#NEXUS [MacClade 4.06 registered to erika edwards, yale university] BEGIN DATA; DIMENSIONS NTAX=84 NCHAR=291; FORMAT DATATYPE=DNA MISSING=? GAP=- ; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Populus_trichocarpa_eugene3.00020323 ------------------------------------------------------------------------------------------------------------------TGGTAGAATGTGGCTAGAGTTATT---GGTGGAAAAACAGCTGAGGAAGTTAAGAGGCATTATGAGCTTTTGGTGGAAGATGTTAAGCATATCGAAAATGGACACGTACCCCAACTAC----------------------------------------------------------- [115] Populus_trichocarpa_gw1.V.1367.1 ------------------------------------------------------------------------------------------------------------------TGGTACAATGTGGCTAGAGCTGTT---GGTGGCAAAACAGCTGAGGAAGTTAAGAGGCATTATGAGCTTCTGGTGGAGGATGTTAAGCATATCGAAAATGGACGTGTACCCTACCCTAACTACAGG--------------------------------------------------- [123] Arabidopsis_thaliana_AtRL6 ------------------------------------------------------------------------------------GCGGTTTATGACAAAGATACCCCTGACAGGTGGTACAATGTGGCTAGAGCTGTA---GGTGGAAAAACAGCTGAGGAAGTTAAGAGGCATTATGAGCTTCTGGTGGAAGATGTTAAACATATCGAAAATGGACGCGTACCGTACCCTAACTACAGA--------------------------------------------------- [153] Arabidopsis_thaliana_AtRL5 ------------------------------------------------------------------------------------------------------------------TGGTACAATGTGGCCAGAGCTGTT---GGCGGCAAAACAGCAGACGAAGTTAAGAGGCATTATGAGCTTCTTGTGGAGGATGTTAAGCATATCGAAAATGGACGCGTACCATACCCTAACTACAGG--------------------------------------------------- [123] Antirrhinum_majus_RL2 ------------------------------------------------------------------------------------------------------------------TGGTACAATGTGGCCAGGGCCGTT---GGTGGCAAAACAGCTGAGGAAGTGAAGAGGCATTACGAAATCCTTGTGCAGGATGTCAAGCATATCGAGAATGGCCGTGTGCCGTTCCCCAACTACAGG--------------------------------------------------- [123] Antirrhinum_majus_RL4 ------------------------------------------------------------------------------------------------------------------TGGTACAATGTGGCCAGGGCCGTT---GGTGGCAAAACCGCTGAGGAAGTGAAGAGGCATTACGAAATCCTTGTGCAGGATGTCAAGCATATCGAGAATGGA--------------------------------------------------------------------------- [99] Antirrhinum_majus_RL3 ------------------------------------------------------------------------------------------------------------------TGGTACAATGTGGCCAGGGCCATT---GGTGGCAAAACCGCTGAGGAAGTGAAGAGGCATTATGAAATCCTTGCGGAGGATGTCAAGCATATCGAGAATGGCCGTGTGCCGTACCCCAACTACAGG--------------------------------------------------- [123] Symphoricarpos_orbiculatus_3 ------------------------------------------------------------------------------------------------------------------TGGTACAATGTGGCCAGAGCTGTT---GGCGGCAAAACAGCTGAGGAGGTTAAGAGGCATTATGAGCTTCTTGTGGAGGATGTTAAGCATATCGAAAATGGACGCGTACCATGCCCAAACTACAGG--------------------------------------------------- [123] Lonicera_x_bella_3 ------------------------------------------------------------------------------------------------------------------TGGCAAAATATTGCGAGGGCAGTA---GGGGGGAAATCTGTAGAGGAAGTGAAAAGGCACTATGAAATCCTCGTAGCAGACCTTAGGCACATTGAGTCCGGCAATGTCCCGTACCCAAACTACAGA--------------------------------------------------- [123] Acanthocalyx_alba_3 ------------------------------------------------------------------------------------------------------------------TGGCAGAATATCGCGAGGGCTGTG---GGTGGAAAATCGGCAGAAGAAGTGAAAAGGCATTACGAGATTTTAATTGCGGATCTCAAGCGTATTGAGTCCGGCGGTGTGCCTTTCCCCAACTAT------------------------------------------------------ [120] Cryptothladia_chinensis_3 ------------------------------------------------------------------------------------------------------------------TGGTACAATGTGGCTAGAGCTGTT---GGAGGCAAAACAGCGGAGGAAGTTAAGAGGCACTATGAGCTTCTGGTGGAGGATGTTAAGCATATCGAACATGGACGCGTACCGTACCCTAACTACAGG--------------------------------------------------- [123] Morina_longifolia_3 ------------------------------------------------------------------------------------------------------------------TGGTACAATGTGGCTAGAGCTGTT---GGAGGCAAAACAGCGGAGGAAGTTAAGAGGCNNTATGAGCTTCTGGTGGAGGATGTTAAGCATATCGAACATGGACGCGTACCGTACCCTAACTACAGG--------------------------------------------------- [123] Vitis_vinifera_GSVIVT01031982001 ------------------------------------------------------------------------------------------------------------------TGGTACAATGTCGCCAAGGCGGTT---GGCGGAAAAACTGCTGAGGAAGTGAAGAGGCATTATGAGGTCCTTGTGGAGGATGTGAAACATATCGAGAATGGACGTGTCCCCTTCCCCAACTACAGG--------------------------------------------------- [123] Arabidopsis_thaliana_AtRL2 ------------------------------------------------------------------------------------GCGGTATTTGATAAGGACACTCCCGACCGTTGGCAGAATATTGCCAAGGCAGTG---GGAGGAAAATCTGCTGAGGAAGTGAAAAGGCATTATGAAATCCTCATAGAAGACCTTAGGCACATA------------------------------------------------------------------------------------ [120] Arabidopsis_thaliana_AtRL1 ------------------------------------------------------------------------------------GCGGTGTATGACAAGGATACCCCTGACCGGTGGTACAATGTAGCCAGGGCCGTT---GGTGGCAAAACGGCTGAGGAGGTGAAGAGGCATTACGAAATCCTTGTGGAGGATGTCAAGCATATC------------------------------------------------------------------------------------ [120] Vitis_vinifera_GSVIVT01031975001 ----------------------------------------------------------------------------------------------------------------------ACAATGTTGCCAAGGCCGTT---GGKGGMAAAACTGCCGAGGAAGTGAAGAGGCATTACKAG--------------------------------------------------------------------------------------------------------------- [59] Populus_trichocarpa_fgenesh4_pm.C_LG_IV000458 ----------------------------------------------------------------------------------------------------------------------AGAATATTGCAAGGGTGGTG---GGTGGAAAATCTGCAGAGGAAGTGAAGAGGCACTACGAAGTCCTCGTAGAGGACCTTAGGCAC--------------------------------------------------------------------------------------- [83] Bournea_leiophylla_RAD ------------------------------------------------------------------------------------------------------------------TGGCAGAATATTGCGAGGGCAGTG---GGTGGGAAATCTGCGGAGGAAGTGAAAAGGCATTATGAAATCCTCATAGAAGACCTTAGGCACATTGAGTCTGGCAATGTCCCGTACCCCAACTACAGA--------------------------------------------------- [123] Veronica_montana_RAD ------------------------------------------------------------------------------------------------------------------TGGTACAATGTGGCCAAGGCTGTC---GAAGGCAAAACTGCCGAGGAAGTGGAGAGGCATTATGAACTCCTTGTGAAGGATGTGAAGCATATCGAGAACGGACATGTTCCCTACCCCAACTACAAA--------------------------------------------------- [123] Antirrhinum_majus_RADIALIS ------------------------------------------------------------------------------------------------------------------TGGTACAATGTGGCCAAGGCTGTT---GAAGGCAAAACTGCCGAGGAAGTGGAGAGGCATTATCAACTCCTTGTGAAAGACGTCAAGCATATCGAGAACGGACATGTTCCCTACCCCAACTACAAA--------------------------------------------------- [123] Gratiola_officinalis_RAD --------------------------------------------------------------------------------------------------------------------------TGTGGCCAAGGCTGTT---GAAGGCAAAACTGCCGAGGAAGTGGAGAGGCATTATCAACTCCTTGTGAAGGACGTCAAGCATATCGAGAACGGACATGTTCCCTACC-------------------------------------------------------------- [104] Diervilla_sessilifolia_2B ------------------------------------------------------------------------------------GCGGTATATGATAAGGACACTCCCGACCGTTGGCAGAATATTGCCAGGGCAGTG---GGTGGAAAATCTGCTGAGGAAGTGAAAAGGCATTATGAAATCCTCATAGAAGACCTTAGGCACATC------------------------------------------------------------------------------------ [120] Weigela_hortensis_2B ------------------------------------------------------------------------------------GCGGTGTTTGACAAAGATACCCCTGACCGTTGGTACAATGTAGCTAAGGCCGTT---GGTGGAACAACGGCTCAGGAAGTTAAGTGGCGTTACCAACTACTTGAGGAAGATGTTAAGCGAATT------------------------------------------------------------------------------------ [120] Sixalix_atropurpurea_2Bb ------------------------------------------------------------------------------------GCCGTGTATGATAAAGATACACCCGACCGTTGGCAGAACATTGCACGCGCAGTA---GGTGGAAAATCAGCAGAAGAAGTGAAAAGACATTACGAAATCCTCATTCAAGATCTTAGGCATATC------------------------------------------------------------------------------------ [120] Dipsacus_pilosus_2Bc ------------------------------------------------------------------------------------GCGGTGTATGACAAAGATACCCCTGACAGGTGGTATAATGTAGCCAAGGCCGTT---AGTGGAAAAACAGCCGAGGAAGTTAAGAGGCATTATGAACTCCTTGTGGAGGATGTCAAGCATATC------------------------------------------------------------------------------------ [120] Dipsacus_pilosus_2Ba ----------------------------------------------------------------------------------TAGCGCTATTTGATAAGGACACTCCCGACCGTTGGCATAACGTGGCGAAGGCCGTT---GGTGGAAAATCAGAGGAGGAAGTAAAAAGGCATTACGAGATTCTTGTGAAGGATATTATGCGAATTGAATCCGGC--------------------------------------------------------------------------- [131] Sixalix_atropurpurea_2Ba ----------------------------------------------------------------------------------TAGCGCTATTTGATAAGGACACTCCCGACCGTTGGCATAACGTGGCGAAGGCCGTG---GGTGGAAAATCAGAGGAGGAAGTAAAGAGGCATTACGAGATCCTTGTGAAGGATATTATGCGAATAGAATCCGGC--------------------------------------------------------------------------- [131] Dipsacus_pilosus_2Bb ---------------------------------------------------------------------------------------------------------------------------------------------GGTGGAAAAACRGYYGAGGAAGTTAAGAGGCATTATCAACTCCTTGTTGAGGATGTCAATCATATCGAGAATGGC--------------------------------------------------------------------------- [75] Fedia_cornucopiae_2Bc ------------------------------------------------------------AACAAGGCGTTTGAGAGAGCGCTGGCAGTGTATGACAAAGATACACCTGACAGGTGGTACAATGTAGCCAAGGCTGTT---GGAGGAAAAACGCCTGAGGAAGTTAAGCGGCATTACGAACTACTTGTAGAGGATGTTAAGCATATCGAGAATGGC--------------------------------------------------------------------------- [153] Fedia_cornucopiae_2Ba ---------------------------------------------------------------------------------------------------------------------------------------------GGGGGAAAAACGCCTCAGGAAGTTAAGTGGCATTATCAACTACTTGTCGCAGATGTCAAGCGTATCGAGAATGGC--------------------------------------------------------------------------- [75] Fedia_cornucopiae_2Bb ----------------------------------------------------------------------------------TAGCGCTATTTGATAAGGACACTCCCGACCGTTGGTACAATGTGGCCAGGGCCGTT---GGTGGCAAAACCGCTGAGGAAGTGAAGACGCATTACGAAATCCTTGTGCAGGATGTCAAGCATATCGAGAATGGM--------------------------------------------------------------------------- [131] Valerianella_eriocarpa_2B ----------------------------------------------------------------------------------TAGCGCTATTTGATAAGGACACTCCCGACCGTTGGTACAATGTCGCCAAGGCTGTT---GGTGGCAAAACCGCTGAAGAAGTGAAGAGGCATTATGAACTACTTGTGGAGGATGTCAAGCATATCGAGAATGGC--------------------------------------------------------------------------- [131] Valerianella_locusta_2B ------------------------------------------------------------AACAAGGCGTTTGAAAGGGCACTGGCTGTGTATGACAAGGACACACCTGACCGGTGGTACAATGTGGCCAGGGCCGTT---GGTGGCAAAACAGCTGAGGAAGTGAAGAGGCATTACRAAATCCTTGTGCGGGATGTCAAGCATATCGAGAATGGC--------------------------------------------------------------------------- [153] Centranthus_ruber_2Bb -------------------------------------------------------------------------------------------------------CTCCCGACCGTTGGCAGAATATTGCCAAGGCAGTG---GGTGGAAAATCTGCAGAGGAAGTGAAAAGGCATTATGAAATCCTCATAGAAGACCTTAGGCACATCGAGTCT------------------------------------------------------------------------------ [107] Centranthus_ruber_2Ba ----------------------------------------------------------------------------------------------------------------------ACAATGTGGCCAAGGCTGTT---GACGGCGAAACTGCCGAGGAAGTGCAGAGGCATTATGAACTCCTTGTGAAGGACGTCAAACAT--------------------------------------------------------------------------------------- [83] Heptacodium_miconioides_1A ----------------------------------------------------------------------------------------------------------------------ACAACATTGCGAGGGCACTG---GGTGGAAAATCCATGGAGGAAGTGAAAAGGCAATATGAAATCCTCATAGAGGACCTCAGGCAC--------------------------------------------------------------------------------------- [83] Kolkwitzia_amabilis_2B ----------------------------------------------------------------------------------------------------------------------AYAATGTGGCTAGAGCTGTT---GGCGGCAAAACAGCCGAGGAAGTGAAGAGGCATTACGAAATCCTTGTGGAGGATGTCAAGCAT--------------------------------------------------------------------------------------- [83] Dipelta_floribunda_2B ----------------------------------------------------------------------------------------------------------------------ATAATGTGGCCAAGGCTGTT---GGTGGCAAAACCCCTGATGAGGTGAAGAGGCATTATGAACTCCTCGTTGAAGATGTCAAGCAT--------------------------------------------------------------------------------------- [83] Lonicera_x_bella_2B ----------------------------------------------------------------------------------------------------------------------ACAATGTGGCTAGAGCTGTT---GGCGGCAAAACCGCTGAGGAAGTGAAGAGGCATTACGAAATCCTTGTGGAGGATGTCAAGCAT--------------------------------------------------------------------------------------- [83] Symphoricarpos_orbiculatus_2B ----------------------------------------------------------------------------------------------------------------------ATAACGTGGCGAAGGCCGTG---GGTGGAAAATCAGAGGAGGAAGTAAAAAGGCATTACGAGATTCTTGTGAAGGATATTATGCGA--------------------------------------------------------------------------------------- [83] Weigela_hortensis_2A ----------------------------------------------------------------------------------------------------------------------ACAACATTGCAAGGGCAGTG---GGTGGAAAATCAGCCGAGGRGGTGAAAAGGCACTACGAAATCCTTATAGAGGACCTTAGGCAC--------------------------------------------------------------------------------------- [83] Diervilla_sessilifolia_2A ----------------------------------------------------------------------------------------------------------------------AYAATGTGGCCAAGGCTGTT---GGTGGCAAAACCCCCGAAGAGGTGAAGAAGCAGTACGAACTCCTCGTTCAAGRCGTTAAGCAT--------------------------------------------------------------------------------------- [83] Heptacodium_miconioides_2A ----------------------------------------------------------------------------------------------------------------------ATAATGTGGCTAGAGCAGTT---GGCGGCAAAACAGCTGAGGAAGTGAAGAGGCATTACGAAATCCTTGTGGAGGATGTCAAGCAT--------------------------------------------------------------------------------------- [83] Kolkwitzia_amabilis_2A ----------------------------------------------------------------------------------------------------------------------ACAACATTGCAAGGGCAGTG---GGTGGAAAATCWGCTGAGGAGGTGAAAAGGCACTATGAAATCCTCATAGAGGACCTTAGGCAC--------------------------------------------------------------------------------------- [83] Lonicera_morrowii_2A ----------------------------------------------------------------------------------------------------------------------AGAATATTGCGAGGGCAGTG---GGCGGAAAYTCGGCWGAGGAAGTAAAAATGCATTATGAAATCCTCATCGAGGACCTTATAGGC--------------------------------------------------------------------------------------- [83] Lonicera_x_bella_2A ----------------------------------------------------------------------------------------------------------------------ATAATGTGGCTAGAGCTGTT---GGCGGCAAAACAGCCGAGGAAGTGAAGAGGCATTACGAAATCCTTGTGGAGGATGTCAAGCAT--------------------------------------------------------------------------------------- [83] Symphoricarpos_orbiculatus_2A ----------------------------------------------------------------------------------------------------------------------ATAATGTGGCCAAGGCTGTT---GGTGGCAAAACCCCCGAGGAGGTGAAAAGGCATTACGAACTTCTTGTTGAGGATGTTAAGCAT--------------------------------------------------------------------------------------- [83] Viburnum_acerifolium_2A ----------------------------------------------------------------------------------------------------------------------ACAATGTGGCTAGAGCTGTT---GGCGGCAAAACCGCTGAGGAAGTGAAGAGGCATTACGAAATCCTTGTGAAGGATGTCAAGCAT--------------------------------------------------------------------------------------- [83] Sambucus_canadensis_2A ----------------------------------------------------------------------------------------------------------------------ACAACATTGCAAGGGCAGTG---GGTGGAAAATCAGCCGAGGAGGTGAAAAGGCACTACGAAATCCTCATAGAGGACCTTAGGCAC--------------------------------------------------------------------------------------- [83] Viburnum_acerifolium_2B ----------------------------------------------------------------------------------------------------------------------ACAACATTGCAAGGGCAGTG---GGTGGAAAATCGGCTGAGGATGTTAAAAGGCACTATGAAATCCTCATAGAGGATCTTAGGCAC--------------------------------------------------------------------------------------- [83] Morina_longifolia_2A ----------------------------------------------------------------------------------------------------------------------AGAATATTTTGAGGGCAGTG---GGTGGAAAATCGGCTGAGGAAGTGAAAAGGCATTATGAAATCCTCATTGAAGACCTTAGGCAT--------------------------------------------------------------------------------------- [83] Acanthocalyx_alba_2A ----------------------------------------------------------------------------------------------------------------------ACAACATTGCGAGAGCGGTG---GGTGGAAAATCTGCGGAGGAAGTGAAAAGGCACTATGAAATCCTCATAGAGGACCTTAGGCAC--------------------------------------------------------------------------------------- [83] Cryptothladia_chinensis_2A ----------------------------------------------------------------------------------------------------------------------acaacattgcgagagcggtg---ggtggaaaatctgcgGAGGAAGTGAAAAGGCACTATGAAATCCTCGTAGAGGACCTTAGGCAC--------------------------------------------------------------------------------------- [83] Morina_longifolia_2Bb ----------------------------------------------------------------------------------------------------------------------ataatgtggccagggccgtt---ggcggcaaaacggctgaggaggtgaagaggcaatacgaaatCcttgtggaggatgtcaagcat--------------------------------------------------------------------------------------- [83] Cryptothladia_chinensis_2Bb ----------------------------------------------------------------------------------------------------------------------AGAATATTGCGAGGGCAGTG---GGTGGAAAATCGGCAGAGGAAGTTAGAAGGCATTATGAAATCCTCATTGAAGACCTTAGGCAT--------------------------------------------------------------------------------------- [83] Cryptothladia_chinensis_2Ba ----------------------------------------------------------------------------------------------------------------------ACAACATTGCAAGGGCGGTT---GGTGGAAAATCGGCCGAGGAGGTGAAAAGGCACTATGAAATCCTTGTCGAGGACCTTAGGCAC--------------------------------------------------------------------------------------- [83] Morina_longifolia_2Ba ----------------------------------------------------------------------------------------------------------------------AYAATGTGGCCAAGGCTGTT---GGTGGCAAAACTGCCGAGGAAGTCAAGAGGCATTATGAGCTCCTCGTGGAGGACGTCAAGCAT--------------------------------------------------------------------------------------- [83] Acanthocalyx_alba_2B ----------------------------------------------------------------------------------------------------------------------ACAACATTGCGAGGGCGGTG---GGTGGAAAATCAGCAGAGGAAGTGAAAAGGCACTACGAAATCCTCATAGAGGACCTTAGGCAC--------------------------------------------------------------------------------------- [83] Symphoricarpos_orbiculatus_1B ----------------------------------------------------------------------------------------------------------------------ACAATGTGGCCAAGGCTGTT---GAAGGCAAAACTGCCGAGGAAGTGGAGAGGCATTACGAG--------------------------------------------------------------------------------------------------------------- [59] Lonicera_x_bella_1B ----------------------------------------------------------------------------------------------------------------------ATAACGTGGCCACGGCCGTG---GGTGGAAAATCAGCAGAAGAAGTGAAGAGGCATTACGAG--------------------------------------------------------------------------------------------------------------- [59] Heptacodium_miconioides_1B -----------------------------------------------------------------------------------------------------------------------------------------------TGGAAAATCAGCAGAAGAAGTGAAGAGGCATTACGAGGTCCTAGAGACTAC------------------------------------------------------------------------------------------------- [51] Weigela_hortensis_1B ----------------------------------------------------------------------------------------------------------------------ACAATGTGGCCAAGGCTGTT---GGTGGCAAAACTGCCGAGGAAGTCAAGAGGCATTATGAGCTCCTCGTGGAGGACGTCAAGCAT--------------------------------------------------------------------------------------- [83] Cryptothladia_chinensis_1Bb ----------------------------------------------------------------------------------------------------------------------ACAACATTGCGAGGGCGGTT---GGTGGAAAATCAGTGGAGGAAGTGAAAAGGCACTACGAAATCCTCATCGAGGACCTTAGGCAC--------------------------------------------------------------------------------------- [83] Acanthocalyx_alba_1B ---------------------------------------------------------------------------AGGGCGTTGGCGGTGTTCGACAAGGACACCCCCGACCGTTGGGACAACGTGGCAAGGGCCGTG---GGGGGCCGGACCCCAGAAGAAGTGAAGAGGCATTATGAAATCCTCGTGGAAGACATCAAGTTTATAGAGAGCGGTAGAGTTCCCTTCCCAAACTACAGG--------------------------------------------------- [162] Antirrhinum_majus_AmRL1 ---------------------------------------------------------------------------AGGGCATTGGCGGTTTACGATCAAGAAACCCCCGATCGATGGGCCAATGTGGCGAGGGCCGTTGGAGCTGGACGTACCGTGGAAGAAGTGAAGAGGCACTATGAGATACTTTTGGAAGACATTGGATACATAGAAAGTGGCAAAGTGGCATATCCTAACTATAGG--------------------------------------------------- [165] Dipelta_floribunda_1B ---------------------------------------------TGGACCGCGAAGGAAAACAAGGCGTTCGAGCAGGCATTAGCAGTTTATGACAAGGACACTCCTGATCGTTGGGTCAACGTGGCTAAGGCTGTG---CCTGGACGAACCGTTGAAGAAGTGAAGAGACATTATGAAATTCTTGTGGAGGATGTGAAGAGTATCGAGAGTGGGAAAGTACCATTCCCTAATTACAGG--------------------------------------------------- [192] Morina_longifolia_1B ---------------------------------------------TGGACGCCGAAGCAAAACAAACTATTCGAGAAGGCATTAGCTAAGTACGATAAGGACACTCCCGACCGATGGCAAAACATCGCTAGGGCCGTC---GGGGGCAAATCCGCCGAGGAAGTAAAAAGGCACTATGAGATTCTTGTGGAGGATCTCAAGCACATTGAATCTGGAAATGTCCCATATCCTAAATACGTA--------------------------------------------------- [192] Cryptothladia_chinensis_1Ba ATGGCATCAGGCTCAATG---TCTTCTTATGGCTCTGGCTCA---TGGACTGTTAAGCAGAACAAAGCCTTTGAGCGTGCTCTAGCAGTCTATGACCAAGACACTCCGGACCGTTGGCACAATGTTGCTAGAGCTGTT---GGTGGTAAAACACCAGAAGAAGCTAAGAGACAGTATGACCTTCTAGTTCGTGACATCGAAAGCATCGAGAATGGTCACGTGCCATTCCCTGACTACAAGACT---ACTACAGGAAAC---AGCAACAGAGGCAGGCTGCGTGATGAGGAA [276] Diervilla_sessilifolia_1B ATGGCATCAAGCTCAATG---TCTTCTCAGAGCTCTGGCTCG---TGGACTGCTAAGCAGAACAAAGCCTTTGAGCAGGCTCTAGCAACCTATGACCAGGACACTCCTAACCGTTGGCAAAATGTTGCCAAAGTCGTG---GGTGGAAAAACAACAGAGGAGGTAAAGAGACACTACGAACTCTTAGTGCAAGACATCAACAGCATAGAGAACGGTCATGTTCCATTCCCAAACTACAGGACT---AGTGGAGGC------TGCACTAATGGCAGGCTTAGTCAGGAGGAA [273] Acanthocalyx_alba_1A ATGGCTTCGACT---------------CGTGGTTCTGGCCGCCCTTGGTCCGCCAAGGAGAACAAAGCCTTCGAAAGAGCATTGGCGGTTTACGACAAAGACACCCCAGACCGTTGGGCTAACGTGGCTAGGGCCGTG---GAGGGACGAACACCGGAAGAAGTGAAGAAGCACTATGAAATTCTAGTGGAGGATATCAAGTATATTGAGAGTGGGAAAGTGCCCTTCCCCAACTACAGGACC---ACCGGTGGT---AACATGAAA---------------ACTGACGAG [252] Cryptothladia_chinensis_1A ------------------------------------------------------------------------------------------------------------------------AACATAGCCAGGGCAGTT---AGCGGAAAATCCGCGGAGGAAGTAAGGCGGCATTACGAGGTTCTAGAGAAGGACATTATGCAGATTGAAACTGATCAGGTTCCTATTCCAAATTATGGAGCC---ATTGCCACCAAATCTAGAGGCTACGGC---------AATGAGCAA [156] Sixalix_atropurpurea_1A ATGGCATCAAGTTCGATGACATCTAGTTCA---------------TGGACACAAAAGCAAAATAAGCAGTTCGAGGAGGCTTTAGCCATGTACGGTAATGATACACCGGACTGCTGGCAAAATATAGCCCGAAAAGTT---GGTGGAAAATCGGCTGAGGAAATAAGGAGGCATTATGAGGTGTTAGTTAAGGAAATTATGAAGATTGAAACTGATCAAGTTCCAATTCCAAATTATAATAAA---GTGAAGGGG---TCCAACAGCAGA------------GGATATGGC [255] Valerianella_eriocarpa_1A ATGGCATCAAGCTCCATGACATCTTCACGTGGCTCGTCCTCCTTGTGGACGCCTAAGCAAAATAGACAATTTGAGGAGGCGTTGACCATGTTCGATAAGGACACACCCGACCGTTGGCAAAACATAGCGAGACGAATT---GATGGGAAATCAGCCGAGCAAGTGAGGAGGTATTATGAGGAACTACTCAAGGACATTACTCGTATTGAAAATGACCAAGTGCCAATTCCAAATTACAAAACCAATAACCGAGGATAT---ATATGGCAA--------------------- [264] Dipelta_floribunda_1A ATGGCATCAAGCTCCGTG---TCCTCTCGCGGTTCGGGCTCG---TGGACTGCTCAGCAGAACAAAGCCTTTGAAAGGGCTTTGGCTGTTTATGACAGGGACACACCCGACCGTTGGCATAATGTAGCCAGGGCAGTT---GGTGGAAAAACTGCTGAAGAAGTGAAAAGGCATTACGAAATCCTCGTGGAGGATGTCAAGCATATTGAGTCAGGCCGAGTTCCCTTCCCTAATTACAGGACT------ACCGGGGCA---AATGGCCACTCAAAG---ACTGGTGAGGAA [270] Symphoricarpos_occidentalis_1A ATGGCGTCAAACTCA------------AGAAGTTCAATCTCACCATGGACGTTTAGTCAAAACAAGATGTTCGAGAGGGCCTTGGCAGTTTACGACAAGGACACACCCGACCGATGGCACAATGTGGCAAAAGCTGTC---GGAGGGAAAACTGTAGAAGAAGTGAAGCGCCACTATGACATTCTCGTCGAGGATCTCATCAACATCGAGACTGGTCGTGTCCCTTTGCCCAATTACAAGACC---TTCGAATCTAACTCAAGAAGCATCAAT---------GACTTTGAC [264] Lonicera_maackii_1A ATGGCCTCTAGTTCTATG---AGCTCG---------AGCTCTTCTTGGACGTCTAAGCAAAACAAGATGTTCGAGAGGGCTTTAGCCGTTTACGATAAAGACACTCCCGACCGTTGGCAAAACGTGGCTAAAGCAGTT---GGAAGTAAATCTGCAGAGGAAGTTAAACGTCACTACGACATCCTCGTTGAAGATCTCATGAACATCGAACAAGACTTAGTACCTTTGCCTAAATACAAAACC---GTCGATGTTGGAAGTAAATCTAGAGGC---ATCGATGATTTTGAT [270] Lonicera_x_bella_1A ATGGCTTCTAGTTCAATGAGCACCTCATCA---------------TGGACAGCTAGAGAGGACAAGCAATTCGAAATGGCGTTGGCGAAATTCGACAAGGACACTCCTGACCGTTGGCAAAAAATTGCAAGGGCAGTT---GGTGGGAAATCAACTGAAGAAGTAAAGCGACACTATGAATTGCTCCTTAGGGATGTGAATGACATTGAGTCAGGACGCTATCCACAACCTAGGTACCGTAAC---------------------------ACT---AAT------------ [231] Heptacodium_miconioides_2B ATGGCTTCCAACTCAATGAGCTCTAGCGCTTCT------------TGGACACGTAAGGAGAACAAATTATTTGAAAGGGCGTTGGCTACATATGACCAGGACACTCCTGACCGTTGGCATAACGTTGCAAGAGCCGTT---GGCGGCAAATCAGCTGAAGAAGTAAGGCGACACTACGAGCTCCTCATTAGGGATGTCAATGACATTGAGTCAGGGCGTTATCCACATCCCAATTACCGTTCA------------------AAT---GGAAACAACCAC------------ [243] Sambucus_canadensis_1A ------TCTTCA---------------AATGGCTCCGGCTCCTCTTGGACAGCCAAACAAAATAAGCTATTCGAGAAGGCCCTGGCTGTATACGACAAAGACACCCCAGACCGCTGGCAAAATGTGGCCAAGGCCGTG---GGTGGCAAGTCTCCTGAAGAAGTTAAGAGGCACTATGATCGTCTCGTGGAAGATCTCGTGTACATAGAATCCGGCCAAGCCCCTCTGCCGAATTACAAG------CCCTCTGGC---AGCAATTGGAGC------------TGGGAAGAA [246] Viburnum_acerifolium_1B ATGGCTTATTTC------ACGTCTTCACATGGTTCTAGCTCCTCTTGGACGCCCAAACAAAACAAGCTGTTTGAGAAGGCACTGGCTGTCTATGACAAAGACACCCCAGACCGCTGGCAAAATGTGGCCAAGGCTGTG---GGTGGCAAGTCGGCAGAAGAAGTTAAGATGCACTACGATCGTCTTGTGGAGGATCTTACATATATAGAATCCGGCCAAGCTCCACTGCCAAACTACAAG------CCCTCTGGG---AGCAAT---aGTACG------------------ [252] Vitis.vinifera_GSVIVT01018944001 ATGGCATCCAACTCTATGACTTCTTCACGTACCTCTGGCTCCTCTTGGACACCCAAGCAAAACAAACTATTTGAAAAGGCACTGGCAAAGTATGACAAGGACACCCCTGACCGCTGGCAGAATATTGCCAAGGCCGTG---GGTGGGAAATCTGCGGAGGAAGTGAAAAGGCACTATGAAATCCTCATAGAGGATGTCAAGCACATCGAGTCCGGCAAAGTTCCATTTCCCAATTACAGG--------------------------------------------------- [237] Populus_trichocarpa_gw1.57.329.1 ATGGCATCAGGG---------TCTCGCATGGGCTCTGGC---TTATGGACTTCAAAGCAAAACAAACTGTTTGAAAAGGCTCTAGCCTTGTATGACAAGGACACCCCAGACCGTTGGCAGAATGTAGCCAAGGCTGTG---GGTGGGAAGTCTGCCGAGGAAGTGAAGAGACACTATGAGATCCTCATTGAGGACCTCAAACATATCGAATCGGGCCATGTTCCGATTCCTAATTACAAG------TCCACTGGA---AGCAAC---AGC------ATTGGTGATCAAGAA [258] Arabidopsis_thaliana_AtRL3 ATGGCATCCAGCTCAATG---TCCTCCCGCAGCTCTGGCTCATCCTGGACTGCCAAGCAAAACAAAGCCTTTGAAGAGGCGCTTGCAGTGTATGACAAGGACACCCCTGACCGCTGGTACAATGTTGCCAGGGCTGTT---GGTGGGAAAACCGTGGAGGAAGTGAAGAGGCACTATGAGATCCTTGTTGAGGATATCAAGAGCATCGACTCAGACAAAGTGCCCTTCCCCAATTACAAG------ACTACCGGAGCTAGTGGCCGGTCCAAC---ATGAGCGACCAGGAA [276] Arabidopsis_thaliana_AtRL4 ATGGCATCCAATTCTCTCAACTCTTCACGTAACTGTAGTTCCTCTTGGACCCCCAAGCAAAACAAACTATTCGAAAAGGCCCTGGCTTTGTATGACAAGGACACCCCTGACCGCTGGCATAATGTTGCCAAAGCTGTG---GGTGGGAAATCTGCAGAGGAAGTGGAGAGGCACTATGAAATTCTCATCAAGGATGTCAGGGAAATTGAGTCTGGTCGGGTTCCATTCCCTAATTACAGGTCA---AGT---GGA---------AACAGCAAC------------------ [255] ; END; BEGIN CODONS; CODONPOSSET * CodonPositions = 1: 1-289\3, 2: 2-290\3, 3: 3-291\3 291; CODESET * UNTITLED = Universal: all ; END; BEGIN ASSUMPTIONS; OPTIONS DEFTYPE=unord PolyTcount=MINSTEPS ; END; BEGIN TREES; TRANSLATE 1 Populus_trichocarpa_eugene3.00020323, 2 Populus_trichocarpa_gw1.V.1367.1, 3 Arabidopsis_thaliana_AtRL6, 4 Arabidopsis_thaliana_AtRL5, 5 Antirrhinum_majus_RL2, 6 Antirrhinum_majus_RL4, 7 Antirrhinum_majus_RL3, 8 Symphoricarpos_orbiculatus_3, 9 Lonicera_x_bella_3, 10 Acanthocalyx_alba_3, 11 Cryptothladia_chinensis_3, 12 Morina_longifolia_3, 13 Vitis_vinifera_GSVIVT01031982001, 14 Arabidopsis_thaliana_AtRL2, 15 Arabidopsis_thaliana_AtRL1, 16 Vitis_vinifera_GSVIVT01031975001, 17 Populus_trichocarpa_fgenesh4_pm.C_LG_IV000458, 18 Bournea_leiophylla_RAD, 19 Veronica_montana_RAD, 20 Antirrhinum_majus_RADIALIS, 21 Gratiola_officinalis_RAD, 22 Diervilla_sessilifolia_2B, 23 Weigela_hortensis_2B, 24 Sixalix_atropurpurea_2Bb, 25 Dipsacus_pilosus_2Bc, 26 Dipsacus_pilosus_2Ba, 27 Sixalix_atropurpurea_2Ba, 28 Dipsacus_pilosus_2Bb, 29 Fedia_cornucopiae_2Bc, 30 Fedia_cornucopiae_2Ba, 31 Fedia_cornucopiae_2Bb, 32 Valerianella_eriocarpa_2B, 33 Valerianella_locusta_2B, 34 Centranthus_ruber_2Bb, 35 Centranthus_ruber_2Ba, 36 Heptacodium_miconioides_1A, 37 Kolkwitzia_amabilis_2B, 38 Dipelta_floribunda_2B, 39 Lonicera_x_bella_2B, 40 Symphoricarpos_orbiculatus_2B, 41 Weigela_hortensis_2A, 42 Diervilla_sessilifolia_2A, 43 Heptacodium_miconioides_2A, 44 Kolkwitzia_amabilis_2A, 45 Lonicera_morrowii_2A, 46 Lonicera_x_bella_2A, 47 Symphoricarpos_orbiculatus_2A, 48 Viburnum_acerifolium_2A, 49 Sambucus_canadensis_2A, 50 Viburnum_acerifolium_2B, 51 Morina_longifolia_2A, 52 Acanthocalyx_alba_2A, 53 Cryptothladia_chinensis_2A, 54 Morina_longifolia_2Bb, 55 Cryptothladia_chinensis_2Bb, 56 Cryptothladia_chinensis_2Ba, 57 Morina_longifolia_2Ba, 58 Acanthocalyx_alba_2B, 59 Symphoricarpos_orbiculatus_1B, 60 Lonicera_x_bella_1B, 61 Heptacodium_miconioides_1B, 62 Weigela_hortensis_1B, 63 Cryptothladia_chinensis_1Bb, 64 Acanthocalyx_alba_1B, 65 Antirrhinum_majus_AmRL1, 66 Dipelta_floribunda_1B, 67 Morina_longifolia_1B, 68 Cryptothladia_chinensis_1Ba, 69 Diervilla_sessilifolia_1B, 70 Acanthocalyx_alba_1A, 71 Cryptothladia_chinensis_1A, 72 Sixalix_atropurpurea_1A, 73 Valerianella_eriocarpa_1A, 74 Dipelta_floribunda_1A, 75 Symphoricarpos_occidentalis_1A, 76 Lonicera_maackii_1A, 77 Lonicera_x_bella_1A, 78 Heptacodium_miconioides_2B, 79 Sambucus_canadensis_1A, 80 Viburnum_acerifolium_1B, 81 Vitis.vinifera_GSVIVT01018944001, 82 Populus_trichocarpa_gw1.57.329.1, 83 Arabidopsis_thaliana_AtRL3, 84 Arabidopsis_thaliana_AtRL4 ; TREE * best = [&R] 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