#NEXUS [written Mon Feb 20 00:06:24 CET 2012 by Mesquite version 2.01 (build j28) at Carmelo-TOSH/192.168.1.132] BEGIN TAXA; TITLE ITS2_Q_INSI_1_NoGaps; DIMENSIONS NTAX=32; TAXLABELS Calosoma_sycophanta_CALO25405 Carabus_monilis_SAOU1538 Carabus_rugosus_SMAR43907 Carabus_melancholicus_TIDI39104 Carabus_dufourii_ZUHE111 Carabus_melancholicus_ROBU37 Carabus_melancholicus_EALM42207 Carabus_violaceus_POPO83000 Carabus_morbillosus_TUNC1624 Carabus_morbillosus_TUNB1623 Carabus_morbillosus_MAZA5908 Carabus_morbillosus_TUNA1622 Carabus_irregularis_ROMA94006 Carabus_nemoralis_RONC1549 Carabus_auronitens_ROMA93906 Carabus_lusitanicus_VESC5 Leistus_spinibarbis_CMOJ3909 Ceroglossus_chilensis_CHIL1GA Carabus_rugosus_KSAR65807 Carabus_coriaceus_TURQ91306 Carabus_macrocephalus_FORO157 Carabus_clatratus_TURQ51901 Cychrus_semigranosus_CYCH1003 Calosoma_auropunctatum_TURQ52001 Carabus_riffensis_KETA569 Carabus_rutilans_SENY1548 Carabus_abbreviatus_BABA44 Carabus_cancellatus_ROMA94106 Carabus_cancellatus_TACHcc816 Carabus_famini_EURY1625 Carabus_famini_MORR54807 Carabus_abbreviatus_TENE15007 ; END; BEGIN CHARACTERS; TITLE ITS2_Q_INSI_1_NoGaps; DIMENSIONS NCHAR=86; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Calosoma_sycophanta_CALO25405 CGGATACTGTTCCTGGACCCGCCTGGCTGAGGGTCGTGCTATATTACCAGACTGCCGGTCGGGGAACCAGTGGTGTGCCCGTTTCC Carabus_monilis_SAOU1538 CGGATACTGTTCCTGGACCCGCCTGGCTGAGGGTCGTGCTATATTACCAGACTGCCGGTCGGGGAACCAGTGGTGTGCCCGTTTCC Carabus_rugosus_SMAR43907 CGGATACTGTTCCTGGACCCGCCTGGCTGAGGGTCGTGCTATATTACCAGACTGCCGGTCGGGGAACCAGTGGTGTGCCCGTTTCC Carabus_melancholicus_TIDI39104 CGGATACTGTTCCTGGACCCGCCTGGCTGAGGGTCGTGCTATATTACCAGACTGCCGGTCGGGGAACCAGTGGTGTGCCCGTTTCC Carabus_dufourii_ZUHE111 CGGATACTGTTCCTGGACCCGCCTGGCTGAGGGTCGTGCTATATTACCAGACTGCCGGTCGGGGAACCAGTGGTGTGCCCGTTTCC Carabus_melancholicus_ROBU37 CGGATACTGTTCCTGGACCCGCCTGGCTGAGGGTCGTGCTATATTACCAGACTGCCGGTCGGGGAACCAGTGGTGTGCCCGTTTCC Carabus_melancholicus_EALM42207 CGGATACTGTTCCTGGACCCGCCTGGCTGAGGGTCGTGCTATATTACCAGACTGCCGGTCGGGGAACCAGTGGTGTGCCCGTTTCC Carabus_violaceus_POPO83000 CGGATACTGTTCCTGGACCCGCCTGGCTGAGGGTCGTGCTATATTACCAGACTGCCGGTCGGGGAACCAGTGGTGTGCCCGTTTCC Carabus_morbillosus_TUNC1624 CGGATACTGTTCCTGGACCCGCCTGGCTGAGGGTCGTGCTATATTACCAGACTGCCGGTTGGGGAACCAGTGGTGTGCCCGTTTCC Carabus_morbillosus_TUNB1623 CGGATACTGTTCCTGGACCCGCCTGGCTGAGGGTCGTGCTATATTACCAGACTGCCGGTTGGGGAACCAGTGGTGTGCCCGTTTCC Carabus_morbillosus_MAZA5908 CGGATACTGTTCCTGGACCCGCCTGGCTGAGGGTCGTGCTATATTACCAGACTGCCGGTTGGGGAACCAGTGGTGTGCCCGTTTCC Carabus_morbillosus_TUNA1622 CGGATACTGTTCCTGGACCCGCCTGGCTGAGGGTCGTGCTATATTACCAGACTGCCGGTTGGGGAACCAGTGGTGTGCCCGTTTCC Carabus_irregularis_ROMA94006 CGGATACTGTTCCTGGACCCGCCTGGCTGAGGGTCGTGCTATATTACCAGACTGCCGGTCGGGGAACCAGTGGTGTGCCCGTTTCC Carabus_nemoralis_RONC1549 CGGATACTGTTCCTGGACCCGCCTGGCTGAGGGTCGTGCTATATTACCAGACTGCCGGTCGGGGAACCAGTGGTGTGCCCGTTTCC Carabus_auronitens_ROMA93906 CGGATACTGTTCCTGGACCCGCCTGGCTGAGGGTCGTGCTATATTACCAGACTGCCGGTCGGGGAACCAGTGGTGTGCCCGTTTCC Carabus_lusitanicus_VESC5 CGGATACTGTTCCTGGACCCGCCTGGCTGAGGGTCGTGCTATATTACCAGACTGCCGGTCGGGGAACCAGTGGTGTGCCCGTTTCC Leistus_spinibarbis_CMOJ3909 CGGATACTGTTCCTGGACCCGCCTGGCTGAGGGTCGTGCTATATTACCAGACTGCCGGTCTGGGAGGCAAGGGCGGGCTTGTACCC Ceroglossus_chilensis_CHIL1GA CGGATACTGTTCCTGGACCCGCCTGGCTGAGGGTCGTGCTATATTACCAGACTGCCGGTCGGGAAACCAGTGGTGTGCTCGTTCTC Carabus_rugosus_KSAR65807 CGGATACTGTTCCTGGACCCGCCTGGCTGAGGGTCGTGCTATATTACCAGACTGCCGGTCGGGGAACCAGTGGTGTGCCCGTTTCC Carabus_coriaceus_TURQ91306 CGGATACTGTTCCTGGACCCGCCTGGCTGAGGGTCGTGCTATATTACCAGACTGCCGGTCGGGGAACCAGTGGTGTGCCCGTTTCC Carabus_macrocephalus_FORO157 CGGATACTGTTCCTGGACCCGCCTGGCTGAGGGTCGTGCTATATTACCAGACTGCCGGTCGGGGAACCAGTGGTGTGCCCGTTTCC Carabus_clatratus_TURQ51901 CGGATACTGTTCCTGGACCCGCCTGTCTGAGGGTCGTGCTATCTTACCAGACTGCCGGTCGGGGAACCAGTGGTGTGCCCGTTTCC Cychrus_semigranosus_CYCH1003 CGGATACTGTTCCTGGACCCACCTGGCTGAGGGTCGTGCTAACTTACCAGACTGCCGGTCGGACAACCAGACACATCAGCGTGTGT Calosoma_auropunctatum_TURQ52001 CGGATAGTGTTCCTGGGCCCGCCTGGCTGAGGGTCGTGCTATATTACCAGACTGCCGGTCGGGGAACCAGTGGTGTGCCCGTCTCC Carabus_riffensis_KETA569 CGGATACTGTTCCTGGACCCGCCTGGCTGAGGGTCGTGCTATATTACCAGACTGCCGGTCGGGGAACCAGTGGTGTGCCCGTTTCC Carabus_rutilans_SENY1548 CGGATACTGTTCCTGGACCCGCCTGGCTGAGGGTCGTGCTATATTACCAGACTGCCGGTCGGGGAACCAGTGGTGTGCCCGTTTCC Carabus_abbreviatus_BABA44 CGGATACTGTTCCTGGACCCGCCTGGCTGAGGGTCGTGCTATATTACCAGACTGCCGATCGGGGAACCAGTGGTGTGCCCGTTTCC Carabus_cancellatus_ROMA94106 CGGATACTGTTCCTGGACCCGCCTGGCTGAGGGTCGTGCTATATTACCAGACTGCCGATCGGGGAACCAGTGGTGTGCCCGTTTCC Carabus_cancellatus_TACHcc816 CGGATACTGTTCCTGGACCCGCCTGGCTGAGGGTCGTGCTATATTACCAGACTGCCGATCGGGGAACCAGTGGTGTGCCCGTTTCC Carabus_famini_EURY1625 CGGATACTGTTCCTGGACCCGCCTGGCTGAGGGTCGTGCTATATTACCAGACTGCCGATCGGGGAACCAGTGGTGTGCCCGTTTCC Carabus_famini_MORR54807 CGGATACTGTTCCTGGACCCGCCTGGCTGAGGGTCGTGCTATATTACCAGACTGCCGATCGGGGAACCAGTGGTGTGCCCGTTTCC Carabus_abbreviatus_TENE15007 CGGATACTGTTCCTGGACCCGCCTGGCTGAGGGTCGTGCTATATTACCAGACTGCCGATCGGGGAACCAGTGGTGTGCCCGTTTCC ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 86; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 86; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 86; END; BEGIN TREES; Title 'Trees from "ITS2_Q_INSI_1_NoGaps_gb_ULN_cons.(time).con"'; LINK Taxa = Untitled_Taxa_Block; TRANSLATE 1 Calosoma_sycophanta_CALO25405, 2 Carabus_monilis_SAOU1538, 3 Carabus_rugosus_SMAR43907, 4 Carabus_melancholicus_TIDI39104, 5 Carabus_dufourii_ZUHE111, 6 Carabus_melancholicus_ROBU37, 7 Carabus_melancholicus_EALM42207, 8 Carabus_violaceus_POPO83000, 9 Carabus_morbillosus_TUNC1624, 10 Carabus_morbillosus_TUNB1623, 11 Carabus_morbillosus_MAZA5908, 12 Carabus_morbillosus_TUNA1622, 13 Carabus_irregularis_ROMA94006, 14 Carabus_nemoralis_RONC1549, 15 Carabus_auronitens_ROMA93906, 16 Carabus_lusitanicus_VESC5, 17 Leistus_spinibarbis_CMOJ3909, 18 Ceroglossus_chilensis_CHIL1GA, 19 Carabus_rugosus_KSAR65807, 20 Carabus_coriaceus_TURQ91306, 21 Carabus_macrocephalus_FORO157, 22 Carabus_clatratus_TURQ51901, 23 Cychrus_semigranosus_CYCH1003, 24 Calosoma_auropunctatum_TURQ52001, 25 Carabus_riffensis_KETA569, 26 Carabus_rutilans_SENY1548, 27 Carabus_abbreviatus_BABA44, 28 Carabus_cancellatus_ROMA94106, 29 Carabus_cancellatus_TACHcc816, 30 Carabus_famini_EURY1625, 31 Carabus_famini_MORR54807, 32 Carabus_abbreviatus_TENE15007; TREE ITS2_Q_INSI_1_NoGaps_gb_ULN = ((((((1:0.9493741796905795,2:0.9493741796905795):3.1392989054206204,(3:0.8663601845982525,4:0.8663601845982543):3.2223129005129456):1.8845456905865987,(((5:0.9066367853664978,6:0.9066367853664996):0.8016164013338494,(7:0.8894454929186999,8:0.8894454929186999):0.8188076937816491):3.8111978378396496,((9:2.467294777136889,((10:0.6173898253929622,11:0.6173898253929622):0.6754226309632383,12:1.2928124563562005):1.1744823207806885):1.2160713318059102,(13:0.8453043875997892,14:0.8453043875997892):2.83806172134301):1.8360849155971994):0.4537677511578):1.949825535076,(((15:1.0315744979820796,16:1.0315744979820796):3.606104859505935,(17:1.9595687240629078,18:1.959568724062906):2.678110633425107):2.968796271077384,((19:1.8167723675749494,(20:0.9511994491544513,21:0.9511994491544513):0.8655729184204999):3.5255613335604474,(22:2.063784746438729,23:2.063784746438729):3.2785489546966695):2.26414192743):0.3165686822084002):2.2616890137175503,(24:2.0137728139811006,(25:0.8858197662708491,26:0.8858197662708491):1.1279530477102515):8.170960510510248):1.1164953909768514,(27:8.799718491631747,(((28:0.8613608766329417,29:0.8613608766329488):1.2219749588634494,30:2.0833358354963805):2.190638497270986,(31:0.9580754111800989,32:0.9580754111800989):3.3158989215872854):4.525744158864363):2.5015102238364513); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 6381565222224420944; tell It; setDefaultOrder 1 18 20 23 31 13 5 12 26 25 10 24 15 17 14 30 3 2 9 29 7 27 4 28 8 19 0 16 21 6 11 22; attachments ; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 7919894136649802156; checksum 0 1715014280 null; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #7919894136649802156 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 700 500; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleColorsPanel off; birdsEyeWidth 2; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; endTell; endTell; endTell; end;