#NEXUS [written Fri Sep 21 16:40:13 EDT 2012 by Mesquite version 2.75 (build 566) at dhcp-128-36-177-41.central.yale.edu/128.36.177.41] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=38; TAXLABELS Amolops_larutensis Bombina_pachypus Bufo_asper Bufo_cognatus Bufo_japonicus_Low Bufo_japonicus_Hi Bufo_americanus Bufo_terrestris Bufo_woodhousii Discoglossus_occipitalis Batrachyla_taeniata Leptodactylus_ocellatus Leptodacytlus_chaquensis Hyla_microcephala Occidozyga_laevis Pedostibes_hosei Physalaemus_pustulosus Polypedates_sp. Pseudacris_triseriata Rana_blythi Rana_dalmatina Rana_catesbeiana_Hi Rana_esculenta_Low Rana_esculenta_Hi Rana_clamitans Scaphiopus_couchii Scinax_boulengeri Ambystoma_opacum Plethodon_shermani Cynops_pyrrhogaster Desmognathus_ochrophaeus Bufo_bankorensis_Low Bufo_bankorensis_Hi Plethodon_cinereus Plethodon_jordani Rana_catesbeiana_Low Taricha_granulosa Triturus_carnifex ; END; BEGIN CHARACTERS; TITLE AmphibianT; DIMENSIONS NCHAR=4; FORMAT DATATYPE = CONTINUOUS GAP = - MISSING = ?; CHARSTATELABELS 1 Latitude, 2 Elevation, 3 T, 4 BS ; MATRIX Amolops_larutensis 3.0 350.0 0.99 12.0 Bombina_pachypus 40.0 800.0 0.81 6.0 Bufo_asper 3.0 350.0 0.08 12.0 Bufo_cognatus 35.0 365.0 1.97 2.0 Bufo_japonicus_Low 35.0 30.0 2.26 0.5 Bufo_japonicus_Hi 35.0 100.0 1.91 0.5 Bufo_americanus 41.0 370.0 2.57 3.0 Bufo_terrestris 33.0 33.0 1.93 2.0 Bufo_woodhousii 35.0 365.0 2.03 2.0 Discoglossus_occipitalis 0.0 420.0 -0.08 ? Batrachyla_taeniata 39.0 700.0 1.59 ? Leptodactylus_ocellatus 27.0 50.0 0.76 ? Leptodacytlus_chaquensis 27.0 50.0 0.65 ? Hyla_microcephala 9.0 70.0 1.51 ? Occidozyga_laevis 3.0 350.0 0.59 12.0 Pedostibes_hosei 5.0 200.0 0.51 12.0 Physalaemus_pustulosus 9.0 70.0 1.74 ? Polypedates_sp. 3.0 350.0 1.47 12.0 Pseudacris_triseriata 40.0 1550.0 1.08 2.0 Rana_blythi 5.0 200.0 0.49 12.0 Rana_dalmatina 40.0 1000.0 1.09 2.0 Rana_catesbeiana_Hi 37.0 105.0 1.71 2.0 Rana_esculenta_Low 41.0 10.0 1.24 ? Rana_esculenta_Hi 43.0 820.0 1.08 1.0 Rana_clamitans 43.0 150.0 1.44 3.0 Scaphiopus_couchii 31.0 992.0 1.9 4.0 Scinax_boulengeri 9.0 70.0 1.72 ? Ambystoma_opacum 33.0 33.0 1.68 ? Plethodon_shermani 35.0 1626.0 2.23 ? Cynops_pyrrhogaster 37.0 600.0 1.42 ? Desmognathus_ochrophaeus 35.0 1430.0 2.54 ? Bufo_bankorensis_Low 23.0 1100.0 1.58 7.0 Bufo_bankorensis_Hi 24.0 2100.0 1.58 12.0 Plethodon_cinereus 37.0 1200.0 2.47 6.0 Plethodon_jordani 35.0 980.0 2.54 3.0 Rana_catesbeiana_Low 36.0 49.0 1.56 4.5 Taricha_granulosa ? ? ? ? Triturus_carnifex 43.0 820.0 1.41 3.0 ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = Squared: 1 - 4; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = Brownian_default: 1 - 4; END; BEGIN TREES; Title AmphibianT; LINK Taxa = Taxa; TRANSLATE 1 Amolops_larutensis, 2 Bombina_pachypus, 3 Bufo_asper, 4 Bufo_cognatus, 5 Bufo_japonicus_Low, 6 Bufo_japonicus_Hi, 7 Bufo_americanus, 8 Bufo_terrestris, 9 Bufo_woodhousii, 10 Discoglossus_occipitalis, 11 Batrachyla_taeniata, 12 Leptodactylus_ocellatus, 13 Leptodacytlus_chaquensis, 14 Hyla_microcephala, 15 Occidozyga_laevis, 16 Pedostibes_hosei, 17 Physalaemus_pustulosus, 18 Polypedates_sp., 19 Pseudacris_triseriata, 20 Rana_blythi, 21 Rana_dalmatina, 22 Rana_catesbeiana_Hi, 23 Rana_esculenta_Low, 24 Rana_esculenta_Hi, 25 Rana_clamitans, 26 Scaphiopus_couchii, 27 Scinax_boulengeri, 28 Ambystoma_opacum, 29 Plethodon_shermani, 30 Cynops_pyrrhogaster, 31 Desmognathus_ochrophaeus, 32 Bufo_bankorensis_Low, 33 Bufo_bankorensis_Hi, 34 Plethodon_cinereus, 35 Plethodon_jordani, 36 Rana_catesbeiana_Low, 37 Taricha_granulosa, 38 Triturus_carnifex; TREE AmphibiansT = (((((((((((6:1.0,5:1.0):1.0,(33:1.0,32:1.0):1.0):1.0,(16:1.0,3:1.0):1.0):1.0,(4:1.0,(8:1.0,(7:1.0,9:1.0):1.0):1.0):1.0):1.0,((12:1.0,13:1.0):1.0,17:1.0):1.0):1.0,11:1.0):1.0,(27:1.0,(19:1.0,14:1.0):1.0):1.0):1.0,(15:1.0,(((((22:1.0,36:1.0):1.0,25:1.0):1.0,(20:1.0,((24:1.0,23:1.0):1.0,21:1.0):1.0):1.0):1.0,1:1.0):1.0,18:1.0):1.0):1.0):1.0,26:1.0):1.0,(10:1.0,2:1.0):1.0):1.0,((28:1.0,(30:1.0,38:1.0):1.0):1.0,(31:1.0,((29:1.0,35:1.0):1.0,34:1.0):1.0):1.0):1.0):1.0; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1348260013369; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 7986410493747061485; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 8551325372873707659; mqVersion 275; checksumv 0 3 2647135208 null numChars 4 numItems 1 min -0.08 max 2100.0 sumSquares 2.1185655186299995E7 NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState true false 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1245 663; setLocation 0 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; desuppress; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #8551325372873707659 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 0 -67; setLocation 0 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; colorCells #mesquite.charMatrices.NoColor.NoColor; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges on; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames on; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize on; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; getWindow; tell It; forceAutosize; endTell; hideWindow; getEmployee #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.cont.ItemsEditorForInfoPanel.ItemsEditorForInfoPanel; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;