#NEXUS [written Wed Mar 28 14:52:19 CEST 2012 by Mesquite version 2.75 (build 564) at romon-9b2ca854d/127.0.0.1] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=17; TAXLABELS Sporothrix_sp_1_CMW9488_MEXICO Sporothrix_sp_1_CMW9491_MEXICO Ophiostoma_cf_abietinum_CMW397_SA O_cf_abietinum_CMW26262_CHINA O_cf_abietinum_CMW26269_CHINA O_cf_abietinum_CMW28030_RUSSIA O_euskadiensis_CMW27318_SPAIN O_euskadiensis_CMW27898_SPAIN O_euskadiensis_CMW27899_SPAIN O_fusiforme_CMW7131 O_fusiforme_CMW9968_T O_abietinum_CMW22310_T O_lunatum_CMW10563_T Sporothrix_sp_2_CMW9487_MEXICO Sporothrix_sp_2_CMW9489_MEXICO O_stenoceras_CMW2344_SA O_stenoceras_CMW3202_T ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=612; FORMAT DATATYPE = DNA INTERLEAVE GAP = - MISSING = -; MATRIX Sporothrix_sp_1_CMW9488_MEXICO aggacaaggacggcgatggtcagtgaac-ccgtacacgtgattcaaatgcttctcgtcgtctgcgcggag------------------------------ Sporothrix_sp_1_CMW9491_MEXICO aggacaaggacggcgatggtcagtgaac-ccgtacacgtgattcaaatgcttctcgtcgtctgcgcggag------------------------------ Ophiostoma_cf_abietinum_CMW397_SA aggacaaggacggcgatggtcagtgaac-ccttatacgtgtttcgaatgcttctcgacgtctgcgcggag------------------------------ O_cf_abietinum_CMW26262_CHINA aggacaaggacggcgatggtcagtgaac-ccttatacgtgtttcgaatgcttctcgacgtctgcgcggag------------------------------ O_cf_abietinum_CMW26269_CHINA aggacaaggacggcgatggtcagtgaac-ccttatacgtgtttcgaatgcttctcgacgtctgcgcggag------------------------------ O_cf_abietinum_CMW28030_RUSSIA aggacaaggacggcgatggtcagtgaac-ccttatacgtgtttcgaatacttctcgtcgtctgcgcggag------------------------------ O_euskadiensis_CMW27318_SPAIN aggacaaggacggcgatggtcagtgaac-ccgtacacgtgattcaaatgcttctcgtcgtctgcgcggag------------------------------ O_euskadiensis_CMW27898_SPAIN aggacaaggacggcgatggtcagtgaac-ccgtacacgtgattcaaatgcttctcgtcgtctgcgcggag------------------------------ O_euskadiensis_CMW27899_SPAIN aggacaaggacggcgatggtcagtgaac-ccgtacacgtgattcaaatgcttctcgtcgtctgcgcggag------------------------------ O_fusiforme_CMW7131 aggacaaggacggcgatggtcagtgaac-ccttatacgtgtttcgaatgcttctcgtcgtctgcgcggag------------------------------ O_fusiforme_CMW9968_T aggacaaggatggcgatggtcagtgaac-ccttatacgtgtttcgaatgcttctcgtcgtctgcgcggag------------------------------ O_abietinum_CMW22310_T aggacaaggacggcgatggtcagtgaac-ccttatacgtgtttcgaatgcttctcgtcgtctgcgcggag------------------------------ O_lunatum_CMW10563_T aggacaaggacggcgatggtcagtgaac-ccttatacgtgtttcgattgcttctcgtcgtctgcgcggag------------------------------ Sporothrix_sp_2_CMW9487_MEXICO aggacaaggacggcgatggtcagtgaac-ccgtatacgtg------------------------------------------------------------ Sporothrix_sp_2_CMW9489_MEXICO aggacaaggacggcgatggtcagtgaac-ccgtatacgtg------------------------------------------------------------ O_stenoceras_CMW2344_SA aggacaaggacggcgatggtcagtgaacaccctctatgtacttcgaattgcttttgccgtctgcgcggcgcgctggacacccgttcgccgccattttcgg O_stenoceras_CMW3202_T aggacaaggacggcgatggtcagtgaacaccctctatgtacttcgaattgcttttgccgtctgcgcggcgcgctggacacccgttcgccgccattttcgg Sporothrix_sp_1_CMW9488_MEXICO ----gcacccgctcacatatcgcactcagaacagttccagctgacactgtttttc-ttttcccctcaacataggccagatcaccaccaaggagctcggca Sporothrix_sp_1_CMW9491_MEXICO ----gcacccgctcacatatcgcactcagaacagttccagctgacactgtttttc-ttttcccctcaacataggccagatcaccaccaaggagctcggca Ophiostoma_cf_abietinum_CMW397_SA ----gcacccgctcgcatattacactcagaacagttccagctgacactgtttttc-ttttcccctcaacataggccagatcaccaccaaggagctcggca O_cf_abietinum_CMW26262_CHINA ----gcacccgctcgcatattacactcagaacagttccagctgacactgtttttc-ttttcccctcaacataggccagatcaccaccaaggagctcggca O_cf_abietinum_CMW26269_CHINA ----gcacccgctcgcatattacactcagaacagttccagctgacactgtttttc-ttttcccctcaacataggccagatcaccaccaaggagctcggca O_cf_abietinum_CMW28030_RUSSIA ----gcacccgctcgcataccacactcagaacagttccagctgacactgtttttc-ttttccccccaacataggccagatcaccaccaaggagctcggca O_euskadiensis_CMW27318_SPAIN ----gcacccgctcacatatcgcactcagaacagttccagctgacactgtttttc-ttttcccctcaacataggccagatcaccaccaaggagctcggca O_euskadiensis_CMW27898_SPAIN ----gcacccgctcacatatcgcactcagaacagttccagctgacactgtttttc-ttttcccctcaacataggccagatcaccaccaaggagctcggca O_euskadiensis_CMW27899_SPAIN ----gcacccgctcacatatcgcactcagaacagttccagctgacactgtttttc-ttttcccctcaacataggccagatcaccaccaaggagctcggca O_fusiforme_CMW7131 ----gcacccgctcgcatatcacactcagaacagttccagctgacactgtttttc-ttttcccctcaacataggccagatcaccaccaaggagctcggca O_fusiforme_CMW9968_T ----gcacccgctcgcatatcacactcagaacagttccagctgacactgtttttc-ttttcccctcaacataggccagatcaccaccaaggagctcggca O_abietinum_CMW22310_T ----gcacccgctcgcatatcacactcagaacagttccagctgacactgtttttc-ttttcccctcaacataggccagatcaccaccaaggagctcggca O_lunatum_CMW10563_T ----gcacccgctcgcatatcacactcagaacagttccagctgacactgtttttctttttcccctcaacataggccagatcaccaccaaggagctcggca Sporothrix_sp_2_CMW9487_MEXICO ------atccgctcgcatatcgcactcagaacagttccagctgacactgtttttc-ttttcccctcaacataggccagatcaccaccaaggagctcggca Sporothrix_sp_2_CMW9489_MEXICO ------atccgctcgcatatcgcactcagaacagttccagctgacactgtttttc-ttttcccctcaacataggccagatcaccaccaaggagctcggca O_stenoceras_CMW2344_SA tttcataaccgcccgcataacgcacgaagtgcagttccagctgacactg----tc-tatccccctctacacaggccagatcaccaccaaggagctcggca O_stenoceras_CMW3202_T tttcataaccgcccgcataacgcacgaagtgcagttccagctgacactg----tc-tatccccctctacacaggccagatcaccaccaaggagctcggca Sporothrix_sp_1_CMW9488_MEXICO ccgtcatgcgctcgctcggccagaacccctccgagtccgagctgcaggacatgatcaacgaggtcgacgccgacaacaacggcaccattgatttccctgg Sporothrix_sp_1_CMW9491_MEXICO ccgtcatgcgctcgctcggccagaacccctccgagtccgagctgcaggacatgatcaacgaggtcgacgccgacaacaacggcaccattgatttccctgg Ophiostoma_cf_abietinum_CMW397_SA ccgtcatgcgctcgctcggccagaacccctccgagtccgagctgcaggacatgatcaacgaggtcgacgccgacaacaacggcaccattgactttcctgg O_cf_abietinum_CMW26262_CHINA ccgtcatgcgctcgctcggccagaacccctccgagtccgagctgcaggacatgatcaacgaggtcgacgccgacaacaacggcaccattgactttcctgg O_cf_abietinum_CMW26269_CHINA ccgtcatgcgctcgctcggccagaacccctccgagtccgagctgcaggacatgatcaacgaggtcgacgccgacaacaacggcaccattgactttcctgg O_cf_abietinum_CMW28030_RUSSIA ccgtcatgcgctcgctcggccagaacccctccgagtccgagctgcaggacatgatcaacgaggtcgacgccgacaacaacggcaccattgacttccctgg O_euskadiensis_CMW27318_SPAIN ccgtcatgcgctcgctcggccagaacccctccgagtccgagctgcaggacatgatcaacgaggtcgacgccgacaacaacggcaccattgatttccctgg O_euskadiensis_CMW27898_SPAIN ccgtcatgcgctcgctcggccagaacccctccgagtccgagctgcaggacatgatcaacgaggtcgacgccgacaacaacggcaccattgatttccctgg O_euskadiensis_CMW27899_SPAIN ccgtcatgcgctcgctcggccagaacccctccgagtccgagctgcaggacatgatcaacgaggtcgacgccgacaacaacggcaccattgatttccctgg O_fusiforme_CMW7131 ccgtcatgcgctcgctcggccagaacccctccgagtccgagctgcaggacatgatcaacgaggtcgacgccgacaacaacggcaccattgacttccctgg O_fusiforme_CMW9968_T ccgtcatgcgctcgctcggccagaacccctccgagtccgagctgcaggacatgatcaacgaggtcgacgccgacaacaacggcaccattgacttccctgg O_abietinum_CMW22310_T ccgttatgcgctcgctcggccagaacccctccgagtccgagctgcaggacatgatcaacgaggtcgacgccgacaacaacggcaccattgacttccctgg O_lunatum_CMW10563_T ccgtcatgcgctcgctcggccagaacccctccgagtccgagctgcaggacatgatcaacgaggtcgacgccgacaacaacggcaccattgacttccctgg Sporothrix_sp_2_CMW9487_MEXICO ccgtcatgcgctcgctcggccagaacccctccgagtccgagctgcaggacatgatcaacgaagtcgacgccgacaacaacggcaccattgatttccctgg Sporothrix_sp_2_CMW9489_MEXICO ccgtcatgcgctcgctcggccagaacccctccgagtccgagctgcaggacatgatcaacgaagtcgacgccgacaacaacggcaccattgatttccctgg O_stenoceras_CMW2344_SA ccgtcatgcgctcgcttgggcagaacccctccgagtccgagctgcaggacatgatcaacgaggtcgacgccgacaacaacggcaccattgacttccctgg O_stenoceras_CMW3202_T ccgtcatgcgctcgcttgggcagaacccctccgagtccgagctgcaggacatgatcaacgaggtcgacgccgacaacaacggcaccattgacttccctgg Sporothrix_sp_1_CMW9488_MEXICO tatgtttgaccgttacgccgtccatcg--------ttggaccgttggaccgttacagtggcgaaataaggggataagaga--aggcggataagagaaacc Sporothrix_sp_1_CMW9491_MEXICO tatgtttgaccgttacgccgtccatcg--------ttggaccgttggaccgttacagtggcgaaataaggggataagaga--aggcggataagagaaacc Ophiostoma_cf_abietinum_CMW397_SA tacgtttgaccgttacgccgcccgtcg--------ttggaccgttggaccgtta-agtggcgagataaggggataagaga--aggcggatgagagaaacc O_cf_abietinum_CMW26262_CHINA tacgtttgaccgttacgccgcccgtcg--------ttggaccgttggaccgtta-agtggcgagataaggggataagaga--aggcggatgagagaaacc O_cf_abietinum_CMW26269_CHINA tacgtttgaccgttacgccgcccgtcg--------ttggaccgttggaccgtta-agtggcgagataaggggataagaga--aggcggatgagagaaacc O_cf_abietinum_CMW28030_RUSSIA tacgtttgaccgttacgccgtccatcgttggaccattggaccgttggaccgttacggtggcgagataaggggatgagaga--aggcggataagagaaacc O_euskadiensis_CMW27318_SPAIN tatgtttgaccgttacgccgtccatcg--------ttggaccgttggaccgttacagtggcgaaataaggggataagaga--aggcggataagagaaacc O_euskadiensis_CMW27898_SPAIN tatgtttgaccgttacgccgtccatcg--------ttggaccgttggaccgttacagtggcgaaataaggggataagaga--aggcggataagagaaacc O_euskadiensis_CMW27899_SPAIN tatgtttgaccgttacgccgtccatcg--------ttggaccgttggaccgttacagtggcgaaataaggggataagaga--aggcggataagagaaacc O_fusiforme_CMW7131 tacgtttgactgttacgccgtccatcg--------ttggaccgttggaccgttacagtggcgagataaggggataagaga--aggcggataagagaaacc O_fusiforme_CMW9968_T tacgtttgactgttacgccgtccatcg--------ttggaccgttggaccgttacagtggcgagataaggggataagaga--aggcggataagagaaacc O_abietinum_CMW22310_T tatgtttgaccgttacgccgtccatcg--------ttggaccgttggaccgttacagtggcgagataaggggataagaga--aggcggatgagagaaacc O_lunatum_CMW10563_T tacgtttgaccgttacgccgtccatcg--------ttggactgttggaccgttacagtggcgagataaggggataagaga--aggcggataagagaaacc Sporothrix_sp_2_CMW9487_MEXICO tatgtttgaccgttacgccgtccatcg--------ttggaccgttggaccgttgcagtggcgaaataaggggataagaga--aggcggataagagaaacc Sporothrix_sp_2_CMW9489_MEXICO tatgtttgaccgttacgccgtccatcg--------ttggaccgttggaccgttgcagtggcgaaataaggggataagaga--aggcggataagagaaacc O_stenoceras_CMW2344_SA tacgtttggctattggtgttgagcggt--------tacaaaggttggaccgttggagtggcgagataaggggataagaggataggcagataagag----- O_stenoceras_CMW3202_T tacgtttggctattggtgttgagcggt--------tacaacggttggaccgttggagtggcgagataaggggataagaggataggcagataagag----- Sporothrix_sp_1_CMW9488_MEXICO aacagtgtctgctgattacctgttgggccggccacgatacgaatgctgacactgatccctctacagagttcctgaccatgatggcgcgcaagatgaagga Sporothrix_sp_1_CMW9491_MEXICO aacagtgtctgctgattacctgttgggccggccacgatacgaatgctgacactgatccctctacagagttcctgaccatgatggcgcgcaagatgaagga Ophiostoma_cf_abietinum_CMW397_SA aacagtgactacttatcgcctgttgggccggccacgacagcaatgctgaccctgacccttctacagagttcctgaccatgatggcgcgcaagatgaagga O_cf_abietinum_CMW26262_CHINA aacagtgactacttatcgcctgttgggccggccacgacagcaatg------ctgacccttctacagagttcctgaccatgatggcgcgcaagatgaagga O_cf_abietinum_CMW26269_CHINA aacagtgactacttatcgcctgttgggccggccacgacagcaatg------ctgacccttctacagagttcctgaccatgatggcgcgcaagatgaagga O_cf_abietinum_CMW28030_RUSSIA aacagtgtctactggttacctgttgggccggccacgacacgaatgctgaccctgacccctctacagagttcctgaccatgatggcgcgcaagatgaagga O_euskadiensis_CMW27318_SPAIN aacagtgtctactgattacctgttgggccggccacgatacgaatgctgacactgatccctctacagagttcctgaccatgatggcgcgcaagatgaagga O_euskadiensis_CMW27898_SPAIN aacagtgtctactgattacctgttgggccggccacgatacgaatgctgacactgatccctctacagagttcctgaccatgatggcgcgcaagatgaagga O_euskadiensis_CMW27899_SPAIN aacagtgtctactgattacctgttgggccggccacgatacgaatgctgacactgatccctctacagagttcctgaccatgatggcgcgcaagatgaagga O_fusiforme_CMW7131 aacagtgcctactggttacctgttgggccggccacgacacgaatgctgaccctgacccctctacagagttcctgaccatgatggcgcgcaagatgaagga O_fusiforme_CMW9968_T aacagtgcctactggttacctgttgggccggccacgacacgaatgctgaccctgacccctctacagagttcctgaccatgatggcgcgcaagatgaagga O_abietinum_CMW22310_T aacagtgtctactgattacctgttgggccggccacgacacgaatgctgaccctgacccctctacagagttcctgaccatgatggcgcgcaagatgaagga O_lunatum_CMW10563_T aacagtgcctactggttacctgttgggccggccacgacacgaatgctgaccctgacccctctacagagttcctgaccatgatggcgcgcaagatgaagga Sporothrix_sp_2_CMW9487_MEXICO aacagtgtctactgattacctgttgggccggccacgatacgaatgctgacactgatccctctacagagttcctgaccatgatggcgcgcaagatgaagga Sporothrix_sp_2_CMW9489_MEXICO aacagtgtctactgattacctgttgggccggccacgatacgaatgctgacactgatccctctacagagttcctgaccatgatggcgcgcaagatgaagga O_stenoceras_CMW2344_SA ------------------cttgagaagacaacaaccaggacaacac--atgctaacctctctgcagagttcctgaccatgatggcgcgcaagatgaagga O_stenoceras_CMW3202_T ------------------cttgagaagacaacaaccagg--aacac--atgctaacctctctgcagagttcctgaccatgatggcgcgcaagatgaagga Sporothrix_sp_1_CMW9488_MEXICO caccgactccgaggaggagatccgcgaggccttcaaggtctttgaccgcgacaacaacggcttcatctcggctgccgagctgcgtcacgtcatgacgtcg Sporothrix_sp_1_CMW9491_MEXICO caccgactccgaggaggagatccgcgaggccttcaaggtctttgaccgcgacaacaacggcttcatctcggctgccgagctgcgtcacgtcatgacgtcg Ophiostoma_cf_abietinum_CMW397_SA caccgactccgaagaggagatccgcgaggccttcaaggtctttgaccgcgacaacaacggcttcatttcggctgccgagctgcgtcacgtcatgacgtcg O_cf_abietinum_CMW26262_CHINA caccgactccgaagaggagatccgcgaggccttcaaggtctttgaccgcgacaacaacggcttcatttcggctgccgagctgggtcacgtcatgacgtcg O_cf_abietinum_CMW26269_CHINA caccgactccgaagaggagatccgcgaggccttcaaggtctttgaccgcgacaacaacggcttcatttcggctgccgagctgggtcacgtcatgacgtcg O_cf_abietinum_CMW28030_RUSSIA caccgactccgaggaggagatccgcgaggccttcaaggtctttgaccgcgacaacaacggcttcatctcggctgccgagctgcgtcacgtcatgacgtcg O_euskadiensis_CMW27318_SPAIN caccgactccgaggaggagatccgcgaggccttcaaggtctttgaccgcgacaacaacggctttatctcggctgccgagctgcgtcacgtcatgacgtcg O_euskadiensis_CMW27898_SPAIN caccgactccgaggaggagatccgcgaggccttcaaggtctttgaccgcgacaacaacggctttatctcggctgccgagctgcgtcacgtcatgacgtcg O_euskadiensis_CMW27899_SPAIN caccgactccgaggaggagatccgcgaggccttcaaggtctttgaccgcgacaacaacggctttatctcggctgccgagctgcgtcacgtcatgacgtcg O_fusiforme_CMW7131 caccgactccgaggaggagatccgcgaggccttcaaggtctttgaccgcgacaacaacggcttcatctcggctgccgagctgcgtcacgtcatgacgtcg O_fusiforme_CMW9968_T caccgactccgaggaggagatccgtgaggccttcaaggtctttgaccgcgacaacaacggcttcatctcggctgccgagctgcgtcacgtcatgacgtcg O_abietinum_CMW22310_T caccgactccgaggaggagatccgcgaggccttcaaggtctttgaccgcgacaacaacggcttcatctcggctgccgagctgcgtcacgtcatgacgtcg O_lunatum_CMW10563_T caccgactccgaggaggagatccgcgaggccttcaaggtctttgaccgcgacaacaacggcttcatctcggctgccgagctgcgtcacgtcatgacgtcg Sporothrix_sp_2_CMW9487_MEXICO caccgactccgaggaggagatccgcgaggccttcaaggtctttgaccgcgacaacaacggcttcatctcggctgccgagctgcgtcacgtcatgacgtcg Sporothrix_sp_2_CMW9489_MEXICO caccgactccgaggaggagatccgcgaggccttcaaggtctttgaccgcgacaacaacggcttcatctcggctgccgagctgcgtcacgtcatgacgtcg O_stenoceras_CMW2344_SA caccgactccgaggaggagatccgcgaggctttcaaggtctttgaccgcgacaacaacggcttcatctcggctgccgagctgcgtcacgtcatgacgtcg O_stenoceras_CMW3202_T caccgactccgaggaggagatccgcgaggctttcaaggtctttgaccgcgacaacaacggcttcatctcggctgccgagctgcgtcacgtcatgacgtcg Sporothrix_sp_1_CMW9488_MEXICO attggcgagaag Sporothrix_sp_1_CMW9491_MEXICO attggcgagaag Ophiostoma_cf_abietinum_CMW397_SA attggcgagaag O_cf_abietinum_CMW26262_CHINA attggcgagaag O_cf_abietinum_CMW26269_CHINA attggcgagaag O_cf_abietinum_CMW28030_RUSSIA attggcgagaag O_euskadiensis_CMW27318_SPAIN attggcgagaag O_euskadiensis_CMW27898_SPAIN attggcgagaag O_euskadiensis_CMW27899_SPAIN attggcgagaag O_fusiforme_CMW7131 attggcgagaag O_fusiforme_CMW9968_T attggcgagaag O_abietinum_CMW22310_T attggcgagaag O_lunatum_CMW10563_T attggcgagaag Sporothrix_sp_2_CMW9487_MEXICO attggcgggaag Sporothrix_sp_2_CMW9489_MEXICO attggcgggaag O_stenoceras_CMW2344_SA attggcgagaag O_stenoceras_CMW3202_T attggcgagaag ; END; BEGIN TREES; Title 'Trees from "caltree.tre"'; LINK Taxa = Taxa; TRANSLATE 1 Sporothrix_sp_1_CMW9488_MEXICO, 2 Sporothrix_sp_1_CMW9491_MEXICO, 3 Ophiostoma_cf_abietinum_CMW397_SA, 4 O_cf_abietinum_CMW26262_CHINA, 5 O_cf_abietinum_CMW26269_CHINA, 6 O_cf_abietinum_CMW28030_RUSSIA, 7 O_euskadiensis_CMW27318_SPAIN, 8 O_euskadiensis_CMW27898_SPAIN, 9 O_euskadiensis_CMW27899_SPAIN, 10 O_fusiforme_CMW7131, 11 O_fusiforme_CMW9968_T, 12 O_abietinum_CMW22310_T, 13 O_lunatum_CMW10563_T, 14 Sporothrix_sp_2_CMW9487_MEXICO, 15 Sporothrix_sp_2_CMW9489_MEXICO, 16 O_stenoceras_CMW2344_SA, 17 O_stenoceras_CMW3202_T; TREE PAUP_1 = ((16:0.0,17:0.0):36.5,(10:0.0,11:0.0,(13:1.0,(6:2.0,((3:0.0,(4:0.0,5:0.0):1.0):14.0,(12:0.0,((14:0.0,15:0.0):4.0,((1:0.0,2:0.0):1.0,(7:0.0,8:0.0,9:0.0):1.0):4.0):8.0):1.0):2.0):1.0):1.0):36.5):0.0; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 612; END; begin paup; exclude uninf; hsearch swap = tbr addseq = random nreps = 100; roottrees rootmethod = outgroup outroot = monophyl; showtrees; savetree file = filename.tre format = altnexus root = yes brlens = yes; pscores . / tl = yes ci = yes ri = yes; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 612; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 612; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1332939139546; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 170967056035637275; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 2098582590341199726; mqVersion 275; checksumv 0 3 1675146241 null getNumChars 612 numChars 612 getNumTaxa 17 numTaxa 17 short true bits 1152921504606846991 states 15 sumSquaresStatesOnly 176219.0 sumSquares -5.988274294927963E21 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 242; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1280 662; setLocation -4 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #170967056035637275 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 876.1332939086437.9139422056959886035; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1038 595; setLocation -4 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle on; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 6; orientUp; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #2098582590341199726 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; rowNamesWidth 212; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1038 595; setLocation -4 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end; factory; exclude uninf; begin paup; bootstrap nreps = 1000; savetree file = pnbootstrap.tre format = altnexus from = 1 to = 1 savebootp = both maxdecimals = 0; END;