#NEXUS [written Sat Apr 28 19:30:55 UYT 2012 by Mesquite version 2.75 (build 564) at usuario-HP/192.168.1.7] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=16; TAXLABELS 'Teratosphaeria nubilosa CMW 3282 ex-epitype Victoria(Group C)' 'Teratosphaeria nubilosa CMW 26014 South Africa(Group C)' 'Teratosphaeria nubilosa CMW 26218 Uruguay(Group C)' 'Teratosphaeria nubilosa CMW 30900 Brazil(Group C)' 'Teratosphaeria nubilosa CMW 30714 NSW(Group C)' 'Teratosphaeria nubilosa CMW 30752 Victoria(Group C)' 'Teratosphaeria nubilosa CMW 30751 Victoria(Group C)' 'Teratosphaeria nubilosa CMW 30715 NSW(Group C)' 'Teratosphaeria nubilosa CMW 30707 NSW(Group A)' 'Teratosphaeria nubilosa CMW 30709 NSW(Group A)' 'Teratosphaeria nubilosa CMW 30717 NSW(Group A)' 'Teratosphaeria nubilosa CMW 30735 Tasmania(Group B)' 'Teratosphaeria nubilosa CMW 30723 WA(Group B)' 'Teratosphaeria nubilosa CMW 30745 Victoria(Group B)' 'Teratosphaeria nubilosa CMW 30750 Vicoria(Group B)' 'Teratosphaeria nubilosa CMW 31008 New Zealand(Group B)' ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=144; FORMAT DATATYPE = DNA INTERLEAVE GAP = - MISSING = ?; MATRIX 'Teratosphaeria nubilosa CMW 3282 ex-epitype Victoria(Group C)' CAAGCAACCTCATCCTCATATCGACCTCCGCCTCTCTTCGCGATCCCCAATTCGTCCTCCCAATACCTCCCCGGCCTCCTCTAGTGGTGAGTACCCCACTTTCACCAGCTTCACCCACAGAAAGTATGTCTGCTAAATGAACGC 'Teratosphaeria nubilosa CMW 26014 South Africa(Group C)' CAAGCAACCTCATCCTCATATCGACCTCCGCCTCTCTTCGCGATCCCCAATTCGTCCTCCCAATACCTCCCCGGCCTCCTCTAGTGGTGAGTACCCCACTTTCACCAGCTTCACCCACAGAAAGTATGTCTGCTAAATGAACGC 'Teratosphaeria nubilosa CMW 26218 Uruguay(Group C)' CAAGCAACCTCATCCTCATATCGACCTCCGCCTCTCTTCGCGATCCCCAATTCGTCCTCCCAATACCTCCCCGGCCTCCTCTAGTGGTGAGTACCCCACTTTCACCAGCTTCACCCACAGAAAGTATGTCTGCTAAATGAACGC 'Teratosphaeria nubilosa CMW 30900 Brazil(Group C)' CAAGCAACCTCATCCTCATATCGACCTCCGCCTCTCTTCGCGATCCCCAATTCGTCCTCCCAATACCTCCCCGGCCTCCTCTAGTGGTGAGTACCCCACTTTCACCAGCTTCACCCACAGAAAGTATGTCTGCTAAATGAACGC 'Teratosphaeria nubilosa CMW 30714 NSW(Group C)' CAAGCAACCTCATCCTCATATCGACCTCCGCCTCTCTTCGCGATCCCCAATTCGTCCTCCCAATACCTCCCCGGCCTCCTCTAGTGGTGAGTACCCCACTTTCACCAGCTTCACCCACAGAAAGTATGTCTGCTAAATGAACGC 'Teratosphaeria nubilosa CMW 30752 Victoria(Group C)' CAAGCAACCTCATCCTCATATCGACCTCCGCCTCTCTTCGCGATCCCCAATTCGTCCTCCCAATACCTCCCCGGCCTCCTCTAGTGGTGAGTACCCCACTTTCACCAGCTTCACCCACAGAAAGTATGTCTGCTAAATGAACGC 'Teratosphaeria nubilosa CMW 30751 Victoria(Group C)' CAAGCAACCTCATCCTCATATCGACCTCCGCCTCTCTTCGCGATCCCCAATTCGTCCTCCCAATACCTCCCCGGCCTCCTCTAGTGGTGAGTACCCCACTTTCACCAGCTTCACCCACAGAAAGTATGTCTGCTAAATGAACGC 'Teratosphaeria nubilosa CMW 30715 NSW(Group C)' CAAGCAACCTCATCCTCATATCGACCTCCGCCTCTCTTCGCGATCCCCAATTCGTCCTCCCAATACCTCCCCGGCCTCCTCTAGTGGTGAGTACCCCACTTTCACCAGCTTCACCCACAGAAAGTATGTCTGCTAAATGAACGC 'Teratosphaeria nubilosa CMW 30707 NSW(Group A)' CAAGCAACCTCATCCTCATATCGACCTCCGCCTCTCTTCGCGATCCCCAATTCGTCCTCCCAATACCTCCCCGGCCTCCTCTAGTGGTGAGTACCCCACTTTCACCAGCTTCACCCACAGAAAGTATGTCTGCTAAATGAACGC 'Teratosphaeria nubilosa CMW 30709 NSW(Group A)' CAAGCAACCTCATCCTCATATCGACCTCCGCCTCTCTTCGCGATCCCCAATTCGTCCTCCCAATACCTCCCCGGCCTCCTCTAGTGGTGAGTACCCCACTTTCACCAGCTTCACCCACAGAAAGTATGTCTGCTAAATGAACGC 'Teratosphaeria nubilosa CMW 30717 NSW(Group A)' CAAGCAACCTCATCCTCATATCGACCTCCGCCTCTCTTCGCGATCCCCAATTCGTCCTCCCAATACCTCCCCGGCCTCCTCTAGTGGTGAGTACCCCACTTTCACCAGCTTCACCCACAGAAAGTATGTCTGCTAAATGAACGC 'Teratosphaeria nubilosa CMW 30735 Tasmania(Group B)' CAAGCAACCTCATCCTCACATCGACCTCCGCCTCTCTTCGCGATCCCCAATTCGTCCTCCCAATACCTCCCCGGCCTCCTCTCGTGGTGAGTACCCCACTTTCACCAGCTTCACCCACAGAAAGTATGTCTGCTAAATGAACGC 'Teratosphaeria nubilosa CMW 30723 WA(Group B)' CAAGCAACCTCATCCTCACATCGACCTCCGCCTCTCTTCGCGATCCCCAATTCGTCCTCCCAATACCTCCCCGGCCTCCTCTCGTGGTGAGTACCCCACTTTCACCAGCTTCACCCACAGAAAGTATGTCTGCTAAATGAACGC 'Teratosphaeria nubilosa CMW 30745 Victoria(Group B)' CAAGCAACCTCATCCTCACATCGACCTCCGCCTCTCTTCGCGATCCCCAATTCGTCCTCCCAATACCTCCCCGGCCTCCTCTCGTGGTGAGTACCCCACTTTCACCAGCTTCACCCACAGAAAGTATGTCTGCTAAATGAACGC 'Teratosphaeria nubilosa CMW 30750 Vicoria(Group B)' CAAGCAACCTCATCCTCACATCGACCTCCGCCTCTCTTCGCGATCCCCAATTCGTCCTCCCAATACCTCCCCGGCCTCCTCTCGTGGTGAGTACCCCACTTTCACCAGCTTCACCCACAGAAAGTATGTCTGCTAAATGAACGC 'Teratosphaeria nubilosa CMW 31008 New Zealand(Group B)' CAAGCAACCTCATCCTCACATCGACCTCCGCCTCTCTTCGCGATCCCCAATTCGTCCTCCCAATACCTCCCCGGCCTCCTCTCGTGGTGAGTACCCCACTTTCACCAGCTTCACCCACAGAAAGTATGTCTGCTAAATGAACGC ; END; BEGIN TREES; Title 'Trees from "tn2mes.txt"'; LINK Taxa = Taxa; TRANSLATE 1 'Teratosphaeria nubilosa CMW 3282 ex-epitype Victoria(Group C)', 2 'Teratosphaeria nubilosa CMW 26014 South Africa(Group C)', 3 'Teratosphaeria nubilosa CMW 26218 Uruguay(Group C)', 4 'Teratosphaeria nubilosa CMW 30900 Brazil(Group C)', 5 'Teratosphaeria nubilosa CMW 30714 NSW(Group C)', 6 'Teratosphaeria nubilosa CMW 30752 Victoria(Group C)', 7 'Teratosphaeria nubilosa CMW 30751 Victoria(Group C)', 8 'Teratosphaeria nubilosa CMW 30715 NSW(Group C)', 9 'Teratosphaeria nubilosa CMW 30707 NSW(Group A)', 10 'Teratosphaeria nubilosa CMW 30709 NSW(Group A)', 11 'Teratosphaeria nubilosa CMW 30717 NSW(Group A)', 12 'Teratosphaeria nubilosa CMW 30735 Tasmania(Group B)', 13 'Teratosphaeria nubilosa CMW 30723 WA(Group B)', 14 'Teratosphaeria nubilosa CMW 30745 Victoria(Group B)', 15 'Teratosphaeria nubilosa CMW 30750 Vicoria(Group B)', 16 'Teratosphaeria nubilosa CMW 31008 New Zealand(Group B)'; TREE PAUP_1 = (1:100.0,2:100.0,3:100.0,4:100.0,5:100.0,6:100.0,7:100.0,8:100.0,9:100.0,10:100.0,11:100.0,(12:100.0,13:100.0,14:100.0,15:100.0,16:100.0)86:86.0)0; END; Begin paup; set criterion = parsimony; hsearch swap = tbr; bootstrap nreps = 1000; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 144; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 144; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 144; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1335652255587; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 1155748626956366115; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 8669477913440569472; mqVersion 275; checksumv 0 3 426081879 null getNumChars 144 numChars 144 getNumTaxa 16 numTaxa 16 short true bits 15 states 15 sumSquaresStatesOnly 43875.0 sumSquares 43875.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 700 464; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #1155748626956366115 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #1155748626956366115; getWindow; tell It; newAssistant #mesquite.lists.DefaultTaxaOrder.DefaultTaxaOrder; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 600 397; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; endTell; end;