#NEXUS [written Mon Mar 05 09:32:07 EST 2012 by Mesquite version 2.75 (build 566) at Simba.local/10.0.1.13] BEGIN TAXA; TITLE Serdia_Elsiella; DIMENSIONS NTAX=22; TAXLABELS Tibilis Neotibilis Similliserdia Serdia_concolor Serdia_indistincta Serdia_beckerae Serdia_quadridens Serdia_delphis Serdia_ruckesi Serdia_bihamulata Serdia_rotundicornis Serdia_limbatipennis Serdia_bicolor Serdia_inspersipes Serdia_robusta Serdia_apicicornis Serdia_maxima Serdia_lobata Serdia_costalis Serdia_calligera Serdia_maculata Elsiella_plana ; END; BEGIN CHARACTERS; TITLE Morphology; DIMENSIONS NCHAR=40; FORMAT DATATYPE = STANDARD GAP = - MISSING = ? SYMBOLS = " 0 1 2 3"; CHARSTATELABELS 1 Head_before_eyes / triangular quadrangular, 2 Apex_of_juga_before_clypeus / slightly_overlapping juxtaposed, 3 Second_antennal_segment / '1/2 (or more) of third segments length' '1/3 (or less) of third segments length', 4 Longitudinal_dorsal_sulcus_of_the_third_antennal_segment / absent present_, 5 Fourth_antennal_segment / cylindrical flattened, 6 First_segment_of_rostrum / not_entirely_contained_in_bucculae entirely_contained_in_bucculae, 7 Anterolateral_margins_of_pronotum / smooth crenulated, 8 Humeral_angles / not_produced produced, 9 Callus_behind_the_fovea_of_scutellar_basal_angles / absent present, 10 Margins_of_scutellar_apex / not_reflected reflected, 11 Scutellar_apex / without_black_maculae with_black_maculae, 12 Peritreme / not_in_a_spout in_a_spout, 13 Black_spots_on_connexival_segments / absent present_, 14 Median_spine_on_third_abdominal_segment / acute_angle right_or_obtuse_angle, 15 Ventral_abdominal_calloused_maculae / absent present, 16 Black_spots_on_median_seventh_urosternites_in_male / absent present, 17 Body_shape / round oblong, 18 Bristles_on_ventral_wall_near_to_posterolateral_angles_of_pygophore / absent present, 19 Apical_processes_of_dorsal_rim_of_pygophore / absent present, 20 Median_third_processes_of_dorsal_rim_of_pygophore / absent present, 21 Superior_processes_of_dorsal_rim_of_pygophore / absent present, 22 Ventral_rim_of_pygophore / not_dorsally_projected dorsally_projected, 23 Superior_ridge_of_ventral_rim_of_pygophore / without_projection with_1_projection 'with 1+1 projections', 24 Dorsal_rim_of_pygophore / without_grooves with_grooves, 25 Parameres / 'Pattern 1, small parameres, subquadrangular with one or two finger like projections facing the same direction' 'Pattern 2, thin parameres with a long and curved projection' 'Pattern 3, longer, subcylindrical parameres with one or two projections facing each other or in opposite directions' 'Pattern 4, thicker parameres, laterally depressed with a perpendicular projection in its apex', 26 Lateral_expansions_of_phallotheca / present absent, 27 Opening_of_phallotheca / posterior dorsal, 28 Vesica / long_tube short_tube_or_obsolete, 29 Vesica_processes / 'flat, expanded' subcylindrical, 30 Ductus_seminis_distalis_opening / circular_or_oblong bifid_or_in_a_spout, 31 Posterior_margins_of_laterotergites_8 / almost_straight__with_a_small_spine 'acute, posteriorly projected', 32 Laterotergites_9 / reaching_or_slightly_surpassing_the_dorsal_band_uniting_laterotergites_8 well_surpassing_the_dorsal_band, 33 Apex_of_laterotergites_9 / ogival truncate, 34 Maximum_length_of_gonocoxites_8 / with_double_the_size_of_laterotergites_9 subequal_to_laterotergites_9, 35 Lateral_angles_of_gonocoxites_8 / without_spine with_spine, 36 Chitinellipsen_placement_in_relation_to_the_thickening_of_the_vaginal_intima / lateral posterior, 37 Thickening_of_the_vaginal_intima / anteriorly_projected ventrally_projected, 38 Thickening_of_the_vaginal_intima / partially_sclerotized entirely_sclerotized, 39 Pars_intermedialis / thin globose, 40 Capsula_seminalis / globose ogival ; MATRIX Tibilis 0100000000000000100000000100001101000000 Neotibilis 0000000010000000000000000000000000000000 Similliserdia 0010010000010000010000200010000000000000 Serdia_concolor 0010010000110000001011100010000000011100 Serdia_indistincta 0010010000110000001011100010000000011100 Serdia_beckerae 0110010000110000010110201111111101001000 Serdia_quadridens 0110011000110000110110201111111101001000 Serdia_delphis 01100100000100001101102011111111010????? Serdia_ruckesi 0110010000010000110110001111111101001000 Serdia_bihamulata 0110110000110000000011202111010001001000 Serdia_rotundicornis 0110110100110000100010012111010000001011 Serdia_limbatipennis 0110110000110100100111012111010001001010 Serdia_bicolor 0111011000110100100110012111010001001010 Serdia_inspersipes 0110011001110100000110012111000000001010 Serdia_robusta 0110011001110100000110012?????0000001010 Serdia_apicicornis 0110011101111101100010010111010001001011 Serdia_maxima 0110011101111101100110012111011101001011 Serdia_lobata 0111111101110100100010012111011101001010 Serdia_costalis 1011110011110010100110013?????11010????? Serdia_calligera 1011110011110010001110013111011111101010 Serdia_maculata 1011110011110010101110013111011111101010 Elsiella_plana 010000000001010?100001201?????00010????? ; END; BEGIN TREES; Title Results; LINK Taxa = Serdia_Elsiella; TRANSLATE 1 Tibilis, 2 Neotibilis, 3 Similliserdia, 4 Serdia_concolor, 5 Serdia_indistincta, 6 Serdia_beckerae, 7 Serdia_quadridens, 8 Serdia_delphis, 9 Serdia_ruckesi, 10 Serdia_bihamulata, 11 Serdia_rotundicornis, 12 Serdia_limbatipennis, 13 Serdia_bicolor, 14 Serdia_inspersipes, 15 Serdia_robusta, 16 Serdia_apicicornis, 17 Serdia_maxima, 18 Serdia_lobata, 19 Serdia_costalis, 20 Serdia_calligera, 21 Serdia_maculata, 22 Elsiella_plana; TREE Imported_tree_1 = (1,(22,(2,(3,((4,5),((6,(7,(8,9))),(10,(11,((18,(19,(20,21))),(12,(13,((14,15),(16,17))))))))))))); TREE Imported_tree_2 = (1,(22,(2,(3,((4,5),((6,(7,(8,9))),(10,(11,(12,((18,(19,(20,21))),((16,17),(13,(14,15))))))))))))); TREE Imported_tree_3 = (1,(22,(2,(3,((4,5),((6,(7,(8,9))),(10,(11,(12,(13,((18,(19,(20,21))),((14,15),(16,17))))))))))))); TREE Imported_tree_4 = (1,(22,(2,(3,((4,5),((6,(7,(8,9))),(10,(11,(12,((13,(18,(19,(20,21)))),((14,15),(16,17)))))))))))); TREE Imported_tree_5 = (1,(22,(2,(3,((4,5),((6,(7,(8,9))),(10,(11,((13,((14,15),(16,17))),(12,(18,(19,(20,21))))))))))))); TREE Imported_tree_6 = (1,(22,(2,(3,((4,5),((6,(7,(8,9))),(10,(11,(12,((18,(19,(20,21))),(13,((14,15),(16,17))))))))))))); TREE Imported_tree_7 = (1,(22,(2,(3,((4,5),((6,(7,(8,9))),(10,((18,(19,(20,21))),(11,(12,(13,((14,15),(16,17))))))))))))); TREE Consensus = (1,(22,(2,(3,((4,5),((6,(7,(8,9))),(10,(11,12,13,(14,15),(16,17),(18,(19,(20,21))))))))))); END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Mk1 (est.)': 1 - 40; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 40; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1330957927646; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 4143763571128064664; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 6635015387830730345; mqVersion 275; checksumv 0 3 162624214 null getNumChars 40 numChars 40 getNumTaxa 22 numTaxa 22 short true bits 15 states 15 sumSquaresStatesOnly 2304.0 sumSquares 2304.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 250; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1204 631; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #6635015387830730345 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 954 564; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.NoColor.NoColor; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges on; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames on; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize on; toggleColorsPanel off; toggleDiagonal on; setDiagonalHeight 80; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesEditor.StateNamesEditor; tell It; makeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 954 564; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; rowsAreCharacters on; toggleConstrainChar on; toggleConstrainCharNum 3; togglePanel off; toggleSummaryPanel off; endTell; showWindow; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.categ.SmallStateNamesEditor.SmallStateNamesEditor; tell It; panelOpen true; endTell; endTell; endTell; endTell; end;