#NEXUS
[written Mon Feb 20 14:00:49 EST 2012 by Mesquite  version 2.75 (build 566) at M100/49.127.7.76]

BEGIN TAXA;
	TITLE Taxa;
	DIMENSIONS NTAX=39;
	TAXLABELS
		Homo_sapiens_PRF1 Oncorhynchus_mykiss_PRF1 Salmo_salar_PRF1.1 Salmo_salar_PRF1.2 Paralichthys_olivaceus_PRF1 Takifugu_rubripes_PRF1.5 Takifugu_rubripes_PRF1.1 Takifugu_rubripes_PRF1.2 Takifugu_rubripes_PRF1.6 Takifugu_rubripes_PRF1.3 Tetraodon_nigroviridis_PRF1.1 Tetraodon_nigroviridis_PRF1.3 Tetraodon_nigroviridis_PRF1.2 Oryzias_latipes_PRF1.1 Oryzias_latipes_PRF1.3 Oryzias_latipes_PRF1.4 Oryzias_latipes_PRF1.6 Oryzias_latipes_PRF1.5 Oryzias_latipes_PRF1.2 Oryzias_latipes_PRF1.8 Gasterosteus_aculeatus_PRF1.1 Gasterosteus_aculeatus_PRF1.2 Gasterosteus_aculeatus_PRF1.3 Gasterosteus_aculeatus_PRF1.4 Gasterosteus_aculeatus_PRF1.5 Gasterosteus_aculeatus_PRF1.6 Carassius_auratus_PRF1.1 Carassius_auratus_PRF1.2 Carassius_auratus_PRF1.3 Ctenopharyngodon_idella_PRF1.1 Ctenopharyngodon_idella_PRF1.2 Danio_rerio_PRF1.3 Danio_rerio_PRF1.1 Danio_rerio_PRF1.4 Danio_rerio_PRF1.2 Danio_rerio_PRF1.6 Danio_rerio_PRF1.5 Danio_rerio_PRF1.7 Danio_rerio_PRF1.8 
	;

END;


BEGIN CHARACTERS;
	TITLE  Character_Matrix;
	DIMENSIONS  NCHAR=439;
	FORMAT DATATYPE = Protein GAP = - MISSING = ?;
	MATRIX
	Homo_sapiens_PRF1               PCHTAARSECKRSHKFVPGAWLAGEGVDVTSLRRSGSFPVDTQTCTLCENALQEGLQRLPLALTNWRAQGSGCQRHVTRAKVSSTEAVARDAARSIRNDWKVGLDTSNVHVSVAGSHSQAANFAAQKTHQDQYSFSTDTVECRFYSFHVVHTPPLHPDFKRALGDLPPAYLRLISNYGTHFIRAVELGGRISALTALRTCELALEGLTDNEVEDCLTVEAQAEAKACEEKKKKHKMTASFHQTYRERHSEVVGGHDLLFGIWVNSLPGSPGLVDYTLEPLHVLLDSQPRREALRRALSQYLTDRARWRCHGSAVTTQDCCPRQRGLAQLEVTFIQAWGLWGDWFTATDAYVKLFFGGQELRTSTVWDNNNPIWSVRLDFGDVGPLRLQVWDLLGTCDQAPKSGSHEVRCNLNHGHLKFRYHARCLPHLGGGTCLDYVPQ
	Oncorhynchus_mykiss_PRF1        SCTIGSANECKEAE-FAPGTNLAGEGFDITKMKRKGAFVIDMNTCTLCKNPYLEGQQRLPLAVVDWRPNHQ-CSMKVSSKLHRSSESLVSSSGSSVENNWQVNLESKSGKIMLAGTNSKLAEYSMEKTKSDKFSFTSHSVSCGYYSYRVSGQPKLHREFKTAVKNLPQRYYKLIDNFGTHYITKVSLGGTVQSVTSIKQCQASLQGLSAEEVKMCLDVEASTEFKHCQEDKSKTESKASFSSVFNDRFTEVKGGHELLFSAWLDSLPHYPDIVSYSLESLHELLPTTPARKHLRKAISDYILEKALWKCHNNPGVSADCCPTRK?LARVVITVQRGANLWGDHTTATDGYVKVAFAGTIGRTTVIYNNNNPSWAMSYDLGTVKKLRFEVWDLLGECEKELTAGVKEDLCNLQHGQMYYKWEAVCAPSLGGSACMDYVPS
	Salmo_salar_PRF1.1              SCIIGSANECKEAE-FAPGTNLAGEGFDITKMKRKGAFVIDMNTCTLCENPYLEGKQRLPLAVVDWRPNHQ-CSMKVSSKLHRSSESLVSSSSSSVENNWQVNLESKSGKFMLAGTNSKLAEYSMEKTKSDKFSFTSHSVSCGYYSYRVSGQPKLHREFKTAVKNLPQRYYKLIDNFGTHYITKVSLGGTVQSVTSIMQCQASLQGLSAEEVKMCLDVEATTEFKHCQEDKSKTESKASFSSVFNDRFTEVKGGHELLFSAWLDSLPRYPDIVSYSLESLHELLPTTPARKHLRKAISDYILENALWKCHNNPGVSADCCPTRKGLARVIITVQRGANLWGDHTTATDGYVKVAFAGTIGRTRVIYNNNNPSWAMSYDLGTVKKLRFEVWDLLGECEKELTAGVKEDLCNLQHGQMFYKWEVVCAPSLGGSACMDYVPS
	Salmo_salar_PRF1.2              SCTTGRPAECKAAL-SAPGTNLAGEGFDVVTMERKQAYVIDVDTCTLCVNPFMDRAQRLPAAVVDWRPSQK-CNMKLASMVYDSSEAFVSSSQTEVDVSWKIGLDQAKGSVMVGGTHSRAAKTVMSQSKKDKYSFIKQDIHCSYYSYRLLDDPPLHPEFSRSLGLLPVDYRRFLDNFGTHFIKKVLLGGRVKSVTSLRVCQAALSGYNENEVKDCLEAEASTETKFCKKDLKKRDTKDRFSSTFQERFTEVVGGEDLLFSQWASSLKTIPDVINYSLHPLHLLVKQGSKRAGLKKAVEDYILGHALVKCKASKEMTSQCCPQEKGLAHLTVTVKYARDLWGDTTSETDGLVKVIMDNEARQTKVIHNKNNPVWNSFYDFGFVSELKFEVYDLLGNCSTRPIVGSDKQLCALNHGNMYYSYTVDCAPGLGGSTCGEYVPS
	Paralichthys_olivaceus_PRF1     SCTDGKPMQCQNAE-YAPGANLAGEGFDITKLERKGAFVIDMNTCTLCTNPYMENWQKLPLSVLDWRAKQS-CSNKVASKLHRSSESLVSSSSASIENNWQINLDPRSGSLMLAGAHSKVAEYSMEKTKKDKFSFTSQSISCEYYSYRVSNTPKLHKEFKKAVKQLPQQFYNLIDNFGTHYITKVKLGGSVESVTSIRQCQASLEGLSVEEVQMCLEAEASAQNKFCKRDANKMESKSSFSSHFGDRFTEIKGGHDLLFSAWLTTLPEHPDILSYSLKSLHELLPRNPLQKNLRSAISHYILEKGLLRCHNDPAVNQNCCPTRVGMAQVIITVQRATGLWGDHTTSTDGYVKVSLDTLVQQSPVINNNNNPHWAMVVPLGSQPKVRFEVWDLLGACEQVLSAGVKEEMCQLQHGLLYYKWEVRCAPSLSGNTCTEYKSS
	Takifugu_rubripes_PRF1.5        TCWTASVPECEKAP-FVPGHNLAGKGFDVVRMQRTGAFVINVKTCTLCSNRFQQGTQKLPAAVLDWRPFSR-CSKQLSSALHHSVDSLLRSSSSLVRNNWGIGLSENIGNAVLGGSRSDLAKFARLQHSVDKATFAIHEISCTYYSYRLADHPQLSAEFTKHLKRLPALYRRLIDTYGTHYIHQVQLGGKVRRVTAFKTCLAALKGFTEINVERCLNAELRTLSNKCDNLQRGN-LSMGFYRGFMTHKIEVVGGEDILYQQWINSLHDNPDVVSYAIFPLHQLVQDSQIAANLRDAITGYIQENQLRVCSPTPNLDHHCCPP--GRGTLKVTIHRAVGLNADTSTKADAYVKIFYNGLYDETETVMNNNNPVWNAVFDLGPVLKLKFEVWDFVGKCMTVPERGTHSSGCQLNTGVLYYTYVVGCRG------CDGF---
	Takifugu_rubripes_PRF1.1        SCTQGTPKECLDAE-FAPGSNLAGEGFDITKLERKGAFVIDMNTCTLCSNPYLENKQKLPVSVVDWRSKAS-CTMQITSKLHRSSESLVTSSSSSVDNNWQTNLDNKAASMMLAGTHSKLAEYSMEKTKNDKFSFTSQGMSCTFYSLRVSDSPKLSNEFLRAVRGLPARFYKLIDNFGTHYITKVRLGGSAHSVTSIRQCQASLQGLSTEEVQMCLEAEASSEMKHCKKDTEKMEFKTSFSGLFNDRFTEIKGGQDLLFSAWLNTLPLNPDIVSYSLNSLHELLQVDPARKNLRSAISHYILERGLWKCHNDPAVNQECCPTRKGMARVIITVERGSGLWGDHTTATDGYVKVFFNNMFQRTRVIYNNNDPHWGRVVDLGTQHRVRFEVWDLLGECDRVLSAGDKQDVCALQHGRMFFKWKVECAPSLSGESCTTYKPS
	Takifugu_rubripes_PRF1.2        ACQTSSFTECQNAP-FVPGHNLVGEGFDVVTMKTSGASVVDVKNCTMCHNSLLNQAQKLPVSVLDWRVKVN-CQRSLSSKIFESSQAVMKETSSSLGVSWKVGLGPKLGGFSVGGSHSKTSAFARSHSRQDKFSFTSYEMKCRYYTFRLHARPPLSKEFEVSLKNLPSAFRQFISVYGTHFIRRVHLGGRVNSMTAIRTCQASISQMSVHTVSNCLSVEAEAASRFCQSKSKSLKTGATFSQAFSDRTTDVLGGDDILFQPWLISLKKVPGLVSYQLSPLHLLVPDNVLQESLRSAISDYISKSAKPLCQGHHMVNSDCCPAEYGVARMNVTVVRAAGLWGDYFSKTDGYVKVFYHQAASATPIIWNNNFPAWNYLIRFETVNPVRFEVWDLLGRDSLVPTSGSISTSFRLKHGSLLVRVSAVCAPSLQGSLCEQYAAS
	Takifugu_rubripes_PRF1.6        PCRIGNFSQCQSAP-FVPGHNLVGEGFNVVTLQRKGAYVIDVKTCTLCSNSLQGNLQKLPLSALDWRPFSR-CSADIYGSLHQSVSSLLETYTSQDSSDWKVGLNDKFANLEVGGTQSSAYKYAIRRTGEDRHFFSLHRVTCGYYSYRVSSKPTLSSEFHRDLDRLPAQYNQLIYTYGTHYIRQVYLGGRLRRITASRTCLSTLNALSTSEIHSCLSLGIGNRE-SCKKVLNNQDVSTSFGSGLFQHYTEVVGGTEFSLMSWLNTLKDHPDIVSYSLRPIYELVPSNLTRLGMKAAIEQYLQDNGIKKCSSVPNLASNCCPKEARMGTLDVTIVRAWNLKGDLFGATEAYAKMWFGPFYYRTSMIR-SNNPWWNARYYLSKVFGLKVEVWDRLGSCTWYPQQGTRTVTCPTQGGRGQVRYTLTCDRHLTGSRCERYKPT
	Takifugu_rubripes_PRF1.3        VGYIGTPTECAKAH-FVPGYNLGGEGFDVVTMERKGAFVIDTESCRLYRNRYMNRVQKVPVSVVDWRILPQ-CSLKVDSMLYDSAEALVNDSASSVSNNWKVGLEGASVGVGLGGSHSRESAFGMQKSKQDRYSFSRQSIQCKVYRYRMSKKPLLNAEFLSVVNSLPQQYRALIDTYGTHYITKVALGGSIKAVTSIKTCEAAINGLSTTEVSDCLSVEASAMTEHCKAQKKKLGHSQNYRSMFNERHTEVTGGSDVLFEGWLKSLKTLPDVVQYDLHPLHMVLPAPPAVKGLKAEVEQYIKNNAIATCNSSSHIKSNCCPNGKGLATLKVFRLYAQNLYGDRWSQTDGSVEVTYGNVVKRTNIISNNDNPVWGETFEFGPINKLRFRVYDLLGECSFELHSGKQSNSCMLNHGTFFFSYTAECAPSLGGNRCQEYIPA
	Tetraodon_nigroviridis_PRF1.1   SCSQGKPQECLEAE-FAPGSNLAGEGFDITKLERKGAFVIDMNTCTLCSNPYLENKQKLPVSVVDWRSQNS-CSLQISSGLHRSSESLLTSSTSSVDNSWGVNLDNKAASMMLAGTQSKLAEYSMEKTKNDKFSFASQSTSCVFYSYRLSSSPTLSQEFRKAVRGLPLKFYRLIDTFGTHYITKVKLGGEVQSVTSIRQCQASLQGLSTEEVQMCLEAEASTELKHCKKDTEKMESKSSFSSLFNDRFTEIKGGQDLLFSSWLNTLPLIPDIISYSLNSLHELLPTSPVRKDLRSAIRHYILEKGLWKCHNNPAVNADCCPTRKGMARVIITVQRATDLWGDHTTATDGYVKVFFNNLVHRSQVIYNNNNPHWAREVDLGTQKKVRLEVWDLLGACQQVLTAGVQQEVCSLQHGRLFYSWKVECAPSLDGPGCTTYKPS
	Tetraodon_nigroviridis_PRF1.3   TCWTASGPECEKAP-FVPGHNLAGEGFDVVRMRRTGAYVINVKTCTLCPNRFQQGVQKLPAAVLDWRPFSR-CSKQLSSALHHSVDSLLRSSSSLVNNNWGVGLSENIGKVVLGGSRSDLAKFARSQHSVDKATFAIHEISCTYYSYRLADHPQLSAEFTKYLRRLPGPYRRLIDTYGTHYIHQVQLGGKVRRITAFRTCLATLKGFAETDVKTCLNAELRTLSNKCDNLLKGN-MSMGFYQGFMTHKIEVIGGEDILYQQWMNSLHDNPDVISYAIFPLHQLVPDSQIAANLRDAITEYIQENQLRECSPTPNLDHNCCPLRSGRGTLRLMIHRAAGLRADTFTKTDAYVKIFYNGMYEETETVMDDNDPVWNATYNFGSVQELRLEVWDVAGRCVAVPERGTHSFSCQLKKGVLYFTYEAKCDAHLTGFRCGRYSPS
	Tetraodon_nigroviridis_PRF1.2   ACQTSSFTECQQAP-FVPGHSLVGEGFDVVTMKSSGASVVDVKNCTVCHNPLLNQTQKLPVSVLDWRVKVM-CQRSLSSKIFESSQEVMKEASSSLSVSWKVGLSPLIGGAAVGGSHSRSSQFASSHSRKDKFSFTTHNLKCSYYTFRIHSRPPLSKEFEESLKNLPSAFTQFLSVYGTHFIRRVRLGGHVNSITAIRTCQASMSQMSVQTVSNCLSVEAQAATQFCKTKSSKLKTGATFRQAFSDRSIEVLGGDDVLFNSWLASIKRVPGLVWYQISPLHLLVPDNVLQETLSKAISHYISTRARSLCKGHRLVDANCCPSDYGVARLNVTVVQASGLWGDYFSKTDGYVKVFYGQSSEMTGIIWNNNFPVWNHLIRFQTVKPVTFEVWDLLGRVRVVPTAGSTDRWFRLKHGSVRVRLSAVCAPSLQGSLCEQYAAT
	Oryzias_latipes_PRF1.1          MCTDGTPKECQEAE-FAPGSNLAGEGFDITSMERKGAFVLDMNACTLCTNPYMDNRQKLPLSVVDWRATHS-CSSKVSSQIFKSSESLVESTTSSVENNWKVGLSGAISNLMLAGSHSKVAGYSMQKTKSDKFSFTTQGLSCEYYSYRVSKAPTLQKDFLDSVKQLPDNYYHLIDTFGTHYITKVKMGGKVQAVTSIRECLAHLEGIEVNEAEMCLRVEASIEVQNCQAKKDKSGRKIAFSSYFNDRFTEVRGGQDLIFSAWLNSVPQNPDIISYSLDSVHELFPKSCMRENLRSAITHYILEKGLLKCHNNPAVTPDCCPAEKSKARVIITVVRASGLWGDYFTATDAYVKVFIGKLVGRTPVIANNNNPQWNMAIDLGTQQKLKFEVWDLLGTCERALTSGNKRGVCALNHGELFFNWKVECTPNLSGSYCQNYQSS
	Oryzias_latipes_PRF1.3          MCTDGTPQECQQAE-FVPGSNLAGEGFDITSMERKGAFVLDMNACTLCTNPYMDNRQKLPLSVVDWRAKHS-CSSKVSSQIFKSSESLVESTTSSVQNDWKVGLNPFKANLMLAGSHSKVAGYSMEKTKSDKFSFTTQGLSCEYYSYRVSKAPTLQKDFLDSVKQLPDNYYHLIDTFGTHYITKVKMGGKVQAVTSIRECEAHLNGIEVNEVDMCLRVEASSEAEQCQGKKDKLGRKITFSSYFTDRFMEVKGGQDLIFSAWLNSVPQNPDILSYSLDSVHELIPKSPMRQNLRSAITHYILEKGLMKCHNNPAVTPDCCPAEKSEARVIITVVRASKLWGDYSSGTDAYVKVFFGKLVGRTPIIADDDNPHWNMKLDLGTQVKLKFEVWDLLGTCERALTSGTKRGVCALNHGELFFNWKVECTPNLSGSYCQNYQSS
	Oryzias_latipes_PRF1.4          TCTDGKPKECQEAE-FVPGSNLAGEGFDITKMERKGAFVLDMNACTLCSNPYMEMKQKLPLSVVDWRAKHS-CSGKVSSKLHKSSESLVESSTSSVENNWKVDLEDKSGSVMLAGTNSKLAEYAMEKTKNDRFSFSTNSITCEYYSYRVSSHPRMHQEFRKAVRELPKIFNKVIEKFGTHYITKVKLGGKVKTVTSIRQCEASLQGLSAEEVQMCLEAEASTEMKHCKKDSNKLDNKQAFSDFFTDRLTEIRGGHDLLFSAWLSSVPQYPDILSYSLDSLHDLLSPKPVRKNLRSAIRHYILEKGLWKCHNEPAVNSDCCPTRKGMARVIITVQRALDLWGDHSTPTDGFVKVLVNNQVHRSPVINNNNNPHWENIVDLGSMNIIRFEVWDLLGGCEEILTAGTKEDVCTLQHGRFYYKWEVKCAPSLGGKSCTDYEAS
	Oryzias_latipes_PRF1.6          ACRIGTGPECEKAP-FVPGHNLAGEGFDVVRLRRTGAYVINVKTCTLCPNRFQKGIQRLPASVLDWRPFSR-CSKQLSSALHHSVESLLRSSNSLVNNNWGLGLSESIGHGVLGGSRSDLAKFASSQHSVDKATFALHEISCTYYSFRLADHPQLSSEFIKHLRKLPASYRRLIDTYGTHYIHQVHLGGKVRRITAFRTCLATLKGFSETEIKNCLNVELRSFSNKCDGLLKGN-MSMGFYQGFMTHKIEVIGGEDILYQQWMNSLHENPDVVSYAIFPLHHLVEDSRVSANLRSVVTEYIKENQLQECSPTPNLDHNCCPLRAGRGTLTVEIHRGAGLRADTFTKTDAFVKIFYSGMYEETETVMDNNDPVWNATYEFGSVQALRFEVWDMAGTCVVYPERGRHSLGCKLRKGVFYFTYTITCDAHLTGYRCGRYSPN
	Oryzias_latipes_PRF1.5          SCRIGNSSECDSAS-FVPGHNLVGEGFDVVRLQRKGAHVIDVKSCTLCSNSLQGNLQKLPVSVIDWRAFSH-CSADIYSSSHTSVSSLIETYSAQDSNDWKVGLEYVSANLEVGGTRSSAYNFGSQRTSVDRHFFSIHRVTCSHYSYRSSVRPPLSSEFMKDVGRLPAQYEELIHIYGTHYIRQVYLGGRLRRVTATRTCLASLNGLSSNEAHSCLSQGISSSHKSCKQVLENQGTSTTYGSGFHQHYTDVSGGNEFSVSHWMASLKDHPDIVSYSLRPMYDLMPNEAQRAGMKAAIEKYLGDNAVKRNGYTPNLATNCCPMQARRGTLEVTIIRGWNLKGDLTGKTESYAKLWFGPHDRRTHMIR-SNDPRWNAYYNLGKVPGLKVEVWDLLGTCTKSVIQGTHRFTCPAKKGGFEVQYTLTCDPHLTGDKCERYKPS
	Oryzias_latipes_PRF1.2          MCTDGTPKECLEAE-FAPGSNLAGEGFDITSMERKGAFVLDTNACTLCTNPYMDNRQKLPLSVVDWRATHS-CSSKVSSQIFKSSESLVESTTSSVQNDWKVGLNPFKANLMLAGSHSKVAGYSMEKTKSDKFSFTTQGLSCEYYSYRVSKAPTLQKDFLDSVKQLPDNYYHLIDTFGTHYITKVKMGGKVQAVTSIRECEAHLNGIEVNEVEMCLRVEASSEVQHCQGKKDKLGRKITFSSYFNDRFMEVKGGQDLIFSAWLNSVPQNPDILSYSLDSLHELFPKSPMRQNLRSAITHYILEKGLMKCHNNPAVTPDCCPAQRGMARVIITVVRASKLRGDDFTATDAYVKVFIGKLVGRTPIIANDDNPHWNMKLDLGTQVKLKFEVWDLLGTCEQDLTSGTKRGVCALNRGELFFNWKVECAPSLSGSYCQTYQSS
	Oryzias_latipes_PRF1.8          TCTDGTPQECQDAG-FVPGSNLAGEGFDITSMERKGAFVLDMNSCTLCTNPYMDNRQKLPLSVVDWRATHS-CSSKVSSQIFKSSESLVESTTSSVQNDWKVGLNPFKANLMLAGSHSKVAGYSMEKTKSDKFSFTTQGLSCEYYSYRISKTPTLQKDFLDSVKQLPNNYYHLIDTFGTHYITKVKMGGKVQAVTSIRECEAHLDGIEVNEAEMCLRVEASSEVQHCQGKKDKLGRKITFSSYFNDRFMEVKGGQDLIFSAWLNSVPQNPDTLSYSLDSLHELIPKSPMRENLCSAITHYILEKGLLKCHNNPAVTPDCCPAQRGMAR-IITVLGGSYLYGDDFTATDAYVKVFTGKQVFRTDTIDNDDFPKWNMKLDLGSQ-KLKFEVWDLLGSCERSLTSGTNSDACSLDYGELYFEWKVECAPNLSGSYCQTYQSS
	Gasterosteus_aculeatus_PRF1.1   SCTDGTPSQCAGAE-LAPGTNMAGEGFDITKMERKGSFVLNMSTCTLCTNPYLENKQKLPLSVVNWRPMQS-CSMKVGTALHQSSESLVNSLTSSVENNWKVNLDGRSASVMLAGTNSKVAEYSMEKSKKDKFSFASHSFSCEFYSYGVSSNPGLSGEFKKALKKLPQRFYKLIDNFGTHYITKVKMGGSVRSVTSIRQCQASLNGISSQEAEMCLEAEASTETKHCQKDINKRERQESFSSIFNDRFTETKGGHDLLFSSWLNTLPQNPDIVSCSLDSLHELLPVNPVRKNMRAAISHYILEKGLWRCHNDPSVNRDCCPTRKGMARVIITVQRAHGLWGDHTSATDGYVKVFLGDVPQRTPVIMNNNSPHWAMVMDLGSQKNVRFEVWDLLGTCNQVLQAGVKEEVCALQHGQLFYKVDVKCAPNLSGATCTDYKPS
	Gasterosteus_aculeatus_PRF1.2   VPFIGSPQQCEKAR-FVPGYNLGGEGFDIVKMERKGAYVIDTETCRMYNNNFMNGSQKVPAAVLDWRVLPK-CSLKVSSLVYNSAETLVNDSTSAVSNDWKIGLKTVTLGVGFGGSHSKESTFAMQKSKEDRYTFVRHSVDCTLYNYRMTSSPPLSQDFKSAVNSLPSNYRSLIDTYGTHFITQVSLGGQIKAITSVKTCQASMQGLSSTEVANCLFVEASARYQYCKSKKQKLGFGQSFSGTFHERSADVIGGDDILFNGWQQSLQTLPDVVKYSIDPLHTLLPIDSARAGLKQEVEKYIVDNAVLKCDSNSNIQHNCCPAGKGLATLKVFKLYADGLYGDKWTQTDGSVEVRYGDQTKRTAIISNNDYPRWTETFQFASINKLQFTVYDLLGECSFGLRKGKHRDSCMFDYGTFFFSYEVECAPSLSGDECQDYIPS
	Gasterosteus_aculeatus_PRF1.3   VRFIGSPQQCAKAR-FVPGYNLGGEGFDIVKMERKGAYVIDTETCRLFNNNFMKGRQKVPAAVVDWRVLPK-CSLKVSSLVYNSAETLVNDSTSAVSNDWKVDLTSVTLGVGLGGSHSKESTFAMQKSKEDRYTFVRHSVDCTLYNYRMTSNPPLSQDFKSAVNSLPLKYRSLIDTYGTHFITQVSLGGKIKAITSVKTCQASMQGLSSTDVADCLSVEASAMFNHCESEKKKLGSSQSFSGTFRERSADVIGGDDILFNGWQRSLQSLPDVVKYSIKSLHTLLPIGAARAGLKQEEEKYIVDNAVLKCNSNSNIKHNCCPAGKGFATLKVFRLYADGLYGDKWTQTDGSVEVRYGDQTKRTAIISNNDYPRWSETFQFGNINKLQFTVYDSLGKCSFGLHKGKHRDSCMFDYGTFFFSYEVECAPSLSGDECQDYIPS
	Gasterosteus_aculeatus_PRF1.4   VRFIGSPQQCAKAR-FVPGYNLGGEGFDIVKMERKGAYVIDTETCRMFNNNFMKGSQKVPAAVVDWRVLPK-CSLKVSSLVYNSAETLVNDSTSAVSNDWKVDLTSVTLGVGLGGSHSKESTFAMQKSKEDHYTFVRHSVDCTLYNYRMTSNPPLSQDFKSAVNSLPLEYRSLIDTYGTHFITQVSLGGKIKAITSVKTCQASMQGLSSTDVADCLSVEASAMFNHCESEKKKLGSSQSFSGTFRERSADVIGGDDILFNGWQRSLQSLPDVVKYSIKSLHTLLPIGAARAGLKQEEEKYIVDNAVLKCNSNSNIKHNCCPAGKGFATLKVFKLYANGLYGDTCTRTDGSVEVRYGDQTKRTAIIRNNDYPRWSETFQFGNINKLQFTVYDRLGKCSFGLLKGKHINSCMFNYGTFFFSYEVECAPSLSGDECQDYIPS
	Gasterosteus_aculeatus_PRF1.5   GCRVGSGAECEKAP-FVPGHNLAGEGFDVVRMRRTGAYVINVKTCTLCPNRFQEGVQRLPAAVLDWRPLSR-CSKQLSSALHHSVDSLLRSSNSLVNNNWGMGLSENIGKALLGGSRSDLAKFARSQHSVDKATFATHEISCTYYSYRLADHPQLSAEFLKHLKRLPALYRRLIDTYGTHYIHQVHLGGKVRRITAFRTCLATLKGFSESDIKNCLNFELRSFSNKCEDLLKGN-MSMGFYQGFMTHKIEVIGGEDILYQEWMSSLHENPDVVSYAIFPLHHLVEDSRVSANLKSTITEYIKDNQLQECSPTPNLDHNCCPLRAGRGTLGLEIHRAAGLRADSITKTDAYVKIFYNGVYEETETVMNDNDPLWNVTYDFGSVQALRFEVWDVAGRCVVFPERGTHALSCQLSKGVLYFTYTVKCDAHLTGYRCGRYSPN
	Gasterosteus_aculeatus_PRF1.6   VPFLGSPQQCEKAR-FVPGYNLGGEGFDIVKMERKGAYVIDTETCRMYNNNFMNGSQKVPAAVLDWRVLPK-CSLKVSSLVYNSAETLVNDSTSAVSNDWKIGLKTVTLGVGFGGSHSKESTFAMQKSKEDRYTFVRHSVDCTLYNYRMTTNPPLSQDFKSAVNSLPSNYRSLIDTYGTHFITQVSLGGQIKAITSVKTCQASMQGLSSTEVANCLFVEASARYQHCKSKKKKLGFGQSFSGTFHERSADVIGGDDILFNGWQQSLQTLPDVVKYSIDPLHTLLPIDSARAGLKQEVEKYIVDNAVLKCDSNSNIQHNCCPAGKGLATLKVFKLYADGLYGDKWTQTDGSVEVRYGDQTKRTAIISNNDYPRWTETFQFASINKLQFTVYDLLGECSFGLRKGKHRDSCMFDYGTFFFSYEVECAPSLSGDECQDYIPS
	Carassius_auratus_PRF1.1        SCFLGKEAECQDAD-FVPGSDLAGEGFDITKMQHLGTFVIDMSTCNLCKNPFMQKKQKLPVSVIYWRATQK-CKRSLSSSVYESSESLVSSSTSSIENNWKVGLGVSKISLMMAGTNSKLAEYSMAKTKKDTFSFIKQSTSCEYYRYSISSRASLHHELSNEFTSLPESYLSLVEKFGTHYIVQVKLGGAVQSVTSVRNCIATLQDLSIDEVKTCLDVEVSTAARHCKQSKDKKLSKHSFANNFSDRLTEITGGHALLFSDWLATVPEKPDVISFKLKPLHMLLPVKPKYKQLRRAIRDYILQRALMKCHNIAGVKANCCPAQRGLAQISVTVMKATGLWGDYFSQTDGYVKVLRNQFLGETPVIWNQNSPTWNWKFGLDSFGGLRLEVWDLLGACNIQLKAGVKSNFCRLNHGLLYYKTSVTCAPSLAGSSCTEYVSS
	Carassius_auratus_PRF1.2        CCETVPSTECEKPS-FVPGHNLVGEGFDIVQMKTTGAFVVDVRNCTVCENKLLNEKQKLPASVVDWRVKVQ-CRRSVGAKIYESASSVLKDTTNSASASWKIGLSPMAGGVAVGGTHSKSARFAKSHASQDKYSFTSHTFSCRYYSFRLHARPPVTKEFLGSITALPGAYNHFISIYGTHFLRRVDLGGRVHSTTAVKTCQVSMKGLSVHDVSNCLSAEASAQAGYCKGKSQKLERGNSFSGTFSDRVTEILGGNDILFSPWLKSLKKIPGVVSYTLSSLHMLVKNDARRASLQAAISKYITKSAISTCSGHQRIDSNCCPSNPGVATLTVTVLSGAGLWGDYFSKTDGYVKVFYGSRAYETPVIWNNNFPQWNYNINFETVTPLRFEVWDLLGKSSTVPQKGMNQKKFKLKHGSFLISYSAQCGPSLTGSFCEKYAPT
	Carassius_auratus_PRF1.3        EGDIGSSKECKNAP-FVPGHNLAGEGFDIVTMERKGSYVIDTETCKLHKNTFMNGKQKLPAAVVDWRPLPK-CSMKVSSQIYESSEALVKESSSAVSAGWNIGLDVYAGGYVVGSTHSSESKFAMQKSKEDKYSFTKHEVECSFYRYRVAAKPPLQAEFLEAVKSLPVAYRNLISTYGTHYTTSVKLGGEMKAITAIKSCQAAMMGLTDTAVKDCLDVEASSKTNLCEKLKRKMHTSVKFSSMFSERQMEIIGGEDLLFSGWVKSLKSLPDVLHYSLKPLHFLLSAKPARKGLKKAVEKYITENALKKCESSQMITSNCCPAAKGLATLKVYSLRARGLYGDKFTQTDGTVTVTYDGKYMRTQTINNNDNPSWPETFYFGPIKKITFAVYDFLGSCSFYLRSGVVRDACAFTYGTFYFNYKVECAPSLQGHKCDEYRPS
	Ctenopharyngodon_idella_PRF1.1  ACFRGKEAECQDAD-FAPGSDLAGEGFDITKMQRLGTFVIDMSTCNLCKNPFMNNKQKLPLSVVYWRATQK-CSMSLSSSIYESSESLVSSSTSSVENNWKAGLGMNKMSLMFAGTNSRLAVYSMRKTKKDKYSFIKQSASCGYYSYRISSHSPIHQELNLDFTNLPESYLSLVEKFGTHYIVQVKLGGAVQSVTSVQQCEASLQDLSTDEVKTCLDVEASTAYRHCKQTEDKKLSKHSFAHRFSDRLTEITGGHALLFSAWLSSVPGKPDVISFSLKPLHMLMPVKPKYGQLRRAIRDYILQRALWKCHNSPGVKANCCPTQRGIAQITVIVKKATGLWGDYFTQTDGYVKVLRNHFLGETPVIWNRNSPTWNWKFDLGSFGGLRLEVWDLLGACNIQLNNGKKSNFCSLNHGMLYYKTSVTCGPSLTGSLCTEYVGF
	Ctenopharyngodon_idella_PRF1.2  SCAKGKPNECAEAS-FAPGSNLAGEGYDVTKMQRKGAFVINTDSCTLCTNPYMDRKQRLPISVVDWRPSQK-CNIKISSSLYQSSEDLVSSSTSSIENNWAANLGKNSGSFMVAGTNSKLAEYSMEKTKKDKFNFASQSISCAFYSYRVSNKPVLHPEFKRSVKELPPRFYKFINTYGTHYITKVTLGGSVQSVTSIRQCETALQGLSVDEVKTCLDVEASAETKHCNEDKDKTEHKSSFSSRFNDRLTDIIGGHELLFSGWLASLPQNPDVISYSLESLHELISSKPVRKHLRQAIHDYILEKSLWRCHNNPGITPDCCPSQRGLSRVKVTIVRAQGLWGDQTTATDGYVKVFDKHQVGRTDMITNNNSPYWGRTFDLGDVEKMKLEVWDLLGTCEVPIKAGQNDNFCNLNHGVLFYKTEVTCAPSLSGTYCSKYVGS
	Danio_rerio_PRF1.3              GCESVASTECEKLP-FVPGHNLVGEGFNIVQMKTTGAFVVDVRNCTACDNKLLNQKQKLPVSVIDWRIKVQ-CRRSLSAKVYESASSVMEDTTSAASLSWKVGLSPMVAGVAVGGTHSKSARFARSHASKDKFSYTSHTFSCRYYSFRLHARPPLTKEFAGSISSLPSAYNHFISIYGTHFLRRVDLGGRVKSTTAVRTCQVSMKGLSANDVSNCLSAEASGQTAYCKSKQKQLERANSFSATFSDRVTDILGGNDILFTPWLGSLKKIPGVVSYTLSSLHMLVRNDARRSSLQQAISKYITKYAISTCNGHVNVNSNCCPNKPGVATLTVTVVSAAGLWGDVFSKTDGYVKVFYGSHTAQTPVIWNNNFPQWNFRAEFGTVASLQFQVWDLLGKGAVVPEKGVNVPKFGFKHGSLMISYSATCGPSLQGSFCEIYAPT
	Danio_rerio_PRF1.1              SCTKGKPKECEEAT-FAPGSNLAGEGYDVIKMQRKGAFVINTDSCTLCKNPYMDGLQKLPLSVVDWRTSQK-CTVKVSSSLYHSSEDLVSSSASSIENNWGASLGKTTGSIVLAGSKSKLAEYSMEKTKKDKFNFASQSISCAYYSYRVSNKPVLHPEFKRSVKELPPRFYKFINTFGTHYITKVTLGGNVHSVTSIRQCETALQGLSTDEVKACLDLEANAESKHCSQNQDKTESKTSFSSRFNDRLTEVTGGHELLFSGWLASLPQNPDVISHSLESLHELIPTKPVRKHMRQAIHDYILENSLWRCHNKPGITPDCCPSKRGLSRVQVTVVKAQDLWGDTTTATDGYVKVFDKNKIGSTNMIPNNNSPYWGQTFDLGDVDNIKLEVWDLLGTCQVAIKVQSQTYNCSLNHGLLYYNTKVTCAPGLAGTYCEKYVGS
	Danio_rerio_PRF1.4              ACFLGKQAECQDAS-FVPGSDLAGEGFDITKMQRLGTFVFDMSTCNLCKNPFMQNKQKLPVSAVYWRASQK-CTMSLSSSVYESSESLVSSSTSSIENNWKTGLGLSKVSLMVAGTNSRLSDYSMSKTKKDKFSFIKQSASCVYYSYRIASSAPLHHELRDDFSNLPESYLSLVEKFGTHYIIQVKLGGGVQSVTSVKQCMATLQDLSVDEVKTCLDVEASTAYRHCKQSQDKKLSAHSFANSFSDRLTEITGGHALLFSAWLSSVPQQPDVISFSLKPLHMLMPAKPKRDQLRRAIHDYVLQKALLKCHNNPAVKANCCPAQRGIAQITVTVMRATGLFGDYFTWTDGYVKVFRNQFLGETPVIWNQNSPKWNWRFDLGSFGGLKLEVWDLLGTCNIQLKAGVKNDFCRLNHGLLYFKTSVTCGPSLAGSSCTEYVGS
	Danio_rerio_PRF1.2              EVEIGTSKECENAH-FVPGYNLAGEGFDVVTLERKGTYVINTETCNMRTNQYMNGKQKLPAAVDFWRTLPK-CSMKVSSQIFESSEAVVEESSSAISGNWKADLSVQLSGATVGGTHSREAKFAMQKSKQDKYSFTKHQVECNFYRYHVVQKPPLHAEFLQAIKLLPFAYRSLISTYGTHYTTSVMLGGHMKAITAIKTCEASIGGLSDTAIKDCLDVEASAEARLCRELKQKLGTNLKMSSKFSERQTEIIGGNDLLFSGWLESLKSVPDVVQYTLKPLHFLLSEKPARKGLKKAVEEYITENALRNCESSKIMKSNCCPTEKGLATLKVYNLRANGLFGDTLTQTDGYVEIKHQGQNKRTQTIVDNDNPRWSETFNFGHISTLTLEVYDHLGTCSVKVSSGVVNDGCALDHGTLFFSYEVKCAPSLQGRHCDEHKPS
	Danio_rerio_PRF1.6              ACHTGSQAECEKAP-FVPGYNLAGEGFDLVKMRRKGAFLINVKTCTICKNRFHGDMQKLPSAVLDWRIFST--TAQPSTALHHSVDSLMKSSTSLINNNWKVDLRDDTGKVIFGGSRSDIAQFAHSQSAKDKTTFALHEISCTYYSYRLRDHPELSTEFSKHLQTLPHLYQKMIETYGTHYIRQVHLGGRVRWVTAFRTCLATLKGFSEIDIKHCLNMDFMSFSNKCSKILVEE-MGMGFYQTFMTHKTEVLGGEELVLNQWRKSLHDNPDVISYAIFPLHHLVADPEVSANLKRAVTQYIEENAISICSKMSNLDQNCCPLRAGRGTLVVFMMGATGMNEDYFSSSDGYVKAWYNGIYKETEVILDNNDPDWNTNFNFGSVHQLKFEVWDFVGECVISPESGMHIHRCKLQRGFFYFIYRALCDDHLTGPRCSRYSPE
	Danio_rerio_PRF1.5              ACHTGSQTECEKAP-FVPGYNLAGEGFDVVKMRRKGAFLINVKTCTICKNRFQGGMQKLPSAVLDWRPFSR-CSKQLSSALHHSVDSLMKSSTSLVNNNWEMDLSDDMGKVIFGGSRSDIAQFAHSQNTMDKATFALHEISCTYYSYRITDNPELSAEFSKHLQKLPPLYRRTIETYGTHYIRQVHLGGRVRRVTAFRTCLATLKGFSETDIKNCLNVELKSLSNKCSQILKDN-LSMGFYQGFMTHKTEVLGGEDLVLSQWMMSLHNNPDVISYAIFPLHHLVADPEVSSNLKIAVTEYIEENMISVCSQTPNLDHNCCPMRAGRGTLIVLVQRAAGLKADLFTRTDGYVKVWYNFMYEETEVVMDNNDPEWNISYDLGSVHELIFEVWDMVGRCVVSPERGIHSHSCKLKRGVLYFTYKASCDAHLTGPRCSRYSPK
	Danio_rerio_PRF1.7              EVEIGTLKECENAH-FVPGYNLAGEGFDVVTLERKGTYVINTETCNMRTNQYMNGKQKLPAAVDFWRTLPK-CSMKVSGQIFESSEAVVEESSSAISGDWKADLSVKLSGATVGGTHSREAKFAMQKSKRDKYSFTKHQVECNFYRYHVVQKPPLHAEFLQAIKLLPFAYRSLISTYGTHYTTSVMLGGHMKAITAIKTCEASIGGLSDTAIKDCLDVEASAEARLCRELKQKLGTNLKMSSKFSERQTEIIGGKDLLFSGWLESLKSVPDVVQYTLKPLHFLLSDKPARKGLKKAVEEYIIENALRKCESSRIMKTNCCPTEKGLATLKVYNLRANGLYGDTWTQTDGYVEVRHQGQNKRTQIIDDNDNPRWSESFNFGHISTLTFEVYDHLGTCSVKVSSGVVNDGCALNHGTLFFSYEVKCAPSLQGPQCDEHKPS
	Danio_rerio_PRF1.8              EDEIGTSKECEDAP-FVPRYNLAGEGFDVVTLERKGTYVINMETCALVENDYLPGKQKLPVAVKFWRTLPK-CSMKVSSQIFESSEAVVNDSSSALSASWKVGIDVKAVGAAVGSTHSREAKFAMTKSKEDKYSFTKHQVECSFYRYNVAENPPLHAEFLEAIKSLPDAYRSLIYTYGTHYTTNVKLGGQIKAITAIKTCQAAVSGLTDTAIKDCLDVEASAEAHFCKEQQKKMGTNQKFSSMFSERQTDIIGGNHLLFSGWLESLKSLPDVVQYSLKPLHFLLSAKPARKGLKKAVEEYIIENALMKCESSQVIKSNCCPAENGLATLKVYNLRANGLYGDVRTQTDGTVLVKYGKTIKRTETIDNNDNPRWRDTFDFGPVERLCFEVYDLLGKCSFKLRSGVVTDACVFNYGTFFFTYEVKCAPSLQGPQCNEHKPS

;


END;

BEGIN ASSUMPTIONS;
	TYPESET * UNTITLED   =  unord:  1 -  439;

END;

BEGIN TREES;
	Title 'Trees from "Fish-PRF.tre"';
	LINK Taxa = Taxa;
	TRANSLATE
		1 Homo_sapiens_PRF1,
		2 Oncorhynchus_mykiss_PRF1,
		3 Salmo_salar_PRF1.1,
		4 Salmo_salar_PRF1.2,
		5 Paralichthys_olivaceus_PRF1,
		6 Takifugu_rubripes_PRF1.5,
		7 Takifugu_rubripes_PRF1.1,
		8 Takifugu_rubripes_PRF1.2,
		9 Takifugu_rubripes_PRF1.6,
		10 Takifugu_rubripes_PRF1.3,
		11 Tetraodon_nigroviridis_PRF1.1,
		12 Tetraodon_nigroviridis_PRF1.3,
		13 Tetraodon_nigroviridis_PRF1.2,
		14 Oryzias_latipes_PRF1.1,
		15 Oryzias_latipes_PRF1.3,
		16 Oryzias_latipes_PRF1.4,
		17 Oryzias_latipes_PRF1.6,
		18 Oryzias_latipes_PRF1.5,
		19 Oryzias_latipes_PRF1.2,
		20 Oryzias_latipes_PRF1.8,
		21 Gasterosteus_aculeatus_PRF1.1,
		22 Gasterosteus_aculeatus_PRF1.2,
		23 Gasterosteus_aculeatus_PRF1.3,
		24 Gasterosteus_aculeatus_PRF1.4,
		25 Gasterosteus_aculeatus_PRF1.5,
		26 Gasterosteus_aculeatus_PRF1.6,
		27 Carassius_auratus_PRF1.1,
		28 Carassius_auratus_PRF1.2,
		29 Carassius_auratus_PRF1.3,
		30 Ctenopharyngodon_idella_PRF1.1,
		31 Ctenopharyngodon_idella_PRF1.2,
		32 Danio_rerio_PRF1.3,
		33 Danio_rerio_PRF1.1,
		34 Danio_rerio_PRF1.4,
		35 Danio_rerio_PRF1.2,
		36 Danio_rerio_PRF1.6,
		37 Danio_rerio_PRF1.5,
		38 Danio_rerio_PRF1.7,
		39 Danio_rerio_PRF1.8;
	TREE con_50_majrule = (1:0.6626942933864676,((8:0.08258784466321331,13:0.1488641388216855):0.1969655701555195,(28:0.09260873919857768,32:0.1166525376346088):0.163784794656962):0.3281091423651014,(((((((2:0.00924893192755477,3:0.01790697469767223):0.1260723154149515,(5:0.14427142165327,(7:0.1072008752643791,11:0.08423101197375922):0.075922983787833,((14:0.03888986842683067,(15:0.03419268701758844,(19:0.01682082865975611,20:0.09055174182300267):0.01601830495819306):0.03998380637428604):0.2983964551802992,21:0.1713076667228827):0.03917926079364852,16:0.1830388420795712):0.09104855353449495):0.1170067723015182,(31:0.05014163455663785,33:0.1376402610337383):0.1712225311784087):0.0828166225528686,((27:0.08229584509066387,30:0.09663365435355237):0.02819026396526028,34:0.07189478825122492):0.2831200573164713):0.2204257864954498,4:0.4198084513896531):0.1057245310955607,((10:0.1991567994011548,((22:0.0073874059808071,26:0.005403773964394711):0.04266988387053104,(23:0.002516376831958509,24:0.02690241491432879):0.04399329650684208):0.1967277746268004):0.1565258446989345,(29:0.1566843267519115,((35:0.02577363090893823,38:0.01960533000517842):0.1378899386984322,39:0.109702433998788):0.07266619721656625):0.1277309819534022):0.2360506144945745):0.06199205483712483,((((6:0.1531266399672572,12:0.03046146967910467):0.04736926756630954,(17:0.07326707106724631,25:0.06391485335604496):0.03105727950926421):0.1097032671285356,(36:0.2164043941250577,37:0.03440182372558809):0.1134551431256161):0.3315043590768512,(9:0.1956283436671671,18:0.1994086365512094):0.4210150683695399):0.2876253131535779):0.1128382009614159);

END;


BEGIN CODONS;
	CODESET * UNTITLED   =  universal:  1 -  439;


END;

BEGIN MESQUITECHARMODELS;
	ProbModelSet * UNTITLED   =  'Mk1 (est.)':  1 -  439;
END;

Begin MESQUITE;
		MESQUITESCRIPTVERSION 2;
		TITLE AUTO;
		tell ProjectCoordinator;
		timeSaved 1329706849984;
		getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa;
		tell It;
			setID 0 3651734317904920357;
		endTell;
		getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters;
		tell It;
			setID 0 3271645835731173514;
			mqVersion 275;
			checksumv 0 3 2606043427 null  getNumChars 439 numChars 439 getNumTaxa 39 numTaxa 39   short false   bits 1048575   states 1048575   sumSquaresStatesOnly 2.19000666431144E14 sumSquares 2.19000666431144E14 longCompressibleToShort false usingShortMatrix false   NumFiles 1 NumMatrices 1;
			mqVersion;
		endTell;
		getWindow;
		tell It;
			suppress;
			setResourcesState false false 326;
			setPopoutState 400;
			setExplanationSize 0;
			setAnnotationSize 0;
			setFontIncAnnot 0;
			setFontIncExp 0;
			setSize 1280 688;
			setLocation -4 -4;
			setFont SanSerif;
			setFontSize 10;
			getToolPalette;
			tell It;
			endTell;
			desuppress;
		endTell;
		getEmployee  #mesquite.minimal.ManageTaxa.ManageTaxa;
		tell It;
			showTaxa #3651734317904920357 #mesquite.lists.TaxonList.TaxonList;
			tell It;
				setTaxa #3651734317904920357;
				getWindow;
				tell It;
					newAssistant  #mesquite.lists.DefaultTaxaOrder.DefaultTaxaOrder;
					newAssistant  #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition;
					getTable;
					tell It;
						rowNamesWidth 276;
					endTell;
					setExplanationSize 30;
					setAnnotationSize 20;
					setFontIncAnnot 0;
					setFontIncExp 0;
					setSize 954 621;
					setLocation -4 -4;
					setFont SanSerif;
					setFontSize 10;
					getToolPalette;
					tell It;
						setTool mesquite.lists.TaxonList.TaxonListWindow.arrow;
					endTell;
				endTell;
				showWindow;
				getEmployee #mesquite.lists.ColorTaxon.ColorTaxon;
				tell It;
					setColor Red;
					removeColor off;
				endTell;
				getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel;
				tell It;
					togglePanel off;
				endTell;
			endTell;
		endTell;
		getEmployee  #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord;
		tell It;
			makeTreeWindow #3651734317904920357  #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker;
			tell It;
				suppressEPCResponse;
				setTreeSource  #mesquite.trees.StoredTrees.StoredTrees;
				tell It;
					setTreeBlock 1;
					toggleUseWeights off;
				endTell;
				setAssignedID 1053.1329706274828.1307838700886482047;
				getTreeWindow;
				tell It;
					setExplanationSize 30;
					setAnnotationSize 20;
					setFontIncAnnot 0;
					setFontIncExp 0;
					setSize 954 621;
					setLocation -4 -4;
					setFont SanSerif;
					setFontSize 10;
					getToolPalette;
					tell It;
						setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.reroot;
					endTell;
					setActive;
					getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator;
				tell It;
					suppress;
					setTreeDrawer  #mesquite.trees.SquareTree.SquareTree;
					tell It;
						setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard;
						tell It;
							branchLengthsToggle on;
							toggleScale on;
							toggleBroadScale off;
							toggleCenter on;
							toggleEven on;
						endTell;
						setEdgeWidth 6;
						orientUp;
						setCornerMode Right_Angle  50;
					endTell;
					setBackground White;
					setBranchColor Black;
					showNodeNumbers off;
					showBranchColors on;
					labelBranchLengths off;
					centerBrLenLabels on;
					showBrLensUnspecified on;
					showBrLenLabelsOnTerminals on;
					setBrLenLabelColor 0 0 255;
					setNumBrLenDecimals 6;
					desuppress;
					getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames;
					tell It;
						setColor Black;
						toggleColorPartition on;
						toggleShadePartition off;
						toggleShowFootnotes on;
						toggleNodeLabels on;
						toggleCenterNodeNames off;
						toggleShowNames on;
						namesAngle ?;
					endTell;
				endTell;
					setTreeNumber 1;
					setTree '(1:0.3313471466932338,(((8:0.08258784466321331,13:0.1488641388216855):0.1969655701555195,(28:0.09260873919857768,32:0.1166525376346088):0.163784794656962):0.3281091423651014,(((9:0.1956283436671671,18:0.1994086365512094):0.4210150683695399,((36:0.2164043941250577,37:0.03440182372558809):0.1134551431256161,((6:0.1531266399672572,12:0.03046146967910467):0.04736926756630954,(17:0.07326707106724631,25:0.06391485335604496):0.03105727950926421):0.1097032671285356):0.3315043590768512):0.2876253131535779,(((29:0.1566843267519115,(39:0.109702433998788,(35:0.02577363090893823,38:0.01960533000517842):0.1378899386984322):0.07266619721656625):0.1277309819534022,(10:0.1991567994011548,((22:0.0073874059808071,26:0.005403773964394711):0.04266988387053104,(23:0.002516376831958509,24:0.02690241491432879):0.04399329650684208):0.1967277746268004):0.1565258446989345):0.2360506144945745,(4:0.4198084513896531,((34:0.07189478825122492,(27:0.08229584509066387,30:0.09663365435355237):0.02819026396526028):0.2831200573164713,((31:0.05014163455663785,33:0.1376402610337383):0.1712225311784087,((2:0.00924893192755477,3:0.01790697469767223):0.1260723154149515,(5:0.14427142165327,16:0.1830388420795712,(7:0.1072008752643791,11:0.08423101197375922):0.075922983787833,(21:0.1713076667228827,(14:0.03888986842683067,(15:0.03419268701758844,(19:0.01682082865975611,20:0.09055174182300267):0.01601830495819306):0.03998380637428604):0.2983964551802992):0.03917926079364852):0.09104855353449495):0.1170067723015182):0.0828166225528686):0.2204257864954498):0.1057245310955607):0.06199205483712483):0.1128382009614159):0.3313471466932338);';
					setDrawingSizeMode 0;
					toggleLegendFloat on;
					scale 0;
					toggleTextOnTree off;
					showWindow;
				endTell;
				desuppressEPCResponse;
				getEmployee #mesquite.trees.ColorBranches.ColorBranches;
				tell It;
					setColor Red;
					removeColor off;
				endTell;
				getEmployee #mesquite.ornamental.BranchNotes.BranchNotes;
				tell It;
					setAlwaysOn off;
				endTell;
				getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition;
				tell It;
					colorByPartition off;
				endTell;
				getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles;
				tell It;
					setOn on;
					setDigits 4;
					writeAsPercentage off;
					toggleCentred on;
					toggleHorizontal on;
					toggleWhiteEdges on;
					setFontSize 10;
					setOffset 0  0;
				endTell;
				getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings;
				tell It;
					setOn on;
					toggleCentred on;
					toggleHorizontal on;
					setFontSize 10;
					setOffset 0  0;
				endTell;
				getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues;
				tell It;
					panelOpen false;
				endTell;
			endTell;
		endTell;
		getEmployee  #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord;
		tell It;
			showDataWindow #3271645835731173514 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker;
			tell It;
				getWindow;
				tell It;
					setExplanationSize 30;
					setAnnotationSize 20;
					setFontIncAnnot 0;
					setFontIncExp 0;
					setSize 954 621;
					setLocation -4 -4;
					setFont SanSerif;
					setFontSize 10;
					getToolPalette;
					tell It;
					endTell;
					setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow;
					colorCells  #mesquite.charMatrices.ColorByState.ColorByState;
				tell It;
					setStateLimit 9;
					toggleUniformMaximum on;
				endTell;
					colorRowNames  #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor;
					colorColumnNames  #mesquite.charMatrices.CharGroupColor.CharGroupColor;
					colorText  #mesquite.charMatrices.NoColor.NoColor;
					setBackground White;
					toggleShowNames on;
					toggleShowTaxonNames on;
					toggleTight off;
					toggleThinRows off;
					toggleShowChanges off;
					toggleSeparateLines off;
					toggleShowStates on;
					toggleAutoWCharNames off;
					toggleAutoTaxonNames off;
					toggleShowDefaultCharNames off;
					toggleConstrainCW on;
					toggleBirdsEye off;
					toggleShowPaleGrid off;
					toggleShowPaleCellColors off;
					togglePaleInapplicable on;
					toggleShowBoldCellText off;
					toggleAllowAutosize off;
					toggleColorsPanel off;
					toggleLinkedScrolling on;
					toggleScrollLinkedTables off;
				endTell;
				showWindow;
				getWindow;
				tell It;
					forceAutosize;
				endTell;
				getEmployee #mesquite.charMatrices.ColorCells.ColorCells;
				tell It;
					setColor Red;
					removeColor off;
				endTell;
				getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip;
				tell It;
					showStrip off;
				endTell;
				getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel;
				tell It;
					togglePanel off;
				endTell;
				getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip;
				tell It;
					showStrip off;
				endTell;
				getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector;
				tell It;
					autotabOff;
				endTell;
				getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip;
				tell It;
					showStrip off;
				endTell;
				getEmployee #mesquite.align.AlignToDropped.AlignToDropped;
				tell It;
					gapCosts 8 3 2 2;
					subCosts  5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5;
				endTell;
				getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor;
				tell It;
					panelOpen false;
				endTell;
			endTell;
		endTell;
		endTell;
end;