#NEXUS [written Fri Sep 21 16:42:10 EDT 2012 by Mesquite version 2.75 (build 566) at dhcp-128-36-177-41.central.yale.edu/128.36.177.41] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=55; TAXLABELS Agkistrodon_piscivorus Agkistrodon_contortrix Boa_constrictor Coluber_viridiflavus Crotalus_atrox_hi Crotalus_atrox_low Crotalus_horridus Crotalus_oreganus Crotalus_molossus Thamnophis_sirtalis_parietalis_low Opheodrys_aestivus Thamnophis_sirtalis_concinnusnus Thamnophis_sirtalis_parietalis blank Amblyrhynchus_cristatus Amphibolurus_caudicinctus Amphibolurus_nuchalis Amphibolorus_muricatus Anolis_carolinensis Anolis_sagrei Aspidoscelis_inornatus Aspidoscelis_hyperythra Aspidoscelis_sexlineata Calotes_versicolor Chlamydosaurus_kingii Cordylus_giganteus Cordylus_polyzonus Crotaphytus_collaris Ctenophorus_pictus Ctenophorus_pictus_yellow Cyclura_nubila Egernia_whitii Lacerta_vivipara Sceloporus_undulatus_low Podarcis_sicula_low Phrynosoma_cornutum Phymaturus_antofagastensis Platysaurus_broadleyi Podarcis_melisellensis Podarcis_sicula_hi Pogona_barbata_low Pogona_barbata_hi Psammodromus_algirus Sceloporus_jarrovii Sceloporus_pyrocephalus Sceloporus_undulatus_hi Sceloporus_virgatus Sphenodon_punctatus Tiliqua_rugosa Uromastix_hardwicki Urosaurus_ornatus_low Urosaurus_ornatus_hi Tiliqua_nigrolutea Uta_stansburiana Varanus_albigularis ; END; BEGIN CHARACTERS; TITLE SquamatesT; DIMENSIONS NCHAR=4; FORMAT DATATYPE = CONTINUOUS GAP = - MISSING = ?; CHARSTATELABELS 1 Latitude, 2 Elevation, 3 T, 4 BS ; MATRIX Agkistrodon_piscivorus 33.47 237.0 1.26 3.9 Agkistrodon_contortrix 42.0 240.0 1.84 3.0 Boa_constrictor 16.0 100.0 0.86 ? Coluber_viridiflavus 46.12 47.0 1.64 2.0 Crotalus_atrox_hi 32.0 1451.1 2.14 3.0 Crotalus_atrox_low 32.0 850.0 1.77 3.0 Crotalus_horridus 41.0 460.3 0.31 ? Crotalus_oreganus 35.0 750.0 1.94 2.0 Crotalus_molossus 32.0 1451.1 1.81 1.5 Thamnophis_sirtalis_parietalis_low 51.0 220.0 1.78 1.0 Opheodrys_aestivus 35.0 74.0 1.15 3.0 Thamnophis_sirtalis_concinnusnus 45.0 73.0 1.93 3.0 Thamnophis_sirtalis_parietalis 51.0 282.0 1.28 3.0 blank ? ? ? ? Amblyrhynchus_cristatus 0.0 0.0 1.88 1.0 Amphibolurus_caudicinctus 21.0 93.7 1.71 2.0 Amphibolurus_nuchalis 21.0 93.7 1.46 6.0 Amphibolorus_muricatus 33.98 22.0 0.46 5.0 Anolis_carolinensis 29.95 0.0 1.14 4.0 Anolis_sagrei 26.0 1.0 1.43 6.0 Aspidoscelis_inornatus 32.0 1263.0 0.81 ? Aspidoscelis_hyperythra 23.0 60.0 1.78 5.0 Aspidoscelis_sexlineata 35.0 100.0 1.9 3.0 Calotes_versicolor 15.28 616.0 1.11 6.0 Chlamydosaurus_kingii 13.0 520.0 1.21 ? Cordylus_giganteus ? ? ? ? Cordylus_polyzonus ? ? ? ? Crotaphytus_collaris 36.0 320.5 1.48 2.0 Ctenophorus_pictus 32.58 208.0 1.39 6.0 Ctenophorus_pictus_yellow ? ? ? ? Cyclura_nubila 20.0 15.9 1.59 3.0 Egernia_whitii 43.0 25.0 1.33 2.0 Lacerta_vivipara 46.0 978.5 2.59 1.0 Sceloporus_undulatus_low 40.0 35.0 1.72 1.0 Podarcis_sicula_low 41.0 28.7 2.21 2.0 Phrynosoma_cornutum 35.0 379.0 2.05 2.0 Phymaturus_antofagastensis 27.0 4200.0 2.23 ? Platysaurus_broadleyi 15.0 542.0 1.99 1.5 Podarcis_melisellensis 42.0 0.0 2.15 ? Podarcis_sicula_hi 41.0 50.0 1.93 2.0 Pogona_barbata_low 28.0 131.0 1.44 3.2 Pogona_barbata_hi 28.0 435.0 1.0 4.0 Psammodromus_algirus 40.58 596.7 1.19 3.0 Sceloporus_jarrovii 31.88 1800.0 1.76 ? Sceloporus_pyrocephalus 19.3 620.0 1.56 5.0 Sceloporus_undulatus_hi 39.0 183.5 1.93 2.0 Sceloporus_virgatus 32.0 1650.0 1.88 2.0 Sphenodon_punctatus 40.67 170.4 1.23 3.0 Tiliqua_rugosa 37.0 278.3 1.63 2.0 Uromastix_hardwicki ? ? ? ? Urosaurus_ornatus_low 33.0 500.0 1.54 3.5 Urosaurus_ornatus_hi 34.0 823.0 1.71 2.0 Tiliqua_nigrolutea 42.0 600.0 0.95 3.0 Uta_stansburiana 37.0 36.0 2.11 4.0 Varanus_albigularis 19.0 1111.9 1.98 2.0 ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = Squared: 1 - 4; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = Brownian_default: 1 - 4; END; BEGIN TREES; Title SquamatesT; LINK Taxa = Taxa; TRANSLATE 1 Agkistrodon_piscivorus, 2 Agkistrodon_contortrix, 3 Boa_constrictor, 4 Coluber_viridiflavus, 5 Crotalus_atrox_hi, 6 Crotalus_atrox_low, 7 Crotalus_horridus, 8 Crotalus_oreganus, 9 Crotalus_molossus, 10 Thamnophis_sirtalis_parietalis_low, 11 Opheodrys_aestivus, 12 Thamnophis_sirtalis_concinnusnus, 13 Thamnophis_sirtalis_parietalis, 14 blank, 15 Amblyrhynchus_cristatus, 16 Amphibolurus_caudicinctus, 17 Amphibolurus_nuchalis, 18 Amphibolorus_muricatus, 19 Anolis_carolinensis, 20 Anolis_sagrei, 21 Aspidoscelis_inornatus, 22 Aspidoscelis_hyperythra, 23 Aspidoscelis_sexlineata, 24 Calotes_versicolor, 25 Chlamydosaurus_kingii, 26 Cordylus_giganteus, 27 Cordylus_polyzonus, 28 Crotaphytus_collaris, 29 Ctenophorus_pictus, 30 Ctenophorus_pictus_yellow, 31 Cyclura_nubila, 32 Egernia_whitii, 33 Lacerta_vivipara, 34 Sceloporus_undulatus_low, 35 Podarcis_sicula_low, 36 Phrynosoma_cornutum, 37 Phymaturus_antofagastensis, 38 Platysaurus_broadleyi, 39 Podarcis_melisellensis, 40 Podarcis_sicula_hi, 41 Pogona_barbata_low, 42 Pogona_barbata_hi, 43 Psammodromus_algirus, 44 Sceloporus_jarrovii, 45 Sceloporus_pyrocephalus, 46 Sceloporus_undulatus_hi, 47 Sceloporus_virgatus, 48 Sphenodon_punctatus, 49 Tiliqua_rugosa, 50 Uromastix_hardwicki, 51 Urosaurus_ornatus_low, 52 Urosaurus_ornatus_hi, 53 Tiliqua_nigrolutea, 54 Uta_stansburiana, 55 Varanus_albigularis; TREE SquamatesT = ((((((((23:1.0,21:1.0):1.0,22:1.0):1.0,(43:1.0,(33:1.0,(39:1.0,(35:1.0,40:1.0):1.0):1.0):1.0):1.0):1.0,55:1.0):1.0,((((12:1.0,(13:1.0,10:1.0):1.0):1.0,(4:1.0,11:1.0):1.0):1.0,((1:1.0,2:1.0):1.0,((8:1.0,7:1.0):1.0,((5:1.0,6:1.0):1.0,9:1.0):1.0):1.0):1.0):1.0,3:1.0):1.0):1.0,(((((19:1.0,20:1.0):1.0,37:1.0):1.0,(28:1.0,(31:1.0,15:1.0):1.0):1.0):1.0,(((((45:1.0,44:1.0):1.0,(47:1.0,(34:1.0,46:1.0):1.0):1.0):1.0,54:1.0):1.0,(51:1.0,52:1.0):1.0):1.0,36:1.0):1.0):1.0,(24:1.0,(29:1.0,((42:1.0,41:1.0):1.0,(25:1.0,(18:1.0,(17:1.0,16:1.0):1.0):1.0):1.0):1.0):1.0):1.0):1.0):1.0,((32:1.0,(53:1.0,49:1.0):1.0):1.0,38:1.0):1.0):1.0,48:1.0):1.0; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1348260130906; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 7843014795664707084; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 2889031326412916549; mqVersion 275; checksumv 0 3 2878002213 null numChars 4 numItems 1 min 0.0 max 4200.0 sumSquares 3.706898122820001E7 NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState true false 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1280 663; setLocation 0 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; desuppress; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #2889031326412916549 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; rowNamesWidth 190; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 0 -67; setLocation 0 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; colorCells #mesquite.charMatrices.NoColor.NoColor; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges on; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames on; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize on; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; getWindow; tell It; forceAutosize; endTell; hideWindow; getEmployee #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.cont.ItemsEditorForInfoPanel.ItemsEditorForInfoPanel; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;