#NEXUS [written Tue Aug 21 10:33:16 CEST 2012 by Mesquite version 2.75 (build 566) at 1x-193-157-241-103.uio.no/193.157.241.103] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=26; TAXLABELS Adenoides_eludens Alexandrium_frundyense Alexandrium_minutum Amphidinium_carterae Azadinium_spinosum Crypthecodinium_cohnii Cryptosporidium_parvum Eimeria_tenella Gymnodinium_aureolum Gymnodinium_beii Heterocapsa_triquetra Karenia_brevis Karlodinium_veneficum Lepididinium_chlorophorum Lingulodinium_polyedrum Oxyrrhis_marina Pentapharsodinium_dalei Perkinsus_marinus Polarella_glacialis Prorocentrum_minimum Protodinium_simplex Scrippsiella_trochideae Symbiodinium_sp_C3 Thecadinium_kofoidii Theileria_parva Toxoplasma_gondii ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=1263; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Adenoides_eludens ATGCGTGAGCTCGTGCATATCCAGGCCGGCCAGTGCGGCAACCAGATCGGCGCCAAGTTCTGGGAAGTGATCTCTGACGAGCACGGCATCGATCCCACGGGCACCTACCATGGCGATTCGGACTTGCAGCTCGAGCGCATCAACGTTTACTTTAACGAAGCGACGGGCGGTCGGTACGTCCCGCGAGCAGTCCTGATGGACTTGGAGCCCGGCACAATGGACAGCGTCCGTGCTGGACCCTTTGGGCAGCTGTTCCGACCGGACAACTTTGTCTTTGGCCAGACAGGCGCGGGGAACAACTGGGCTAAGGGCCATTACACAGAGGGCGCCGAGCTCATCGACAGCGTCTTGGACGTTGTGCGCAAGGAGGCGGAAGGCTGCGACTGCTTGCAGGGGTTCCAGATGTGCCATTCTCTGGGCGGCGGTACCGGATCAGGCATGGGCACGCTTCTCATCTCCAAGGTGCGGGAGGAATATCCGGACCGCATCATGGAAACCTTCTCGGTGATCCCCTCGCCCAAGGTATCGGACACGGTGGTCGAGCCGTACAATGCAGTGCTCTCTTTTCACCAGCTTGTTGAGAACGCCGATGAATGCTTCCTGCTTGACAACGAGGCACTCTACGACATCTGCTTCCGCACGTTGAAGTTGACGACGCCGACGTATGGAGACCTGAACCATTTGGTATCAGCTGCAATGAGCGGCGTGACCACATGCTTGCGCTTCCCGGGGCAGTTGAATTGCGACCTCCGCAAGATCGCAGTGAACCTTATCCCCTTCCCGCGCTTGCACTTCTTCATGACGGGCTTTGCACCGCTTACGTCGCGTGGCTCCCAGCAGTACCGTGCCCTGACCGTGCCTGAGCTCACCCAGCAGATGTTCGATGCCAAGAACATGATGTGCGCAGCCGACCCGCGCCACGGCCGCTACCTCACGGCAGCGGCGCTCTTCCGCGGCCGCATGTCAACGAAGGAGGTGGATGAGCAGATGCTGAACGTGCAGAACAAGAACTCCTCTTACTTCGTTGAATGGATCCCGAACAACATCAAGGCCTCTGTCTGCGACATCCCGCCGAAGGGGCTCAAGATGGCAGTTGCCTTCgCGGGGAACTCTACCGCTATTCAGGAGATGTTCAAGCGAGTGTCCgAGTACtTCAcgGCGATGTTCCGCCGCaAGGCCCTCCTTCaCTGgTACACCGgAGAgGGTATGgACgACATGGAGTTCacgGAgGCCGAAaGCaACATgAACGACCTgGTcTCCgag Alexandrium_frundyense ATGCGCGAGCTCGTCCATGTCCAGGCTGGCCAGTGCGGCAACCAGATTGGAGCAAAGTTCTGGGAGGTCATCTCAGATGAACACGGCATCGATCCCACGGGCACTTACCACGGCGACTCTGATCTGCAGCTCGAGCGGATCAACGTCTACTACAACGAGGCCACGGGCGGGCGGTACGTGCCGCGTGCGATCCTCATGGACCTTGAGCCAGGCACCATGGACAGCGTGCGTGCGGGCCCGTTTGGACAGCTGTTCCGCCCGGACAATTTTGTGTTCGGGCAAACTGGAGCAGGCAACAACTGGGCCAAGGGTCACTACACCGAGGGGGCCGAGCTCATAGACTCGGTGCTTGATGTTGTGCGGAAGGAGGCAGAGGGCTGCGACTGCCTCCAGGGTTTCCAGATGTGCCACTCCTTGGGAGGAGGCACAGGCTCAGGAATGGGTACATTGCTGATTTCAAAGGTCCGCGAGGAGTACCCAGACCGCATCATGGAGACCTTCTCCGTGATCCCCAGTCCTAAGGTCTCGGACACGGTCGTAGAGCCGTACAATGCAGTGCTCTCATTCCACCAGCTCGTGGAGAATGCCGATGAGTGTTTCTTGCTGGATAATGAGGCCCTCTACGATATTTGCTTTCGCACGTTGAAGCTCACGACGCCCACATACGGAGACCTGAACCACCTTGTGAGTGCGGCCATGAGCGGCGTCACCACATGCTTGCGCTTCCCTGGCCAGCTGAACTGCGACCTCCGCAAGATCGCCGTGAACTTGGTCCCATTTCCGCGCCTGCACTTCTTCATGACGGGTTTCGCGCCGCTCACCTCACGCGGGTCGCAGCAGTACCGTGCCCTGACGGTGCCAGAGCTCACGCAGCAGATGTTTGATGCTAAGAACATGATGTGCGCGGCTGACCCCAGGCACGGGCGCTATTTGACAGCCGCAGCACTTTTCCGTGGCCGAATGTCCACAAAGGAGGTCGACGAGCAGCTTCTCAACGTGCAAAACAAGAACTCCTCATACTTTGTGGAATGGATCCCCAACAACATCAAGGCCTCCGTTTGTGACATCCCACCCAAGGGCCTCAAGATGGCGGTGGCGTTTGCCGGCAACTCCACGGCGATCCAGGAAATGTTCAAACGCGTAGCTGAGTACTTCACAGCGATGTTCCGCCGCAAGGCCTTCCTGCATTGGTACACGGGGGAGGGTATGGATGAGATGGAGTTCACCGAGGCTGAGAGCAACATGAACGACCTCGTCTCGGAG Alexandrium_minutum ATGCGTGAGCTTGTCCACATCCAGGGCGGCCAGTGCGGCAACCAGATCGGCGCCAAATTCTGGGAGGTCATCTCCGACGAGCACGGCATCGATCCCACCGGCACGTACCATGGTGACTCCGACTTGCAGTTGGAGCGCATCAACGTCTACTACAACGAGGCGACGGGCGGCCGCTACGTGCCGCGCGCCATCCTCATGGACTTGGAGCCGGGCACCATGGACAGCGTCCGCGCGGGGCCCTTCGGCCAGCTCTTCAGGCCGGACAACTTCGTCTTCGGCCAGACCGGAGCCGGCAACAACTGGGCGAAGGGCCACTACACCGAGGGAGCCGAGCTCATCGACTCCGTGCTCGACGTTGTGCGGAAGGAGGCCGAGGGCTGCGACTGCCTCCAGGGCTTCCAGATGTGCCACTCCTTGGGAGGAGGCACCGGCTCGGGCATGGGCACGCTGCTCATCTCGAAGGTCCGCGAGGAGTATCCCGACCGCATCATGGAGACCTTTTCCGTGATCCCCTCTCCCAAGGTCTCCGACACCGTCGTGGAGCCGTACAACGCCGTCCTGTCGTTCCACCAGTTGGTGGAGAACGCCGACGAGTGCTTCCTGTTGGACAACGAGGCCTTGTACGACATCTGCTTCCGCACGCTGAAGCTCACCACGCCGACGTACGGGGATCTGAACCACTTGGTGAGCGCGGCCATGAGCGGCGTGACGACGTGCCTCCGCTTCCCCGGTCAGCTGAACTGTGACTTGCGCAAGATCGCAGTGAACTTGGTCCCGTTCCCCCGCTTGCACTTCTTCATGACCGGCTTCGCGCCGCTCACGTCGCGTGGCTCGCAGCAGTACCGCGCCTTGACGGTGCCAGAGTTGACGCAGCAGATGTTCGACGCGAAGAACATGATGTGCGCGGCTGACCCGAGGCACGGGCGCTACTTGACTGCCGCGGCCCTCTTCCGTGGCCGCATGTCCACCAAGGAGGTGGACGAGCAGATGCTCAACGTCCAGAACAAGAACTCCTCCTACTTCGTCGAGTGGATCCCCAACAACATCAAGGCCTCCGTCTGCGACATTCCGCCCAAGGGCTTGAAGATGGCGGTGGCCTTCGCCGGAAATTCCACGGCCATCCAGGAGATGTTCAAGCGCGTGGCCGAGTACTTCACGGCGATGTTCCGGCGCAAGGCCTTCCTCCACTGGTACACAGGCGAGGGCATGGACGAGATGGAGTTCACTGAGGCCGAGAGCAACATGAACGACTTGGTCTCCGAG Amphidinium_carterae ---------------------------------------------attggagccaagttctgggaggtcatctctgatgagcatggcattgaccccactggcacctaccatggcgacagcgatctgcagttagagcgtatcaacgtctactacaacgaggccactggcggccgctatgtgccacgtgcagtcttgatggatctggagccaggcaccatggacagcgtccgtgctggtcccttcggccagctcttccgccccgacaacttcgtcttcgggcagactggagcaggcaacaactgggccaagggccactacaccgaaggtgccgagctcatcgattccgtcctcgacgtggtgcgcaaggaggcagagggctgcgattgcttgcagggcttccagctttgccactcccttggtggtggcaccggcgcaggtatgggcaccttgttgatctccaaggtgcgtgaggagtacccggaccgtatcatggagaccttctccattatcccatccccaaaggtgtccgatactgttgtggagccatacaacgcagtgctttctttCCATCAATTGGTGAAGAACGCAGATGAGTGCATGCTCTTGGACAACGAGGCATTGTACGACATCTGCTTCCGTACATTGAAGTTGACCACACCAACATAC------------------------------------------------------------------------------------------------gtgaacctgattccattcccacgtctgcacttcttcatgacaggcttcgcgccgctgacatcccgcggctcacagcagtaccgtgccttgaccgtgcccgagttgacgcagcagatgttcgatgccaagaacatgatgtgcgcagcagaccctcgccacgggcgctacctcaccgcagcggcgctcttccgcggccgcatgtccaccaaggaggtggatgagcagatgctgaacgtgcagaacaagaacagctcctactttgtggagtggatccccaacaacatgaagtgcggcgtctgcgatattccaccaaagggcttgaagatggccgtggccttcttggggaacaccaccgccatccaggaaatgttcaagcgagtggcggagtacttcacagccatgttccgccgcaaggccttcttgcactggtacaccggtgagggc--------------------------------------------------------- Azadinium_spinosum ATGCGTGAGTTGGTCCACATCCAGGGCGGCCAGTGCGGGAACCAAATCGGAGCGAAGTTCTGGGAAGTCATCTCCGATGAGCACGGCATCGATCCAACAGGAACGTATCACGGGGACAGCGACCTCCAGCTCGAGCGCATCAATGTGTATTACAACGAAGCAACGGGTGGCCGCTACGTGCCGCGCGCCATCTTGATGGACCTCGAGCCAGGCACGATGGACTCGGTGCGTGCCGGCCCTTTCGGTCAGCTCTTTCGCCCGGACAATTTCGTATTCGGACAGACCGGTGCCGGGAACAACTGGGCGAAGGGACACTACACCGAGGGGGCCGAACTCATCGACTCAGTGCTCGATGTCGTGCGCAAGGAAGCGGAGGGTTGCGATTGCCTCCAGGGCTTCCAGATGTGCCACTCCCTGGGTGGAGGCACGGGATCGGGAATGGGCACCCTGCTCATCTCCAAGGTTCGCGAAGAGTACCCAGATCGTGTCATGGAGACGTTCTCTGTCATCCCCAGCCCCAAAGTCTCGGACACGGTGGTGGAGCCTTATAATGCGGTGCTCAGCTTTCACCAGCTCGTCGAGAATGCGGATGAGTGTTTCCTGCTGGATAACGAGGCTCTGTACGACATCTGCTTCCGCACGTTGAAGCTGACCACGCCCACCTACGGTGACCTCAACCACTTGGTGAGCGCTGCCATGACCGGTGTCACAACTTGCCTTCGCTTCCCTGGCCAGCTGAATTGCGACTTGCGCAAGATCGCTGTGAATCTCATCCCGTTCCCCCGTCTTCACTTCTTCATGACCGGCTTTGCGCCTCTGACTTCCAGGGGATCGCAGCAGTACCGCGCCCTGACCGTCCCGGAGCTGACGCAGCAGATGTTCGATGCCAAGAACATGATGTGCGCGGCCGACCCTCGGCATGGCCGCTACCTGACGGCCGCGGCCCTGTTCCGCGGCCGGATGAGCACCAAGGAGGTGGATGAGCAGATGCTCAACGTCCAGAACAAGAACAGCTCATACTTCGTGGAATGGATCCCGAACAACATCAAGGCATCGGTCTGCGACATCCCGCCCAAGGGCCTGAAAATGGCTGTGGCGTTCGCGGGCAACAGCACAGCCATTCAGGAGATGTTCAAGCGCGTCGCTGAGTACTTCACTGCGATGTTCAGGCGCAAGGCGTTTCTGCATTGGTACACAGGCGAAGGAATGGACGAGATGGAGTTCACCGAAGCCGAGTCCAACATGAACGATCTTGTCTCCGAA Crypthecodinium_cohnii atgcgtgagttggtccacatccagggcggccagtgcggcaatcagatcggtgccaagttctgggaagtcatctccgacgagcatggcatcgaccctaccggaacctaccatggcgactccgacttgcagctcgaaaggatcaacgtctactacaacgaggctaccggtggacgttacgtcccccgagcagtgttgatggacttggagcctggcaccatggacagcgttcgcgctgggcctttcggtcagttgttccgccctgacaacttcgtcttcggccagaccggagctggcaacaattgggccaagggccactacaccgagggtgccgagttgatcgattcggtcttggatgttgtccgaaaggaggctgaaagctgcgactgcttgcagggcttccagatgtgccactctttgggtggtggcactggctccggaatgggcaccttgttgatctccaaggttcgtgaggaatatcctgacaggatcatggagaccttcagtgtcatccccagcccaaaggtgtccgacactgtcgtcgagccctacaacgctgtgctctccttccaccagctcgtcgagaacgccgatgagtgcttccttcttgacaacgaggctctgtacgacatctgcttcaggaccttgaagttgaccacccccacctacggtgacctgaaccacttggtcagcgccgccatgagtggagtgaccacttgcttgcgattccctggacagttgaattgcgatctccgaaagatcgccgtgaacttgattcccttcccccgattgcacttcttcatgaccggcttcgcccccttgacctcccgtggctcccagcagtaccgtgccttgactgtgcctgagttgactcagcagatgttcgatgccaagaacatgatgtgcgctgccgaccccaggcacggccgctacttgaccgcagctgctctcttccgtggccgcatgagcaccaaggaagtcgacgagcagatgctcaacgtgcagaacaagaacagctcctattttgtggagtggatccccaacaacatcaaggcttccgtgtgcgacattcctcccaagggattgaagatggccgtcgccttcgccggcaactccactgccatccaggagatgttcaagcgagtggcggagtacttcacggccatgttccgccgcaaggccttcttgcattggtacactggagagggcatggacgagatggagttcactgaggccgagtccaacatgaacgatttggtctctgag Cryptosporidium_parvum ATGAGAGAAATTGTTCATATTCAGGGAGGACAATGTGGGAACCAGATTGGTGCTAAATTCTGGGAAGTCATTTCTGATGAGCACGGGATCGACCCTACTGGTACTTATCATGGAGAATCAGATTTACAGATGGAACGTATTAATGTTTTCTACAATGAAGCTTCGGGTGGAAGATACGTTCCAAGAGCGATTTTGGTAGATCTTGAGCCAGGAACAATGGATTCAGTTAGAGCTGGTCCTTTTGGATCATTATTTAGACCTGATAACTTCATTTTTGGTCAAAGTGGAGCTGGTAATATTTGGGCCAAAGGTCATTATACAGAGGGAGCTGAACTCTTAGATGCTGTAATGGATGTAGTTAGACATGAGGCAGAATCTTGTGATTGCTTACAGGGTTTCCAAATCACTCACTCTTTGGGAGGTGGTACAGGATCAGGTATGGGTACTTTGTTGGTTGGAAAGATTCATGAAGAATTCCCAGATCGTATTTTGCAGACCTTTTCAGTATTCCCATCTCCAAAGGTATCAGATACTGTAGTAGAGCCCTACAATGCAACCTTATCAATTCACCAGTTGGTTGAAAATTCGGATGCTGTTCAAGTAATCGATAATGAAGCCTTGTATGATATTTGCTTTAGAACATTGAAACTAACAAATCCATCTTATGGAGATTTGAATCACTTGGTTTCAGTTGCTATGTCTGGCGTAACTTGTTGCCTACGTTTCCCAGGTCAACTAAACAGTGACTTAAGAAAGATGTGCGTTAACTTGGTTCCTTTCCCAAGATTACACTTCTTCATGATTGGGTTTGCACCTCTAACATCAAGAGGTTCTCAACAATACAGATCTTTATCAGTTGCAGAGCTTACCCAACAAATGTTTGATGCAAAGAATATGATGTGTGCTTCAGACCCTCGACATGGAAGATATCTCACAGCTAGTGTAATGTTCAGAGGAAGAATGTCAACAAAGGAAGTTGATGAACAGATGCTTTTGGTTCAAAACAGAAACTCATCTTATTTTGTTGAATGGATTCCAAATAATATCAAGTCATCAGTTTGTGATATTCCTCCAAAAGGATTGAAGATGGCTTCAACCTTTGTTGGAAACTCTACTGCCATCCAGGAAATGTTCAGACGTGTTGCTGAGCAATTCACTTCCATGTTCAGGAGAAAGGCCTTCTTGCACTGGTATACTGGAGAGGGAATGGATGAGATGGAATTCACTGAAGCTGAGAGCAATATGAACGATTTAGTTTCTGAA Eimeria_tenella ---------------------------------------------attggcgccaagttctgggaggttatttcggatgaacacggcatagccccgaccggcacgtacaagggtgacagtgatctccagctcgagcgcatttcagtcttctacaatgaagctacgggcggacgctacgtgcccagggccgtcctcatggacctggagcccggcacgatggactctgtgcgatcggggcctttcgggcagctttttcgccccgacaacttcgtgttcggccagaccggcgcgggcaacaactgggcgaagggtcattacactgagggcgcggagctgatcgactcagtgctcgacgtggtgcggaaagaggcggagggctgcgactgcctacagggcttccaggtcacgcactcgctgggaggaggcacgggcagcggcatgggaacgctgctgatcagcaaagtccgcgaagaataccccgacaggatcatggaaaccttctcggtgttcccgtcgccgaaggtgtcggacactgtggtggagccgtacaacgcgacgctttccgtgcaccagctggtcgaaaacgcagacgaggttcaggtcattgacaacgaagcactttacgacatttgcttccgcactctgaagctcacgacccccacctacggggacctcaaccacctggtcagcgccgccatgtccggggtgacttgctcgctgcgcttcccgggccagctgaactccgacctcaggaagctcgccgtcaacttggtgcctttcccgcgtctgcacttcttcctcattggcttcgccccgctgaccagccgcggctcccagcagtaccgcgccttgactgtgcccgaactcacccagcaaatgttcgacgccaagaacatgatgtgcgcctcggacccgcgccacggccgctacctgacggcctgcgcgcttttccgcggccgcatgagcaccaaggaggtcgacgagcaaatgctgaatgtgcaaaacaagaactcctcctacttcgtcgagtggatccccaacaacatgaagtcgggggtctgcgacatcccgccaaaggggctcaagatgtccgtcaccttcgtcggaaactcaaccgccattcaagaaatgttcaagcgcgtgtccgaccagttcacggccatgttcaggcgcaaggctttcctccactggtacactggagagggtatggacgaaatggagttcaccgaagccgagtctaacatgaacgatctggtatctgaa Gymnodinium_aureolum ATGCGTGAGCTTGTGCACGTCCAGGCTGGGCAGTGCGGGAATCAAATTGGGGCGAAGTTCTGGGAGGTGATCTCTGACGAGCATGGAATCGACCCCACTGGGACGTACCACGGCGACAGCGATCTGCAGTTGGAGCGCATCAATGTTTACTATAACGAGGCGACGGGAGGCCGCTACGTGCCCCGCGCCATCCTCATGGACCTCGAACCGGGAACCATGGACAGCGTGCGCGCTGGCCCCTTTGGCCAACTTTTCAGGCCCGACAACTTTGTCTTTGGCCAGACAGGGGCAGGCAACAATTGGGCCAAGGGCCACTACACGGAGGGTGCCGAGCTAATCGATTCGGTGCTCGACGTCGTGCGAAAAGAAGCCGAAGGGTGTGATTGTCTCCAGGGTTTCCAGATGTGCCACTCCTTGGGGGGCGGCACTGGCTCCGGCATGGGCACGTTGCTGATCTCGAAAGTGCGTGAGGAGTACCCTGATCGGATCATGGAGACGTTCTCGGTGATCCCCTCGCCGAAAGTCTCAGACACTGTGGTGGAGCCCTACAACGCCGTCCTCTCCTTCCACCAGCTGGTCGAGAATGCCGATGAGTGCTTCTTGCTCGACAACGAGGCCTTGTACGACATCTGTTTTCGCACCCTCAAGTTGACAACGCCGACGTACGGAGACTTGAACCACCTCGTTAGCGCCGCCATGAGCGGGGTGACCACATGCTTGCGTTTCCCCGGGCAGCTTAATTGCGACTTGCGCAAGATCGCGGTGAACCTCATCCCCTTTCCCCGCTTGCACTTTTTCATGACCGGCTTCGCGCCGTTGACGTCCCGCGGCTCGCAGCAGTACCGCGCCCTGACTGTCCCAGAGCTCACCCAGCAGATGTTCGACGCAAAGAACATGATGTGTGCGGCGGACCCGCGCCACGGCCGCTACCTTACAGCCGCCGCACTCTTCCGTGGTCGCATGTCCACGAAGGAGGTGGACGAGCAGATGCTGAACGTGCAGAATAAGAACTCATCTTACTTCGTCGAGTGGATCCCGAACAACATTAAGGCTTCCGTGTGCGACATCCCTCCGAAGGGCCTCAAGATGGCGGTCGCGTTCGCCGGCAACTCGACCGCTATTCAGGAAATGTTCAAGCGCGTGGCCGAGTACTTCACGGCAATGTTCCGCCGCAAGGCCTTCTTGCATTGGTACACTGGCGAGGGTATGGATGAGATGGAGTTCACTGAGGCAGAGTCCAACATGAACGACCTTGTCTCCGAG Gymnodinium_beii ---------------------------------------------------------------------------------------------------------------------------CTGCAGCTGGAGCGCATCAACGTTTACTTCAACGAGGCCACAGGTGGTCGCTACGTGCCAAGGGCCATCCTGATGGACTTGGAGCCTGGAACCATGGATAGTGTTCGAGCTGGTCCATTCGGTCAGCTCTTTCGCCCAGACAACTTCGTGTTCGGCCAGACTGGAGCAGGTAACAACTGGGCAAAGGGACACTACACCGAGGGTGCAGAGCTCATTGACTCCGTACTTGACGTAGTGCGCAAGGAGGCGGAGGGATGTGATTGCCTCCAGGGTTTCCAGATGACTCACTCGTTGGGAGGTGGCACTGGTGCTGGCATGGGCACGCTCCTCATCTCCAAGGTCCGCGAGGAGTACCCAGACCGTATCATGGCAACCTACTCCGTGATCCCATCACCGAAAGTCTCTGACACTGTTGTTGAGCCATACAACGCTGTGCTGAGCTTCCACCAGCTTGTGGAGAACTCCGACTCTTGCTACCTCCTTGACAATGAGGCCCTCTATGACATCTGTTTCCGCACTTTGAAACTTACCACTCCAACGTACGGAGATCTGAACCACCTCATCTCCGCAGCTCTGTCTGGCACCACCTGTGGTCTTCGCTTCCCTGGACAGCTCAACTGTGACCTCCGCAAGATGGCTGTGAACCTGGTGCCATTCCCTCGTCTGCACTTCTACATGACTGGCTTCGCACCACTCACTTCCCGAGGCTCTCAGCAGTACCGTGCCCTCACTGTGCCTGAGCTCACTCAGCAGATGTTTGATGCCAAGAACATGATGTGTGCTGCAGATCCTCGCCACGGCCGCTACCTCACATGCGCTTGTCTCTTCCGTGGCCGCATGTCCACCAAGGAGGTGGATGAGCAGATCTTGAACGTGCAGAACAAGAATTCCTCATACTTCTGCGAGTGGATCCCCAACAACATCAAGGTGGGGGTTTGCGACATCCCGCCGAAAGGGCTCAAAATGGCAGTGGCTTTTGCAGGGAACTCCACTGCCATCCAGGAGATGTTCAAGCGCGTTGCCGAGTACTTCACTGCCATGTTCCGCCGTAAGGCATTCCTGCACTGGTACACCGGAGAGGGCATGGACGAAATGGAGTTCACT------------------------------------ Heterocapsa_triquetra ------------------------------------------cagattggcgccaagttctgggaggtgatctccgacgagcacggcatcgaccccacgggcacgtaccatggagactctgacctgcagctggagcgcattaacgtgtactacaacgaggccaccggtggccgctatgtgccgcgcgccatcttgatggacctggagccgggcacgatggacagcgtgagggctggcccttttggccagctcttccgcccagacaacttcgtgttcggccagaccggcgcgggcaacaactgggcaaagggccactacactgagggcgcggagctcatcgactccgttctggacgttgtgcgcaaggaggcggagggctgcgactgcctgcagggcttccagatgacccactccctgggcggcggcaccggctccggcatgggtacgctgctcatctccaaggtgcgcgaggagtacccggaccgtatcatggagaccttttccgtgatcccgtcgccgaaggtgtcggatacggtggtggagccgtacaacgcggtgctctccttccaccagcttgtggagaacgctgacgagtgcttcctgctggacaacgaggccctctatgacatctgcttccgcacgctgaagctgacgacgcccacctacggtgacctgaaccacctggtgagcgctgccatcagtggtgtgaccacgtgcctgcgcttcccgggtcagctgaactgcgacctgcgcaagatcgcggtgaacctcatcccgttcccgcgtctgcacttctttatgaccggcttcgcgccgctgacctcccgcggctcgcagcaataccgcgcgctcacggtgccggagctgacgcagcagatgtttgatgcgaagaacatgatgtgcgcagcggatccccgtcatggccgctacctcacggcggcggcgctcttccgtggccgcatgtccacgaaggaggtggatgagcagatgttgaatgtgcagaacaagaactcctcgtacttcgtggagtggatcccgaacaacatcaaggcctcgatctgcgacatcccgccgaagggcttgaagatggccgtggcctttgcaggcaactccacggcgatccaggagatgttcaagcgtgtggcggagtacttcacgtcgatgttccgccgcaaggccttcctgcactggtacaccggcgagggcatggacgagatggagttcactgaggcggagagtaacatgaacgacctggtctccgag Karenia_brevis atgcgtgagctcgtgcacatccagggaggacagtgcggcaaccagatcggtgccaagttctgggaggtcatctccgatgagcatggcatcgaccccaccggaacttaccatggcgattccgatttgcagttggagcgcatcaacgtctactacaacgaggctactggaggtcgctatgtcccacgtgcagtcttgatggatttggaacctggcaccatggacagtgttcgggcaggtccttttggacaattgttccgtcctgacaacttcgtgtttggtcagacaggcgcaggcaacaactgggctaagggccattacaccgaaggcgccgaacttatcgactccgtactcgatgttgtccgtaaggaggccgagggttgcgactgcctgcagggcttccagatgtgccactcgctcggcggtggcactggctccggcatgggcacacttctcatctcgaaagtgcgtgaggagtacccagaccgcatcatggagacattctctgtcatcccttcaccgaaggtgtctgacacggttgtggagccttacaacgcagttctgtcattccaccagttggtggaaaacgcagacgagtgcttcctgcttgacaacgaggctctctatgacatctgcttccgcaccttgaagctcaccactcccacctatggcgacttgaaccatcttgtctctgccgcaatgtcaggggtcacaacgtgcttgcgtttcccaggtcagctgaactgtgatttgaggaagatcgctgtgaatttgattcccttccctcgcctgcacttcttcatgacgggctttgcgccactcacctcacggggctctcagcagtaccgtgctctcaccgtcccggagctcactcagcagatgttcgacgcgaagaacatgatgtgtgcggcagatcctcgccacggccgctacctcacggctgccgctttgttccgtgggcgcatgtctacaaaggaggtcgatgagcagatgctgaatgtgcagaacaagaactcttcatattttgttgagtggatccccaacaacatcaaggcgagtgtctgcgacatcccgcccaaaggcctcaagatggcggtggccttcgcagggaactccacggccattcaggagatgttcaagcgcgtcgcggagtatttcacagctatgttccgtcgtaaggccttcttgcattggtacacaggagagggtatggatgagatggaattcacggaggctgaatcaaacatgaacgatttggtgtccgag Karlodinium_veneficum atgcgtgagcttgtgcacatccagggaggacagtgcgggaaccaaatcggagcaaagttctgggaggtgatcagtgacgaacatggcattgacccgacgggaacatatcatggagattctgatttgcagctagagcgtatcaatgtgtattacaatgaagccactggaggacgatatgtccctcgtgcaatactcatggaccttgaacctggaaccatggatagtgttcgcgctggtcctttcggtcagctgtttcgtcctgataacttcgtgtttggacaaactggagcgggtaataattgggcaaagggtcattatacggaaggggcggagttgatcgactcggttctggacgtggttcgaaaggaagcagaaggttgtgactgcttgcagggctttcagttgtgccattctctcggaggaggtactggcgcaggtatgggcacactgctcatctcaaaggtccgcgaagagtaccccgatcgcatcatggagacgttttcgatcattccatctcctaaggtctctgacactgttgttgagccatataatgcagtcttgtctttccatcagctcgtcgagaatgctgacgagtgtttcttgcttgacaacgaggctctatatgacatttgttttcgaactctgaagctcacaacccctacatatggcgacttgaatcacttggttagcgcagcaatgagtggtgttacttgctgtctccgattcccaggacagttgaattgcgatctccgcaagatcgctgtaaatctcattccatttccccgcttgcactttttcatgacaggcttcgcacccttgacctcccgtggttctcagcagtaccgtgccctcaccgtgcccgaacttacgcagcagatgtttgatgccaaaaacatgatgtgtgcagcagatcctcgccatggccgttacttgaccgctgctgccttgtttcgcggacgcatgtcgactaaagaagtggatgagcagatgctgaatgtgcagaacaaaaactcttcctacttcgttgagtggatcccaaataatattaaagctagcgtttgcgacatcccaccgaagggtctcaaaatggcagttgcgtttgctggcaattctaccgccattcaggagatgttcaaacgtgttgccgagtatttcacagctatgttccgtcgtaaagctttcttgcactggtacacaggtgaaggcatggatgagatggaattcacggaagctgaatccaatatgaacgatctcgtttctgag Lepididinium_chlorophorum ATGCGCGAACTTGTGCACATCCAAGGAGGTCAATGCGGCAATCAGatcggggcaaagttctgggaggttatctctgatgagcacggtatcgatcccactggaacttatcatggtgacagtgatttgcagctcgagcggatcaacgtatattacaatgaagctactggaggccgatatgtccctcgcgcgattctgatggaccttgaaccgggcacaatggacagcgtgcgtgctgggcctttcgggcaattgttccgtccagataactttgtctttgggcaaactggtgctggcaataattgggcaaaaggccattataccgagggagcagaactcatcgattccgtgctcgacgttgtgcgcaaagaggcagaagggtgcgattgcttacaaggtttccaaatggtgcacagtctcggtggtggtactggttcaggtatggggacacttttgatctccaaagtgcgcgaggagtatccagaccgcgtcatggaaacattttcggtgatcccttctcccaaagtaagcgacacggtcgtcgagccttacaatgccgtgttatccttccatcagctggtcgaaaatgcggatgagtgcttcttgctggataatgaggctctatacgacatctgtttcaggaccttgaagttgacgacgcctacatacggtgatcttaatcacctcgtgagcgccgccatgagcggcgtcaccacatgcttacgcttccctgggcagctgaactgtgaccttcgcaaaattgccgttaatctcatcccttttcctcgattgcatttctttatgacaggctttgcgcctctcacgtcgcgtggttcgcaacagtatcgcgctcttacagttcctgagttgacgcagcagatgttcgatgcaaaaaatatgatgtgtgccgcggatccacgccatggtcgctatctcacagctgcagcgctgttccgcgggcgtatgtcgacgaaagaagttgatgagcagatgttgaatgtgcaaaacaagaattcatcttacttcgtggagtggattccgaacaacatcaaagcgagcgtctgcgacattcccccgaaaggtCTGAAAATGGCAGTCGCTTTTGCGGGCAACTCCACAGCAATTCAAGAGATGTTCAAGCGTGTGGCCGAGTACTTTACGGCTATGTTCAGGCGCAAAGCTTTCTTGCACTGGTACACAGGAGAAGGAATGGATGAGATGGAGTTCACAGAAGCGGAATCCAACATGAATGATCTGGTGTCGGAG Lingulodinium_polyedrum ---------------------------------------------atcggtgccaaattttgggaggtcatctcagacgagcacggcattgacccaacaggcacataccatggcgactcggacttgcagttggaaaggatcaacgtgtactacaatgaggcaactggtggccgttatgtcccgcgtgcaatcctcatggaccttgagcctggtacgatggacagtgtccgcgcagggccattcggccaactcttccgtccggacaactttgtcttcggccagactggagcggggaacaactgggcaaaaggtcactacacagagggagctgagctcattgactctgtccttgacgtcgtacggaaggaagctgagggttgcgattgtttgcaagggtttcagatgtgccattccctcggtggaggcacgggttccggaatgggcacattgctgatctcaaaggtgcgtgaggagtatcccgaccggatcatggagacttt------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Oxyrrhis_marina ATGCGCGAACTTGTGCACATTCAGGGCGGCCAGTGCGGCAACCAGATTGGTGCCAAGTTCTGGGAAGTGCTGTCCGACGAGCACGGCATTGACCCGACTGGTACCTACCATGGAGATTCGGACCTGCAGCTTGAGCGGATCAATGTGTATTACAACGAGGCCACTGGTGGCCGATATGTGCCTCGCGCGATTCTGATGGACTTGGAGCCAGGTACCATGGATTCTGTCCGAGCTGGGCCTTTTGGACAGCTGTTCCGACCGGACAACTTCGTGTTTGGACAGACTGGAGCCGGGAACAATTGGGCCAAGGGACACTACACGGAGGGTGCTGAGTTGATCGACTCTGTGTTGGACGTTGTACGAAAGGAGGCAGAGGGATGTGACTGCTTGCAGGGTTTCCAGATCACCCACTCCCTGGGAGGAGGCACAGGCTCCGGAATGGGCACGTTGCTGATCTCCAAGATTCGTGAGGAGTACCCCGATCGGATCATGGCAAGTTTTTCGGTGATCCCATCCCCAAAGGTTTCCGACACCGTCGTTGAGCCTTACAACGCTGTGCTGTCTTTCCACCAGCTTGTGGAAAACGCGGATGAGGTGATGACAATGGATAACGAAGCTCTGTACGACATTTGCTTCCGGACTCTGAAGTTGACTACTCCGACCTACGGAGATTTGAACCATTTGGTGAGTGCGGCGATGTCTGGAATCACCAGTTGCATTCGCTTCCCGGGCCAGTTGAACTGCGACTTGCGCAAGTTGGCTGTGAACATGATTCCTTTCCCTCGACTCCATTTCTTCATGGTGGGCTTCGCTCCTCTGACTTCCCGTGGGTCGCAGCAGTACCGGGCGTTGACGGTGCCCGAGTTGACCCAGCAGATGTTTGACGCCAAGAACATGATGTGCGCTGCGGATCCCCGGCACGGCCGATATTTGACCGCGTGCGCCATGTTCCGAGGGCGCATGTCGACGAAGGAGGTCGATGAGCAGATGTTGAATGTGCAGAATAAGAACTCTTCGTACTTTGTGGAGTGGATCCCCAACAACATCAAGCAGTCGGTGTGCGACATTCCGCCGAAAGGATTGAAGATGTCTGTAGCGTTTTTGGGGAATTCGACTGCCATCCAGGAGATGTTCAAGCGCGTGGCCGAGCAGTTCACCGCAATGTTCCGCCGCAAGGCTTTCCTGCACTGGTACACCGGAGAGGGAATGGACGAGATGGAATTCACTGAGGCTGAGAGTAACATGAATGATTTGGTGTCGGAG Pentapharsodinium_dalei ------------------------------------------------------------------------------GAGCACGGGATCGATCCGACTGGGACTTATCATGGCGACAGCGACCTCCAGCTTGAGCGCATCAACGTCTATTACAATGAGGCGACCGGCGGCCGCTACGTGCCAAGGGCTATTCTGATGGACCTAGAGCCGGGCACCATGGATAGCGTGAGGGCGGGCCCCTTCGGGCAGTTGTTCCGCCCGGACAACTTTGTGTTCGGCCAGACTGGCGCGGGCAACAACTGGGCGAAGGGACATTATACAGAAGGAGCCGAGTTGATTGATTCGGTTCTGGATGTGGTGCGCAAGGAGGCTGAGGGTTGCGACTGCTTGCAGGGCTTCCAGATGTGCCACTCCCTTGGTGGCGGTACTGGCTCCGGCATGGGTACGCTGTTGATCAGCAAAGTTCGCGAGGAGTATCCTGACCGTATCATGGAGACATTCTCGATCATTCCATCGCCCAAGGTGAGCGACACCGTGGTGGAGCCTTACAACGCGGTGCTGTCCTTCCATCAGCTCGTGGAGAACGCGGATGAGTGCTTCTTGTTGGACAACGAGGCGTTGTACGACATCTGCTTCCGCACGCTGAAGTTGACCACTCCGACTTACGGCGACCTCAACCACTTAGTGAGCGCTGCGATGTCGGGCGTTACGACCTGCCTTCGGTTCCCAGGACAGCTCAACTGCGACCTCCGCAAAATCGCCGTCAACCTGATCCCCTTTCCGCGTTTGCACTTTTTTATGACCGGCTTTGCTCCCCTTACCTCCCGCGGCTCGCAGCAGTACCGCGCGCTCACCGTGCCTGAGCTCACGCAGCAGATGTTCGACGCCAAGAACATGATGTGCGCGGCAGACCCTCGTCATGGCCGCTACCTCACGGCTGCGTGTCTCTTCCGGGGGCGCATGTCCACAAAGGAGGTTGACGAGCAGATGTTGAATGTCCAGAACAAGAACTCCAGCTATTTTGTCGAGTGGATTCCTAACAACATCAAGGTCTCCGTCTGTGACATCCCGCCGAAGGGCCTCAAGATGGCCGTCGCCTTCGCGGGCAACTCGACCGCCATCCAGGAAATGTTCAAGAGGGTCGCCGAGTACTTCACTGCCATGTTCCGGCGCAAGGCCTTCTTGCATTGGTACACGGGCGAGGGTATGGATGAGATGGAGTTCACCGAGGCCGAGTCCAACATGAATGACTTGGTGTCCGAG Perkinsus_marinus atgcgcgagctcgttcacatacaggccggccagtgcggtaaccaaatcggcgccaagttctgggaggtcatctccgatgagcacggcatcgaccccactggtacctaccacggtgactccgatctccagctagagcgcattaacgtgtactacaatgaagccactggtggacgttatgtacctcgcgctgtattaatggatcttgagcctggcactatggactcagttcgcgctggtccattcggtcaactcttccgtcccgataacttcgtgttcggacagagtggagccggcaataactgggccaagggtcactacacggagggtgctgaattgatcgattccgttctcgatgttgtccgaaaggaggctgaaggttgcgattgcttacagggtttccaaatctgccactccatgggtggtggtaccggatctggtatgggaactctcttgatctccaagattcgagaggagtatcctgatcgtattatggagactttctccgtgttcccctcccccaaagtgtctgacactgtggttgagccttataatgctaccttgtcagtacatcagcttgttgagaacgctgatgaggttatggtgctcgacaacgaggccctctatgacatctgcttcaggactctaaaactcacaacgcctacttacggtgacctcaaccatttggtctctgctgctatgtctggtgtcactacttgcttgcgattccccggtcagctcaacgctgatctccgtaagcttgcggtcaacatgatcccgttcccccggttacatttcttcatgacgggcttcgcccctctcacctctcgtggctctcagcaatatcgcgctcttaccgtgcccgagttgacccagcaaatgttcgatgccaagaacatgatgtgcgcgtctgatcctcgacatggtagatatctgaccgctaccgctctcttccgtggccgaatgtcgaccaaggaagtcgatgagcaaatgctcaatgtccagaataagaactcgagttactttgtcgagtggatccccaataacatcaagagcggtgtctgcgatatcccccccaagggcctcaagatggccgtgaccttcttgggtaactccactgccatccaagagatgttcaagcgggtggctgaacaattcactgcaatgttccgaaggaaggctttcctccattggtatactggtgagggtatggatgagatggagttcactgaggctgagtccaacatgaacgacttggtttccgag Polarella_glacialis ---------------------------------------AACCAGATTGGTGCCAAATTCTGGGAAGTCATATCTGATGAACACGGCATCGATCCCACCGGCACTTACCATGGTGACTCCGATCTGCAGCTGGAGCGCATCAACGTCTACTTCAACGAGGCGACCGGTGGACGATATGTCCCACGCGCCATCCTCATGGACCTCGAGCCAGGCACCATGGACAGCGTGAGGGCTGGTCCGTTTGGCCAGCTCTTCCGCCCTGACAACTTTGTCTTCGGCCAGACCGGCGCAGGAAACAACTGGGCCAAGGGACACTACACGGAGGGTGCCGAGCTGATCGACAGCGTCCTCGATGTGGTGCGCAAGGAGGCTGAGGGCTGCGACTGCCTCCAGGGCTTCCAGATGTGCCACAGTTTGGGCGGTGGCACTGGCTCTGGCATGGGCACTCTCCTTATCTCCAAGGTGCGCGAGGAATACCCTGATCGCGTCATGGAGACCTTCTCGGTCATTCCTTCCCCTAAAGTGTCTGACACAGTGGTCGAGCCTTACAATGCTGTATTGAGCTTTCACCAGCTGGTCGAGAATTCTGATGAGTGCTTCTTGCTGGACAATGAGGCGCTTTACGACATTTGCTTCCGCACTCTGAAGCTCACCACTCCGACCTACGGCGACTTGAACCATCTTGTTTCCGCTGCCATGTCCGGAGTGACTTGCTGCCTTCGCTTCCCTGGACAGCTGAATTGCGACCTTCGTAAGATCGCCGTGAACTTGGTGCCTTTCCCTCGTTTGCACTTCTTCATGACAGGCTTCGCTCCTCTCACTTCCCGTGGATCCCAGCAGTACCGTGCTCTGACGGTGCCGGAGCTTACGCAGCAAATGTTCGAAGCAAAAAACATGATGTGCGCCGCTGACCCTCGCCACGGACGCTACTTGACCGCCGCTGCCCTCTTCCGTGGCCGCATGTCCACCAAGGAGGTGGACGAGCAGATGCTGAACGTGCAAAACAAGAACTCTTCTTATTTTGTTGAATGGATCCCGAACAACATCAAGGCTTCCGTGTGCGATATCCCTCCAAAGGGCTTGAAAATGGCTGTTGCTTTTGCAGGAAACTCTACAGCGATTCAGGAGATGTTCAAGAGAGTGGCCGAGTACTTCACTGCCATGTTCCGCCGCAAGGCCTTCCTCCACTGGTACACCGGAGAGGGTATGGACGAGATGGAATTCACCGAGGCTGAGAGCAACATGAACGACTTGGTGTCTGAG Prorocentrum_minimum atgcgcgagctcgttcacatccagggcggccagtgcggtaaccagataggagcgaaattctgggaggtgatttcagatgagcacgggattgaccccacgggcacctaccacggcgactccgacctccagcttgagcggatcaacgtgtactacaacgaggccacgggcgggcgctacgtgcccagggcggtgctcatggatctggagcccggcaccatggacagcgtccgcgcggggccgttcggacagttattccggccagacaacttcgtattcggccagactggcgctggaaataattgggcgaaagggcactacaccgaaggagccgagctgatcgatagcgtcctcgacgtcgttcgcaaggaggccgaggggtgcgattgcctgcagggtttccaaatgtgccattccttgggaggaggcacaggcgctgggatgggaaccctgctgatctccaaggtccgcgaggagtacccggatcgcatcatggagactttcagtattatccccagcccaaaagtttcggatactgtcgtggagccgtacaacgccgtcctttctttccaccagctcgtggagaacgcggacgaatgcttcctgttggataacgaggcgctgtatgacatctgtttcaggacgttgaagctgacgactccaacgtacggggacctgaaccacctcgtgagtgcggcgatcagtggcgtgactacgtgcctgcgtttccctgggcagctcaactgtgatttgcgcaagatcgccgtgaatctgatcccgttcccgcgcctgcacttctttatgactggtttcgcgccgctcacgagccggggttcccagcagtacagagccctgacagtccctgagctgacccagcagatgttcgatgcgaaaaacatgatgtgtgcggcagacccacgtcacggtcgctacttgaccgccgcggcgctcttccgcggtcgcatgtccacgaaggaagttgatgagcagatgttgaatgtgcaaaataagaattcgtcgtatttcgtcgagtggatcccgaacaacatcaaagcgtcagtttgcgacatccccccgaagggattgaagatggcggtggcttttgccggcaattctaccgcgatccaagaaatgtttaagcgtgtagcagaatatttcactgccatgttccggcgcaaggcgttccttcattggtacacaggggagggcatggacgagatggagttcaccgaggccgagagtaacatgaacgacctggtttccgag Protodinium_simplex ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ctgatggatttggagccaggaactatggacagtgtccgtgcaggtccattcggccagctatttcgtccagataattttgtcttcggacagactggcgcaggcaacaactgggccaagggacactacactgagggagcagagctcattgacagtgttctggatgttgttcgcaaagaggctgaaggctgcgattgcctgcagggcttccagatgtgccactctctgggcggtggcactggttccggcatgggcactctgctgatcagcaaggtccgcgaggagtacccagaccgtgtcatggagacgttctctgtcattccatcaccaaaagtttctgacaccgtggtggagccatacaatgcggtcctcagcttccaccaacttgtggagaacactgacgagtgcttcttgctggacaacgaggccttgtatgatatctgtttccgcacccttaagctgaccacacctacctacggcgacctgaaccaccttgtctccgcagccatgagcggagccacttgctgcttgcgcttcccaggtcagttgaactgtgacctgcgcaagattgctgtgaaccttgtcccattccctcgcttgcacttcttcatgaccggcttcgcacctctgacctcccgcggctcgcagcagtatcgtgccctgacagttccagaacttacacagcagatgttcgatgctaaaaacatgatgtgtgcagctgacccacgccatggccgttacctgacagcagcagcactcttccgaggccgtatgtccaccaaggaggtggatgagcagatgttgaacgtccagaacaaaaactcctcatactttgttgaatggattcccaacaatatcaaggcatccgtctgcgacatccctccaaagggattgaagatggcagttgccttcgctggcaactccaccgccattcaggaaatgttcaagcgcgttgccgagtacttcactgccatgttccgccgcaaggccttcctgcactggtacacaggtgagggc--------------------------------------------------------- Scrippsiella_trochideae atgcgcgagttggtgcacatccaggccggccagtgcggcaaccagattggtgcgaagttctgggaggtcatctccgacgagcacggcatcgatcccacgggcacataccatggcgattctgatttgcagttggagaggatcaacgtgtactacaatGAGGCCACAGGCGGCCGCTATGTGCCCCGCGCCATCCTGATGGACCTGGAGCCTGGCACCATGGACAGCGTGCGCGCGGGGCCCTTTGGACAGCTGTTCCGCCCCGACAATTTTGTCTTCGGTCAGACCGGAGCCGGTAACAACTGGGCCAAGGGGCACTACACCGAAGGGGCTGAACTCATCGATTCCGTCTTGGATGTTGTCCGCAAGGAGGCCGAGGGATGCGATTGTCTCCAAGGCTTTCAGATgTGCCACTCGCTGGGAGGAGGCACGGGCTCTGGAATGGGGACCCTCCTCATCTCCAAgGTGCGCGAGGAGTACCCGGATCGTATCATGGAGACCTTCTCCGTCATCCCCTCTCCCAAGGTCAGCGACAcAGTCGTCGAACCCTACAACGCAGTGCTCTCCTTCCACCAGCTCGTCGAGAATGCGGATGAGTGCTTTCTGCtgGACAATGAGGCGTTGTACGATATCTGCTTCCGCACCTTGAAGTTGACCACCCCTACCTACGGAGACCTGAACCACCTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Symbiodinium_sp_C3 ATGCGTGAGCTCGTGCACGTCCAGGGCGGCCAGTGCGGAAATCAGATTGGTGCCAAGTTCTGGGAAGTCATTGCGGATGAACACGGCATTGACCCAACTGGAACATACCATGGAGATTCTGACCTGCAGCTCGAACGCATCAACGTTTACTTCAACGAGGCAACAGGTGGCCGCTATGTGCCACGTGCTGTTCTGATGGACCTCGAGCCAGGCACCATGGATAGCGTTCGTGCCGGACCTTTCGGCCAACTGTTCCGCCCGGACAACTTCGTGTTCGGGCAGACAGGTGCTGGAAATAATTGGGCGAAGGGTCACTATACGGAAGGCGCTGAGTTGATTGACTCTGTGCTGGATGTGGTCCGAAAAGAAGCTGAGGGTTGTGATTGCTTACAGGGATTCCAACTTTGCCACTCTCTTGGCGGCGGCACTGGCGCTGGCATGGGAACATTGTTGATCTCCAAAGTGCGCGAAGAATATCCAGATCGCATCATGGAAACATTTTCCGTGATTCCATCTCCAAAGGTGTCCGACACAGTGGTGGAACCATACAATGCAGTGTTGAGCTTCCACCAGCTGGTGGAGAACTCCGATGAGTCCTTCTTGTTGGACAACGAAGCTTTGTACGATATTTGTTTCCGCACGTTGAAACTGACTACTCCAACTTACGGTGACCTGAACCATTTGGTGTCTGCGGCAATGAGCGGTGTGACCTGCTGCTTGCGCTTCCCTGGACAGCTGAACTGCGACTTGCGCAAGATTGCAGTGAACTTGGTGCCGTTCCCACGTCTGCACTTCTTCATGACAGGTTTCGCACCATTGACTTCTCGCGGTTCGCAGCAGTATCGTGCACTGACAGTGCCAGAGTTGACGCAGCAGATGTTTGATGCCAAGAACATGATGTGCGCAGCTGATCCTCGCCATGGCCGCTACTTGACTGCGGCAGCCCTCTTCCGTGGACGTATGTCGACCAAGGAAGTGGACGAACAGATGCTGAATGTTCAGAATAAGAACTCGTCTTACTTTGTTGAGTGGATCCCCAACAACATCAAGGCATCCGTGTGCGATATCCCGCCAAAGGGCTTGAAGATGGCCGTTGCCTTTGCAGGCAACTCTACTGCCATTCAAGAAATGTTCAAGAGGGTGGCGGAGTACTTCACTGCCATGTTCCGCCGCAAGGCCTTCTTGCATTGGTACACTGGTGAAGGCATGGATGAAATGGAGTTCACTGAAGCAGAGTCCAACATGAATGATTTGGTCTCTGAG Thecadinium_kofoidii atgcgagagctggtgcacatccaggcgggccagtgcGGCAACCAGATTGGTGCGAAGTTCTGGGAGGTCATCTCGGACGAGCACGGCATCGACCCCACGGGCACGTACCACGGCGACTCGGACCTGCAGCTTGAACGCATCAACGTCTACTTCAATGAGGCGACTGGCGGCCGTTACGTGCCGCGCGCCGTCCTTATGGACCTGGAGCCTGGCACGATGGACAGCGTCCGAGCTGGACCTTTCGGTCAGCTCTTCCGCCCGGACAACTTTGTCTTCGGCCAGACCGGGGCCGGCAACAATTGGGCGAAGGGCCACTACACGGAGGGCGCCGAGCTCATCGACTCCGTGCTCGATGTGGTGCGCAAGGAGGCGGAGGGCTGCGACTGCCTCCAGGGCTTCCAGATGTGCCACTCCCTGGGTGGCGGGACGGGATCTGGCATGGGCACCCTCCTCATCTCGAAGGTCCGCGAGGAGTACCCCGACCGCGTGATGGAGACCTTCTCCGTCATCCCTTCGCCGAAGGTCTCGGACACCGTGGTGGAGCCGTACAACGCGGTGCTGTCGTTCCATCAGCTCGTGGAGAACGCCGACGAATGTTTCCTGCTCGACAACGAGGCCCTGTACGACATCTGCTTCCGCACGCTGAAGCTGACCACCCCCACTTACGGGGATCTGAACCACCTGGTGAGCGCGGCGATGAGCGGCGTGACCTGCTGCCTGCGCTTCCCGGGGCAGCTCAACTGTGATCTCCGCAAGATCGCCGTGAACCTCATCCCCTTCCCGCGGCTGCACTTCTTCATGACTGGCTTTGCcCCCCTTACCTCGCGCGGGTCGCAGCAGTACCGCGCACTGACCGTGCCCGAGCTCACGCAGCAGATGTTTGACGCCAAGAACATGATGTGCGCAGCCGACCCGCGCCATGGCCGCTACCTCACGGCCGCGTGTCTTTTCCGCGGACGCATGTCCACCAAGGAGGTGGACGAGCAGATGCTCAACGTGCAAAACAAAAATTCCTCCTACTTTGTCGAGTGGATTCCCAACAACATCAAGGCCTCTGTGTGCGACATCCCACCCAAGGGCCTCAAGATGGCCGTGgCCTTCGCCGGGAATTCCACCGCAATCCAGGAAATGTTTAAGCGTGTCCCCgAGTACTTCACCGCCATGTTCCGCCGCAAGGCCTTCTTGcactggtacacgggcgag------------------------------------------------------------ Theileria_parva ATGAGAGAGATCGTACACATTCAAGCTGGTCAATGTGGTAACCAAATTGGTGCCAAATTTTGGGAAGTCATATCTGACGAGCATGGCATAGATTCCAGCGGTATATACCACGGTGACTCAGACCTTCAGTTGGAGCGGATTGACGTCTTCTACAACGAAGCCACCGGAGGAAGATATGTACCAAGAGCAGTTTTGGTGGATCTAGAGCCCGGTACTATGGACTCGGTAAGATCAGGCACCTACGGCGAGCTCTTCAGGCCAGACAACTTCGTCTTCGGACAATCTGGAGCAGGAAACAACTGGGCCAAGGGTCACTACACAGAGGGAGCTGAGCTTGTCGACTCAGTCTTAGATGTCGTGAGAAAGGAGGCAGAGAACTGTGACTGCTTACAAGGATTCCAAGTAACACACTCACTTGGAGGAGGTACCGGATCAGGTATGGGAACACTATTGATCAGCAAGATCAGAGAAGAGTTCCCAGACAGAATCATGGAGACCTTTTCAGTATTCCCAAGTCCCAAGGTCAGTGACACTGTCGTCGAGCCCTACAACGCAACACTCTCAGTTCACCAACTCGTCGAGAACAGTGACGAGGTCCAGGTCATAGATAACGAGGCCTTGTACGACATTTGCTTCAGAACCCTGAAGCTCACCACTCCAACCTACGGAGACTTAAATCATCTCGTTTCAGCCGCAATGAGTGGTGTCACCTGCTCACTCAGGTTCCCAGGACAACTAAACTCCGATTTACGTAAACTGGCTGTCAACTTGATCCCATTCCCAAGGCTCCACTTCTTCATGATTGGTTTCGCACCACTCACCAGCAGAGGAAGCCAGCAATACAGAGCACTCACCGTCGCAGAGCTCACCCAGCAGATGTTCGACGCCAAGAATATGATGTGCGCCAGTGACCCAAGAAGAGGCCGCTACTTGACAGCATGCGCCATGTTCAGAGGAAGAATGAGCACCAAGGAAGTCGACGAGCAGATGAGCAATGTTCAGAACAAGAACAGCAGCTACTTCGTCGAGTGGATCCCACACAACACCAAGTCCAGTGTTTGTGACATCCCACCAAAGGGACTTAAGATGTCAGTTACCTTCGTCGGTAACTCGACGGCAATCCAAGATATGTTCAAGAGGGTTTCTGAGCAATTTACGGCCATGTTCAGGAGAAAGGCCTTCTTGCATTGGTATACAGGAGAGGGTATGGACGAGATGGAATTTACAGAAGCAGAATCTAACATGAACGACCTGGTTTCAGAG Toxoplasma_gondii ATGCGTGAGATCGTCCACATCCAGGCCGGCCAGTGCGGCAACCAGATCGGCGCAAAGTTCTGGGAAGTCATCTCCGACGAACACGGCGTCGACCCGACTGGAACGTACACGGGCGACAGCGACTTGCAGCTGGAGAGAATCAATGTGTTCTACAATGAGGCCACCGGAGGACGCTTCGTCCCCCGCGCGATCCTGATGGATCTGGAGCCCGGCACGATGGACAGCGTTCGCGCGGGTCCGTTCGGCCAGCTCTTCCGCCCTGACAACTTTGTCTTTGGTCAGACGGGTGCGGGCAACAATTGGGCCAAGGGCCACTACACCGAGGGAGCGGAGCTCATCGACAGCGTTCTGGACGTGGTGCGCAAGGAGGCCGAGGGCTGCGACTGCCTTCAGGGTTTCCAGATCACTCACAGTCTTGGAGGGGGTACCGGTTCGGGTATGGGTACGCTGCTGATCAGCAAGGTCCGCGAGGAGTACCCCGACCGGATTATGGAGACATTCTCCGTCTTCCCGTCCCCCAAGGTGTCCGACACAGTCGTCGAGCCCTACAACGCGACGCTCTCTGTCCACCAGCTGGTTGAGAACGCCGACGAAGTCCAGGTGATCGACAACGAGGCCCTCTACGACATCTGTTTCCGCACTCTGAAGCTGACCACCCCCACGTACGGTGATCTGAACCATCTGGTCTCCGCGGCGATGAGTGGCGTGACCTGCTCTCTGCGTTTCCCGGGCCAACTCAATAGCGACCTCAGGAAACTCGCGGTCAACCTTATCCCGTTCCCCCGTCTCCACTTCTTCCTGATCGGCTTCGCCCCCCTCACCTCCCGCGGCTCTCAACAGTACCGCGCCCTGACGGTCCCCGAGCTCACCCAACAGATGTTCGACGCCAAGAACATGATGTGCGCCTCCGACCCCCGTCACGGCCGCTACCTGACCGCATGCGCGCTCTTCCGTGGCCGCATGTCCACCAAGGAAGTCGACGAGCAGATGCTGAATGTTCAGAACAAGAACTCTTCCTACTTCGTCGAGTGGATCCCCAACAATATGAAGAGCGCCGTCTGCGACATCCCGCCCAAGGGACTCAAGATGAGCGTCACATTCGTTGGAAACAGCACTGCTATTCAGGAAATGTTCAAACGTGTCTCCGAGCAGTTCACCGCTATGTTCAGGAGAAAGGCTTTCCTTCACTGGTACACTGGCGAAGGTATGGACGAGATGGAGTTCACTGAAGCGGAGTCGAACATGAACGACTTGGTGTCTGAG ; END; BEGIN MacClade; Version 4.0 86; LastModified -866659883; FileSettings editor '0' '0' '1' '1'; Singles 000; Editor 11011001111111100100010010 '1' '12' Geneva '9' '216' '1' all; EditorPosition '46' '6' '771' '1067'; TreeWindowPosition '46' '6' '807' '1102'; ListWindow Characters closed Geneva '9' '50' '10' '129' '406' 000; ListWindow Taxa closed Geneva '9' '50' '10' '465' '572' 1000000; ListWindow Trees closed Geneva '9' '50' '10' '276' '490'; ListWindow TypeSets closed Geneva '9' '50' '10' '276' '490'; ListWindow WtSets closed Geneva '9' '50' '10' '276' '490'; ListWindow ExSets closed Geneva '9' '50' '10' '276' '490'; ListWindow CharSets closed Geneva '9' '50' '10' '276' '490'; ListWindow TaxSets closed Geneva '9' '50' '10' '276' '490'; ListWindow CharPartitions closed Geneva '9' '50' '10' '276' '490'; ListWindow CharPartNames closed Geneva '9' '50' '10' '276' '490'; ListWindow WtSets closed Geneva '9' '50' '10' '276' '490'; ChartWindowPosition '52' '30' '782' '1092'; 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END; BEGIN TREES; Title 'Trees from "S8_BetaTubulin_mRNA.tree"'; LINK Taxa = Taxa; TRANSLATE 1 Adenoides_eludens, 2 Alexandrium_frundyense, 3 Alexandrium_minutum, 4 Amphidinium_carterae, 5 Azadinium_spinosum, 6 Crypthecodinium_cohnii, 7 Cryptosporidium_parvum, 8 Eimeria_tenella, 9 Gymnodinium_aureolum, 10 Gymnodinium_beii, 11 Heterocapsa_triquetra, 12 Karenia_brevis, 13 Karlodinium_veneficum, 14 Lepididinium_chlorophorum, 15 Lingulodinium_polyedrum, 16 Oxyrrhis_marina, 17 Pentapharsodinium_dalei, 18 Perkinsus_marinus, 19 Polarella_glacialis, 20 Prorocentrum_minimum, 21 Protodinium_simplex, 22 Scrippsiella_trochideae, 23 Symbiodinium_sp_C3, 24 Thecadinium_kofoidii, 25 Theileria_parva, 26 Toxoplasma_gondii; TREE tree_1 = ((((((((((14:0.0225261985748387,17:0.031244355176702626):0.00824740129690027,9:0.01584268306424949):0.004281555609682519,(4:0.04543116929168678,5:0.027204885979227544):0.0071455182857546595):0.003562321508462918,(((15:0.008118883201334165,22:0.010846210038566784):0.012864158357151934,12:0.02025365725670647):0.0051267286894056685,13:0.02668718162319389):0.005560530093161153):0.00474193983212523,(((6:0.04543169902717936,20:0.020818546237786117):0.008941348507306657,2:0.010338407596190702):0.00458411404812048,3:0.022601440052573418):0.005644939793912063):1.3410491816467918E-6,((((19:0.017691378231266153,21:0.016105020903428746):0.006487049589102845,23:0.03803662121693979):0.002303785530456459,10:0.055461074986187214):0.011589226080224002,(24:0.00863269405951822,1:0.024936561318438577):0.004106546067052186):0.0030631511782949206):0.0029458055194162003,11:0.008731438889633347):0.026291331048686084,16:0.05096266518782591):0.028405369312602208,18:0.0402221451631469):0.016277973050981113,(((7:0.13336749451821223,25:0.10646823776331066):0.04715495618257043,8:0.034554031682330205):0.005497115045863282,26:0.038189559017675095):0.016277973050981106); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1345537997053; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 8497836517322455330; tell It; setDefaultOrder 0 1 2 3 4 5 6 7 8 9 11 12 13 14 15 16 17 18 19 20 10 21 22 24 23 25; attachments ; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 3126976006331657268; mqVersion 275; checksumv 0 3 729061004 null getNumChars 1263 numChars 1263 getNumTaxa 26 numTaxa 26 short true bits 1152921504606846991 states 15 sumSquaresStatesOnly 610040.0 sumSquares -1.0071922264245415E22 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 135; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 818 694; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #8497836517322455330 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #8497836517322455330; getWindow; tell It; newAssistant #mesquite.lists.DefaultTaxaOrder.DefaultTaxaOrder; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 683 627; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.sort; endTell; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #3126976006331657268 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; rowNamesWidth 284; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 683 627; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; endTell; setActive; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.chromaseq.ColorQuality.ColorQuality; tell It; toggleAmbiguities on; toggleMarks on; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; getEmployee #mesquite.chromaseq.SourceFileInfoEditor.SourceFileInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;