#NEXUS [written Thu May 31 11:31:42 CST 2012 by Mesquite version 2.75 (build 564) at YuIto-PC/10.226.156.191] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=12; TAXLABELS 'Ruppia_maritima_F' 'Ruppia_maritima_A' 'Ruppia_polycarpa_B' 'Ruppia_maritima_E' 'Ruppia_polycarpa_A' 'Ruppia_maritima_B' 'Ruppia_maritima_C' 'Ruppia_maritima_D' 'Ruppia_maritima_G' 'Ruppia_maritima_H' 'Ruppia_cirrhosa_B' 'Ruppia_maritima_L' ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=2108; FORMAT DATATYPE = DNA INTERLEAVE GAP = - MISSING = -; MATRIX 'Ruppia_maritima_F' GTCCCTATTGTAATGCATGACTACATAACAGGGGGATTCACTGCAAATACTAGCTTGTCTCAATATTGCCGAGACAATGGGTTACTTCTTCATATTCACC 'Ruppia_maritima_A' GTCCCTATTGTAATGCATGACTACATAACAGGGGGATTCACTGCAAATACTAGCTTGGCTCAATATTGTCGGGACAATGGGTTACTTCTTCATATTCACC 'Ruppia_polycarpa_B' GTCCCTATTGTAATGCATGACTACATAACAGGGGGATTCACTGCAAATACTAGCTTGGCTCAATATTGTCGGGACAATGGGTTACTTCTTCATATTCACC 'Ruppia_maritima_E' GTCCCTATTGTAATGCATGACTACATAACAGGGGGATTCACTGCAAATACTAGCTTGGCTCAATATTGCCGAGACAATGGGTTACTTCTTCATATTCACC 'Ruppia_polycarpa_A' GTCCCTATTGTAATGCATGACTACATAACAGGGGGATTCACTGCAAATACTAGCTTGGCTCAATATTGCCGGGACAATGGGTTACTTCTTCATATTCACC 'Ruppia_maritima_B' GTCCCTATTGTAATGCATGACTACATAACAGGGGGATTCACTGCAAATACTAGCTTGGCTCAATATTGCCGGGACAATGGGTTACTTCTTCATATTCACC 'Ruppia_maritima_C' GTCCCTATTGTAATGCATGACTACATAACAGGGGGATTCACTGCAAATACTAGCTTGGCTCAATATTGCCGGGACAATGGGTTACTTCTTCATATTCACC 'Ruppia_maritima_D' GTCCCTATTGTAATGCATGACTACATAACAGGGGGATTCACTGCAAATACTAGCTTGGCTCAATATTGCCGGGACAATGGGTTACTTCTTCATATTCACC 'Ruppia_maritima_G' GTCCCTATTGTAATGCATGACTACATAACAGGGGGATTCACTGCAAATACTAGCTTGGCTCAATATTGCCGGGACAATGGGTTACTTCTTCATATTCACC 'Ruppia_maritima_H' GTCCCTATTGTAATGCATGACTACATAACAGGGGGATTCACTGCAAATACTAGCTTGGCTCAATATTGCCGAGACAATGGGTTACTTCTTCATATTCACC 'Ruppia_cirrhosa_B' GTCCCTATTGTAATGCATGACTACATAACAGGGGGATTCACTGCAAATACTAGCTTGTCTCAATATTGCCGAGACAATGGGTTACTTCTTCATATTCACC 'Ruppia_maritima_L' GTCCCTATTGTAATGCATGACTACATAACAGGGGGATTCACTGCAAATACTAGCTTGTCTCAATATTGCCGAGACAATGGGTTACTTCTTCATATTCACC 'Ruppia_maritima_F' GCGCAATGCATGCAGTTATTGATAGACAGAAGAATCACGGTATGCATTTTCGTGTACTAGCTAAAGCATTACGTATGTCTGGTGGGGATCATATCCACTC 'Ruppia_maritima_A' GCGCAATGCATGCAGTTATTGATAGACAGAAGAATCACGGTATGCATTTTCGTGTACTAGCTAAAGCATTACGTATGTCTGGTGGGGATCATATCCACTC 'Ruppia_polycarpa_B' GCGCAATGCATGCAGTTATTGATAGACAGAAGAATCACGGTATGCATTTTCGTGTACTAGCTAAAGCATTACGTATGTCTGGTGGGGATCATATCCACTC 'Ruppia_maritima_E' GCGCAATGCATGCAGTTATTGATAGACAGAAGAATCACGGTATGCATTTTCGTGTACTAGCTAAAGCATTACGTATGTCTGGTGGGGATCATATCCACTC 'Ruppia_polycarpa_A' GCGCAATGCATGCAGTTATTGATAGACAGAAGAATCACGGTATGCATTTTCGTGTACTAGCTAAAGCATTACGTATGTCTGGTGGAGATCATATCCACTC 'Ruppia_maritima_B' GCGCAATGCATGCAGTTATTGATAGACAGAAGAATCACGGTATGCATTTTCGTGTACTAGCTAAAGCATTACGTATGTCTGGTGGGGATCATATCCACTC 'Ruppia_maritima_C' GCGCAATGCATGCAGTTATTGATAGACAGAAGAATCACGGTATGCATTTTCGTGTACTAGCTAAAGCATTACGTATGTCTGGTGGGGATCATATCCACTC 'Ruppia_maritima_D' GCGCAATGCATGCAGTTATTGATAGACAGAAGAATCACGGTATGCATTTTCGTGTACTAGCTAAAGCATTACGTATGTCTGGTGGGGATCATATCCACTC 'Ruppia_maritima_G' GCGCAATGCATGCAGTTATTGATAGACAGAAGAATCACGGTATGCATTTTCGTGTACTAGCTAAAGCATTACGTATGTCTGGTGGGGATCATATCCACTC 'Ruppia_maritima_H' GCGCAATGCATGCAGTTATTGATAGACAGAAGAATCACGGTATGCATTTTCGTGTACTAGCTAAAGCATTACGTATGTCTGGTGGGGATCATATCCACTC 'Ruppia_cirrhosa_B' GCGCAATGCATGCAGTTATTGATAGACAGAAGAATCACGGTATGCATTTTCGTGTACTAGCTAAAGCATTACGTATGTCTGGTGGGGATCATATCCACTC 'Ruppia_maritima_L' GCGCAATGCATGCAGTTATTGATAGACAGAAGAATCACGGTATGCATTTTCGTGTACTAGCTAAAGCATTACGTATGTCTGGTGGGGATCATATCCACTC 'Ruppia_maritima_F' CGGGACAGTAGTAGGTAAACTAGAGGGTGAACGTGAGATGACTTTGGGTTTTGTTGATTTATTACGCGATGATTATATTGAAAAAGACCGAAGCCGTGGT 'Ruppia_maritima_A' CGGGACAGTAGTAGGTAAACTAGAGGGTGAACGTGAGATGACTTTGGGTTTTGTTGATTTATTACGCGATGATTATATTGAAAAAGACCGAAGCCGTGGT 'Ruppia_polycarpa_B' CGGGACAGTAGTAGGTAAACTAGAGGGTGAACGTGAGATGACTTTGGGTTTTGTTGATTTATTACGCGATGATTATATTGAAAAAGACCGAAGCCGTGGT 'Ruppia_maritima_E' CGGGACAGTAGTAGGTAAACTAGAGGGTGAACGTGAGATGACTTTGGGTTTTGTTGATTTATTACGCGATGATTATATTGAAAAAGACCGAAGCCGTGGT 'Ruppia_polycarpa_A' CGGGACAGTAGTAGGTAAACTAGAGGGTGAACGTGAGATGACTTTGGGTTTTGTTGATTTATTACGCGATGATTATATTGAAAAAGACCGAAGCCGTGGT 'Ruppia_maritima_B' CGGGACAGTAGTAGGTAAACTAGAGGGTGAACGTGAGATGACTTTGGGTTTTGTTGATTTATTACGCGATGATTATATTGAAAAAGACCGAAGCCGTGGT 'Ruppia_maritima_C' CGGGACAGTAGTAGGTAAACTAGAGGGTGAACGTGAGATGACTTTGGGTTTTGTTGATTTATTACGCGATGATTATATTGAAAAAGACCGAAGCCGTGGT 'Ruppia_maritima_D' CGGGACAGTAGTAGGTAAACTAGAGGGTGAACGTGAGATGACTTTGGGTTTTGTTGATTTATTACGCGATGATTATATTGAAAAAGACCGAAGCCGTGGT 'Ruppia_maritima_G' CGGGACAGTAGTAGGTAAACTAGAGGGTGAACGTGAGATGACTTTGGGTTTTGTTGATTTATTACGCGATGATTATATTGAAAAAGACCGAAGCCGTGGT 'Ruppia_maritima_H' CGGGACAGTAGTAGGTAAACTAGAGGGTGAACGTGAGATGACTTTGGGTTTTGTTGATTTATTACGCGATGATTATATTGAAAAAGACCGAAGCCGTGGT 'Ruppia_cirrhosa_B' CGGGACAGTAGTAGGTAAACTAGAGGGTGAACGTGAGATGACTTTGGGTTTTGTTGATTTATTACGCGATGATTATATTGAAAAAGACCGAAGCCGTGGT 'Ruppia_maritima_L' CGGGACAGTAGTAGGTAAACTAGAGGGTGAACGTGAGATGACTTTGGGTTTTGTTGATTTATTACGCGATGATTATATTGAAAAAGACCGAAGCCGTGGT 'Ruppia_maritima_F' ATTTTTTTCACCCAAGATTGGGTCTCTATGCCAGGTGTTCTGCCTGTGGCTTCAGGGGGTATTCATGTTTGGCATATGCCTGCGTTGACCGAGATCTTTG 'Ruppia_maritima_A' ATTTTTTTCACCCAAGATTGGGTCTCTATGCCAGGTGTTCTGCCTGTGGCTTCAGGGGGTATTCATGTTTGGCATATGCCTGCGTTGACCGAGATCTTTG 'Ruppia_polycarpa_B' ATTTTTTTCACCCAAGATTGGGTCTCTATGCCAGGTGTTCTGCCTGTGGCTTCAGGGGGTATTCATGTTTGGCATATGCCTGCGTTGACCGAGATCTTTG 'Ruppia_maritima_E' ATTTTTTTCACCCAAGATTGGGTCTCTATGCCAGGTGTTCTGCCTGTGGCTTCAGGGGGTATTCATGTTTGGCATATGCCTGCGTTGACCGAGATCTTTG 'Ruppia_polycarpa_A' ATTTTTTTCACCCAAGATTGGGTCTCTATGCCAGGTGTTCTGCCTGTGGCTTCAGGGGGTATTCATGTTTGGCATATGCCTGCGTTGACCGAGATCTTTG 'Ruppia_maritima_B' ATTTTTTTCACCCAAGATTGGGTCTCTATGCCAGGTGTTCTGCCTGTGGCTTCAGGGGGTATTCATGTTTGGCATATGCCTGCGTTGACCGAGATCTTTG 'Ruppia_maritima_C' ATTTTTTTCACCCAAGATTGGGTCTCTATGCCAGGTGTTCTGCCTGTGGCTTCAGGGGGTATTCATGTTTGGCATATGCCTGCGTTGACCGAGATCTTTG 'Ruppia_maritima_D' ATTTTTTTCACCCAAGATTGGGTCTCTATGCCAGGTGTTCTGCCTGTGGCTTCAGGGGGTATTCATGTTTGGCATATGCCTGCGTTGACCGAGATCTTTG 'Ruppia_maritima_G' ATTTTTTTCACCCAAGATTGGGTCTCTATGCCAGGTGTTCTGCCTGTGGCTTCAGGGGGTATTCATGTTTGGCATATGCCTGCGTTGACCGAGATCTTTG 'Ruppia_maritima_H' ATTTTTTTCACCCAAGATTGGGTCTCTATGCCAGGTGTTCTGCCTGTGGCTTCAGGGGGTATTCATGTTTGGCATATGCCTGCGTTGACCGAGATCTTTG 'Ruppia_cirrhosa_B' ATTTTTTTCACCCAAGATTGGGTCTCTATGCCAGGTGTTCTGCCTGTGGCTTCAGGGGGTATTCATGTTTGGCATATGCCTGCGTTGACCGAGATCTTTG 'Ruppia_maritima_L' ATTTTTTTCACCCAAGATTGGGTCTCTATGCCAGGTGTTCTGCCTGTGGCTTCAGGGGGTATTCATGTTTGGCATATGCCTGCGTTGACCGAGATCTTTG 'Ruppia_maritima_F' GAGATGATTCTGTACTACAATTTGGCGGAGGAACCTTGGGACACCCTTGGGGAAATGCGCCGGGCGCAGTAGCTAATCGTGTGGCTTTGGAAGCGTGTGT 'Ruppia_maritima_A' GAGATGATTCTGTACTACAATTTGGCGGAGGAACCTTGGGACACCCTTGGGGAAATGCGCCGGGCGCAGTAGCTAATCGTGTGGCTTTGGAAGCGTGTGT 'Ruppia_polycarpa_B' GAGATGATTCTGTACTACAATTTGGCGGAGGAACCTTGGGACACCCTTGGGGAAATGCGCCGGGCGCAGTAGCTAATCGTGTGGCTTTGGAAGCGTGTGT 'Ruppia_maritima_E' GAGATGATTCTGTACTACAATTTGGCGGAGGAACCTTGGGACACCCTTGGGGAAATGCGCCGGGCGCAGTAGCTAATCGTGTGGCTTTGGAAGCGTGTGT 'Ruppia_polycarpa_A' GAGATGATTCTGTACTACAATTTGGCGGAGGAACCTTGGGGCACCCTTGGGGAAATGCTCCGGGCGCAGTAGCTAATCGTGTGGCTTTGGAAGCGTGTGT 'Ruppia_maritima_B' GAGATGATTCTGTACTACAATTTGGCGGAGGAACCTTGGGACACCCTTGGGGAAATGCGCCGGGCGCAGTAGCTAATCGTGTGGCTTTGGAAGCGTGTGT 'Ruppia_maritima_C' GAGATGATTCTGTACTACAATTTGGCGGAGGAACCTTGGGACACCCTTGGGGAAATGCGCCGGGCGCAGTAGCTAATCGTGTGGCTTTGGAAGCGTGTGT 'Ruppia_maritima_D' GAGATGATTCTGTACTACAATTTGGCGGAGGAACCTTGGGACACCCTTGGGGAAATGCGCCGGGCGCAGTAGCTAATCGTGTGGCTTTGGAAGCGTGTGT 'Ruppia_maritima_G' GAGATGATTCTGTACTACAATTTGGCGGAGGAACCTTGGGACACCCTTGGGGAAATGCGCCGGGCGCAGTAGCTAATCGTGTGGCTTTGGAAGCGTGTGT 'Ruppia_maritima_H' GAGATGATTCTGTACTACAATTTGGCGGAGGAACCTTGGGACACCCTTGGGGAAATGCGCCGGGCGCAGTAGCTAATCGTGTGGCTTTGGAAGCGTGTGT 'Ruppia_cirrhosa_B' GAGATGATTCTGTACTACAATTTGGCGGAGGAACCTTGGGACACCCTTGGGGAAATGCGCCGGGCGCAGTAGCTAATCGTGTGGCTTTGGAAGCGTGTGT 'Ruppia_maritima_L' GAGATGATTCTGTACTACAATTTGGCGGAGGAACCTTGGGACACCCTTGGGGAAATGCGCCGGGCGCAGTAGCTAATCGTGTGGCTTTGGAAGCGTGTGT 'Ruppia_maritima_F' ACAAGCTCGTAATGAAGGGCGTGATCTGGCTAGTGAAGGTAAGCTTTTTCGGTCCGAGAAGTGCATTGTCGGAACCGGGATAGAACGCCAAGCGGCCTTG 'Ruppia_maritima_A' ACAAGCTCGTAATGAAGGGCGTGATCTGGCTAGTGAAGGTAAGCTTTTTCGGTCCGAGAAGTGCATTGTCGGAACCGGGATAGAACGCCAAGCGGCCTTG 'Ruppia_polycarpa_B' ACAAGCTCGTAATGAAGGGCGTGATCTGGCTAGTGAAGGTAAGCTTTTTCGGTCCGAGAAGTGCATTGTCGGAACCGGGATAGAACGCCAAGCGGCCTTG 'Ruppia_maritima_E' ACAAGCTCGTAATGAAGGGCGTGATCTGGCTAGTGAAGGTAAGCTTTTTCGGTCCGAGAAGTGCATTGTCGGAACCGGGATAGAACGCCAAGCGGCCTTG 'Ruppia_polycarpa_A' ACAAGCTCGTAATGAAGGGCGTGATCTGGCTAGTGAAGGTAAGCTTTTTCGGTCCGAGAAGTGCATTGTCGGAACCGGGATAGAACGCCAAGCGGCCTTG 'Ruppia_maritima_B' ACAAGCTCGTAATGAAGGGCGTGATCTGGCTAGTGAAGGTAAGCTTTTTCGGTCCGAGAAGTGCATTGTCGGAACCGGGATAGAACGCCAAGCGGCCTTG 'Ruppia_maritima_C' ACAAGCTCGTAATGAAGGGCGTGATCTGGCTAGTGAAGGTAAGCTTTTTCGGTCCGAGAAGTGCATTGTCGGAACCGGGATAGAACGCCAAGCGGCCTTG 'Ruppia_maritima_D' ACAAGCTCGTAATGAAGGGCGTGATCTGGCTAGTGAAGGTAAGCTTTTTCGGTCCGAGAAGTGCATTGTCGGAACCGGGATAGAACGCCAAGCGGCCTTG 'Ruppia_maritima_G' ACAAGCTCGTAATGAAGGGCGTGATCTGGCTAGTGAAGGTAAGCTTTTTCGGTCCGAGAAGTGCATTGTCGGAACCGGGATAGAACGCCAAGCGGCCTTG 'Ruppia_maritima_H' ACAAGCTCGTAATGAAGGGCGTGATCTGGCTAGTGAAGGTAAGCTTTTTCGGTCCGAGAAGTGCATTGTCGGAACCGGGATAGAACGCCAAGCGGCCTTG 'Ruppia_cirrhosa_B' ACAAGCTCGTAATGAAGGGCGTGATCTGGCTAGTGAAGGTAAGCTTTTTCGGTCCGAGAAGTGCATTGTCGGAACCGGGATAGAACGCCAAGCGGCCTTG 'Ruppia_maritima_L' ACAAGCTCGTAATGAAGGGCGTGATCTGGCTAGTGAAGGTAAGCTTTTTCGGTCCGAGAAGTGCATTGTCGGAACCGGGATAGAACGCCAAGCGGCCTTG 'Ruppia_maritima_F' GATTCGGGAGTTTCCGCTATAGCGGAACACAAGGGAAAGATCATTTATACTGATACTCATCAAATGATTTTATCAAGTAATGGGAATATTATAAGCATTC 'Ruppia_maritima_A' GATTCGGGAGTTTCCGCTATAGCGGAACACAAGGGAAAGATCATTTATACCGATACTCATCAAATGATTTTATCAAGTAATGGGAATATTATAAGCATTC 'Ruppia_polycarpa_B' GATTCGGGAGTTTCCGCTATAGCGGAACACAAGGGAAAGATCATTTATACCGATACTCATCAAATGATTTTATCAAGTAATGGGAATATTATAAGCATTC 'Ruppia_maritima_E' GATTCGGGAGTTTCCGCTATAGCGGAACACAAGGGAAAGATCCTTTATACCGATACTCATCAAATGATTTTATCAAGTAATGGGAATATTATAAGCATTC 'Ruppia_polycarpa_A' GATTCGGGAGTTTCCGCTATAGCGGAACACAAGGGAAAGATCATTTATACCGATACTCATCAAATGATTTTATCAAGTAATGGGAATATTATAAGCATTC 'Ruppia_maritima_B' GATTCGGGAGTTTCCGCTATAGCGGAACACAAGGGAAAGATCATTTATACCGATACTCATCAAATGATTTTATCAAGTAATGGGAATATTATAAGCATTC 'Ruppia_maritima_C' GATTCGGGAGTTTCCGCTATAGCGGAACACAAGGGAAAGATCATTTATACCGATACTCATCAAATGATTTTATCAAGTAATGGGAATATTATAAGCATTC 'Ruppia_maritima_D' GATTCGGGAGTTTCCGCTATAGCGGAACACAAGGGAAAGATCATTTATACCGATACTCATCAAATGATTTTATCAAGTAATGGGAATATTATAAGCATTC 'Ruppia_maritima_G' GATTCGGGAGTTTCCGCTATAGCGGAACACAAGGGAAAGATCATTTATACCGATACTCATCAAATGATTTTATCAAGTAATGGGAATATTATAAGCATTC 'Ruppia_maritima_H' GATTCGGGAGTTTCCGCTATAGCGGAACACAAGGGAAAGATCCTTTATACCGATACTCATCAAATGATTTTATCAAGTAATGGGAATATTATAAGCATTC 'Ruppia_cirrhosa_B' GATTCGGGAGTTTCCGCTATAGCGGAACACAAGGGAAAGATCATTTATACTGATACTCATCAAATGATTTTATCAAGTAATGGGAATATTATAAGCATTC 'Ruppia_maritima_L' GATTCGGGAGTTTCCGCTATAGCGGAACACAAGGGAAAGATCATTTATACTGATACTCATCAAATGATTTTATCAAGTAATGGGAATATTATAAGCATTC 'Ruppia_maritima_F' CATTAGTTATGTATCAACGTTCCAACAAAAATACTTGTATGCACCAAAAACCCCGGGCTCCTCTGGGTAAATACATTAAAAAGGGTCAAATTTTAGCAGA 'Ruppia_maritima_A' CATTAGTTATGTATCAACGTTCCAACAAAAATACTTGTATGCACCAAAAACCCCGGGCTCCTCTGGGTAAATACATTAAAAAGGGTCAAATTTTAGCAGA 'Ruppia_polycarpa_B' CATTAGTTATGTATCAACGTTCCAACAAAAATACTTGTATGCACCAAAAACCCCGGGCTCCTCTGGGTAAATACATTAAAAAGGGTCAAATTTTAGCAGA 'Ruppia_maritima_E' CATTAGTTATGTATCAACGTTCCAACAAAAATACTTGTATGCACCAAAAACCCCGGGCTCCTCTGGGTAAATACATTAAAAAGGGTCAAATTTTAGCAGA 'Ruppia_polycarpa_A' CATTAGTTATGTATCAACGTTCCAACAAAAATACTTGTATGCACCAAAAACCCCGGGCTCCTCTGGGTAAATACATTAAAAAGGGTCAAATTTTAGCAGA 'Ruppia_maritima_B' CATTAGTTATGTATCAACGTTCCAACAAAAATACTTGTATGCACCAAAAACCCCGGGCTCCTCTGGGTAAATACATTAAAAAGGGTCAAATTTTAGCAGA 'Ruppia_maritima_C' CATTAGTTATGTATCAACGTTCCAACAAAAATACTTGTATGCACCAAAAACCCCGGGCTCCTCTGGGTAAATACATTAAAAAGGGTCAAATTTTAGCAGA 'Ruppia_maritima_D' CATTAGTTATGTATCAACGTTCCAACAAAAATACTTGTATGCACCAAAAACCCCGGGCTCCTCTGGGTAAATACATTAAAAAGGGTCAAATTTTAGCAGA 'Ruppia_maritima_G' CATTAGTTATGTATCAACGTTCCAACAAAAATACTTGTATGCACCAAAAACCCCGGGCTCCTCTGGGTAAATACATTAAAAAGGGTCAAATTTTAGCAGA 'Ruppia_maritima_H' CATTAGTTATGTATCAACGTTCCAACAAAAATACTTGTATGCACCAAAAACCCCGGGCTCCTCTGGGTAAATACATTAAAAAGGGTCAAATTTTAGCAGA 'Ruppia_cirrhosa_B' CATTAGTTATGTATCAACGTTCCAACAAAAATACTTGTATGCACCAAAAACCCCGGGCTCCTCTGGGTAAATACATTAAAAAGGGTCAAATTTTAGCAGA 'Ruppia_maritima_L' CATTAGTTATGTATCAACGTTCCAACAAAAATACTTGTATGCACCAAAAACCCCGGGCTCCTCTGGGTAAATACATTAAAAAGGGTCAAATTTTAGCAGA 'Ruppia_maritima_F' TGGCGCGGCTACTGTTGGTGGGGAACTCGCTTTGGGAAAAAACATATTAGTAGCTTATATGCCATGGGAAGGCTACAATTTTGAAGACGCGGTACTTATC 'Ruppia_maritima_A' TGGCGCGGCTACTGTTGGTGGGGAACTCGCTTTGGGAAAAAACATATTAGTAGCTTATATGCCATGGGAAGGCTACAATTTTGAAGACGCGGTACTTATC 'Ruppia_polycarpa_B' TGGCGCGGCTACTGTTGGTGGGGAACTCGCTTTGGGAAAAAACATATTAGTAGCTTATATGCCATGGGAAGGCTACAATTTTGAAGACGCGGTACTTATC 'Ruppia_maritima_E' TGGCGCGGCTACTGTTGGTGGGGAACTCGCTTTGGGAAAAAACATATTAGTAGCTTATATGCCATGGGAAGGCTACAATTTTGAAGACGCGGTACTTATC 'Ruppia_polycarpa_A' TGGCGCGGCCACTGTTGGTGGGGAACTCGCTTTGGGAAAAAACATATTAGTAGCTTATATGCCATGGGAAGGCTACAATTTTGAAGACGCGGTACTTATC 'Ruppia_maritima_B' TGGCGCGGCTACTGTTGGTGGGGAACTCGCTTTGGGAAAAAACATATTAGTAGCTTATATGCCATGGGAAGGCTACAATTTTGAAGACGCGGTACTTATC 'Ruppia_maritima_C' TGGCGCGGCTACTGTTGGTGGGGAACTCGCTTTGGGAAAAAACATATTAGTAGCTTATATGCCATGGGAAGGCTACAATTTTGAAGACGCGGTACTTATC 'Ruppia_maritima_D' TGGCGCGGCTACTGTTGGTGGGGAACTCGCTTTGGGAAAAAACATATTAGTAGCTTATATGCCATGGGAAGGCTACAATTTTGAAGACGCGGTACTTATC 'Ruppia_maritima_G' TGGCGCGGCTACTGTTGGTGGGGAACTCGCTTTGGGAAAAAACATATTAGTAGCTTATATGCCATGGGAAGGCTACAATTTTGAAGACGCGGTACTTATC 'Ruppia_maritima_H' TGGCGCGGCTACTGTTGGTGGGGAACTCGCTTTGGGAAAAAACATATTAGTAGCTTATATGCCATGGGAAGGCTACAATTTTGAAGACGCGGTACTTATC 'Ruppia_cirrhosa_B' TGGCGCGGCTACTGTTGGTGGGGAACTCGCTTTGGGAAAAAACATATTAGTAGCTTATATGCCATGGGAAGGCTACAATTTTGAAGACGCGGTACTTATC 'Ruppia_maritima_L' TGGCGCGGCTACTGTTGGTGGGGAACTCGCTTTGGGAAAAAACATATTAGTAGCTTATATGCCATGGGAAGGCTACAATTTTGAAGACGCGGTACTTATC 'Ruppia_maritima_F' AGTGAACGTTTGGTATATAATGATATTTATACTTCTTTTCATATACGGAAATATGAAATTCAGACTCATATAACAAGTCAAGGTCCCGAAAGAATCACTA 'Ruppia_maritima_A' AGTGAACGTTTGGTATATAATGATATTTATACTTCTTTTCATATACGGAAATATGAAATTCAGACTCATATAACAAGTCAAGGTCCCGAAAGAATTACTA 'Ruppia_polycarpa_B' AGTGAACGTTTGGTATATAATGATATTTATACTTCTTTTCATATACGGAAATATGAAATTCAGACTCATATAACAAGTCAAGGTCCCGAAAGAATTACTA 'Ruppia_maritima_E' AGTGAACGTTTGGTATATAATGATATTTATACTTCTTTTCATATACGGAAATATGAAATTCAGACTCATATAACAAGTCAAGGTCCCGAAAGAATCACTA 'Ruppia_polycarpa_A' AGTGAACGTTTGGTATATAATGATATTTATACTTCTTTTCATATACGGAAATATGAAATTCAGACTCATATAACAAGTCAAGGTCCCGAAAGAATCACTA 'Ruppia_maritima_B' AGTGAACGTTTGGTATATAATGATATTTATACTTCTTTTCATATACGGAAATATGAAATTCAGACTCATATAACAAGTCAAGGTCCCGAAAGAATTACTA 'Ruppia_maritima_C' AGTGAACGTTTGGTATATAATGATATTTATACTTCTTTTCATATACGGAAATATGAAATTCAGACTCATATAACAAGTCAAGGTCCCGAAAGAATTACTA 'Ruppia_maritima_D' AGTGAACGTTTGGTATATAATGATATTTATACTTCTTTTCATATACGGAAATATGAAATTCAGACTCATATAACAAGTCAAGGTCCCGAAAGAATTACTA 'Ruppia_maritima_G' AGTGAACGTTTGGTATATAATGATATTTATACTTCTTTTCATATACGGAAATATGAAATTCAGACTCATATAACAAGTCAAGGTCCCGAAAGAATCACTA 'Ruppia_maritima_H' AGTGAACGTTTGGTATATAATGATATTTATACTTCTTTTCATATACGGAAATATGAAATTCAGACTCATATAACAAGTCAAGGTCCCGAAAGAATCACTA 'Ruppia_cirrhosa_B' AGTGAACGTTTGGTATATAATGATATTTATACTTCTTTTCATATACGGAAATATGAAATTCAGACTCATATAACAAGTCAAGGTCCCGAAAGAATCACTA 'Ruppia_maritima_L' AGTGAACGTTTGGTATATAATGATATTTATACTTCTTTTCATATACGGAAATATGAAATTCAGACTCATATAACAAGTCAAGGTCCCGAAAGAATCACTA 'Ruppia_maritima_F' AGGAAATACCTCATTTAGAAGATCATTTACTCCGAAATTTAGACAGAAATGATTCGCGGACAACCAATGAGGGACGGTCATAATAAAGTTTACAAGTCCT 'Ruppia_maritima_A' AGGAAATACCTCATTTAGAAGATCATTTACTCCGAAATTTAGACAGAAATGATTCGCGGACAACCCATGAGGGACGGTCATAATAAAGTTTACAAGTCCT 'Ruppia_polycarpa_B' AGGAAATACCTCATTTAGAAGATCATTTACTCCGAAATTTAGACAGAAATGATTCGCGGACAACCCATGAGGGACGGTCATAATAAAGTTTACAAGTCCT 'Ruppia_maritima_E' AGGAAATACCTCATTTAGAAGATCATTTACTCCGAAATTTAGACAGAAATGATTCGCGGACAACCAATGAGGGACGGTCATAATAAAGTTTACAAGTCCT 'Ruppia_polycarpa_A' AGGAAATACCTCATTTAGAAGATCATTTACTCCGAAATTTAGACAGAAATGATTCGCGGACAACCAATGAGGGACGGTCATAATAAAGTTTACAAGTCCT 'Ruppia_maritima_B' AGGAAATACCTCATTTAGAAGATCATTTACTCCGAAATTTAGACAGAAATGATTCGCGGACAACCAATGAGGGACGGTCATAATAAAGTTTACAAGTCCT 'Ruppia_maritima_C' AGGAAATACCTCATTTAGAAGATCATTTACTCCGAAATTTAGACAGAAATGATTCGCGGACAACCAATGAGGGACGGTCATAATAAAGTTTACAAGTCCT 'Ruppia_maritima_D' AGGAAATACCTCATTTAGAAGATCATTTACTCCGAAATTTAGACAGAAATGATTCGCGGACAACCAATGAGGGACGGTCATAATAAAGTTTACAAGTCCT 'Ruppia_maritima_G' AGGAAATACCTCATTTAGAAGATCATTTACTCCGAAATTTAGACAGAAATGATTCGCGGACAACCAATGAGGGACGGTCATAATAAAGTTTACAAGTCCT 'Ruppia_maritima_H' AGGAAATACCTCATTTAGAAGATCATTTACTCCGAAATTTAGACAGAAATGATTCGCGGACAACCAATGAGGGACGGTCATAATAAAGTTTACAAGTCCT 'Ruppia_cirrhosa_B' AGGAAATACCTCATTTAGAAGATCATTTACTCCGAAATTTAGACAGAAATGATTCGCGGACAACCAATGAGGGACGGTCATAATAAAGTTTACAAGTCCT 'Ruppia_maritima_L' AGGAAATACCTCATTTAGAAGATCATTTACTCCGAAATTTAGACAGAAATGATTCGCGGACAACCAATGAGGGACGGTCATAATAAAGTTTACAAGTCCT 'Ruppia_maritima_F' TTTCAGATGTAATTGAAGGCAAAGAGGGAAGATTTAGGGAGACTCTGCTTGGTAAACGAGTCGATTATTCGGGACGTTCCGTTATTGTTGTGGGCCCTTC 'Ruppia_maritima_A' TTTCAGATGTAATTGAAGGCAAAGAGGGAAGATTTAGGGAGACTCTGCTTGGTAAACGAGTCGATTATTCGGGACGTTCCGTTATTGTTGTGGGCCCTTC 'Ruppia_polycarpa_B' TTTCAGATGTAATTGAAGGCAAAGAGGGAAGATTTAGGGAGACTCTGCTTGGTAAACGAGTCGATTATTCGGGACGTTCCGTTATTGTTGTGGGCCCTTC 'Ruppia_maritima_E' TTTCAGATGTAATTGAAGGCAAAGAGGGAAGATTTAGGGAGACTCTGCTTGGTAAACGAGTCGATTATTCGGGACGTTCCGTTATTGTTGTGGGCCCTTC 'Ruppia_polycarpa_A' TTTCAGATGTAATTGAAGGCAAAGAGGGAAGATTTAGGGAGACTCTGCTTGGTAAACGAGTCGATTATTCGGGACGTTCCGTTATTGTTGTGGGCCCTTC 'Ruppia_maritima_B' TTTCAGATGTAATTGAAGGCAAAGAGGGAAGATTTAGGGAGACTCTGCTTGGTAAACGAGTTGATTATTCGGGACGTTCCGTTATTGTTGTGGGCCCTTC 'Ruppia_maritima_C' TTTCAGATGTAATTGAAGGCAAAGAGGGAAGATTTAGGGAGACTCTGCTTGGTAAACGAGTTGATTATTCGGGACGTTCCGTTATTGTTGTGGGCCCTTC 'Ruppia_maritima_D' TTTCAGATGTAATTGAAGGCAAAGAGGGAAGATTTAGGGAGACTCTGCTTGGTAAACGAGTTGATTATTCGGGACGTTCCGTTATTGTTGTGGGCCCTTC 'Ruppia_maritima_G' TTTCAGATGTAATTGAAGGCAAAGAGGGAAGATTTAGGGAGACTCTGCTTGGTAAACGAGTCGATTATTCGGGACGTTCCGTTATTGTTGTGGGTCCTTC 'Ruppia_maritima_H' TTTCAGATGTAATTGAAGGCAAAGAGGGAAGATTTAGGGAGACTCTGCTTGGTAAACGAGTCGATTATTCGGGACGTTCCGTTATTGTTGTGGGCCCTTC 'Ruppia_cirrhosa_B' TTTCAGATGTAATTGAAGGCAAAGAGGGAAGATTTAGGGAGACTCTGCTTGGTAAACGAGTCGATTATTCGGGACGTTCCGTTATTGTTGTGGGCCCTTC 'Ruppia_maritima_L' TTTCAGATGTAATTGAAGGCAAAGAGGGAAGATTTAGGGAGACTCTGCTTGGTAAACGAGTCGATTATTCGGGACGTTCCGTTATTGTTGTGGGCCCTTC 'Ruppia_maritima_F' ACTTTCATTACATCAATGCGGATTACCTCGAGAAATAGCAATAGAGCTTTTCCAGACATTTGTAATTCGTGGTCTAATCAGACAACATGTTGCTTCTAAC 'Ruppia_maritima_A' ACTTTCATTACATCAATGCGGATTACCTCGAGAAATAGCAATAGAGCTTTTCCAGACATTTGTAATTCGTGGTCTAATCAGACAACATGTTGCTTCTAAC 'Ruppia_polycarpa_B' ACTTTCATTACATCAATGCGGATTACCTCGAGAAATAGCAATAGAGCTTTTCCAGACATTTGTAATTCGTGGTCTAATCAGACAACATGTTGCTTCTAAC 'Ruppia_maritima_E' ACTTTCATTACATCAATGCGGATTACCTCGAGAAATAGCAATAGAGCTTTTCCAGACATTTGTAATTCGTGGTCTAATCAGACAACATGTTGCTTCTAAC 'Ruppia_polycarpa_A' ACTTTCATTACATCAATGCGGATTACCTCGAGAAATAGCAATAGAGCTTTTCCAGACATTTGTAATTCGTGGTCTAATCAGACAACATGTTGCTTCTAAC 'Ruppia_maritima_B' ACTTTCATTACATCAATGCGGATTACCTCGAGAAATAGCAATAGAGCTTTTCCAGACATTTGTAATTCGTGGTCTAATCAGACAACATGTTGCTTCTAAC 'Ruppia_maritima_C' ACTTTCATTACATCAATGCGGATTACCTCGAGAAATAGCAATAGAGCTTTTCCAGACATTTGTAATTCGTGGTCTAATCAGACAACATGTTGCTTCTAAC 'Ruppia_maritima_D' ACTTTCATTACATCAATGCGGATTACCTCGAGAAATAGCAATAGAGCTTTTCCAGACATTTGTAATTCGTGGTCTAATCAGACAACATGTTGCTTCTAAC 'Ruppia_maritima_G' ACTTTCATTACATCAATGCGGATTACCTCGAGAAATAGCAATAGAGCTTTTCCAGACATTTGTAATTCGTGGTCTAATCAGACAACATGTTGCTTCTAAC 'Ruppia_maritima_H' ACTTTCATTACATCAATGCGGATTACCTCGAGAAATAGCAATAGAGCTTTTCCAGACATTTGTAATTCGTGGTCTAATCAGACAACATGTTGCTTCTAAC 'Ruppia_cirrhosa_B' ACTTTCATTACATCAATGCGGATTACCTCGAGAAATAGCAATAGAGCTTTTCCAGACATTTGTAATTCGTGGTCTAATCAGACAACATGTTGCTTCTAAC 'Ruppia_maritima_L' ACTTTCATTACATCAATGCGGATTACCTCGAGAAATAGCAATAGAGCTTTTCCAGACATTTGTAATTCGTGGTCTAATCAGACAACATGTTGCTTCTAAC 'Ruppia_maritima_F' ATAGGGATTGCTAAAAGTAAAATTCGCGAAAAAGAACGAATTGTATGGGAAATACTTCAAGAAGTTATGCAGGGCCATCCTGTATTGCTGAATAGAGCAC 'Ruppia_maritima_A' ATAGGGATTGCTAAAAGTAAAATTCGCGAAAAAGAACGGATTGTATGGGAAATACTTCAAGAAGTTATGCAGGGGCATCCTGTATTGCTGAATAGAGCAC 'Ruppia_polycarpa_B' ATAGGGATTGCTAAAAGTAAAATTCGCGAAAAAGAACGGATTGTATGGGAAATACTTCAAGAAGTTATGCAGGGGCATCCTGTATTGCTGAATAGAGCAC 'Ruppia_maritima_E' ATAGGGATTGCTAAAAGTAAAATTCGCGAAAAAGAACGAATTGTATGGGAAATACTTCAAGAAGTTATGCAGGGCCATCCTGTATTGCTGAATAGAGCAC 'Ruppia_polycarpa_A' ATAGGGATTGCTAAAAGTAAAATTCGCGAAAAAGAACGGATTGTATGGGAAATACTTCAAGAAGTTATGCAGGGCCATCCTGTATTGCTGAATAGAGCAC 'Ruppia_maritima_B' ATAGGGATTGCTAAAAGTAAAATTCGCGAAAAAGAACGGATTGTATGGGAAATACTTCAAGAAGTTATGCAGGGGCATCCTGTATTGCTGAATAGAGCAC 'Ruppia_maritima_C' ATAGGGATTGCTAAAAGTAAAATTCGCGAAAAAGAACGGATTGTATGGGAAATACTTCAAGAAGTTATGCAGGGGCATCCTGTATTGCTGAATAGAGCAC 'Ruppia_maritima_D' ATAGGGATTGCTAAAAGTAAAATTCGCGAAAAAGAACGGATTGTATGGGAAATACTTCAAGAAGTTATGCAGGGGCATCCTGTATTGCTGAATAGAGCAC 'Ruppia_maritima_G' ATAGGGATTGCTAAAAGTAAAATTCGCGAAAAAGAACGGATTGTATGGGAAATACTTCAAGAAGTTATGCAGGGCCATCCTGTATTGCTGAATAGAGCAC 'Ruppia_maritima_H' ATAGGGATTGCTAAAAGTAAAATTCGCGAAAAAGAACGAATTGTATGGGAAATACTTCAAGAAGTTATGCAGGGCCATCCTGTATTGCTGAATAGAGCAC 'Ruppia_cirrhosa_B' ATAGGGATTGCTAAAAGTAAAATTCGCGAAAAAGAACGAATTGTATGGGAAATACTTCAAGAAGTTATGCAGGGCCATCCTGTATTGCTGAATAGAGCAC 'Ruppia_maritima_L' ATAGGGATTGCTAAAAGCAAAATTCGCGAAAAAGAACGAATTGTATGGGAAATACTTCAAGAAGTTATGCAGGGCCATCCTGTATTGCTGAATAGAGCAC 'Ruppia_maritima_F' CCACCCTGCATAGATTAGGAATACAGGCATTTCAACCTATTTTAGTGGAGGGACGTGCTATTTGTTTACACCCATTAGTTTGTAAAGGCTTTAATGCAGA 'Ruppia_maritima_A' CCACCCTGCATAGATTAGGAATACAGGCATTTCAACCTATTTTAGTGGAGGGACGTGCTATTTGTTTACACCCATTAGTTTGTAAAGGCTTTAATGCAGA 'Ruppia_polycarpa_B' CCACCCTGCATAGATTAGGAATACAGGCATTTCAACCTATTTTAGTGGAGGGACGTGCTATTTGTTTACACCCATTAGTTTGTAAAGGCTTTAATGCAGA 'Ruppia_maritima_E' CCACCCTGCATAGATTAGGAATACAGGCATTTCAACCTATTTTAGTGGAGGGACGTGCTATTTGTTTACACCCATTAGTTTGTAAAGGCTTTAATGCAGA 'Ruppia_polycarpa_A' CCACCCTGCATAGATTAGGAATACAGGCATTTCAACCTATTTTAGTGGAGGGACGTGCTATTTGTTTACACCCATTAGTTTGTAAAGGCTTTAATGCAGA 'Ruppia_maritima_B' CCACCCTGCATAGATTAGGAATACAGGCATTTCAACCTATTTTAGTGGAGGGACGTGCTATTTGTTTACACCCATTAGTTTGTAAAGGCTTTAATGCAGA 'Ruppia_maritima_C' CCACCCTGCATAGATTAGGAATACAGGCATTTCAACCTATTTTAGTGGAGGGACGTGCTATTTGTTTACACCCATTAGTTTGTAAAGGCTTTAATGCAGA 'Ruppia_maritima_D' CCACCCTGCATAGATTAGGAATACAGGCATTTCAACCTATTTTAGTGGAGGGACGTGCTATTTGTTTACACCCATTAGTTTGTAAAGGCTTTAATGCAGA 'Ruppia_maritima_G' CCACCCTGCATAGATTAGGAATACAGGCATTTCAACCTATTTTAGTGGAGGGACGTGCTATTTGTTTACACCCATTAGTTTGTAAAGGCTTTAATGCAGA 'Ruppia_maritima_H' CCACCCTGCATAGATTAGGAATACAGGCATTTCAACCTATTTTAGTGGAGGGACGTGCTATTTGTTTACACCCATTAGTTTGTAAAGGCTTTAATGCAGA 'Ruppia_cirrhosa_B' CCACCCTGCATAGATTAGGAATACAGGCATTTCAACCTATTTTAGTGGAGGGACGTGCTATTTGTTTACACCCATTAGTTTGTAAAGGCTTTAATGCAGA 'Ruppia_maritima_L' CCACCCTGCATAGATTAGGAATACAGGCATTTCAACCTATTTTAGTGGAGGGACGTGCTATTTGTTTACACCCATTAGTTTGTAAAGGCTTTAATGCAGA 'Ruppia_maritima_F' CTTTGATGGGGATCAAATGGCTGTTCATGTACCTTTATCCTTGGAAGCTCAAGCCGAGGAAAAATCGAGCATATTGCAATAGTTTTTCGTAATGATTTTC 'Ruppia_maritima_A' CTTTGATGGGGATCAAATGGCTGTTCATGTACCTTTATCCTTGGAAGCTCAAGCCGAGGAAAAATCGAGCATATTGCAATAGTTTTTCGTAATGATTTTC 'Ruppia_polycarpa_B' CTTTGATGGGGATCAAATGGCTGTTCATGTACCTTTATCCTTGGAAGCTCAAGCCGAGGAAAAATCGAGCATATTGCAATAGTTTTTCGTAATGATTTTC 'Ruppia_maritima_E' CTTTGATGGGGATCAAATGGCTGTTCATGTACCTTTATCCTTGGAAGCTCAAGCCGAGGAAAAATCGAGCATATTGCAATAGTTTTTCGTAATGATTTTC 'Ruppia_polycarpa_A' CTTTGATGGGGATCAAATGGCTGTTCATGTACCTTTATCCTTGGAAGCTCAAGCCGAGGAAAAATCGAGCATATTGCAATAGTTTTTCGTAATGATTTTC 'Ruppia_maritima_B' CTTTGATGGGGATCAAATGGCTGTTCATGTACCTTTATCCTTGGAAGCTCAAGCCGAGGAAAAATCGAGCATATTGCAATAGTTTTTCGTAATGATTTTC 'Ruppia_maritima_C' CTTTGATGGGGATCAAATGGCTGTTCATGTACCTTTATCCTTGGAAGCTCAAGCCGAGGAAAAATCGAGCATATTGCAATAGTTTTTCGTAATGATTTTC 'Ruppia_maritima_D' CTTTGATGGGGATCAAATGGCTGTTCATGTACCTTTATCCTTGGAAGCTCAAGCCGAGGAAAAATCGAGCATATTGCAATAGTTTTTCGTAATGATTTTC 'Ruppia_maritima_G' CTTTGATGGGGATCAAATGGCTGTTCATGTACCTTTATCCTTGGAAGCTCAAGCCGAGGAAAAATCGAGCATATTGCAATAGTTTTTCGTAATGATTTTC 'Ruppia_maritima_H' CTTTGATGGGGATCAAATGGCTGTTCATGTACCTTTATCCTTGGAAGCTCAAGCCGAGGAAAAATCGAGCATATTGCAATAGTTTTTCGTAATGATTTTC 'Ruppia_cirrhosa_B' CTTTGATGGGGATCAAATGGCTGTTCATGTACCTTTATCCTTGGAAGCTCAAGCCGAGGAAAAATCGAGCATATTGCAATAGTTTTTCGTAATGATTTTC 'Ruppia_maritima_L' CTTTGATGGGGATCAAATGGCTGTTCATGTACCTTTATCCTTGGAAGCTCAAGCCGAGGAAAAATCGAGCATATTGCAATAGTTTTTCGTAATGATTTTC 'Ruppia_maritima_F' ATAAAACCCTACGATTGTTCAAGGATCCTTTGATGCATTATGCTAGATATCAAGGAAAATCCCTTCTGGCTTCAAAAGGAACTCATCTTATAATGAAGAA 'Ruppia_maritima_A' ATAAAACCCTACGATTGTTCAAGGATCCTTTCATGCATTATGCTAGATATCAAGGAAAATCCCTTCTGGCTTCAAAAGGAACTCATCTTATAATGAAGAA 'Ruppia_polycarpa_B' ATAAAACCCTACGATTGTTCAAGGATCCTTTCATGCATTATGCTAGATATCAAGGAAAATCCCTTCTGGCTTCAAAAGGAACTCATCTTATAATGAAGAA 'Ruppia_maritima_E' ATAAAACCCTACGATTGTTCAAGGATCCTTTGATGCATTATGCTAGATATCAAGGAAAATCCCTTCTGGCTTCAAAAGGAACTCATCTTATAATGAAGAA 'Ruppia_polycarpa_A' ATAAAACCCTACGATTGTTCAAGGATCCTTTCATGCATTATGCTAGATATCAAGGAAAATCCCTTCTGGCTTCAAAAGGAACTCATCTTATAATGAAGAA 'Ruppia_maritima_B' ATAAAACCCTACGATTGTTCAAGGATCCTTTCATGCATTATGCTAGATATCAAGGAAAATCCCTTCTGGCTTCAAAAGGAACTCATCTTATAATGAAGAA 'Ruppia_maritima_C' ATAAAACCCTACGATTGTTCAAGGATCCTTTCATGCATTATGCTAGATATCAAGGAAAATCCCTTCTGGCTTCAAAAGGAACTCATCTTATAATGAAGAA 'Ruppia_maritima_D' ATAAAACCCTACGATTGTTCAAGGATCCTTTCATGCATTATGCTAGATATCAAGGAAAATCCCTTCTGGCTTCAAAAGGAACTCATCTTATAATGAAGAA 'Ruppia_maritima_G' ATAAAACCCTACGATTGTTCAAGGATCCTTTCATGCATTATGCTAGATATCAAGGAAAATCCCTTCTGGCTTCAAAAGGAACTCATCTTATAATGAAGAA 'Ruppia_maritima_H' ATAAAACCCTACGATTGTTCAAGGATCCTTTGATGCATTATGCTAGATATCAAGGAAAATCCCTTCTGGCTTCAAAAGGAACTCATCTTATAATGAAGAA 'Ruppia_cirrhosa_B' ATAAAACCCTACGATTGTTCAAGGATCCTTTGATGCATTATGCTAGATATCAAGGAAAATCCCTTCTGGCTTCAAAAGGAACTCATCTTATAATGAAGAA 'Ruppia_maritima_L' ATAAAACCCTACGATTGTTCAAGGATCCTTTGATGCATTATGCTAGATATCAAGGAAAATCCCTTCTGGCTTCAAAAGGAACTCATCTTATAATGAAGAA 'Ruppia_maritima_F' ATGGAAATATCACCTTATTAATTTTTGGCAATGGAATTTTTATTTTTGGTCTCAACCATATAGGATTCATATAAAACAACTATTAAAAAATTCCTTCTAT 'Ruppia_maritima_A' ATGGAAATATCACCATATTAATTTTTGGCAATGGAATTTTTATTTTTGGTCTCAACCATATAGGATTCATATAAAACAACTATTAAAAAATTCTTTCTAT 'Ruppia_polycarpa_B' ATGGAAATATCACCATATTAATTTTTGGCAATGGAATTTTTATTTTTGGTCTCAACCATATAGGATTCATATAAAACAACTCTTAAAAAATTCTTTCTAT 'Ruppia_maritima_E' ATGGAAATATCACCTTATTAATTTTTGGCAATGGAATTTTTATTTTTGGTCTCAACCATATAGGATTCATATAAAACAACTATTAAAAAATTCCTTCTAT 'Ruppia_polycarpa_A' ATGGAAATATCACCTTATTAATTTTTGGCAATGGAATTTTTCTTTTTGGTCTCAACCATATAGGATTCATATAAAACAACTATTAAACAATTCCTTCTAT 'Ruppia_maritima_B' ATGGAAATATCACCATATTAATTTTTGGCAATGGAATTTTTATTTTTGGTCTCAACCATATAGGATTCATATAAAACAACTATTAAAAAATTCCTTCTAT 'Ruppia_maritima_C' ATGGAAATATCACCATATTAATTTTTGGCAATGGAATTTTTATTTTTGGTCTCAACCATATAGGATTCCTATAAAACAACTATTAAAAAATTCCTTCTAT 'Ruppia_maritima_D' ATGGAAATATCACCATATTAATTTTTGGCAATGGAATTTTTATTTTTGGTCTCAACCATATAGGATTCATATAAAACAACTATTAAAAAATTCCTTCTAT 'Ruppia_maritima_G' ATGGAAATATCACCTTATTAATTTTTTGCAATGGAATTTTTATTTTTGGTCTCAACCATATAGGATTCATATAAAACAACTATTAAAAAATTCCATCTAT 'Ruppia_maritima_H' ATGGAAATATCACCTTATTAATTTTTGGCAATGGAATTTTTATTTTTGGTCTCAACCATATAGGATTCATATAAAACAACTATTAAAAAATTCCTTCTAT 'Ruppia_cirrhosa_B' ATGGAAATATCACCTTATTAATTTTTGGCAATGGAATTTCTATTTTTGGTCTCAACCATATAGGATTCATATAAAACAACTATTAAAAAATTCCTTCTAT 'Ruppia_maritima_L' ATGGAAATATCACCTTATTAATTTTTGGCAATGGAATTTTTATTTTTGGTCTCAACCATATAGGATTCATATAAAACAACTATTAAAAAATTCCTTCTAT 'Ruppia_maritima_F' TTTTTGGGTTATTTTTCTAGTGTATTAATGAATCCTTTGACAGTAAAAAGTAAAATGCTAGAGTATTCTTTTATAATTGATACTGTTACTAATAAATTTG 'Ruppia_maritima_A' TTTTTGGGTTATTTTTCTAGTGTATTAATGAATCCTTTGACAGTAAAAAGTAAAATGCTAGAGTATTCTTTTATAATTGATACTGTTACTAATCAATTTG 'Ruppia_polycarpa_B' TTTTTGGGTTATTTTTCTAGTGTATTAATGAATCCTTTGACAGTAAAAAGTAAAATGCTAGAGTATTCTTTTATAATTGATACTGTTACTAATCAATTTG 'Ruppia_maritima_E' TTTTTGGGTTATTTTTCTAGTGTATTAATGAATCCTTTGACAGTAAAAAGTAAAATGCTAGAGTATTCTTTTATAATTGATACTGTTACTAATAAATTTG 'Ruppia_polycarpa_A' TTTTTGGGTTATTTTTCTAGTGTATTAATGAATCCTTTGACAGTAAAAAGTAAAATGCTAGAGTATTCTTTTATAATTGATACTGTTACTAATAAATTTG 'Ruppia_maritima_B' TTTTTGGGTTATTTTTCTAGTGTATTAATGAATCCTTTGACAGTAAAAAGTAAAATGCTAGAGTATTCTTTTATAATTGATACTTTTACTAATAAATTTG 'Ruppia_maritima_C' TTTTTGGGTTATTTTTCTAGTGTATTAATGAATCCTTTGACAGTAAAAAGTAAAATGCTAGAGTATTCTTTTATAATTGATACTTTTACTAATAAATTTG 'Ruppia_maritima_D' TTTTTGGGTTATTTTTCTAGTGTATTAATGAATCCTTTGACAGTAAAAAGTAAAATGCTAGAGTCTTCTTTTATAATTGATACTTTTACTAATAAATTTG 'Ruppia_maritima_G' TTTTTGGGTTATTTTTCTAGTGTATTAAGGAATCCTTTGACAGTAAAAAGTAAAATGCTAGAGTATTCTTTTATAATTGATACTGTTACTAATAAATTTG 'Ruppia_maritima_H' TTTTTGGGTTATTTTTCTAGTGTATTAATGAATCCTTTGACAGTAAAAAGTAAAATGCTAGAGTATTCTTTTATAATTGATACTTTTACTAATAAATTTG 'Ruppia_cirrhosa_B' TTTTTGGGTTATTTTTCTAGTGTATTAATGAATCCTTTGACAGTAAAAAGTAAAATGCTAGAGTATTCTTTTATAATTGATACTGTTACTAATAAATTTG 'Ruppia_maritima_L' TTTTTGGGTTATTTTTCTAGTGTATTAATGAATCCTTTGACAGTAAAAAGTAAAATGCTAGAGTATTCTTTTATAATTGATACTGTTACTAATAAATTTG 'Ruppia_maritima_F' ATACTCTAGTTCCGATTAGTCCTCTCATTGGATCTTTGTCTAAAGCCAAATTTTGTAATGTATCTGGGTATCCCATTAGTAAGCCAATTTGGACCGATTT 'Ruppia_maritima_A' ATACTATAGTTCCGATTAGTCCTCTCATTGGATCTTTGTCTAAAGCCAAATTTTGTAATGTATCTGGGTATCCCATTAGTAAGCCAATTTGGACCGATTT 'Ruppia_polycarpa_B' ATACTATAGTTCCGATTAGTCCTCTCATTGGATCTTTGTCTAAAGCCAAATTTTGTAATGTATCTGGGTATCCCATTAGTAAGCCAATTTGGACCGATTT 'Ruppia_maritima_E' ATACTCTAGTTCCGATTAGTCCTCTCATTGGATCTTTGTCTAAAGCCAAATTTTGTAATGTATCTGGGTATCCCATTAGTAAGCCAATTTGGACCGATTT 'Ruppia_polycarpa_A' ATACTCTAGTTCCAATTAGTCCTCTCATTGGATCTTTGTCTAAAGCCAAATTTTGTAATGTATCTGGGTATCCCATTAGTAAGCCAATTTGGACCGATTT 'Ruppia_maritima_B' ATACTATAGTTCCGATTAGTCCTCTCATTGGATCTTTGTCTAAAGCCAAATTTTGTAATGTATCTGGGTATCCCATTAGTAAGCCAATTTGGACTGATTT 'Ruppia_maritima_C' ATACTATAGTTCCGATTAGTCCTCTCATTGGATCTTTGTCTAAAGCCAAATTTTGTAATGTATCTGGGTATCCCATTAGTAAGCCAATTTGGACTGATTT 'Ruppia_maritima_D' ATACTATAGTTCCGATTAGTCCTCTCATTGGATCTTTGTCTAAAGCCAAATTTTGTAATGTATCTGGGTATCCCATTAGTAAGCCAATTTGGACTGATTT 'Ruppia_maritima_G' ATACTCTAGTTCCGATTAGTCCTCTCATTGGATCTTTGTCTAAAGCCAAATTTTGTAATGTATCTGGGTATCCCATTAGTAAGCCAATTTGGACCGATTT 'Ruppia_maritima_H' ATACTCTAGTTCCGATTAGTCCTCTCATTGGATCTTTGTCTAAAGCCAAATTTTGTAATGTATCTGGGTATCCCATTAGTAAGCCAATTTGGACCGATTT 'Ruppia_cirrhosa_B' ATACTCTAGTTCCGATTAGTCCTCTCATTGGATCTTTGTCTAAAGCCAAATTTTGTAATGTATCTGGGTATCCCATTAGTAAGCCAATTTGGACCGATTT 'Ruppia_maritima_L' ATACTCTAGTTCCGATTAGTCCTCTCATTGGATCTTTGTCTAAAGCCAAATTTTGTAATGTATCTGGGTATCCCATTAGTAAGCCAATTTGGACCGATTT 'Ruppia_maritima_F' ATCTGATTCTGATATTATTGATCGGTTTGGTCGTATATGTAGAAACCTTTCTCATTATCAAAGTGGATCCTCAAAAAAACATAGTTTGTATCGAATGAAA 'Ruppia_maritima_A' ATCTGATTCTGATATTATTGATCGGTTTGGTCGTATATGTAGAAACCTTTCTCATTATCAAAGTGGATCCTCAAAAAAACATAGTTTGTATCGAATGAAA 'Ruppia_polycarpa_B' ATCTGATTCTGATATTATTGATCGGTTTGGTCGTATATGTAGAAACCTTTCTCATTATCAAAGTGGATCCTCAAAAAAACATAGTTTGTATCGAATGAAA 'Ruppia_maritima_E' ATCTGATTCTGATATTATTGATCGGTTTGGTCGTATATGTAGAAACCTTTCTCATTATCAAAGTGGATCCTCAAAAAAACATAGTTTGTATCGAATGAAA 'Ruppia_polycarpa_A' ATCTGATTCTGATATTATTGATCGGTTTGGTCGTATATGTAGAAACCTTTCTCATTATCAAAGTGGATCCTCAAAAAAACATAGTTTGTATCGAATGAAA 'Ruppia_maritima_B' ATCTGATTCTGATATTATTGATCGGTTTGGTCGTATATGTAGAAACCTTTCTCATTATCAAAGTGGATCCTCAAAAAAACATAGTTTGTATCGAATGAAA 'Ruppia_maritima_C' ATCTGATTCTGATATTATTGATCGGTTTGGTCGTATATGTAGAAACCTTTCTCATTATCAAAGTGGATCCTCAAAAAAACATAGTTTGTATCGAATGAAA 'Ruppia_maritima_D' ATCTGATTCTGATATTATTGATCGGTTTGGTCGTATATGTAGAAACCTTTCTCATTATCAAAGTGGATCCTCAAAAAAACATAGTTTGTATCGAATGAAA 'Ruppia_maritima_G' ATCTGATTCTGATATTATTGATCGGTTTGGTCGTATATGTAGAAACCTTTCTCATTATCAAAGTGGATCCTCAAAAAAACATAGTTTGTATCGAATGAAA 'Ruppia_maritima_H' ATCTGATTCTGATATTATTGATCGGTTTGGTCGTATATGTAGAAACCTTTCTCATTATCAAAGTGGATCCTCAAAAAAACATAGTTTGTATCGAATGAAA 'Ruppia_cirrhosa_B' ATCTGATTCTGATATTATTGATCGGTTTGGTCGTATATGTAGAAACCTTTCTCATTATCAAAGTGGATCCTCAAAAAAACATAGTTTGTATCGAATGAAA 'Ruppia_maritima_L' ATCTGATTCTGATATTATTGATCGGTTTGGTCGTATATGTAGAAACCTTTCTCATTATCAAAGTGGATCCTCAAAAAAACATAGTTTGTATCGAATGAAA 'Ruppia_maritima_F' TATATACT 'Ruppia_maritima_A' TATATACT 'Ruppia_polycarpa_B' TATATACT 'Ruppia_maritima_E' TATATACT 'Ruppia_polycarpa_A' TATATACT 'Ruppia_maritima_B' TATATACT 'Ruppia_maritima_C' TATATACT 'Ruppia_maritima_D' TATATACT 'Ruppia_maritima_G' TATATACT 'Ruppia_maritima_H' TATATACT 'Ruppia_cirrhosa_B' TATATACT 'Ruppia_maritima_L' TATATACT ; END; BEGIN TREES; Title 'Trees from "Ruppia_ptDNA...tre"'; LINK Taxa = Taxa; TRANSLATE 1 'Ruppia_maritima_F', 2t 'Ruppia_maritima_A', 2 'Ruppia_polycarpa_B', 3 'Ruppia_maritima_E', 4 'Ruppia_polycarpa_A', 5 'Ruppia_maritima_B', 6 'Ruppia_maritima_C', 7 'Ruppia_maritima_D', 8 'Ruppia_maritima_G', 10t 'Ruppia_maritima_H', 11t 'Ruppia_cirrhosa_B', 9 'Ruppia_maritima_L'; TREE 'R. maritima_ptDNA_MP' = ((((1:0.0,11t:1.0,9:1.0):2.0,(3:0.0,10t:1.0):1.0):3.0,((2t:0.0,2:1.0):4.0,(5:0.0,6:1.0,7:1.0):3.0):4.0,8:4.0):3.0,4:4.0):0.0; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 2108; END; begin paup; delete 2 10 11 13 14; END; begin paup; outgroup 6; END; begin paup; set autoclose = yes warnreset = no increase = auto; set criterion = parsimony; hsearch; pset opt = acctran; roottrees outroot = monophyl; describetrees all / plot = phylogram brlens = yes; savetrees file = Ruppia_ptDNA.tre brlens = yes; contree all / strict = yes tcompress = yes treefile = RptDNAcontree.tre; bootstrap nrep = 1000 treefile = RptDNAbs.tre; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 2108; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 2108; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1338485502803; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 2776939889854815051; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 5512501390541364972; mqVersion 275; checksumv 0 3 2797555554 null getNumChars 2108 numChars 2108 getNumTaxa 12 numTaxa 12 short true bits 15 states 15 sumSquaresStatesOnly 618255.0 sumSquares 618255.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1366 689; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #2776939889854815051 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #2776939889854815051; getWindow; tell It; newAssistant #mesquite.lists.DefaultTaxaOrder.DefaultTaxaOrder; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1266 622; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.ibeam; endTell; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.ManageTrees.ManageTrees; tell It; showTrees 0 #mesquite.lists.TreesList.TreesList; tell It; setTreeBlock 1; getWindow; tell It; newAssistant #mesquite.lists.NumForTreeList.NumForTreeList; tell It; suppress; setValueTask #mesquite.trees.NumberOfTaxa.NumberOfTaxa; desuppress; endTell; newAssistant #mesquite.lists.TreeListRooted.TreeListRooted; newAssistant #mesquite.lists.TreeListPolys.TreeListPolys; newAssistant #mesquite.lists.TreeListPolyAssumption.TreeListPolyAssumption; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1266 622; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TreesList.TreesListWindow.ibeam; endTell; endTell; showWindow; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #2776939889854815051 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 907.1338480421216.996842776772016755; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1266 622; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle on; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 6; orientUp; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setTree '((((1:0.0,11:1.0,12:1.0):2.0,(4:0.0,10:1.0):1.0):3.0,((2:0.0,3:1.0):4.0,(6:0.0,7:1.0,8:1.0):3.0):4.0,9:4.0):3.0,5:4.0):0.0;'; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;