#NEXUS
[written Sun Apr 22 16:49:43 COT 2012 by Mesquite  version 2.75 (build 564) at Phenix.local/192.168.0.10]

BEGIN TAXA;
	TITLE Taxa;
	DIMENSIONS NTAX=26;
	TAXLABELS
		Arabidopsis_thaliana_TPK4 Arabidopsis_thaliana_TPK5 Arabidopsis_thaliana_TPK3 Arabidopsis_thaliana_TPK2 Arabidopsis_thaliana_TPK1 Arabidopsis_thaliana_KCO3 Populus_trichocarpa__TPKc01 Populus_trichocarpa__TPKc02 Populus_trichocarpa__TPKc03 Populus_trichocarpa__TPKc04 Populus_trichocarpa__TPKc05 Populus_trichocarpa__TPKc06 Populus_trichocarpa__TPKc07 Populus_trichocarpa__TPKc08 Populus_trichocarpa__TPKc09 Populus_trichocarpa__TPKc10 Oryza_sativa_OsTPKa Oryza_sativa_TPKc01 Oryza_sativa_OsTPKb Physcomitrella_patens_TPKc01 Physcomitrella_patens_TPKc02 Physcomitrella_patens_TPKc03 Selaginella_moellendorffii_SmTPK1 Selaginella_moellendorffii_SmTPK3 Selaginella_moellendorffii_SmTPK4 Selaginella_moellendorffii_SmTPK2 
	;

END;


BEGIN CHARACTERS;
	TITLE  Character_Matrix;
	DIMENSIONS  NCHAR=250;
	FORMAT DATATYPE = Protein GAP = - MISSING = ?;
	MATRIX
	Arabidopsis_thaliana_TPK4          -SPEETQVT--TVSKSKWTILVLAMILLLVYLTFGVCTYSFFRDQFSGTE--TNLFVDAFYFSIVTFSTVGYGDIVPSTSTTKILTIVLVSTGVVFLDYLLNRVVSHVLSLQENAILDRINK--------TRNR-AIRDHI--AEDG-KIRLKWKLCLAFCAVGLCVGSGALFLHVFERLDWLDSVYLSVISVTTVGYGDKTFKTVEGRGFAVFWLLLSTIAMATLFLYLAEMRIDRTTVMKLPPSESEF
	Arabidopsis_thaliana_TPK5          RTKPPETKK--PS-PVSKSIIRQAIFLLIVYLTLGVSIYSFNRDHYSGIE--THPVVDALYFCIVTMCTIGYGDIAPLTPWTKIFAVVFVLFGFGFLDILLSGVVNYVLDLQESMILTGIQTRQHHQHHHHHRF-SAKDYIIDFEKG-RMRIRMKVCLALCVVVLCIGVGALVLHFVEELGFVDSVYLSVMSVTTVGYGDRAFKTLQGRLFAAVWLLVSTLAVARAFLYLAEARIDRRHRKAVKLALNRE
	Arabidopsis_thaliana_TPK3          -LHHPIRQK-DPT-ETSRSVVRQAFALLVVYLSLGVLIYWLNRDHYVVNQ--THPVVDGLYFCIVTMCTIGYGDITPNSVVTKLFSIMFVLVGFGFIDILLSGMVSYVLDLQESYMLDSAKR---R----DEPE-KRRSYIIDVKKG-RMRIRLKVALALGVVVLCIAVGVGIMHFIEEIGWLDSFYLSVMSVTTVGYGDRAFKTLPGRLFAAIWLLVSTLAVARAFLYLAEARVDKRNRERAKKVLCET
	Arabidopsis_thaliana_TPK2          --SHPNDPKTDQQ-SDSKTIVNQAVALLVVYLSLGVLIYWLNRDSYNVKQ--THPVVDALYFCIVTMCTIGYGDITPDSVVTKLFSIFFVLVGFGFMDILLSGMVTYVLDLQENYMLETARN---ESLNLNDRD-KVRSYIIDVKKG-RMRIRLKVGLALGVVVLCLGFGVLIMHFVEKIGWLDSFYFSVMSVTTVGYGDRAFNTLAGRLLAAMWLLVSTLAVARAILFLAESRVDKRNRERAKKVLGES
	Arabidopsis_thaliana_TPK1          -PPPHPSKI--PMFSDLNPNLRRVIMFLALYLTIGTLCFYLVRDQISGHK--TSGVVDALYFCIVTMTTVGYGDLVPNSSASRLLACAFVFSGMVLVGHLLSRAADYLVEKQEALLVRAFHL--------RQSF-GPTDILKELH---TNKLRYKCYATCLVLVVLFIVGTIFLVMVEKMPVISAFYCVCSTVTTLGYGDKSFNSEAGRLFAVFWILTSSICLAQFFLYVAELNTENKQRALVKWVLTRR
	Arabidopsis_thaliana_KCO3          TDMAPDQET--EQ-SVSKSIARQALALLVVYLSLGVLIYWLTLDSDNAYQ--THPVAVALYFFVVTFC-----------------------------------------------------------------------------------------------------GFLIVHFVVKIGWLDSFCFSVMMVTTVGFGDRAFNTWLGTFLAAVWLLVSTLAVARAFLFLADARADKRNRERAKKVLGES
	Populus_trichocarpa__TPKc01        DLNHPAITK--PK-FGSQSIVRQAFVLLVLYLSLGVLIYSLNRDKFKGNA--TNPVVDALYFCIVTMCTIGYGDITPDSTATKLFSILFVLIGFGFVDILLSGMVSYVLDLQESHLLRNVKR---G----VEKE-SAGSYIIDVKKG-RMRIRMKVGLALGVVVLCIGVGVAFMHFVERLGWLDSLYLSVMSVTTVGYGDRAFTSLAGRIFASIWLLVSTLAVARAFLYLAEARVDKRHRMLAKWVLGQH
	Populus_trichocarpa__TPKc02        -NGPIPRYE--SFFGGRHQSLKQVAVFLAVYLGLGTLCFYVVRGDIKGKK--SNPILDSLYFCIVTMTTVGYGDLVPDSAPVKLLACVFVFTGMLLIGLILSKAADYLVEKQEILLIKALRM--------HQKL-DPAAFLKEIE---TNKVKYKCYLAIIILSVLMLVGTIFLYMVEDLDIIDAFYCVCSTVTTLGYGDKSFSTVYGRMFAVFWILTGTIALGQLFLYIAELFTESRQRALVNWVLTRR
	Populus_trichocarpa__TPKc03        SFTDSFDPR--QAPKSTPLIVRQAFIAVFLYILVVVLIF-LVGGRFKGTE--TIKPVDALYFTVVTLCTIGYGDIVPDTIFTKLFTCVFVLVGFGFIDILLNGLVTYICDRQEAVLLSTMDE--------SKSITMVQAYMIDKAKG-RMRIRMKVGMASAVVIVCIAVGTISARYLEKLDWVDSFYLSVTSVTTVGYGDFAFSTITGRCFAIIWLSVSTLAVARAFLYLTELRIDKRNRRIAKWILHKK
	Populus_trichocarpa__TPKc04        QPTKPQIPK--PQ-SESNSIIRQAIFLLSLYLLLGVVIYSFNTDHFSGTE--THPVVDALYFCIVTMCTIGYGDIAPLTPVTKVFACVFVLVGFGFIDILLSGLVNYVLDLQESMILTGIEM---SKNRNREGF-SAADYIIDVKKG-RMRIRLKVGLALGVVILCIGIGTLVLYFLEDLDWIDSVYLAVMSVTTVGYGDRAFKSLPGRLFAAIWLLVSTLAVARAFLYLAEARIDKRHRRISNWVLHRD
	Populus_trichocarpa__TPKc05        TFADSFDPR--PGSKSTPLIVRQAFVGVFLYVLVVVLIF-LVSGRFRGTA--TFKPVDALYFTVVTLCTIGYGDIVPDTTFTKLFTCGFILVGFGFIDILLNGLVTYICDKQEAVLLSTMDG--------STPTTMVQAYMIDKAKG-RMRIRTKVVLASAVVIVCIAVGTITVHYLEKLDWVDSFYLAVTSVTTVGYGDYAFTTITGRCFAIIWLLVSTLAVARAFLYLAELRIDKRNRRIAKWVLQKK
	Populus_trichocarpa__TPKc06        -NGPIPCCG--SFWGGLHQSLKKVALLLAVYLGLGTICFYAVRDDIKGKK--TNPILDSVYFCIVTMTTVGYGDLVPNSALVKLLACVFVFVGMALVGLILSKAADYLVDKQEILLIKALHK--------HEKP-GPAASLKEIE---TSKVKYKCYLALAILSVLMLVGTVFLYMVEDLNIIDAFYCVCCTITTLGYGDKSFSTGGGRLFALFWMLTGTIGLGLLFLYIAELFTESRQRTLVHWVLTRK
	Populus_trichocarpa__TPKc07        -KWPIPSYE--FLFGGLHQSLKTLAMILAVYVSAGTMCFYAVRDDIKGKT--SNPILDSLYFCIVTMTTVGYGDLVPNSASVKLAVCVFVFIGMALVGLILSKAGDYLVEKQEILLVEALHM--------HQKL-GPAAFLKETD---IYKVKYKCYLAVAILSGLMMIGSVFLYMIEDLDVVDSFYCVCSTISTLGYGDKSFSTGYGRMFAVVWIMTGTVGLGQLYMYIVELFTESRQRKLVNWVLTKM
	Populus_trichocarpa__TPKc08        DFNQPVIAK--PR-FGSQSIIGQAFLLLVLYLSLGVLIYSLNRDKFEGIE--THPVADALYFCIVTMCTIGYGDITPNSTATKLFSILFVLVGFGFIDIFLSGMVSYVLDLQESHLLRNVKR---G----VEKE-SAGSYIIDVKKG-RMRIRMKVGLALGVVVLCIGVGVGFMHFVERLGWLDSLYLSVMSVTTVGYGDRAFTSLAGRIFASIWLLVSTLAVARAFLYLAEARVDKRHRRMAKWVLGQH
	Populus_trichocarpa__TPKc09        QPTKPQIPK--PQ-PDSTSIIRQATFLLSMYLLLGVIIYSFNTDHFSGIE--THPVVDALYFCIVTMCTIGYGDITPLTPVTKVFACVFVLVGFGFIDILLSGLVNYVLDLQESMILTGIEM---GKNRNHEGF-SATDYIFDVKKG-RMRIRLKVGLALGVVVLCIGIGTLVLYFLEDLDWIDSVYLAVMSVTTVGYGDRAFKTLPGRLFAAIWLLVSTLAVARAFLYLAEARIDKRHRRITNWVLHRD
	Populus_trichocarpa__TPKc10        -QRRRFRQP--MNVNNQDCSFKKVFLVLAIYLGVGTLCLSLVMNQIEGKK--TNGIVDAVYFSVVTMTTVGYGDLVPHTTLAKLLSCVYVFAGMALGGIILSKAADYIVEKQEILLVRAMHM--------NEKT-GLSEILEEVE---THKVKYKFLLALILLFLLMIVGTIFLYLVESFEFVDAFYCVCSSITTLGYGDDSFSTRAGRVFAVFWILCSTICLAQFFLYLAELYTEKRQRLLVKRVLARN
	Oryza_sativa_OsTPKa                -KGSSVKAK--ELFKEMRPSFRLVGLLLFIYLLVGVLAFYAVMDEISGKR--TNRVLDALYFCVVTMTTVGYGDLVPNNDTTKLLACAFVFMGMAVVALFVSKVADYLVEKQEVLFFKALHT--------NLKG-GETKMLRAIE---TNRIKYKFYTNALLLVLSIISGTVFLWKVEKLSLVDSFYCVCATITTLGYGDKSFSSKLGRVFAVFWIITSTIIMAQFFMYLAEIYTERRQKMLANWVLTRK
	Oryza_sativa_TPKc01                ---GDSRNP--PPPPRRPAIVLHAFLFLLAYLAMGVTFYAALPGNFTSSAGPTHPVADALYFCIVTLCTIGYGDITPATPAAKLFSISFVLIGFGFVDILLSGMVSYVLDLQEHLLITALKNPR------SVRK-HRHNYIFDLKKG-RMRVRMKVALALTVVAICVGVGAAVLKRVENLGWLDAVYLAVMSVTTVGYGDHAFRTLAGRLFASAWLLVSTLAVARAFLYLAEMRIDKRHRAMANWVLSRD
	Oryza_sativa_OsTPKb                -AADAPPKT--LFTGGGRPSFRLVGLLLVAYLLLGTIAFYLAMDHMSGTR--TTRALDALYFCVVTMTTVGYGDLVPASDAAKLLACAFVFAGVAVVGTFLSKAADYLVEKQEALLFRALHS--------H-------TMVRAME---MNKVRYKLYTAGLLLVAAVASGTVVLWKVEGMRAVDAFYCVCATVTTLGYGDRSFSSEGGRAFAVAWITVSTVVVALFFLYAAELYTERRQRELARWVLRRR
	Physcomitrella_patens_TPKc01       -RKAAALKR--PEFTKGSAIVKQAGIGLIIYLALGVTIYAWKNDEFSGIE--SFSVVDALYFCVVTMCTIGYGDIVPVTPFAKLFSCVFVLIGFGFIDTLLSGMVTYVLDKQEHLLLSAVEG--------SHYR-TAKKYFLNEKHGNRMRIRLKVAIALGVPLLCIVIGTVMMMQFEELGLLDAFYCTIMSVTTVGYGDHTFKTYYGRLFAGVWLLFSTLAVARCFLYLAEARIDKRHRAIAKWVLQRE
	Physcomitrella_patens_TPKc02       SLPPPPQFQ--QE-QEGMSVIFKAIIGLVIYLLVGLLCFSLFDIQLEGSS--TSSHVDALYFAIVTMTTVGYGDLVPKTIGAKLFTCAFVFAGFGLVGALVSGAANYLVEKQERVLVQKIYF--------KYMK-KEQRELIVVDDG-VVAAHWKMLIAGVAVFVHLIAGMFALMYWEGMNFIDAFYLVCVTVTTLGYGDQSFRSQAGRIFAVFWILSSTVCLAQFFLYLAESRTEERQHEIACWALHRP
	Physcomitrella_patens_TPKc03       -KGGPMLKR--PQFEKGSAIVTHAGIGLMIYLAVGVAIYAWKNGEFSGIE--TSSVVDALYFCVVTMCTIGYGDIVPVTAFAKLFCCLFVLIGFGFIDALVSGMVTYVLDKQEHLLLSAVEG--------SHYR-TAKKYFLNAKHGNRMRIRMKVGLALGVPVLCIIIGTVMMVKFEGLALVDAFYCTIMSITTVGYGDHTFKTFYGRLFAGLWLLFSTLAVARCFLYLAEARVDKRHRLIAKWVLQRE
	Selaginella_moellendorffii_SmTPK1  NISPAPAFG---MTTKSYSPGKTAALILALYLAIGILCFVHVRDELHGTK--TLSFVDALYFCVVTMTTVGYGDLVPATATAKLMTCLFVFVGFAIFGLLLGNAANYLVEKQERLLERAIEK--------REKYLHHKNTESDAR---IRRVHCKVAVAAGLVLVLFGAGISVLVKLEGMSFLDAFYCVTVTVTTLGYGDRSFTSAGGRIFAVVWILMSTVCVAQFVLYIAELVTEGRQHSLTKWILSRK
	Selaginella_moellendorffii_SmTPK3  -DKSKKLTR--PKLESATTVVVQASIGLMIYLAIGVAIYVWRTDDFSGSS--TYPVIDALYFCIVTMCTIGYGDITPTSPSAKLFACFFVLVGFGFIDILLSGMVAYVLERQEHLLLSAVEG--------SHHE-TAKNYVVNTEKG-RMRIRMKVGLALGVVFFCLAIGTLFMHWMEELGWLDSFYLSTMSVTTVGYGDHTFKTFKGRLFAAGWLLVSTLAVARSFLFLAEARIDKRNRLIAKWVLHRE
	Selaginella_moellendorffii_SmTPK4  -KPPQPELP--PVANLAILTPQRAAMILLIYIAVGLLCFIYVKHGFEGER--TVNIVDALYFCAVTMTTVGYGDLVPHTSTAKLFTCAFVFLGFGLIGLIIGNAANYFVEKQQRLLEKALEE--------QQQL----EQSGEAR---ITSVQHKVLVAAGLVVIVLGAGIGILMGVEGLGFVDSFYCVCVTVTTLGYGDRAFRTEGGRICAVFWILASTACVAQFMLYLAELITEERQHAIAKWVLSRK
	Selaginella_moellendorffii_SmTPK2  -KRCGDDDK--PRLESAARIARQAAVGFCIYIAIGVLIYVWRRDEFSGTR--THTLVDALYFSIVTMCTIGYGDIAPVSSTTKLYCCVFVVIGMGFIDVLLSGMVAYILERQEELLMGAVEG--------GRHQ-TARCFFPLFFQG-RMRKRMKVVLALAVVIGCVTLGTLAVHKLEKLSWMDSFYLSCISVTTVGYGDHAFESLAGRLFASMWLLISSLAVARAFLFLAEARIARRNRLIAKWVLTRE

;


END;

BEGIN ASSUMPTIONS;
	TYPESET * UNTITLED   =  unord:  1 -  250;

END;

BEGIN TREES;
	Title Imported_trees;
	LINK Taxa = Taxa;
	TRANSLATE
		1 Arabidopsis_thaliana_TPK4,
		2 Arabidopsis_thaliana_TPK5,
		3 Arabidopsis_thaliana_TPK3,
		4 Arabidopsis_thaliana_TPK2,
		5 Arabidopsis_thaliana_TPK1,
		6 Arabidopsis_thaliana_KCO3,
		7 Populus_trichocarpa__TPKc01,
		8 Populus_trichocarpa__TPKc02,
		9 Populus_trichocarpa__TPKc03,
		10 Populus_trichocarpa__TPKc04,
		11 Populus_trichocarpa__TPKc05,
		12 Populus_trichocarpa__TPKc06,
		13 Populus_trichocarpa__TPKc07,
		14 Populus_trichocarpa__TPKc08,
		15 Populus_trichocarpa__TPKc09,
		16 Populus_trichocarpa__TPKc10,
		17 Oryza_sativa_OsTPKa,
		18 Oryza_sativa_TPKc01,
		19 Oryza_sativa_OsTPKb,
		20 Physcomitrella_patens_TPKc01,
		21 Physcomitrella_patens_TPKc02,
		22 Physcomitrella_patens_TPKc03,
		23 Selaginella_moellendorffii_SmTPK1,
		24 Selaginella_moellendorffii_SmTPK3,
		25 Selaginella_moellendorffii_SmTPK4,
		26 Selaginella_moellendorffii_SmTPK2;
	TREE Two_pore_channels_tree = (1:1.4066197076480937,((((11:0.08108143652952465,9:0.09245892400161827)100:0.72071624463899,((26:0.595176611309128,24:0.15677031744779585)61:0.09315677629598414,((20:0.0745907645066643,22:0.13438329321053125)89:0.1388457241625526,(21:0.7757046491640667,((23:0.4847049341150233,25:0.40040925830478824)88:0.2040263006405876,((5:0.38056830091797317,(16:0.5228579317286705,(12:0.13448363832912102,(13:0.2581309372361498,8:0.09417379807776453)59:0.020214541762786413)100:0.289546577700896)39:0.09642386608253116)38:0.07551882027330091,(19:0.40839526637560764,17:0.3242903342024206)99:0.3047143110517344)100:0.6733697870029139)53:0.16327408447759145)100:1.4064818237906322)60:0.17198919340196248)51:0.15831868393511062)68:0.13683065744397552,(18:0.5898293228089232,(((6:0.37876710502459066,4:0.0694858497601174)100:0.154987355661551,3:0.10610632653944449)100:0.17646115998924342,(7:0.04021733697328078,14:0.06102492561148647)99:0.13007251428757563)93:0.15886687730853774)33:0.06846769264464668)78:0.1726994891930278,(10:0.04996681183670348,15:0.022110319978677143)97:0.15920149901768935)86:0.22626305681088418,2:0.02365111799251617);

END;


BEGIN CODONS;
	CODESET * UNTITLED   =  universal:  1 -  250;


END;

BEGIN MESQUITECHARMODELS;
	ProbModelSet * UNTITLED   =  'Mk1 (est.)':  1 -  250;
END;

Begin MESQUITE;
		MESQUITESCRIPTVERSION 2;
		TITLE AUTO;
		tell ProjectCoordinator;
		timeSaved 1335131383877;
		getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa;
		tell It;
			setID 0 5009916390509922639;
		endTell;
		getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters;
		tell It;
			setID 0 6443490988337283290;
			mqVersion 275;
			checksumv 0 3 3457921188 null  getNumChars 250 numChars 250 getNumTaxa 26 numTaxa 26   short false   bits 1048575   states 1048575   sumSquaresStatesOnly 8.9568794502773E13 sumSquares 8.9568794502773E13 longCompressibleToShort false usingShortMatrix false   NumFiles 1 NumMatrices 1;
			mqVersion;
		endTell;
		getWindow;
		tell It;
			suppress;
			setResourcesState true false 100;
			setPopoutState 400;
			setExplanationSize 0;
			setAnnotationSize 0;
			setFontIncAnnot 0;
			setFontIncExp 0;
			setSize 1280 666;
			setLocation 0 22;
			setFont SanSerif;
			setFontSize 10;
			getToolPalette;
			tell It;
			endTell;
			setActive;
			desuppress;
		endTell;
		endTell;
end;