTACCCATTGATAGAGACACACTGCATGCTGTGATGCGCATTTGTCTGCGACTCACACGTGATTTCCGCTGCGCCAGAATATTCGCAGAACAAGGTGGCGTCCGTTTGTTGTTGGAAATGACGCAAGCATCGTCTTTTACCGGATTTGTAACCCTGGCTACATTGTTAATCCGTCACGTGATTGAAGAACCACAAACTCTGTGTTTGGCCATCGAGAAGGTAATCCGAGGCCGTGCCTTGAACACAATACCACCATCACACAAAGAAATCCTGTACTTGTTCCGACAAGTCAGTTCAGCTGTTTGCCGAAATCCTGAAGCGTTCTTGGAGGTTTGCAAATCAATCTTGCGTATTGATATTAGCGCATTGCATAGACGAAGCAGTAAGT-ATTGATTTT-CTGTTTT-------AT-AGTTATTTGTT-TGCCTG-TT---GTAGTAAGTGATTAA-TTTTATG-TT-----TTRTAA-TAGATGAAGAGGACGACAAACGTCTTCTG Carabus_famini_EURY1625 ?????????????????????????????????????????????????????????????????????????????????????????????????????????????????CGAAGGTCTCAGTGAAGAGTGTTGTGTGATAATCGTACGGACCTGTGTGAACCTGATGAAACTACCCATTGATCGAGACACACTTCACGCTGTGATGCGCATTTGTCTGCGACTCACACGTGATTTCCGCTGCGCCAGAATATTCGCAGAACAAGGAGGCGTCCGTTTGTTGTTGGAAATGACGCAAGCATCGTCATTCACCGGATTCGTAACCCTGGCTACATTGTTAATCCGTCACGTGATTGAAGAACCACAAACTCTGTGTTTGGCCATCGAGAAGGTAATCCGAGGCCGTGCCTTGAACACAATTCCACCATCACACAAAGAAATCCTGTACTTGTTCCGACAAGTCAGTTCAGCTGTTTGCCGAAATCCTGAAGCGTTCTTGGAGGTTTGCAAATCAATCTTGCGTATTGATATTACCGCTTTACATAGACGAAGCAGTAAGT-ATTGGTTTT-CTGTTTT-------AT-AGTTATTTGTT-TGCCTG-TT---GTAGCAAGTGATTAA-TTTTATG-TT-----TTGTAA-TAGATGAGGAGGACGACAAACGTCTTCTG Carabus_abbreviatus_TENE15007 GATATGGAGCTGGACGATCCAGATGTGCCACCAAAAACCAGCACCAGTCCT-------GT--TGCAAACACTTGC--------AACCAGAACGG-TACACGTAACATTGCTGTCGAAGGTCTCAGTGAAGAGTGTTGTGTGATCATCGTACGGACCTGTGTGAATCTGATGAAACTACCCATTGATAGAGACACTCTGCACGCTGTGATGCGTATTTGTCTGCGACTTACACGTGACTTCCGCTGCGCCAGAATATTCGCAGAACAAGGTGGCGTCCGTTTGTTATTGGAAATGACGCAAGCATCGTCTTTTACTGGATTTGTAACCCTGGCTACATTGTTAATCCGTCACGTGATTGAAGAACCACAAACTCTATGTTTGGCTATCGAGAAAGTTATCCGAGGCCGTGCCTTGAACACAATACCACCATCACACAAAGAAATCCTGTACTTGTTCAGACAAGTCAGTTCAGCTGTTTGCCGAAATCCTGAAGCGTTCTTGGAGGTTTGCAAATCAATCTTGCGTATTGATATTAGCGCTTTGCATAGACGTAGCAGTAAGT-ATTGATTTT-CTGTTTT-------AT-AGTTATTTGTT-TGCCTG-TTTGCCTAGCAAGTCATTAA-TTTTATG-TT-----TTATAA-TAGATGAAGAGGACGACAAACGTCTTCTG Carabus_dufourii_ZUHE111 GATATGGAGCTGGACGATCCAGATGTACCACCAAAAACCAGCACAAGTCTT-------GT--TGCGAACACTTGC--------AACCAGAACGG-AACACGTAACGTTGCTGTCGAAGGTCTCAGTGAAGAGTGTTGTGTGATAATCGTACGGACCTGTGTGAACCTGATGAAGCTACCCATTGATAGAGACACACTGCACGCTGTGATGCGTATTTGTCTGCGACTCACACGTGATTTCCGTTGCGCCAGAATATTCGCAGAACAAGGTGGCGTCCGTTTGTTGCTGGAAATGACGCAAGCATCGTCTTTTACCGGATTTGTAACTCTGGCTACATTGTTAATCCGCCATGTGATTGAAGAACCACAGACTCTCTGTTTGGCCATCGAGAAGGTTATTCGAGGCCGTGCCTTGAACACAATACCACCATCGCACAAAGAAATCTTGTACTTGTTCAGACAAGTCAGTTCAGCTGTTTGCCGAAATCCCGAAGCGTTCTTGGAGGTTTGCAAATCAATCTTGCGTATTGATATTAGCGCATTGCATAGACGAAGCAGTAAGT-ATTGATTTT-TTGTTTT-------AT-AATTATTTGTT-TGCCAG-TT---GTAGCAAGTGATTAA-TTTTATG-TT-----TTTTAA-TAGATGAAGAGGACGACAAACGTCTTCTG Carabus_lusitanicus_VESC5 GATATGGAGCTGGACGATCCAGATGTACCACCAAAAACCAGCACAAGTCCT-------GT--TGCGACCACTTGC--------AACCAGAACGG-AACACGTAACGTTGCTGTCGAAGGCCTCAGTGAAGAGTGTTGTGTGATAATCGTACGGACCTGTGTGAACCTGATGAAGCTACCCATTGATAGAGACACACTGCACGCTGTGATGCGTATTTGTCTGCGACTCACACGTGATTTTCGTTGCGCCAGAATATTCGCAGAACAAGGTGGCGTCCGTTTGTTGCTGGAAATGACGCAAGCGTCGTCTTTTACCGGATTTGTAACCCTGGCTACATTGTTAATCCGCCACGTGATTGAAGAACCACAGACTCTCTGTTTGGCCATCGAGAAGGTTATTCGAGGCCGTGCCTTGAACACAATACCACCATCGCACAAAGAAATCTTGTACTTGTTCAGACAAGTCAGTTCAGCTGTTTGCCGAAATCCCGAAGCGTTCTTGGAGGTTTGCAAATCAATCTTGCGTATTGATATTAGCGCATTGCATAGACGAAGCAGTAAGT-ATTGATTTT-CTGTTTT-------AT-AATTATTTGTTTTGCGAG-TT---GTAGCAAGTGATTAA-TTTTATG-TT-----TTATAA-TAGATGAAGAGGACGACAAACGTCTTCTG Carabus_macrocephalus_FORO157 ??????GAGCTGGACGATCCAGATGTACCACCAAAAACCAGCACAAGTCCT-------GT--TGCGACCACTTGC--------AACCAGAACGG-AACACGTAACGTTGCTGTCGAAGGTCTCAGTGAAGAGTGTTGTGTGATAATCGTACGGACCTGTGTGAACCTGATGAAGCTACCCATTGATAGAGACACACTGCACGCTGTGATGCGTATTTGTCTGCGACTCACACGTGATTTCCGTTGCGCCAGAATATTCGCAGAACAAGGTGGCGTCCGTTTGTTGCTGGAAATGACGCAAGCATCGTCTTTTACCGGATTTGTAACCCTGGCTACATTGTTAATCCGCCACGTGATTGAAGAACCACAGACTCTATGTTTGGCCATCGAGAAGGTTATTCGAGGCCGTGCCTTGAACACAATACCACCATCGCACAAAGAAATCTTGTACTTGTTCAGACAAGTCAGTTCAGCTGTTTGCCGAAATCCCGAAGCGTTCTTGGAGGTTTGCAAATCAATCTTGCGTATTGATATTAGCGCATTGCATAGACGAAGCAGTAAGT-ATTGATTTT-CTGTTTT-------AT-AATTATTTGTT-TGCCAG-TT---GTAGCAAGTGATTAA-TTTTATG-TT-----TTATTA-TAGATGAAGAGGACGACAAACGTCTTC?? Carabus_riffensis_KETA569 GATATGGAGCTGGATGATCCAGATGTACCACCAAAAACCAGCACAAGTCCC-------GT--TGCGAACACTTGC--------AACCAGAATGG-AACACGTAACATTGCTGTCGAAGGTCTCAGTGAAGAGTGTTGTGTGATAATCGTACGAACCTGTGTGAACCTGATGAAGCTACCCATTGACAGAGACACACTGCACGCTGTGATGCGTATTTGTCTGCGACTCACACGTGATTTCCGTTGCGCCAGAATATTCGCGGAACAAGGTGGCGTCCGTTTGTTGCTTGAAATGACGCAAGCATCGTCTTTTACCGGATTTGTAACCCTGGCTACATTGTTAATCCGTCACGTGATTGAAGAACCACAGACTCTATGTTTGGCCATCGAGAAGGTTATTCGAGGCCGTGCCTTGAACACAATACCGCCATCGCACAAAGAAATCTTGTACTTGTTCAGACAAGTCAGTTCAGCTGTTTGCCGAAATCCCGAAGCGTTCTTGGAGGTGTGCAAATCAATCTTGCGTATTGATATTAGCGCATTGCATAGACGAAGCAGTAAGT-ATTGATTTT-TCTGTGT-----------TTTATTTGTT-TGCCAG-TT---GTAGCAAGTGATTAA-TTTTATG-TT-----TTATAA-TAGATGAAGAGGACGACAAACGTCTTCTG ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 681; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 681; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 681; END; BEGIN TREES; Title 'Trees from "HUWE1_Q_INSI_1_complete_ULN.(time).con"'; LINK Taxa = Untitled_Taxa_Block; TRANSLATE 1 TURQ52001_auropuntatum, 2 Calosoma_sycophanta_CALO25405, 3 Carabus_clatratus_TURQ51901, 4 Carabus_irregularis_ROMA94006, 5 Carabus_morbillosus_MAZA5908, 6 Carabus_morbillosus_TUNC1624, 7 Carabus_morbillosus_TUNB1623, 8 Carabus_morbillosus_TUNA1622, 9 Carabus_rugosus_KSAR65807, 10 Carabus_rugosus_SMAR43907, 11 Carabus_auronitens_ROMA93906, 12 Carabus_rutilans_SENY1548, 13 Carabus_monilis_SAOU1538, 14 Carabus_cancellatus_ROMA94106, 15 Carabus_cancellatus_TACHcc816, 16 Carabus_melancholicus_TIDI39104, 17 Carabus_melancholicus_EALM42207, 18 Carabus_melancholicus_ROBU37, 19 Carabus_famini_MORR54807, 20 Carabus_famini_EURY1625, 21 Carabus_abbreviatus_TENE15007, 22 Carabus_dufourii_ZUHE111, 23 Carabus_lusitanicus_VESC5, 24 Carabus_macrocephalus_FORO157, 25 Carabus_riffensis_KETA569; TREE HUWE1_Q_INSI_1_complete_ULN = ((((1:8.549636729550002,2:8.549636729550002):7.78402034534545,3:16.333657074895452):1.2753299220735457,4:17.608986996968998):10.488795460887001,(((((((5:3.4820989204779984,(6:2.019157702453697,(7:1.2125575483451954,8:1.2125575483452025):0.8066001541084944):1.4629412180243015):3.710310686778403,(9:0.7340897096405996,10:0.7340897096405996):6.458319897615802):1.541833575475298,(11:5.480257189316998,12:5.480257189316998):3.2539859934147017):2.7110359749773014,13:11.445279157709):4.655525247566748,14:16.10080440527575):4.061402613204546,(15:15.145512526624998,((16:0.7093435529460077,17:0.7093435529460077):2.7404515509799996,18:3.449795103926):11.695717422698998):5.016694491855297):2.2445926864957073,(((19:5.217431614634002,20:5.217431614634002):4.224822124416999,21:9.442253739051):6.116405645966001,((22:5.543868960798999,(23:2.555362831636552,24:2.555362831636552):2.988506129162447):5.049842209850501,25:10.5937111706495):4.964948214367501):6.8481403199590005):5.6909827528799966); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 778376965946413457; tell It; setDefaultOrder 22 0 21 10 6 20 19 18 5 14 9 13 12 11 15 17 1 8 7 2 16 24 23 3 4; attachments ; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 4013075851798892887; checksum 0 1465455267 null; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #4013075851798892887 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 700 500; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleColorsPanel off; birdsEyeWidth 2; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; endTell; endTell; endTell; end;