#NEXUS [written Tue Aug 21 10:34:14 CEST 2012 by Mesquite version 2.75 (build 566) at 1x-193-157-241-103.uio.no/193.157.241.103] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=43; TAXLABELS Adenoides_eludens Akashiwo_sanguinea Alexandrium_affine Alexandrium_fundyense Alexandrium_minutum Amphidinium_carterae Amphidinium_massarti Amphidinium_mootonorum Azadinium_spinosum Ceratium_longipes Ceratocorys_horrida Crypthecodinium_cohnii Cryptoperidiniopsis_brodyi Dinophysis_acuminata Eimeria_tenella Gambierdiscus_toxicus Gonyaulax_cochlea Gymnodinium_aureolum Gymnodinium_catenatum Hematodinium_sp Heterocapsa_triquetra Karenia_brevis Karlodinium_veneficum Lepidodinium_chlorophorum Lingulodinium_polyedrum Oxyrrhis_marina Perkinsus_marinus Pfiesteria_piscicida Polarella_glacialis Prorocentrum_donghaiense Prorocentrum_lima Prorocentrum_micans Prorocentrum_minimum Protoceratium_reticulatum Protodinium_simplex Pseudopfiesteria_shumwayae Pyrocystis_lunula Pyrocystis_noctiluca Scrippsiella_sweeneyae Scrippsiella_trochoideae Symbiodinium_c3 Symbiodinium_microadriaticum Toxoplasma_gondii ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=1034; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Adenoides_eludens tgtcctcttcagatcaattttttttggaatcta-ggttttttattaggagtttctattatattacaaatttgtaca--ggaatcttcttagctttacattatacatcagatcttaattcagcatattatcaaattttctttcttattagagaagtctattat-ggatggtgtttacgttattttcattctagtggagcatcatttgtctttctttttctatttctacatcttggaagagctatgttttatggttcatacttttataatccaaatacctatttttcaggaattcttcttctcttcttagcaatggctacagcatttatgggttatgtcttaccttttggacaaatgagtttctgg-ggagctacagtaattacaaatttattatct-ccttttccatctttagtagaatggctttgt-ggaggatattgtgttcacagtccaacattgaagaggttctttctctttcattttcttttaccatttctaatttgtggttttgcaattcttcatcttttttatcttcattttctatcttctaataatcctttgaggaattcaactaat---aataaaatcccatttttccctttcatttttataaaagatttcttt-ggtcttatattaattctttgtctatattttcttcaaactcatttcgggatctcttctttatcacatccagataatgcattagaagcttctgcattacttactcctttacatatagtacctgaatggtatttcctatgccaatatgctatgttaaaagctgtgcctaacaaaaatgcaggattcattatcttattaacttctatcttcgctctctttttctttggagaaattaggaatctgacaactttgtgtctc------------cttaat---------------aataatggtttttctttt------tctctt------tcatttttctttctttct------------------------------------------------------tttctttcttttctt Akashiwo_sanguinea tgtcctcttcagataaattttttttggaatctg-ggttttttattaggagttgctattatgttacaaattatcaca--ggaatcttcttagctttacattatacatcagatctttattcagcatattttagtattttcttccttattagagaagtctattat-ggatggtctttacgttattttcattctagtggtgcatcatttgtctttctttttctatttctacatcttggaagagctatgttttatggttcatacttttataatccaaatacttggttttcaggaatttttcttctcttcttcttaatggctatagcatttatgggttatgtcttaccttttggacaaatgagtttctgg-ggagctacagtaattacaaatttattatct-tcaattccatctttcgtagaatggctttgt-ggaggatattgtgttcacaatccaactttgaagaggttcactctctttcattttcaactcccatttcttgtctgtggttttgtagttcttcatcttttttatcttcattttcattcttctaataatcctttgaggttaaatacaaat---aataaaatcccatttttccctttcatttttcaaaaagatttcttt-ggtttaactctaattctctgtctatattttcttcaaactcattatgggatctcttctctctcacatccagataatgcattagaagcttgtgcattacttactcctttacatatagtacctgaatggtatttcctatgccaatatgctatcttaaaagctgtgcctaataaaaatgcaggattcatagtcttattttcttctatttcttctttctttttctttggagaaattagaaatcttacaacttttacaaga------------ttaaat---------------aataat------ggtttt------tctctt------tcatttttctttctttct------------------------------------------------------tatctttcatttctt Alexandrium_affine tgtcctcttcagataaattttttttggaatctg-ggttttttattaggagttgctattattttacaaattatcaca--ggaatcttcttagctttacattatacatcagatcttaattcagcatattttagtcttttctttcttattagagaagtctattat-ggatggtgtttacgtctttttcattctagtggagcatcatttgtctttctttttctatttctacatcttggaagagctatgttttatgcttcatacttttataatccaaatacttggttttcaggaattcttcttggaatcttcttaatggctatagcatttatgggttatgtcttaccttttggacaaatgagtttctgg-ggagctacagtaattactaatttattatct-ccttttccatctttagtagaatggatttgt-ggaggatattgtgttcacagtccaacattgaagaggttctttctctttcattttcaactcccatttcttctttgtggttttgcaattctccatcttttttatcttcattttctatcttctaataatcctttaaggaattcaacaaat---aataaaatcccatttttccctttcattcttcaaaaagatttcttt-ggtctcattctagttctctgtctatattttcttcaaactcatttcggggtctcttctctctcacatccagataatgccttagaagcttgtgcattacttactcctttacatatagtacctgaatggtatttcctatgccaatatgctatgttaaaagctgtgcctaacaaaaatgcaggattcataatcttattcacttctatcctctctctctttttctttggagaaattagaaatctaacaactttgtgtgtc------------ttacctttg---------gtcaataat------ggtttt------tctctt------tcatttttctttctttct------------------------------------------------------tttctttcttatctt Alexandrium_fundyense TGTCCTCTTCAGATAAATTTTTTTTGGAATCTG-GGTTTTTTATTAGGAGTTGCTATTATTTTACAAATTATCACA--GGAATCTTCTTAGCTTTACATTATACATCAGATCTTAATTCAGCATATTTTAGTCTTTTCTTTCTTATTAGAGAAGTCTATTAT-GGATGGTGTTTACGTCTTTTTCATTCTAGTGGAGCATCATTTGTCTTTCTTTTTCTATTTCTACATCTTGGAAGAGCTATGTTTTATGCTTCATACTTTTATAATGCAAATACTTGGTTTTCAGGAATTCTTCTTGGAATCTTCTTAATGGCTATAGCATTTATGGGTTATGTCTTACCTTTTGGACAAATGAGTTTCTGG-GGAGCTACAGTAATTACTAATTTATTATCT-CCTTTTCCATCTTTAGTAGAATGGATTTGT-GGAGGATATTGTGTTCACAGTCCAACATTGAAGAGGTTCTTTCTCTTTCATTTTCAACTCCCATTTCTTCTTTGTGGTTTTGCAATTCTCCATCTTTTTTATCTTCATTTTCTATCTTCTAATAATCCTTTAAGGAATTCAACAAAT---AATAAAATCCCATTTTTCCCTTTCATTCTTCAAAAAGATTTCTTT-GGTCTCATTCTAGTTCTCTGTCTATATTTTCTTCAAACTCATTTCGGGGTCTCTTCTCTCTCACATCCAGATAATGCCTTAGAAGCTTGTGCATTACTTACTCCTTTACATATAGTACCTGAATGGTATTTCCTATGCCAATATGCTATGTTAAAAGCTGTGCCTAACAAAAATGCAGGATTCATAATCTTATTCACTTCTATCCTCTCTCTCTTTTTCTTTGGAGAAATTAGAAATCTAACAACTTTGTGTGTC------------TTACCTTTG---------GTCAATAAT------GGTTTT------TCTCTT------TCATTTTTCTTTCTTTCT------------------------------------------------------TTTCTTTCTTATCTT Alexandrium_minutum TGTCCTCTTCAGATTAATTTTTTTtGGAATCTG-GGTTTTTTATTAGGAGTTGCTATTATTTTACAAATTATCACA--GGAATCTTCTTAGCTTTACATTATACATCAGATCTTAATTCAGCATATTTTAGTCTTTTCTTTCTTATTAGAGAAGTCTATTAT-GGATGGTGTTTACGTCTTTTTCATTCTAGTGGAGCATCATTTGTCTTTCTTTTTCTATTTCTACATCTTGGAAGAGCTATGTTTTATGCTTCATACTTTTATAATCCAAATACTTGGTTTTCAGGAATTCTTCTTGGAATCTTCTTAATGGCTATAGCATTTATGGGTTATGTCTTACCTTTTGGACAAATGAGTTTCTGG-GGAGCTACAGTAATTACTAATTTATTATCT-CCTTTTCCATCTTTAGTAGAATGGATTTGT-GGAGGATATTGTGTTCACAATCCAACATTGAAGAGGTTCTTTCTCTTTCATTTTCAACTCCCATTTCTTCTTTGTGGTTTTGCAATTCTCCATCTTTTTTATCTTCATTTTCTATCTTCTAATAATCCTTTAAGGAATTCAACAAAT---AATAAAATCCCATTTTTCCCTTTCATTCTTCAAAAAGATTTCTTT-GGTCTCATTCTAGTTCTCTGTCTATATTTTCTTCAAACTCATTTCGGGGTCTCTTCTCTCTCACATCCAGATAATGCCTTAGAAGCTTGTGCATTACTTACTCCTTTACATATAGTACCTGAATGGTATTTCCTATGCCAATATGCTATGTTAAAAGCTGTGCCTAACAAAAATGCAGGATTCATAATCTTATTCACTTCTATCCTCACTCTCTTTTTCTTTGGAGAAATTAGAAATCTAACAACTTTGTGTGTC------------TTACCTTTG---------GTCAATAAT------GGTTTT------TCTCTT------TcATTTTTCTTTCTTTCT------------------------------------------------------TTTCTTTCTTATCTT Amphidinium_carterae TGTCCTCTTCATATTAATTTTTATTGGAATATT-GGTTTCTTATTAGGTATTACTATTATTATACAAATATTTACT--GGTATTATACTTACTTTATATTATAATTCTGATATTAATTTAGCATATTTTACAATTTATTTTATTATTAGAGAAGTTTATATT-GGTTATTCTTTACATTATATTCATTCTAATACTCCTACATTCATATTCCTTCTATTATACTTACATATTTATAGAGGTATATATTATTGTTCATATTTCTATAACCCTAATACATTCTCTACTGGTATTATTTTATATTTATTATTAATGGTTATTGCATTTATTGGATATGTATTACCTTTTGGACAGATGAGTTTATGG-GGAGCTACTGTTATTACAAATTTATTATCT-TCTATACCTTCTGTAATAACTTATATACTA-GGTTCATATTCTATATCTAATCCAACATTAAAAAGATTCTTTATTTTCCATTTTATATTACCATTCATTCTCTTAATATTTCTTAGTATTCATATATTTTATCTACATTTTAATTCATCTAATAATCCATTATCTATAAATACTAAT---AATAAAATACCTTTCTTTATTCTCATAATCATTAAGGATATATAT-TCTCTCTTATTATTACTAGTAATTATTATAATACAAATATATTTTGGTGTAACATCTTTATCACATCCAGATAATTCTTTACAAGCTAATTCTTTAATAACACCTTTACATATTCTTCCTGAATGGTATTTCTTATGTCAATATTCTATTTTAAAAGGTATCCCAAATAAAAATTCTGGATTCATTTTTCTACTTTCTAGTATCCTTATATTATTATTATTACCAGAAATTATTAATTTAACAACTTTTATAAGA------------TTATCACAT---------TGTAATAAT------CCGACA------TTAATT------TCCTCTTTTAGTCTATCA------------------------------------------------------TTTTTATCTCTAATT Amphidinium_massarti --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GG-GGAGCTACTGTTATAACAAATTTATTATCT-TCTATACCATCTTTAATAGAATGGATTTGT-GGAGGATATTGTGTTCACAATCCAACTTTGAAAAGATTCTTTATATTACATTTCATTTTACCTTTTATACTTTATTCTTTATTAGTATTACATATTTTTTACTTACATTTTAACTCTTCTAATAATCCTTTAAGATTAAATACTAAT---AATAAAATACCTTTTTATCTAATGATTTTACATAAAGATTTATAT-ACTTTCATACTAACTTTCTGTTTATATTTTCTTCAAACTCATTTTGGTATATCTTCTCTCTCACATCCAGATAATGCATTAGAAGCTTGTGAATTACTTACACCTTTACATATAGTACCTGAATGGTATTTCTTATGTCAATATGCTATTTTAAAAGGTATACCCAATAAGAATTCAGGATTCATAATATTCTTAACTTCTATACTCATTTTATTTTTGTTTGGAGAAATTAAGAATCTAACTATTTATACAAGA------------TTATCTCAT---------TGTAATAAT------GGTTTT------TCAATT------TCCTCTTTCTTACTTTCA------------------------------------------------------TTTGGTACTTTTTCT Amphidinium_mootonorum ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ggttatgttttaccttttggacagatgagtttttgg-ggagcaacaGTAATTACAAATTTATTATCT-CCTTTTCCATCTTTAATAGAATGGgtttgt-ggaggaTATTGTGTTCACAATCCAACATTGAAGAGGTTCTTTCTTTTtcATTTTCAAtTCCCATTTTGGCTTTGTGCTTTTATAATTCTTCATCTTTTCTATCTTCATTTTCATTCTTCTAATAATCCTTTGAGGTTAAATACAAAT---AATAAAATCCCATTTTTCCCTTTCATTTTTATTAAAGATTTCTTT-GGTTTTATTCTTATTCTATGTCTATATTTTCTTCAAACTCATTTTGGGATCTCTTCTCTTGGGCATCCAGATAATGCATTAGAAGCTTGTGCATTACTTACTCCCTTACATATAGTTCCTGAATGGTATTTCCTATGCCAATATGCTATGTTAAAAGCTGTGCCTAACAAAAATGCAGGATTCATAATCTTATTAACTTCTATCTTCATACTCTTTTTCTTAGGAGAAATTAGAAATCTAACAACCAATAAAAGA------------TTAATGGAT---------TATAATAAT------GCAAAT------TCTATT------TCATTTTTCTTTTATTCT------------------------------------------------------TTTCTTTCTTTTCTT Azadinium_spinosum ------------------------------------------------------------------------------------------------------------------aattcagcatattttaGTCTTTTCTTTCTTATCAGAGAAGTCTATTAT-GGATGGTGTTTACGTTATTTTCATTCTAGTGGAGCATCATTTGTCTTTCTTTTTCTATTTCTACATCTTGGAAGAGCTATGTTTTATGGTTCATACTTTTATTTTccAAATACTTGGTTTTCAGGAATTCTTCTTTTCTTCTTCTTAATGGGTATAGCATTTATTGGTTATGTCTTACCTTTTGGACAAATGAGTTTCTGG-GGAGCTACAGTAATTACAAATTTATTATCT-CCTTTTCCATCTTTAGTAGAGTGGGTTTGT-GGAGGATATTGTGTTCACAGTCCAACATTGAAGAGGTTCTTTCTCTTTCATTTTCAACTCCCATTTCTTCTTTGTGGTTTTCTTCTTCTTCATCTTTTTTATCTTCATTTTCTATCTTCTAGTAATCCTTTGAGGAATTCAACAAAT---AATAAAATCCCATTTTTCCCTTTCATTTTTCTAAAAGATTTCTTT-GGCCTCATTCTAGTTCTCTGTCTATATTTTCTTCAAACTCATTTCGGGATCTCTTCTCTCTCACATCCAGATAATGCATTAGAAGCTTGTGCATTACTTACTCCTTTACATATAGTGCCTGAATGGTATTTCCTATGCCAATATGCTATGTTAAAAGCTGTGCCTAACAAAAATGCAGGATTCATAATCTTATTAACTTCTATCCTCGTTCTCTTTTTCTTTGGAGAAATTAGAAATCTAACAACTTTGTGTCTC------------TTAAAT---------------AATAAT------AGTTTT------TCTCTT------TCATTTTTCTTTCTTTCT------------------------------------------------------TTTCTTTCTTTTCTT Ceratium_longipes tgtcctcttcagataaattatttttggaatctg-ggttttttattaggagttgctattatattacaaattatcact--ggaatcttcttagctttacattatacatcagatcttaattcagcattttttagtcttttctttcttattagagaagtttattat-ggatggtgtttacgttattttcattctagtggagcatcatttgtctttttttttctatttttacatcttgtaagagctatgttttatggttcatacttttataatccaaaaacttggttttcaggaattcttcttttcttattattaatggctatagcatttatgggttatgtcttaccttttggacaaatgagtttctgg-ggagctacagtaattacaaatttattatct-ccttttccatctttcgtagaatgggtttgt-ggaggatattgtgttcacagtccaacattgaagaggttctttctcattcattttcaactcccatttcttctttgtggttttgcaattcttcatctttattatcttcattttctatcttctactaatcctttgaggaattcaacaaat---aataaaatcccatttttccctttcatttttcaaaaagatttcttt-ggtttcattctaattctctgtctatattttcttcaaactcattttggggtctcttctctctcacatacagataatgccttagaaccttgtgcattactaactcctttacatatagttcctgaatggtatttcctatgccaatatgctatgttaaaagctgtgcctaacaaaaatgcaggattcataatcttattaacttctatcctcattctctttttattgggagaagttagaaatctaacaactttgagtctc------------ttacctttg---------gtcaataat------tgtttt------tctctt------tcatttttctttcaatct------------------------------------------------------tttctttcttttctt Ceratocorys_horrida tgtcctcttcagataaattttttttggaatctg-ggttttttattaggagttgctattatattacaaattatcaca--ggaatcttcttagctttacattatacatcagatcttaattcagcatattttagtcttttctttcttattagagaagtctattat-ggatggtgtttacgttattttcattctagtggagcatcatttgtctttctttttctatttctacatcttggaagagctatgttttatggttcatacttttataatccaaatacttggttttcaggaattcttcttctcttcttcttaatggctatagcatttatgggttatgtcttaccttttggacaaatgagtttctgg-ggagctacagtaattacaaatttattatct-ccttttccatctttagtagaatgggtttgt-ggaggatattgtgttcacagtccttcattgaagaggttctttctctttcattttcaactcccatttcttctttgtggttttgcagttcttcatcttttttatcttcattttctatcttctaataatcctttgaggaattcaacaaat---aataaaatcccatttttccctttcatttttctaaaagatttcttt-ggtctcattctaattctctgtctatattttcttcaaactcatttcggggtctcttctctctcacatccagataatgccttagaagcttgtgcattacttactcctttacatatagtacctgaatggtatttcctatgccaatatgctatgttaaaagctgtgcctaacaaaaatgcaggattcataatcttattaacttctatcttcgctctcattttctttggagaaattagaaatctaacaactttgtgtctc------------ttacctttg---------gtcaataat------ggtttt------tctctt------tcatttttctttctttct------------------------------------------------------tttctttcttttctt Crypthecodinium_cohnii TGTCCTCTTCATATAAATTTTTTTTGGAATATT-GGTTTTCTTCTTGGAATTGCTATTTTATTACAAATTATTACT--GGAATATTCTTATCTTTATATTATATATCAGATATTAATTCAGCATATAATAGTCTTTTTTATATTATTAGAGAAGTATATTAT-GGATGGTATTTACGTTATTTTCATTCTAATGGAGCATCATTTGTATTTATATTTGTATTTATACATTTTGGAAGAGGTATGTTTTATGGTTCATATTATTATAATACAAATACTTGGTTATCAGGAATTGTTATTTTCTTATTATTAATGGTTATAGGATTTATGGGTTATGTCTTACCTTTTGGACAAATGAGTTTTTGG-GGAGCAACTGTAATTACTAATTTATTATCT-CCTTTTTCATCTTTAATAGAATATATATCT-GGAGGATATTGTTTTTCTAATCCAACATTGAAGAGATTCTTTATATTTCATTTTATACTACCATTTGTAGTTTGTGGTTTTGTATTTATACATATATTTTATCTACATTTAATATCTTCTAATAATCCTTTAAGTAATACAATAAAT---AATAAAATACCATTTTTCCCTTTCATATTTATAAAAGATTTATTT-GGTCTCATTATAGTTATCTCTATTTATTTTCTTCAAACTAGTTATGGTATCTCTTCTTTATCACATCCAGATAATTCATTAGAAGCTTGTATATTAATTACTCCTTTACATATAGTACCTGAATGGTATTTCCTATGTCAATATGCTATGTTAAAAGCTATTCCCAATAAAAATGCAGGATTCATAATTTTATTAACTTCTATACTTATTTTCTTAATATTTAGTGAGAATAGAAATATAATAACCTTGTATATA------------TTAAAT---------------AATAAT------GGTTTTTATATATCTATT------TCATTATTCTTCTCTATT------------------------------------------------------TATATTTGTTTCATT Cryptoperidiniopsis_brodyi tgtcctcttcagataaattttttttggaatttt-ggttttcttcttggagttgctattttattacaaattgtcact--ggaatcttcttagctttacattatacatcagatcttaattcagcatattttagtcttttctttcttattagagaagtattctat-ggatggtgtttacgttattttcattctagtggagcatcatttgtctttctttttctatttctacatcttggaagagctatgttttatggttcatacttttataatccaaatacttggttttcaggaattattctcttcctcttcttaatggctatagcatttatgggttatgtcttaccttttggacaaatgagtttctgg-ggagctacagtaattacaaatttattatct-ccttttccatctttaatagaatgggtttct-ggagga---------------tcaacattgaagaggttctttctttttcattttcaattaccatttcttgtttgtggttttgcagttcttcatcttttttatcttcattttctatcttctaataatcctttgaggaattcaacaaat---aataaaatcccatttttcccttacatttttgaaaaagatttcttt-ggtctctttctagttctctctctattattttttcaaactcatttcggggtctcttctctctcacatccagataatgcattagaagcttgtgcattacttactcctttacatatagtacctgaatggtatttcctatgccaatatgctatgttaaaagctgtgccaaacaaaaatgcaggattcataatcttattaacttctatccttattttattactctttggagaaattagaaatctaacaactttgtgtgtc------------ttaaat---------------aataat------agtttt------tctctt------tcatttttcttctctctt------------------------------------------------------tctctttcttttctt Dinophysis_acuminata tgtcctcttcagataaattttttttggaatctg-ggttttttattaggaattgctattatattacaaattatcaca--ggaatcttcttagctttacattatacatcagatcttaattcagcatatttttctcttttctttcttattagagaagtctattat-ggatggtgtttacgttattttcattctagtggagcatcatttgtctttctctttctttttctacatcttggaagaggtatgttttatggttcatacttttataatccaaatacttggttttcaggaattcttattctcttcttcttaatggctatagcattcatgggttatgtcttaccttttggacaaatgagtttctgg-ggagctacagtaattactaatttattatct-ccttttccatctcttatagaatgcgtttgt-ggaggatattgtgttcacagtccaacattgaagaggttctttctctttcattttcttctcccatttcttctctgtggttttataattcttcatcttttttatcttcattttctatcttctaataatcctttgaggaactcaacaaat---aataaaatcccatttttccctttcattcttcataaagatttcttt-ggtcttattctaattctctgtctatattttcttcaaactcatttcggggtctcttctctctcacatccagataatgcattagaagcttgtgcattacttactcctttacatatagtacctgaatggtatttcctatgccaatatgctatgttaaaagctgtgcctaacaaaaatgcaggattcataatcttattaacttctatcttcgctctctttttctttggagaaattagaaatctaacaactttgtctctc------------ttaaat---------------aataat------agtttt------tctctt------tcatttttctttctttct------------------------------------------------------tttatttcttttctt Eimeria_tenella TGTCCAACCAATATGAACTTCCTTTGGAATTTT-GGTTTCTTATTAGGAATTTCTTTTGTTGTCCAAATTGTAACA--GGATTATTATTAGCATCTAGATATACTAGTGAAATGTCACATGCCTTTGCTAGTGTACAACATATTATTCGAGAGGTGTCTTTC-TTTTGGGAATTTAGATTCCTACATGCAACTGGAGCATCCTGCGTATTCTTCTGTCTATTTCTTCATATTCTTCGAGCTCTAGTAATGAGTAGTTATACCTATCTAAGTCTGACATGGATTACTGGACTTATTATCTACTTTATTTCTATCGCAACAGGATTCTTAGGTTATGTACTACCATGGGGTCAAATGAGTTTCTGG-GGTGCTACTGTAATTTGTAACCTACTCTCA-CCAATTCCATACCTTGTAACTTGGTTACTA-GGAGGTTTCTATGTGGATAATCCTACCTTAAAAAGATTCTTTGTATTACATTTCGTACTTCCATTTGTAGCTCTTGTACTTGTAGTTCTACATATTTTCTATCTACATCTTAACGGATCTAGTAACCCACTGGGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Gambierdiscus_toxicus tgtcctcttcagataaattctttttggaatctg-ggttttttattaggaattactattatattacaaattatcaca--ggaatcttcttaggtttacattatacatcagatcttaattcagcatattctagtcttttcttttttattagagaaatctattat-ggatggtgtttacgttatcttcattcatgtggagcatcatttgtctttctttttctatttctacatcttggaagagctatatcttatgcttcatacttttataatccaaatacttggttttcaggaattcttcttggaatcttcttaatggctacagcatttatgggttatgtcttaccttttggacaaatgagtttctgg-ggagctacagtaattactaatttattatct-ccttttccatctttaatagaatgggtttgt-ggaggacattatgtttacaatccaacattgaagaggttctttctctttcattttcaattcccatttcttctttgtggttttagaattcttcatcttttttatcttcattttctatcttctaataattctttcaggaattcaacaaat---aataaaatcccatttttccctttcatttttctaaaagatttcttt-ggtttcattctaattctctgtctatatcttcttcaaactcattttgggatctcttctttctcacatccagataatgccttagaagtttgtggattacttactcctttacatatagtacctgaatggtatttcctatgccaatatgctatgttaaaagctgtgcccaacaaaaatgcaggattcataatcttattcacttctatcttcactttctttatctttggagaaattagaaatctaacaactttgtgtgtc------------ttacctttg---------gtcaataat------ggtttt------tctctt------tcatctttctttctttct------------------------------------------------------cttctttcttatctt Gonyaulax_cochlea tgtcctcttcagataaattttttttggaatctg-ggttttttcttaggagttgctattataatacaaattatcaca--ggaatcttcttagctttacattatacatcagatcttaattcagcatattttagtcttttctttcttattagagaagtctattat-ggatggtgtttacgttattttcattctagtggagcatcatttgtctttctttttctatttctacatcttggaagagctatgttttatggttcatacttttataatgcaaatacttggttttcaggaattcttcttctcttcttcttaatggctatagcatttgttggttatgtcttaccttttggacaaatgagtttctgg-ggagctacagtaattacaaatttattatct-ccttttccatctttagtagaatgggtttgt-ggaggatattgtgttcacagtccttcattgaagaggttctttctctttcattttcaactcccatttcttctttgtggttttgcagttcttcatcttttttatcttcattttctatcttctaataatcctttgaggaattcaacaaat---aataaaatcccatttttccctttcatttttcaaaaagatttcttt-ggttttattctaattctctgtctatattttcttcaaactcatttcggggtctcttctctctcacatccagataatgccttagaagcttgtgcattacttactcctttacatatagtacctgaatggtatttcctatgccaatatgctatgttaaaagctgtgcctaacaaaaatgcaggattcataatcttattaacttctatcttcactctctttttctttggagaaattagaaatctaacaactttctgtctc------------ttacctttg---------gtcaataat------ggtttt------tctctt------tcatttttctttctttct------------------------------------------------------tttctttcttttctt Gymnodinium_aureolum ---------------------------------------------------------------------------------------------------------------cttAATTCCGCATATTTTAGTGTTTTCTTTCTTATACGAGAAGTCTATTAT-GGATGGTGTTTACGTTATTTTCATTCTAGTGGAGCATCATTTGTCTTTTTTTTCCTTCTATTACATCTTGGAAGAGCTATATTTTATGGTTCATACTTTTATAATCCAAATACTTGGTTTTCTGGAATTCTTCTTCTTCTCTTCTTACTGGCTATAGCATTTATGGGTTATGTCTTACCTTTTGGACAAATGAGTTTCTGG-GGAGCTACAgtaATTACAAATTTATTATCT-CCTTTTCCATCTTTAATTGAATGGATTTGT-GGAGGATATTGTGtTCATAATCCAaCATTGAAGAGGTTCTTTCTCTTTCATTTTCtTCTCCCATTTCTTCTTTGTGGTTTTCTCCTTCTTCATCtTTTTTATCTTCATTTTCATTCTTCTAATAATCCTTTGAGGTTAAATACAAAT---AATAAAATCCCATTTTTCCCTTTCATTTTAATAAAAGATTTCTTT-GGTCTCGTTCTAATTCTCTCTCTATATTTTCTTCAAACTCATTTTGGGATCTCTTCTCTCTCACATCCAGATAATGCATTAGAAGCTTGTGCATTACTTACTCCTTTACATATAGTACCTGAATGGTATTTCCTATGCCAATATGCTATGTTAAAAGCTGTGCCCAACAAAAATGCAGGATTCATAACCTTATTAACTTCTATCTTCGCTCTCTTTTTCTTTGGAGAAATTAGAAATCTAACAACTTTTACAAGA------------TTAATGGAT---------TGCAATAAT------GGTTTT------TCTCTT------TCCTTTTTCTTTCTTTTT------------------------------------------------------TTTCTTTCTTTTCTC Gymnodinium_catenatum tgtcctcttcagataaattttttttggaatctg-ggttttttattaggagttgctattatgttacaaattgtcaca--ggaatcttcttagctttacattatacatcagatcttaattcagcatattctagtgttttctttcttattagagaagtctattat-ggatggtgtttacgttattttcattctagtggagcatcatttgtctttctttttctatttctacatctttccagagctatattttatggttcatacttttataatccaaatacttggttttctggaattcttcttttcttcttcttaatggctatagcatttattggttatgtcttaccttttggacaaatgagtttctgg-ggagctacagtaattacaaatttattatct-ccttttccatctttaatagaatgggtttgt-ggaggatattgtgttcacaatccaacattgaagaggttctttctctttcattttcaactcccatttcttctttgtggttttgtagttcttcatcttttttatcttcattttcattcttctaataatcctctcaagataaatacaaat---aataaaatcccatttttccctttcatttttataaaagatttcttt-ggtctcattctaattctctctctatattttcttcaaactcattttgggatctcttctctctcacatccagataatgcattagaagcttgtgcattacttactcctttacatatagtacctgaatggtatttcctatgccaatatgctatgttaaaagctctgcccaacaaaaatgcaggattcataatcttattaacttctatcttcgttctctttttctttggagaaattagaaatctaacaacttttacaaga------------ttaatagat---------tgtaataat------ggttta------ataatt------tcatctttctttctttct------------------------------------------------------tttctttcttttctc Hematodinium_sp TGTCCTAATAACATTAATTATTTTTGGAATATA-GGTTTCTTACTTGGAATATCTATTGTATTACAGTTGATAACA--GGAATATTATTATCATTACATTATACACCACATATTAATTATTCATACTACAGTATTATGTATATTATTAGAGAAGCATATTAT-GGATGGTCTCTACGTTATATACATTCTAATGGTGCATCATTTCTATTTGCTGTATTATTCATTCATGTAGGTAGAGGACTATATTATGGTTCTTATTATTATAATTCAAATAGTTGGTTTTCAGGTATTATTATCTTTATTATGTTAATGGCTATAGCTTTTATTGGATATGTATTACCTTGGGGACAAATGAGTTTTTGG-GGTGCTGCAGTAATTACTAATTTATTATCA-CCCTTTCCTTGTTTAATAGAATGGATATGT-GGAGGTTTCTATATTTCAAATCCAACATTAAAAAGATTCTTTATATTTCATTTTATATTACCTTTCATAGTATGTGGGTTTATAATTATTCATTTTTATTATCTACATTATCTTTCTAGTAATAATTCATTAGGATATAATATTAAT---AATAAAATACTGTTTTTTCCTTTCGAGTTAATTAAAAATATATTT-GGATTATTTATTATTATTACTCTTTATGCAATTCAATTATTTTTTGGTATATTTAGTTTATCACATCCAGATAATGCATTTCAAGTTAATGAATTAGTAACACCTTTACATATAGTACCGGAATGGTATTTTCTATCATATTATGCTATGTTAAAAGCTTTACCTAATAAAAATGCAGGATTCATAATATTACTAACATCTATATTAATATTACTGTTATTTGGAGAAAGTCACTTCCAAACTCTGAATTGTAGT------------------------------------------------------------------------------------------------------------------------------------------------------------ Heterocapsa_triquetra ACTCCACTACAAATTAATACTTTCTGGAACTTT-GGTTTCCTACTTGGTATTACTATTGTTATCCAGATTATTACT--GGTATTTTCTTAACTATTCATTATTCTTCTGACATGTCTAACTCTTTCATGTCTCTATATTTCCTATCTCGTGAAGTTTATTAT-GGTGGTCTTCTACGTTACTTCCATGCTAACGGTGCTTCTTTCGTCTTCCTATTTGCTTTCCTGCATCTAGCTCGTTCTCTATATTATTCTTCTTATTTCTATAATCCTAATACTTTTATTACTGGTATTATCATTTTCCTAATGTTAATGGCTATTGCATTCATTGGTTATGTTCTACCATTCGGTCAGATGTCCTTCTGG-GGTGCTACTGTTATTACTAATCTAATGACT-CCATTCCCTGTTGTAATTGAATATCTACTA-GGTGGTTTTACTGTCTCTAATCCAACTATTAAACGTTTCTTTATTTTCCATTTCATTCTACCATTCGTTATGTTAGCTATTGTTATTCTTCATCTATTCTATCTTCATTACATGTCTTCTAATAATCCACTTCGTATTAATACTAAC---AATAAGATTCCTTTCTTCCCATATCTAGTTCTAAAAGACACTTTC-TCTCTATTCCTTGTTTTTACTCTAATGGGTTTTCAGTCTTTCTTTGGTGTACTTACTCTATCTCATCCAGATAATTCTCTAGAAGCTAATCCTCTAGTTACTCCTCTGCATATTGTTCCAGAATGGTATTTCCTTATCCAGTATGCTATGCTTAAAGCTATTCCTAATAAGAATAGTGGATTTATTATTCTAGTTACTTCTATTACAATTCTATTCTTACTAACTGAATCTAAACATATGACTACTATGGTTACT------------ATTAAT---------------CATTCT------AATCTA------TCTATT------AACTACTTCTTCTTAACTTGTCTTCTATTACTTTATATTGGTGCACAGTATCCAACTGTTACTTATATCTTCTTCGCACGTATTTTA Karenia_brevis tgtcctcttcagataaattttttttggaatctc-ggttttttattaggagttgctattatattacaaattatcaca--ggaatcttcttagctttacattatacatcagatcttagttcagcatattttagtcttttctttcttattagagaagtctattat-ggatggtgtttacgttattttcattctagtggagcatcatttgtctttctttttctatttctacatcttggaagagctctgttctatgcttcatacttttataatccaaatacttggttttcaggaattcttcttctccttttcttaatggctatagcatttatgggttatgtcttaccttttggacaaatgagtttctgg-ggagctacagtaattacaaatttattatct-ccttttccatgtttagtagaatgggtttgt-ggaggatattgtgttcataatccaacattgaagaggttctttctctttcattttcaactcccatttctcctttgtggttttacagttcttcatcttttttatcttcattttcattcttctaataatcctttgaggttaaatacaaat---aataaaatcccatttttccctttcattcttctaaaagatttcttg-ggtttcattttaattctctgtctatattttcttcaagttcattttggcatctcttctctctcacatccagataatgcattagaagcttgtgcattacttactcctttacatatagtacctgaatggtatttcctatgccaatatgctatgttaaaagctgtccctaacaaaaatgcaggattcatagtcttattaacttctatcctcattctctttttctttggagaaattagaaatctaacaacttttacaaga------------ttaatggat---------tgtaataat------ggtttt------tctgtt------tcatttttatttctttct------------------------------------------------------tttttggtctctct- Karlodinium_veneficum tgtcctcttcagataaattttttttggaatctc-ggttttttattagcagttgctattatattacaaattgtcacc--ggaatcttcttagctttacattatacatcagatcttaattcagcatatttttccattttctttcttattagagaagtctattat-ggatggtgtttacgttatctacattctagtggagcttcttttgtctttctttttctttttcttcatcttggaagagctatattttatggttcatacttttataatccaaatagttggttttcaggaattgttcttctctttttcttaatggctatagcatttatgggttatgtattaccttttggacaaatgagtttctgg-ggagctacagtaattacaaatttattatct-ccttttccatgtttagtagaatggatttct-gggggatattgtgttcacagtccaacattgaagaggttctttctctttcattttcaactcccatttctcctttttggttttctaattcttcatcttttttatcttcattttcattcttctaataatcctttgaggttaaatacaaat---aataaaatcccatttttccctttcattcttctaaaagatttcgtt-ggtctccttctagttttctgtctatattttcttcaaactcattttgggatctcttctctctcacatccagataatgcattagaagcttgtgcattacttactcctttacatatagtacctgaatggtatttcctatgccaatatgctatcttaaaagctgtgcctaacaaaaatgcaggattcatagtcttattaacttctatcctcattctcttcttatttggagaaattagaaatctaacaacttttacaaga------------ttaatggat---------tgtaataat------ggtttt------tctatt------tcatttttctttctctct------------------------------------------------------tttctttcttgtctt Lepidodinium_chlorophorum ---------------------------------------------------------------------------------------TTAGCTTTACATTATACATCAGATCTTAATTCAGCATATTGTAGTGTTTTCTTTCTTATTAGAGAAGTCTATTAT-GGATGGTGTTTACGTTATTTTCATTCTAGTGGAGCATCATTTGTATTTCTTTTTCTATTTCTACATCTTGCAAGAGCTATATTTTATGGTTCATACTTTTATAATCCAAATACTTGGTTTTCTGGAATTCTTCTTCTCTTCTTCTTAATGGCTATAGCATTTATGGGTTATGTCTTACCTTTTGGACAAATGAGTTTCTGG-GGAGCTACAGTAATTACAAATTTATTATCT-CCTTTTCCATCTTTAATAGAATGGATTTGT-GGAGGATATTGTGTTCACAATCCAACATTGAAGAGGTTCTTTCTCTTTCATTTTCTTCTTCCATTTCTTCTTTGTGGTTTTGTAGTTCTTCATCTTTTTTATCTTCATTTTCATTCTTCTAATAATCCTCTCAGGTTAAATACAAAT---AATAAAATCCCATTTTTCCCTTTCATTTTTCTAAAAGATTTCTTT-GGTCTCATTCTAATTCTCTCTCTATATTTTCTTCAAACTCATTTTGGGGTCTCTTCTCTCTCACATCCAGATAATGCATTAGAAGCTTGTGCATTACTTACTCCTTTACATATAGTACCTGAATGGTATTTCCTATGCCAATATGCTATGTTAAAAGCTGTGCCTAACAAAAATGCAGGATTCATAATCTTATTAACTTCTATCTTCGTTCTCTTTTTCTTTGGAGAAATTAGAAATCTAACAACTTTTACAAGA------------TTAATAGAT---------TGTAATAAT------GGTTTT------TCTATT------TCATTTTTCTTTTTTTCT------------------------------------------------------TTTCTTTCTTTTCTC Lingulodinium_polyedrum -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTCATTCTAGTGGAGCATCATTTGTCTTTCTTTTTCTATTTCTACATCTTGGAAGAGCTATATCTTATGGTTCATATTTTTATCATTCTCATACTTGGTTTTCAGGAATTCTTCTTTTCTTCTTCTTAATGGCTACAGCATTTATGGGTTATGTCTTACCTTTTGGACAAATGAGTTTCTGG-GGAGCTACAGTAATTACAAATTTATTATCT-CCTTTTCCATCTTTAATAGAATGGGTTTGT-GGAGGACATTATGTTTACAATCCAACATTGAAGAGGTTCTTTCTCTTTCATTTTCAATTCCCATTTCTTCTTTGTGGTTTTAGAATTCTTCATCTTTTTTATCTTCATTTTCTATCTTCTAATAATCCTTTGAGGAATTCAACAAAT---AATAAAATCCCATTTTTCCCTTTCATTTTTCAAAAAGATTTCTTT-GGTTTTATTCTAATTCTCTGTCTATATCTTCTTCAAACTCATTTCGGGATCTCTTCTTTATCACATCCAGATAATGCCTTAGAAGTTTGTGGATTACTTACTCCTTTACATATAGTACCTGAATGGTATTTCCTATGCCAATATGCTATGTTAAAAGCTGTGCCCAACAAAAATGCAGGATTCATAATCTTATTAACTTCTATCTTCACTTTCTTTTTCTTTGGAGAAATTAGAAATCTAACAACTTTGTGTCTC------------TTACCTTTG---------GTCAATAAT------GGGTTT------TCTCTT------TCATTTTTCTTTCTTTCT------------------------------------------------------TTTCTTTCTTTTCTT Oxyrrhis_marina ---------------------------------------CTTCCTTGGATTTACCATTGTTATTCAGATTCTAACA--GGTTTATTTTTAGCTCTACACTACACTCCTGATATCAATTATGCTTTCTTCAGTGTTATGCAGATTATTCGAGAAGTCTATTTT-GGATCTTCTTTTCGCTATATTCATTGTTCTGGTGCCTCTTTTATCTTTGCTTTTATATTTGCTCATATAGCTAGAGCATTATATTATGGCTCTTTCTCCCATAATCCAAGCGTATGGATTTCAGGAATATTACTCTTTATAGTGCTGATGATTATTGCTTTCATCGGTTATGTTCTTCCTTTTGGCTCTATGAGTTTCTGG-GGAGCTACTGTCATTACTAATCTTTTATCT-GCTATTCCTTGTATTATTCAATGGATCTCT-GGAGGTTTATTTGTTCATAATCCAACTCTATCTCGCTTCTTTGTTTTTCATTTTATCTTACCATTGATTTTGCTAGCTTTTATCTTATTTCATCTTTTCTATCTTCATCTATTTTCTAGTACTAATCCATTAGCTTTCTCTTTTGGAATTTCTCAAGATCCTTTCTTCCCTTTTATCTTTTCTAAGGATTTCTTT-GCCTTGTTTATTCTTATACCTTGCTTCTCCTTACAGACTTTCTTTGGCTTTCTTAGTTTCTCTCATCCAGATAATGCTTTTGAAGTTTCTTATTTAAACACTCCTCAACATATTGTTCCTGAATGGTATTTCCTCTCATTTTATGCTATCTTGAAATCTTTACCTAGCAAAAACGCTGGATTCATGCTTATGCTTTCTTTTCTTTTTATCTTATTCCTCTTTATGGAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Perkinsus_marinus ATTAATGATAGTATTAATTATTTATGAAATATAAGGTTATATAATTATGGTAGTAATGATTGTACAAGTAATAACTTAGGCATAATAATAAACTTA---TATATGAAT---ATTAACAATGGTTATAAAGGAATAATATATATAATCAAAGAAATATATTATAGGTTATATATTAAGATATATACATAATAATAATAGTACATTAATATATGTAGTAGTATATTTACATATTATTAGAAATTTATATTATAAAACATATTATTATAATATATTAATATGATATTCTGGAATGATAATGTTATATCAATTAATAATAATTGGTTTCATAGGTTATATATTAGGTTGGGGTCAATTATCATATTGGAGGTATAACAGTAATTATAAACTTAATATCTAGGCATACCATATTTAATATTATTAATATCTAGGTAATTATTATATAACAATTGTAACTATTAAAAGATTATATATAGTACATTTCATATTACCTATAATTTTAATATATGTAGAAATAATACATGTATATTATATTCATTATTTAATAAATAATAATATAGTAGAATATAATGTTAAT---AATAAAATAATATTCAATAATTATATATTAGTAAAAGATAATAATAGGTATAATATTTATATTAAATATTTTTATATTAGAATTAAATAACAATATATTTATAATAGCTGATAATGATAATTTAATAGAAATAAATATATTAGTAACACCAATACATATAATACCAGAATGATATTATTTATACTGATATAGTATATTAAAATTATTACCAAATAAATATAGTGGTTTATATATTGTAGTAAATAGTATATCTATAATAAATATATTATCTGAATACAAAATAGTAATAAGTGAATATAAA------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfiesteria_piscicida tgtcctcttcagataaattttttttggaatttt-ggttttcttcttggagttgctattatattacaaattatcact--ggaatcttattagctttacattatacatcagatcttaattcagcatattttagtcttttctttcttattagagaagtattctat-ggatggtgtttacgttattttcattctagtggagcatcatttgtctttctttttctatttctacatcttggaagagctatgttttatggttcatacttttataatccaaatacttggttttcaggaattattctcttcctcttcttaatggctatagcatttatgggttatgtcttaccttttggacaaatgagtttctgg-ggagctacagtaattacaaatttattatct-ccttttccatctttaatagaatgggtttct-ggaggatattgtgttcacagtccaacattgaagaggttctttctttttcattatcaactcccatttcttgtttgtggtttttcaattcttcatcttttttatcttcattttctatcttctaataatcctttgaggaattcaacaaat---aataaaatcccatttttccctttaatttttgataaagatttcttt-ggtcttattctagttctctgtctatatttttttgaaactcatttcggggtctcttctttatcacatccagataatgcattagaagcttgtgcattacttactcctttacatatagtacctgaatggtatttcctatgccaatatgctatgttaaaagctgtaccaaacaaaaatgcaggattcataatcttattaacttctatcctcattctcttactctttggagaaattagaaatctaacaactttgtgtctc------------ttaaat---------------aataat------agtttt------tctctt------tcatttttattctctctt------------------------------------------------------tctctttcttttctt Polarella_glacialis ------------------------------------------------------------------------------------------------------------------AATTCAGCATATTTTAGTATTTTCTTTCTTATTAGAGAAATCTATTAT-GGATGGTGTTTACGTTATTTTCATTCTAGTGGAGCATCATTTGTCTTTCTTTTTGTATTTCTACATCTTGCAAGAGCTATGTTTTATGCTTCATACTTTTATAATCCAAATACTTGGTTTTCTGGAATTATTCTTCTCTTCTTCTTAATGGGAATAGCATTTATGGGTTATGTCTTACCTTTTGGACAAATGAGTTTCTGG-GGAGCTACAGTAATTACAAATTTATTATCT-CCTTTTCCATCTTTAGTAGAATGGCTTTGT-GGAGGATATTGTGTTTACAATCCAACATTGAAGAGATTCTTTGTCTTTCATTTTCTACTCCCATTTCTCCTTTGTGGTTTTCTAATTCTTCATATTTTTAATCTTCATTTTCTATCGTCTAATAATCCTCTGAGGAATTCAACAAAT---AATAAAATACCATTTTTACCTTTCATTATTAGTAAAGATCTTTAT-GGAAACATATTAATTCTATATCTATATTTTCTTCAAACTCATTTTGGATTCTCGTCTCTCTCACATCCAGATAATGCATTAGAAGCTTGTGCATTACTTACTCCTTTACATATAGTACCTGAGTGGTATTTCCTATGCCAATATGCTATGTTAAAAGCTGTGCCGAATAAAAATGCAGGATTCATTATCCTATTTACTTCTATATTCGTTTTCTTTTATTTTATGAGAAGTGTTTCAGTGTCATATTATTTTATA------------GTCTTTACG---------TGCAGTAGGTTTAATGGTATT------TATCTT------TCATTTTGGTTTCTTTCA------------------------------------------------------TTTCTTTCTTTTGTT Prorocentrum_donghaiense tgtcctcttcagattaattttttttggaatctg-ggttttttattaggagttgctattatgttacaaattgtcaca--ggaatcttcttagctttacattatacatcagatcttaattcagcatattatcaaattttctttcttattagagaagtctattat-ggacggtgtttacgttattttcattctgctggagcatcatttgtatttctatttctattcctacatcttggaagagctatattttatggttcatacttttattcatcttctacttggttttcaggaattcttcttctcttcttcttaatggctatagcatttatgggttatgtcttaccttttggacaaatgagtttctgg-ggagctacagtaattacaaatttattatct-ccttttccatctttagtagaatggatttgt-ggaggatattgtgttcactgtccaacattgaagaggttctttctatttcattttatcttcccatttctcctttgtggttttctttttcttcatcttttttatcttcattttctatcttctaataatcctttgaggaattcaacaaat---aataaaatcccatttttccctttcatttttcttaaagatttcttt-ggtctcattctaattctctgtctatattttcttcaaactcattttcacgtctcttctctctcacatccagataatgcattagaagcttctgcattacttactcctttacatatagtacctgaatggtatttcctatgccaatatgctatgttaaaagctgtgcctaacaaaaatgcaggattcatagtcttattaacttctatctttgctctcttttactttggagaaattagaaatctaacaactttctgtctc------------ttaaat---------------aataat------agtttt------tctatttcaaaatcttatttctttcttctg------------------------------------------------------gttcttacttttctt Prorocentrum_lima tgtcctcttcagatcaattttttttggaatctg-ggtttttctttaggagttgctattatgttacaaattatcaca--ggaatcttcttagctttacattatacatcagatcttaattcagcatattatcaaattttctttcttattagagaagtctattat-ggacggtgtttacgtttttttcattctagtggagcatcaattgtctttttttttctatttctacatcttggaagagctatgttttatggttcatacttttattgtccaaatacttggttttcaggaattcttcttctcttcctcttaatggcgatagcatttatgggttatgtcttaccttttggacaaatgagtttctgg-ggagctacagtaattacaaatttattatct-ccttttccatctttagtagaatggctttgt-ggaggatattgtcttcacagtccaacattgaagaggttctttctctttcactttctactcccatttcttctcattttctttctttttcttcatcttttttatcttcattttctatcttctaataatcctttaaggaattcaacaaat---aataaaatcccatttttccctttcatttttttaaaagatttcttt-ggtcttgttctaattctctgtctatattttcttcaaactcattttggggtctcttctctctcacatccagataatgcattagaagcttgtgcattacttactcctttacatatagtacctgaatggtatttcctatgccaatatgctatcttaaaagctgtgcctaacaaaaatgcaggattgattgtcttattaacttctattttcactctctttttcttctctgaaattagaaatctaacaactttctctcatcctcttggaccactttttggt---------aataataat------ggtctt------tctctt------tcatttttctttctatct------------------------------------------------------tttctctcttttctt Prorocentrum_micans tgtcctcttcagattaattttttttggaatctg-ggttttttattaggagttgctattatgttacaaattgtcaca--ggaatcttcttagctttacattatacatcagatcttaattcagcatattatcaaattttctttcttattagagaagtctattat-ggacggtgtttacgttattttcattctagtggagcatcatttgtctttctatttctatttctacatcttggaagagctatgttttatggttcatacttttattcatcttctacttggttttcaggaattcttcttctcttcttcttaatggctatagcatttatgggttatgtcttaccttttggacaaatgagtttctgg-ggagctacagtaattacaaatttattatct-ccttttccatctttagtagaatggctttgt-ggaggatattgtgttcactgtccaacattgaagaggttctttctctttcattttatcttcccatttctgctttgtggttttctttttcttcatcttttttatcttcattttctatcttctaataatcctttgaggaattcaacaaat---aataaaatcccatttttccctttcatttttcttaaagatttcttt-ggtctcattctaattctctgtctatattttcttcaaactcattttcaggtctcttctctctcacatccagataatgcattagaagcttctgcattacttactcctttacatatagtacctgaatggtatttcctatgccaatatgctatgttaaaagctgtgcctaacaaaaatgcaggattcatagtcttattaacttctatctttgctctctttttatttggagaaattagaaatctaacaactttctgtctc------------ttaaat---------------aataat------actttt------tctctt------tcatttttctttcttctg------------------------------------------------------gttcttacttttcta Prorocentrum_minimum tgtcctcttcagattaattttttttggaatctg-ggttttttattaggagttgctattatgttacaaattgtcaca--ggaatcttcttagctttacattatacatcagatcttaattcagcatattatcaaattttctttcttattagagaagtctattat-ggacggtgtttacgttattttcattctgcgggagcatcatttgtctttctatttctatttctacatcttggaagagctatattttatggttcatacttttattcatcttctacttggttttcaggaattcttcttctcttcttcttaatggctatagcatttattggttatgtcttaccttttggacaaatgagtttctgg-ggagctacagtaattacaaatttattatct-ccttttccatctttagtagaatggatttgt-ggaggatattgtgttcactgtccaacattgaagaggttctttctcattcattttatcttcccatttctcctttgtggttttctttttattcatcttttttatcttcattttctatcttctaataatcctttgaggaattcaacaaat---aataaaatcccatttttccctttcatttttcttaaagatttcttt-ggtcttattctaattctctgtctatattttcttcaaactcattttcacgtctcttctctctcacatccagataatgcattagaagcttctgcattacttactcctttacatatagtacctgaatggtatttcctatgccaatatgctatgttaaaagctgttcccaacaaaaatgcaggattcatagtgttattaacttctatctttgctctctttttctttggagaaattagaaatctaacaactttctgtctc------------ttaaat---------------aataat------agtttt------tctctttcaaaatcttatttctttcttctg------------------------------------------------------gttctttcttttctt Protoceratium_reticulatum tgtcctcttcagataaattttttttggaatctg-ggttttttattaggagttgctattatattacaaattatcaca--ggaatcttcttagctttacattatacatcagatcttaattcagcatattctagtcttttctttcttattagagaagtctattat-ggatggtgtttacgttattttcattctagtggagcatcatttgtctttctttttctatttctacatcttggaagagctatattttatggttcatacttttataatccaaatacttggttttcaggaattcttcttctcttcttcttaatggctatagcatttatgggttatgtcttaccttttggacaaatgagtttctgg-ggagctacagtaattacaaatttattatct-ccttttccatctttagtagaatgggtttgt-ggaggatattgtgttcacagtccttcattgaagaggttctttctctttcattttcaactcccatttcttctttgtggttttgcagttcttcatcttttttatcttcattttctatcttctaataatcctttgaggaattcaacaaat---aataaaatcccatttttccctttcatttttctaaaagatttcttt-ggtcttattctaattctctgtctatattttcttcaaactcatttcggggtctcttctctctcacatccagataatgccttagaagcttgtgcattacttactcctttacatatagtacctgaatggtatttcctatgccaatatgctatgttaaaagctgtgcctaacaaaaatgcaggattcataatcttattaacttctatcttcgctctcattttctttggagaaattagaaatctaacaactttgtgtctc------------ttacctttg---------gtcaataat------ggtttt------tctgtt------agttttttcatttctatt------------------------------------------------------tttctttcttttctt Protodinium_simplex tgtcctttaattattaattatttctggaatctt-gggtttttattaggaattgctatattattacaaattgtaact--ggtatcttcttagctttacattatacatcagatattaattcagcatattttagtattttctttttaattagagaagtatattat-ggatggtgtttacgttattttcattctagtggagcatcatttgtctttctttttgtatttttacattttgcaagagctatggtttatacatcatatatttataatccaaatacttggttttctggtataattattatattcttcttaatgggaatagcatttatgggttatgtcttaccttttggacaaatgagtttctgg-ggagctacagtaattacaaatttattatct-ccatttccatctttagtagaatggctttgt-ggaggatattgtgttcataatccaacattgaagaggttctttgtctttcattttctacttccatttctattacttggtttactaattttacatatatttaatttacattttctatcttctaataatcctttaaggaattccactaat---aataaaataccattttatcctttcataattagtaaagatttatat-ggaaatatattaattctctatctatattttcttcaaacacattttggattttcttctctctcacatccagataatgcattagaagcatgtgcattacttactcctttacatatagtacctgaatggtatttcttatgtcaatatgctatgttaaaagctgtaccaaataaaaatgcaggattcattatcttatttacttctatattagttttcttttactttatgagaagtgtttcagtgtcattttattattta------------ttatttaca---------tctagtaatctttatagtttt------aatctg------tggttttggtttcttaca------------------------------------------------------tttctttcttttg-- Pseudopfiesteria_shumwayae tgtcctcttcagataaattttttttggaatttt-ggttttcttcttggagttgctattatattacaaattatcact--ggaatcttcttagctttacattatacatcagatcttaattcagcatattttagtcttttctttttcatgagagaagtattctat-ggatggtgtttacgttattttcattctagtggagcatcatttgtctttctttttctatttctacatcttggaagagctatgttttatggttcatacttttataatccaaatacttggttttcaggaattattctcttcctcttcttaatggctatagcatttatgggttatgtcttaccttttggacaaatgagtttctgg-ggagctacagtaattacaaatttattatct-ccttttccatctttaattgaatgggtttct-ggaggatattgtgttcacagtccaacattgaagaggttctttctttttcattttcaactcccatttcttgtttgtggttttgcaattcttcatcttttttatcttcattttctatcttctaataatcctttgaggaattcaacaaat---aataaaatcccatttttccctttcatttttgataaagatttcttt-ggtcttattctagttctctctctatatttttttcaaactcatttcggggtctcttctctctcacatccagataatgcattagaagcttgtgcattacttactcctttacatatagtacctgaatggtatttcctatgccaatatgctatgttaaaagctgtgccaaacaaaaatgcaggattcataatcttattaacttctatcctcattttcttactctttggagaaattagaaatctaacaactttgtgtctc------------ttaaat---------------aataat------agtttt------tctctt------tcatttttcttctctctt------------------------------------------------------tctctttcttttctt Pyrocystis_lunula tgtcctcttcagataaattttttttggaatctg-ggttttttattaggagttgctattatattacaaattatcaca--ggaatcttcttagctttacattatacatcagatcttaattcagcatattttagtcttttctttcttattagagaagtctattat-ggatggtgtttacgttattttcattcatgtggagcatcatttgtctttctttttctatttctacatcttggaagagctatgttttatgcttcatacttttataatccaaatacttggttttcaggaattcttcttggaatcttcttaatggctatagcatttatgggttatgtcttaccttttggacaaatgagtttctgg-ggagctacagtaattactaatttattatct-ccttttccatctttagtagaatggatttct-ggaggatattgtgttcacaatcctacattgaagaggttatttctctttcattttctacttccatttcttctttgtggttttgcaattcttcatcttttttatcttcattttctatcttctaataatcctttgaggaattcaacaaat---aataaaatcccatttttccctttcattcttctaaaggatttcttt-ggtctcattctagttctctgtctatattttcatcaaactcatttcggggtctcttctctctcacatccagataatgccttagaagcttgtgcattacttactcctttacatatagtacctgaatggtatttcctatgccaatatgctatgttaaaagctgtgcctaacaaaaatgcaggattcataatcttattcacttctatcctcactctctttttctttggagaaattagaaatctaacaactttgtgtgtc------------ttacctttg---------gtcaataat------ggtttt------tctctt------tcatttttctttctttct------------------------------------------------------tttctttcttatctt Pyrocystis_noctiluca tgtcctcttcagataaattttttttggaatctg-ggttttttattaggaattgctattatattacaaattatcaca--ggaatcttcttagctttacattatacatcagatcttaattcagcatattttagtcttttctttcttattagagaagtctattat-ggatggtgtttacgttattttcattcatgtggagcatcatttgtctttctttttctatttctacatcttggaagagctatgttttatgcttcatacttttataatccaaatacttggttttcaggaattcttcttggaatcttcttaatggctatagcatttatgggttatgtcttaccttttggacaaatgagtttctgg-ggagctacagtaattactaatttattatct-ccttttccatctttagtagaatggatttct-ggaggatattgtgttcacaatcctacattgaagaggttatttctctttcattttctactcccatttcttctttgtggttttgcaattcttcatcttttttatcttcattttctatcttctaataatcctttgaggaattcaacaaat---aataaaatcccatttttccctttcattcttctaaaggatttcttt-ggtctcattctagttctctgtctatattttcttcaaactcatttcggcgtctcttctctctcacatccagataatgccttagaagcttgtgcattacttactcctttacatatagtacctgaatggtatttcctatgccaatatgctatgttaaaagctgtgcctaacaaaaatgcaggattcataatcttattcacttctatcctcactctctttttctttggagaaattagaaatctaacaactttgtgtgtc------------ttacctttg---------gtcaataag------ggtttt------tctctt------tcatttttctttctttct------------------------------------------------------tttctttcttatctt Scrippsiella_sweeneyae tgtcctattcagataaattttttttggaatttc-ggttttcttcttggagttgctattatattacaaattatcact--ggaatcttcttagctttacattatacatcagatcttaagtcagcatattttagtcttttctttcttattagagaagtcttctat-ggatggtgtttacgttattttcattctagtggagcatcatttgtctttctttttctatttctacatcttggaagagctatgttttatggttcatacttttataatccaaatacttggttttcaggaattgttctcctcctcttcttaatggctatagcatttatgggttatgtcttaccttttggacaaatgagtttctgg-ggagctacagtaattacaaatttattatct-ccttttccatctttaatagaatgggtttct-ggaggatattgtgttcactgtccaacattaaagaggttcttcatttttcactttattcttccatttcttctttgtggttttgcaattcttcatcttttttatcttcattttctatcttctaataatcctttgaggaattcaacaaat---aataaaatcccatttttccctttcatttttcaaaaagatttcttt-ggtctcattctagttctctgtctatattttcttcaaactcatttcggggtctcttctctctcacatccagataatgcattagaagcttgtgcattacttactcctttacatatagtacctgaatggtatttcctatgccaatatgctatgttaaaagctgtgcccaacaaaaatgcaggattcataatcttattaacttctatcctcgctctctttttctttggagaaattagaaatctaacaacattgtgtctc------------ttaaat---------------aataat------agtttt------tctctt------tcaagtttttttctttct------------------------------------------------------tctatttcttttctt Scrippsiella_trochoideae ------------------------------------------------------------------------------GGAATCTTCTTAGCTTTACATTATACATCAGATCTTAGGTCAGCATATTTTAGTCTTTTCTTTCTTATTAGAGAAGTCTTCTAT-GGATGGTGTTTACGTTATTTTCATTCTAGTGGAGCATCATTTGTCTTTCTTTTTCTATTTCTACATCTTGGAAGAGCTATGTTTTATGGTTCATACTTTTATAATCCAAATACTTGGTTTTCAGGAATTGTTCTCTTCCTCTTCttaatggctatagcatttatgggttatgtcttaccttttggacaaatgagtttctgg-ggcgctacagtaattacaAATTTATTATCT-CCTTTTCCATCTTTAATAGAATGGGTTTCT-GGAGGATATTGTGTTCACAGTCCAACATTAAAGAGGTTCTTCATTTTTCACTTTATTCTTCCATTTCTTCTCTGTGGTTTTGCAATTCTTCATCTTTTTTATCTTCATTTTCTATCTTCTAATAATCCTTTGAGGAATTCAACAAAT---AATAAAATCCCATTTTTCCCTTTCATTTTTCAAAAAGATTTCTTT-GGTCTCATTCTAgTTCTCTGTCTATATTTTCTTCAAACTCATTTCGGGGTCTCTTCTCTCTCACATCCAGATAATGCATTAGAAGCTTGTGCATTACTTACTCCTTTACATATAGTACCTGAATGGTATTTCCTATGCCAATATGCTATGTTAAAAGCTGTGCCCAACAAAAATGCAGGATTCATAATCTTATTAACTTCTATCCTCGCTCTCTTTTTCTTTGGAGAAATTAGAAATCTAACAACTTTGTGTCTC------------TTAAAT---------------AATAAT------AGTTTT------TCTCTT------TCAAGTTTTTTTCTTTCT------------------------------------------------------TCTCTTACTTTTCTT Symbiodinium_c3 tgtcctctgatcataaattatttttggaatctt-ggttttttattaggggttgctattttattacaaattatatct--ggaatcttcttagctttacattatacatcagatattaattcagcatattttagtattttctttattattagagaaatatattat-ggatggtgtttacgttattttcattctaatggttcatcatttgtctttcttttggtatttctacatcttggaagagctatattttatggttcatatttttataatccaaatacttggttttctggaattattattgtcttcttcttaatgggaatagcatttatgggttatgtgttacctttaggacaaatgagtttatgg-ggggttacagtaattacaaatttattatct-gcatttccatctttagtagaatggctttgt-ggaggatattgcattcacaatcctacatttaagaggttctttgtctttcattttctacttccatttcttctttgtggttttcttgtttatcatatttttagtctacattttctatcttctaataatcctttaaggaattccactaat---aataaaatagcatttttccctttcattattagtaaagatttatat-ggaaagatgttaattctctatctatattttcttcaagttcatttcggtttctcttctctctcacatccagataatgcattagaagcatgtgcattacttactcctttacatatagtacctgaatggtatttcttatgccaatatgctatgttaaaagctgtgccaaataaaaatgcaggattcattatattatttacttctatcttcgtcttattttactttatgagaagtctttcagtctcattctattttata------------atatttttc---------accagtagatttaatggtttt------tatttg------tgcttttggtttcttctt------------------------------------------------------ttttttcttttatt- Symbiodinium_microadriaticum TGTCCTCTGATCATAAATTATTTTTGGAATCTT-GGTTTTTTATTAGGGGTTGCTATTTTATTACAAATTATATCT--GGAATCTTCTTAGCTTTACATTATACATCAGATATTAATTCAGCATATTTTAGTATTTTCTTTATTATTAGAGAAATATATTAT-GGATGGTGTTTACGTTATTTTCATTCTAATGGTTCATCATTTGTCTTTCTTTTTGTATTTCTACATCTTGGAAGAGCTATGTTTTATGGTTCATATTTTTATAATCCAAATACTTGGTTTTCTGGAATTATTATTGTTTTCTTCTTGATGGGAATAGCATTTATGGGTTATGTGTTACCTTTAGGACAAATGAGTTTATGG-GGGGTTACAGTAATTACAAATTTATTATCT-GCATTTCCATCTTTAGTAGAATGGCTTTGT-GGAGGATATTGCATTCACAATCCTACATTTAAGAGGTTCTTTGTCTTTCATTTTCTACTTCCATTTCTTCTTTGTGGTTTTCTTCTTTATCATATTTTTAGTCTACATTTTCTATCTTCTAATAATCCTTTAAGGAATTCCACTAAT---AATAAAATAGCATTTTTGCCTTTCATTATTAGTAAAGATCTCTAT-GGAATGATATTAATTTCCTATCTATATTTTCTTCAGATTCATTTTGGATTCTCTTCTCTCTCACATCCAGATAATGCATTGGAAGCTTGTGCATTACTTACACCTTTACACATTGTACCTGAATGGTATTTTCTATGCCAATATGCTATGTTAAAAGCTGTACCAAATAAAAATGCAGGATTCATTGTCTTACTAACTTCTATCTTTGTATTATTTTATTTTATGAGAAGTCTTTCAGTATCTTTCTATTTTATC------------GTGTGGGTA---------ACCTCTAGATTTAATAGTTTC------TTTGTA------ATTCTTTGGTTTTTAGTT------------------------------------------------------TTCATATCCTTAATT Toxoplasma_gondii TGTGCTCTAAATCTAAATTCATCTTATAATTTT-GGTTTCTTAGTTGCAATGACCTTTGTACTCCAAATAATTACA--GGTATCACTCTAGCGTTTAGATATACTTCTGAAGCATCTTGTGCATTTGCTAGCGTTCAACATCTAGTTAGAGAAGTAGCAGCA-GGATGGGAATTTAGGATGTTGCATGCTACAACAGCCTCTTTTGTATTCTTGTGTATTTTAATTCACATGACTCGAGGATTGTATAACTGGAGTTATAGTTATTTAACTACCGCTTGGATGTCTGGTTTAGTTTTATATTTACTTACTATAGCCACTGCCTTCCTCGGATATGTTCTACCATGGGGACAAATGAGTTTCTGG-GGTGCTACAGTCATTACAAACCTCCTTTCT-CCAATACCATATTTGGTACCTTGGCTACTT-GGAGGTTACTACGTATCTGATGTAACATTAAAACGATTCTTTGTATTACATTTTATCTTGCCTTTTATTGGTTGTATTATAATAGTTTTACATATCTTCTATTTACATTTAAATGGTTCTAGCAATCCTGCAGGTATTGATACCGCG---CTTAAAGTTGCCTTTTATCCTCATATGTTAATGACAGATGCTAAA-TGTCTATCCTATTTAATTGGATTAATCTTCTTACAAGCGGCTTTTGGTTTGATGGAACTATCACATCCAGATAACTCAATACCTGTCAACCGGTTCGTAACACCACTTCATATCGTACCAGAATGGTATTTTCTAGCATATTATGCGGTGTTAAAAGTAATTCCATCCAAAACCGGTGGTTTGTTAGTATTTATGTCATCTCTGATTAATTTAGGTTTACTTTCTGAGATTCGAGCTTTAAATACCCGAATGTTA------------ATTCGTCAACAGTTCATGACTCGAAAT------GTAGTC------AGTGGA------TGGGTGATTATTTGGGTA------------------------------------------------------TATAGTATGATCTTC ; END; BEGIN MacClade; Version 4.0 86; LastModified -866660607; FileSettings editor '0' '0' '1' '1'; Singles 000; Editor 11011001111111100100010010 '1' '12' Geneva '9' '262' '1' all; EditorPosition '46' '6' '771' '1077'; TreeWindowPosition '46' '6' '799' '1102'; ListWindow Characters closed Geneva '9' '50' '10' '129' '406' 000; ListWindow Taxa closed Geneva '9' '50' '10' '545' '555' 1000000; ListWindow Trees closed Geneva '9' '50' '10' '276' '490'; ListWindow TypeSets closed Geneva '9' '50' '10' '276' '490'; ListWindow WtSets closed Geneva '9' '50' '10' '276' '490'; ListWindow ExSets closed Geneva '9' '50' '10' '276' '490'; ListWindow CharSets closed Geneva '9' '50' '10' '276' '490'; ListWindow TaxSets closed Geneva '9' '50' '10' '276' '490'; ListWindow CharPartitions closed Geneva '9' '50' '10' '276' '490'; ListWindow CharPartNames closed Geneva '9' '50' '10' '276' '490'; ListWindow WtSets closed Geneva '9' '50' '10' '276' '490'; ChartWindowPosition '52' '30' '782' '1092'; 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normal ) Geneva '9' ( normal ) Geneva '9' ( normal ) Geneva '9' ( bold ) Geneva '9' ( normal ) Geneva '9' ( normal ) '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '1' '1' '1' '1' '50' '-10901' '-39' '4' '-40' '0' '1' '2' '1' '8' '0' '0' '0' '2' 1000111000000000000100000111000; MatchChar 00 .; EntryInterpretation 01; ColorOptions 00; TreeTools '0' '5' '4' '0' '10' '4' '0' 00100111111101110; EditorTools '0' '0' '0' '1000' '0' '3' '6' '3' '0' 111010101010001; PairAlign '2' '2' '3' '2' '1' '1' '2' '1' '3' 1010; BothTools '1'; END; BEGIN ASSUMPTIONS; OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS; TYPESET * UNTITLED = unord: 1 - 1034; EXSET * UNTITLED = 34 77 - 78 163 365 396 427 575 - 577 623 879 - 890 900 - 908 918 - 923 930 - 935 942 - 947 966 - 1019; END; BEGIN CODONS; CODONPOSSET * UNTITLED = N: 34 77- 78 163 365 396 427 623, 1: 1 - 31\3 35 - 74\3 79 - 160\3 164 - 362\3 366 - 393\3 397 - 424\3 428 - 620\3 624 - 1032\3, 2: 2 - 32\3 36 - 75\3 80 - 161\3 165 - 363\3 367 - 394\3 398 - 425\3 429 - 621\3 625 - 1033\3, 3: 3 - 33\3 37 - 76\3 81 - 162\3 166 - 364\3 368 - 395\3 399 - 426\3 430 - 622\3 626 - 1034\3; CODONPOSSET CodonPositions = N: 34 77- 78 163 365 396 427 623, 1: 1 - 31\3 35 - 74\3 79 - 160\3 164 - 362\3 366 - 393\3 397 - 424\3 428 - 620\3 624 - 1032\3, 2: 2 - 32\3 36 - 75\3 80 - 161\3 165 - 363\3 367 - 394\3 398 - 425\3 429 - 621\3 625 - 1033\3, 3: 3 - 33\3 37 - 76\3 81 - 162\3 166 - 364\3 368 - 395\3 399 - 426\3 430 - 622\3 626 - 1034\3; CODESET * UNTITLED = universal: 1 - 1034; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 1034; END; BEGIN TREES; Title 'Trees from "S10_COB_mRNA.tree"'; LINK Taxa = Taxa; TRANSLATE 1 Adenoides_eludens, 2 Akashiwo_sanguinea, 3 Alexandrium_affine, 4 Alexandrium_fundyense, 5 Alexandrium_minutum, 6 Amphidinium_carterae, 7 Amphidinium_massarti, 8 Amphidinium_mootonorum, 9 Azadinium_spinosum, 10 Ceratium_longipes, 11 Ceratocorys_horrida, 12 Crypthecodinium_cohnii, 13 Cryptoperidiniopsis_brodyi, 14 Dinophysis_acuminata, 15 Eimeria_tenella, 16 Gambierdiscus_toxicus, 17 Gonyaulax_cochlea, 18 Gymnodinium_aureolum, 19 Gymnodinium_catenatum, 20 Hematodinium_sp, 21 Heterocapsa_triquetra, 22 Karenia_brevis, 23 Karlodinium_veneficum, 24 Lepidodinium_chlorophorum, 25 Lingulodinium_polyedrum, 26 Oxyrrhis_marina, 27 Perkinsus_marinus, 28 Pfiesteria_piscicida, 29 Polarella_glacialis, 30 Prorocentrum_donghaiense, 31 Prorocentrum_lima, 32 Prorocentrum_micans, 33 Prorocentrum_minimum, 34 Protoceratium_reticulatum, 35 Protodinium_simplex, 36 Pseudopfiesteria_shumwayae, 37 Pyrocystis_lunula, 38 Pyrocystis_noctiluca, 39 Scrippsiella_sweeneyae, 40 Scrippsiella_trochoideae, 41 Symbiodinium_c3, 42 Symbiodinium_microadriaticum, 43 Toxoplasma_gondii; TREE tree_1 = ((((((((((((((((((((5:1.4532526468880036E-6,3:1.4532526468880036E-6):1.453252646665959E-6,4:0.0016584469348872588):0.00670253970000978,(38:0.005020330859650146,37:0.0033356597883793526):0.010205705702760692):0.008137473062587164,(16:0.0210963959005388,25:0.0233175811352766):0.023951839026688848):0.005385829704914302,(((34:0.010326491007009997,17:0.010381417560227257):0.001495295064033897,11:1.453252646665959E-6):0.0050164264120600155,10:0.03149649626666973):1.453252646665959E-6):0.004829286934689314,9:0.017412912493344423):1.4532526468880036E-6,((((12:0.19024367412487297,13:0.013598943007885334):0.004551836595507286,(28:0.00994537580513799,36:0.002359909177033215):0.003423840891874308):0.017420859590193905,(39:0.0041515395921545295,40:0.006981891109584248):0.019783695209515395):0.024785766023323497,14:0.03020415625054418):0.001542185949373831):0.005031573336435002,((((33:0.014344856655451377,30:0.00694846479780753):0.011574019324524398,32:0.006113698540974655):0.03152877096297213,31:0.05774882968057904):0.0134469901023051,1:0.044394368585663146):0.007349330414171407):0.005228620445114407,(((41:0.013997913161688302,42:0.07073117613649882):0.06695510619440426,35:0.07777013231260876):0.03197530794648529,29:0.03019379892420604):0.10823725450745458):0.019821482818200176,2:0.04126907157721216):0.007139031288123432,(22:0.028834612870495935,23:0.04164674440034588):0.00813687581281064):0.003644870213576956,8:0.0889124202667877):0.008608713315905181,18:0.0457342186561569):0.00656626710769781,24:0.00784266553996682):0.022452525992045835,19:1.4532526468880036E-6):0.12043384344467634,((27:1.4518920821355028,6:0.11972074469470573):0.3069576152934066,7:0.15019049695580966):0.04152513621926546):0.19278627070115228,20:0.2600881133340003):0.182115333207036,26:0.5767148634634873):0.13035000434063604,21:0.6242660243253515):0.27610344635534056,(43:0.6757175341653399,15:0.2592109677382577):0.2761034463553408); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1345538054497; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 6122704028005047053; tell It; setDefaultOrder 27 1 32 2 35 0 34 33 28 3 9 16 19 15 38 30 6 7 31 11 40 22 36 37 29 10 41 42 17 14 23 26 24 25 8 18 4 5 20 21 13 12 39; attachments ; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 9165254186117781910; mqVersion 275; checksumv 0 3 2731026148 null getNumChars 1034 numChars 1034 getNumTaxa 43 numTaxa 43 short true bits 1152921504606846991 states 15 sumSquaresStatesOnly 1212595.0 sumSquares 4.175881689686E21 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 135; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 800 617; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #6122704028005047053 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #6122704028005047053; getWindow; tell It; newAssistant #mesquite.lists.DefaultTaxaOrder.DefaultTaxaOrder; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 665 550; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.sort; endTell; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #9165254186117781910 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; rowNamesWidth 290; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 665 550; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; endTell; setActive; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.chromaseq.ColorQuality.ColorQuality; tell It; toggleAmbiguities on; toggleMarks on; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; getEmployee #mesquite.chromaseq.SourceFileInfoEditor.SourceFileInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;