#NEXUS [written Fri Jun 01 16:54:11 CST 2012 by Mesquite version 2.75 (build 564) at YuIto-PC/10.226.153.225] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=18; TAXLABELS Ruppia_maritima_B Ruppia_polycarpa_B Ruppia_maritima_F_01 Ruppia_maritima_F_02 Ruppia_polycarpa_A Ruppia_maritima_C Ruppia_maritima_E Ruppia_maritima_A 'Ruppia maritima B''' 'Ruppia maritima B''''''' Ruppia_maritima_G_01 Ruppia_maritima_G_02 'Ruppia maritima B''''' Ruppia_maritima_J_02 Ruppia_maritima_L_01 Ruppia_cirrhosa_B_02 Ruppia_maritima_K_02 Ruppia_maritima_K_01 ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=1050; FORMAT DATATYPE = DNA INTERLEAVE GAP = - MISSING = -; MATRIX Ruppia_maritima_B CGTTTACAGGCTTTGCCGGGTGGGGATATTAAGTTCCTGTGTGACACGGTTGTTGACCATGTTAGGGAGCTCACTGGATATGACAGGGTTATGGTGTATA Ruppia_polycarpa_B CGTTTACAGGCTTTGCCGGGTGGGGATATTAAGTTTCTGTGTGACACGGTTGTTGACCATGTTAGGGAGCTCACTGGATATGACAGGGTTATGGTGTATA Ruppia_maritima_F_01 CGTTTACAGGCTTTGCCGGGTGGGGATATTAAGTTTCTGTGTGACACGGTTGTTGACCATGTTAGGGAGCTCACTGGATATGACAGGGTTATGGTGTACA Ruppia_maritima_F_02 CGTTTACAGGCTTTGCCGGGTGGGGATATTAAGTTTCTGTGTGACACGGTTGTTGACCATGTTAGGGAGCTCACTGGATATGATAGGGTTATGGTGTATA Ruppia_polycarpa_A CGTTTACAGGCTTTGCCGGGTGGGGATATTAAGTTTCTGTGTGACACTGTTGTTGACCATGTTAGGGAGCTCACTGGGTATGACAGGGTTATGGTGTACA Ruppia_maritima_C CGTTTACAGGCTTTGCCGGGTGGGGATATTAAGTTTCTGTGTGACACGGTTGTTGACCATGTTAGGGAGCTCACTGGATATGATAGGGTTATGGTGTATA Ruppia_maritima_E CGTTTACAGGCTTTGCCGGGTGGGGATATTAAGTTTCTGTGTGACACGGTTGTTGACCATGTTAGGGAGCTCACTGGATATGACAGGGTTATGGTGTACA Ruppia_maritima_A CGTTTACAGGCTTTGCCGGGTGGGGATATTAAGTTTCTGTGTGACACGGTTGTTGACCATGTTAGGGAGCTCACTGGATATGACAGGGTTATGGTGTACA 'Ruppia maritima B''' CGTTTACAGGCTTTGCCGGGTGGGGATATTAAGTTCCTGTGTGACACGGTTGTTGACCATGTTAGGGAGCTCACTGGATATGACAGGGTTATGGTGTATA 'Ruppia maritima B''''''' CGTTTACAGGCTTTGCCGGGTGGGGATATTAAGTTTCTGTGTGACACGGTTGTTGACCATGTTAGGGAGCTCACTGGATATGATAGGGTTATGGTGTATA Ruppia_maritima_G_01 CGTTTACAGGCTTTGCCGGGTGGGGATATTAAGTTTTTGTGTGACACGGTTGTTGACCATGTTAGGGAGCTCACTGGATATGACAGGGTTATGGTGTATA Ruppia_maritima_G_02 CGTTTACAGGCTTTGCCGGGTGGGGATATTAAGTTTCTGTGTGACACGGTTGTTGACCATGTTAGGGAGCTCACTGGATATGACAGGGTTATGGTGTATA 'Ruppia maritima B''''' CGTTTACAGGCTTTGCCGGGTGGGGATATTAAGTTTCTGTGTGACACGGTTGTTGACCATGTTAGGGAGCTCACTGGATATGACAGGGTTATGGTGTATA Ruppia_maritima_J_02 CGTTTACAGGCTTTGCCGGGTGGGGATATTAAGTTTCTGTGTGACACGGTTGTTGACCATGTTAGGGAGCTCACTGGATATGACAGGGTTATGGTGTACA Ruppia_maritima_L_01 CGTTTACAGGCTTTGCCGGGTGGGGATATTAAGTTTCTGTGTGACACGGTTGTTGACCATGTTAGGGAGCTCACTGGATATGACAGGGTTATGGTGTACA Ruppia_cirrhosa_B_02 CGTTTACAGGCTTTGCCGGGTGGGGATATTAAGTTTCTGTGTGACACGGTTGTTGACCATGTTAGGGAGCTCACTGGATATGACAGGGTTATGGTGTACA Ruppia_maritima_K_02 CGTTTACAGGCTTTGCCGGGTGGGGATATTAAGTTTCTGTGTGACACGGTTGTTGACCATGTTAGGGAGCTCACTGGATATGACAGGGTTATGGTGTATA Ruppia_maritima_K_01 CGTTTACAGGCTTTGCCGGGTGGGGATATTAAGTTTCTGTGTGACACGGTTGTTGACCATGTTAGGGAGCTCACTGGATATGACAGGGTTATGGTGTACA Ruppia_maritima_B AATTCCATGAGGATGAGCATGGGGAAGTTCTCGCCGAGAGTAAAAGAAGTGACTTGGAACCCTATATAGGTCTCCATTACCCTGCCACAGACATACCCCA Ruppia_polycarpa_B AATTCCATGAGGATGAGCATGGGGAAGTTCTCGCCGAGAGTAAAAGAGGTGACTTGGAACCCTATATAGGTCTCCATTACCCTGCCACAGACATACCCCA Ruppia_maritima_F_01 AGTTCCATGAGGATGAGCATGGGGAAGTTCTCGCCGAGAGTAAAAGAAGCGACTTGGAACCTTATATAGGTCTTCACTACCCTGCCACAGATATACCCCG Ruppia_maritima_F_02 AATTCCATGAGGATGAGCATGGGGAAGTTCTCGCCGAGAGTAAAAGAAGTGACTTGGAACCCTATATAGGTCTCCATTACCCTGCCACAGACATACCCCA Ruppia_polycarpa_A AGTTCCATGAGGATGAGCATGGGGAAGTTCTTGCTGAGAGTAAAAGAAGTGACTTGGAACCTTACATAGGTCTCCATTACCCTGCCACAGACATACCCCA Ruppia_maritima_C AATTCCATGAGGATGAGCATGGGGAAGTTCTCGCCGAGAGTAAAAGAAGTGACTTGGAACCCTATATAGGTCTCCATTACCCTGCCACGGACATACCCCA Ruppia_maritima_E AGTTCCATGAGGATGAGCATGGGGAAGTTCTCGCCGAGAGTAAAAGAAGCGACTTGGAACCTTATATAGGTCTTCACTACCCTGCCACAGATATACCCCA Ruppia_maritima_A AATTCCACGAGGATGAGCATGGGGAAGTTCTCGCCGAGAGTAAAAGAGGTGACTTGGAACCCTATTTAGGTCTCCATTACCCTGCCACAGACATACCCCA 'Ruppia maritima B''' AATTCCATGAGGATGAGCATGGGGAAGTTCTCGCCGAGAGTAAAAGAAGTGACTTGGAACCCTATATAGGTCTCCATTACCCTGCCACAGACATACCCCA 'Ruppia maritima B''''''' AATTCCATGAGGATGAGCATGGGGAAGTTCTCTCCGAGAGTAAAAGAAGTGACTTGGAACCCTATATAGGTCTCCATTACCCTGCCACGGACATACCCCA Ruppia_maritima_G_01 AGTTCCATGAGGATGAGCATGGGGAAGTTCTGGCCGAGAGTAAAAGAAATGACTTGGAACCTTATATAGGTCTCCATTACCCTGCCACAGACATACCCCA Ruppia_maritima_G_02 AATTCCATGAGGATGAGCATGGGGAAGTTCTCGCCGAGAGTAAAAGAGGTGACTTGGAACCCTATATAGGTCTCCATTACCCTGCCACAGACATACCCCA 'Ruppia maritima B''''' AATTCCATGAGGATGAGCATGGGGAAGTTCTCGCCGAGAGTAAAAGAAGTGACTTGGAACCCTATATAGGTCTCCATTACCCTGCCACAGACATACCCCA Ruppia_maritima_J_02 AGTTCCATGAGGATGAGCATGGGGAAGTTCTCGCCGAGAGTAAAAGAAGCGACTTGGAACCTTATATAGGTCTTCACTACCCTGCCACAGATATACCCCA Ruppia_maritima_L_01 AGTTCCATGAGGATGAGCATGGGGAAGTTCTCGCCGAGAGTAAAAGAAGCGACTTGGAACCTTATATAGGTCTTCACTACCCTGCCACAGATATACCCCA Ruppia_cirrhosa_B_02 AGTTCCATGAGGATGAGCATGGGGAAGTTCTCGCCGAGAGTAAAAGAAGCGACTTGGAACCTTATATAGGTCTTCACTACCCTGCCACAGATATACCCCA Ruppia_maritima_K_02 AATTCCATGAGGATGAGCATGGGGAAGTTCTCGCCGAGAGTAAAAGAAGTGACTTGGAACCCTATATAGGTCTCCATTACCCTGCCACAGACATACCCCA Ruppia_maritima_K_01 AGTTCCATGAGGATGAGCATGGGGAAGTTCTCGCCGAGAGTAAAAGAAGCGACTTGGAACCTTATATAGGTCTTCACTACCCTGCCACAGATATACCCCA Ruppia_maritima_B AGCCTCAAGGTTCTTGTTTAAACAGAACAGAGTTAGGATGATAGCTGACTGTCGTGCAACTCCAGTTAGCATGATACAAGATGAGAACCTGATGCAGCCG Ruppia_polycarpa_B AGCCTCAAGGTTCTTGTTTAAACAGAACAGAGTTAGGATGATAGCTGACTGTCGTGCAACTCCTGTTAGCATGATACAAGATGAGAACCTGATGCAGCCG Ruppia_maritima_F_01 AGCCTCAAGGTTCTTGTTTAAACAGAACAGAGTTAGAATGATAGCTGACTGTCGTGCAACGCCTGTTAGCATGATACAAGATGAGAACCTGATGCAGCCG Ruppia_maritima_F_02 AGCCTCAAGGTTCTTGTTTAAACAGAACAGAGTTAGGATGATAGCTGACTGTCGTGCAACTGCAGTTAGCATGATACAAGATGAGAACCTGATGCAGCCG Ruppia_polycarpa_A AGCCTCAAGGTTCTTGTTTAAACAGAACAGAGTTAGGATGATAGCTGACTGTCGTGCAACTCCTGTTAGCATGATACAAGATGAGAACCTGATGCAGCCA Ruppia_maritima_C AGCCTCAAGGTTCTTGTTTAAACAGAACAGAGTTAGGATGATAGCTGACTGTCGTGCAACTCCAGTTAGCATGATACAAGATGAGAACCTGATGCAGCCG Ruppia_maritima_E AGCCTCAAGGTTCTTGTTTAAACAGAACAGAGTTAGAATGATAGCTGACTGTCATGCAACGCCTGTTAGCATGATACAAGATGAGAACCTGATGCAGCCG Ruppia_maritima_A AGCCTCAAGGTTCTTGTTTAAACAGAACAGAGTTAGGATGATAGCTGACTGTCGTGCAACTCCTGTTAGCATGATACAAGATGAGAACCTGATGCAGCCG 'Ruppia maritima B''' AGCCTCAAGGTTCTTGTTTAAACAGAACAGAGTTAGGATGATAGCTGACTGTCGTGCAACTCCAGTTAGCATGATACAAGATGAGAACCTGATGCAGCCG 'Ruppia maritima B''''''' AGCCTCAAGGTTCTTGTTTAAACAGAACAGAGTTAGGATGATAGCTGACTGTCGTGCAACTCCAGTTAGCATGATACAAGATGAGAACCTGATGCAGCCG Ruppia_maritima_G_01 AGCCTCAAGGTTCTTGTTTAAACAGAACAGAGTTAGGATGATAGCTGACTGCCATGCAACTCCTGTTAGCATGATACAAGATGAGAACCTGATGCAGCCG Ruppia_maritima_G_02 AGCCTCAAGGTTCTTGTTTAAACAGAACAGAGTTAGGATGATAGCTGACTGTCGTGCAACTCCTGTTAGCATGATACAAGATGAGAACCTGATGCAGCCG 'Ruppia maritima B''''' AGCCTCAAGGTTCTTGTTTAAACAGAACAGAGTTAGGATGATAGCTGACTGTCGTGCAACTCCAGTTAGCATGATACAAGATGAGAACCTGATGCAGCCG Ruppia_maritima_J_02 AGCCTCAAGGTTCTTGTTTAAACAGAACAGAGTTAGAATGATAGCTGACTGTCATGCAACGCCTGTTAGCATGATACAAGATGAGAACCTGATGCAGCCG Ruppia_maritima_L_01 AGCCTCAAGGTTCTTGTTTAAACAGAACAGAGTTAGAATGATAGCTGACTGTCGTGCAACGCCTGTTAGCATGATACAAGATGAGAACCTGATGCAGCCG Ruppia_cirrhosa_B_02 AGCCTCAAGGTTCTTGTTTAAACAGAACAGAGTTAGAATGATAGCTGACTGTCGTGCAACGCCTGTTAGCATGATACAAGATGAGAACCTGATGCAGCCG Ruppia_maritima_K_02 AGCCTCAAGGTTCTTGTTTAAACAGAACAGAGTTAGGATGATAGCTGACTGTCGTGCAACTGCAGTTAGCATGATACAAGATGAGAACCTGATGCAGCCG Ruppia_maritima_K_01 AGCCTCAAGGTTCTTGTTTAAACAGAACAGAGTTAGAATGATAGCTGACTGTCGTGCAACGCCTGTTAGCATGATACAAGATGAGAACCTGATGCAGCCG Ruppia_maritima_B CTTTGCCTTGTAGGATCCACACTACGAGCTCCTCATGGCTGCCATGCACAATACATGGCTAACATGGGCTCAATTGCTTCTCTTGTCATGGCTGTTATCA Ruppia_polycarpa_B CTTTGCCTTGTAGGATCCACACTACGAGCTCCTCATGGCTGCCATGCGCAATACATGGCTAACATGGGCTCAATTGCTTCTCTTGTCATGGCTGTTATCA Ruppia_maritima_F_01 CTTTGCCTTGTAGGATCCACACTACGAGCTCCTCATGGATGCCATGCGCAATACATGGCTAACATGGGCTCAGTTGCTTCTCTTGTCATGGCTGCTATCA Ruppia_maritima_F_02 CTTTGCCTTGTAGGATCCACACTACGAGCTCCTCATGGCTGCCATGCACAATACATGGCTAACATGGGCTCAATTGCTTCTCTTGTCATGGCTGTTATCA Ruppia_polycarpa_A CTTTGCCTTGTAGGATCCACACTACGTGCTCCTCATGGCTGCCATGCACAATACATGGCTAACATGGGCTCAGTTGCTTCTCTTGTCATGGCTGTTATCA Ruppia_maritima_C CTTTGCCTTGTAGGATCCACACTACGAGCTCCTCATGGCTGCCATGCACAATACATGGCTAACATGGGCTCAATTGCTTCTCTTGTCATGGCTGTTATCA Ruppia_maritima_E CTTTGCCTTGTAGGATCCACACTACGAGCTCCTCATGGATGCCATGCGCAATACATGGCTAACATGGGTTCAGTTGCTTCTCTTGTCATGGCTGTTATCA Ruppia_maritima_A CTTTGCCTTGTAGGATCCACATTACGAGCTCCTCATGGCTGCCATGCGCAATACATGGCTAACATGGGCTCAATTGCTTCTCTTGTCATGGCTGTTATCA 'Ruppia maritima B''' CTTTGCCTTGTAGGATCCACACTACGAGCTCCTCATGGCTGCCATGCACAATACATGGCTAACATGGGCTCAATTGCTTCTCTTGTCATGGCTGTTATCA 'Ruppia maritima B''''''' CTTTGCCTTGTAGGATCCACACTACGAGCTCCTCATGGCTGCCATGCACAATACATGGCTAACATGGGCTCAATTGCTTCTCTTGTCATGGCTGTTATCA Ruppia_maritima_G_01 CTTTGCCTTGTAGGATCCACACTAAGAGCTCCTCATGGCTGCCATGCGCAATACATGGCTAACATGGGCTCAGTTGCTTCTCTTGTCATGGCTGTTATCA Ruppia_maritima_G_02 CTTTGCCTTGTAGGATCCACACTACGAGCTCCTCATGGCTGCCATGCGCAATACATGGCTAACATGGGCTCAATTGCTTCTCTTGTCATGGCTGTTATCA 'Ruppia maritima B''''' CTTTGCCTTGTAGGATCCACACTACGAGCTCCTCATGGCTGCCATGCACAATACATGGCTAACATGGGCTCAATTGCTTCTCTTGTCATGGCTGTTATCA Ruppia_maritima_J_02 CTTTGCCTTGTAGGATCCACACTACGAGCTCCTCATGGATGCCATGCGCAATACATGGCTAACATGGGTTCAGTTGCTTCTCTTGTCATGGCTGTTATCA Ruppia_maritima_L_01 CTTTGCCTTGTAGGATCCACACTACGAGCTCCTCATGGATGCCATGCGCAATACATGGCTAACATGGGCTCAGTTGCTTCTCTTGTCATGGCTGTTATCA Ruppia_cirrhosa_B_02 CTTTGCCTTGTAGGATCCACACTACGAGCTCCTCATGGATGCCATGCGCAATACATGGCTAACATGGGCTCAGTTGCTTCTCTTGTCATGGCTGTTATCA Ruppia_maritima_K_02 CTTTGCCTTGTAGGATCCACACTACGAGCTCCTCATGGCTGCCATGCACAATACATGGCTAACATGGGCTCAATTGCTTCTCTTGTCATGGCTGTTATCA Ruppia_maritima_K_01 CTTTGCCTTGTAGGATCCACACTACGAGCTCCTCATGGATGCCATGCGCAATACATGGCTAACATGGGCTCAGTTGCTTCTCTTGTCATGGCTGTTATCA Ruppia_maritima_B TCAATGGGGGTGAAGAAGACGGCACAAGGAACTCTATGAAGCTATGGGGCCTTGTTGTTTGCCACCATACTTCTCCCAGATGCATTCCATTTCCATTGCG Ruppia_polycarpa_B TCAATGGGGGTGAAGAAGACGGCACAAGGAACTCTATGAAGCTATGGGGCCTTGTTGTTTGCCACCATACTTCTCCCAGATGCATTCCATTTCCATTGCG Ruppia_maritima_F_01 TCAATGGGGGCGAAGAAGACGGCACAAGGAACTCTATGAAGCTATGGGGCCTTGTTGTTTGCCACCATACTTCTCCCAGATGCATTCCATTTCCATTGCG Ruppia_maritima_F_02 TCAATGGGGGTGAAGAAGACGGCACAAGGAACTCTATGAAGCTATGGGGCCTTGTTGTTTGCCACCATACTTCTCCCAGATGCATTCCATTTCCATTGCG Ruppia_polycarpa_A TTAATGGGGGTGAAGAAGATGGCACACGGAACTCTATGAAGCTATGGGGCCTTGTTGTTTGCCACCATACTTCTCCCAGATGCATTCCATTTCCATTGCG Ruppia_maritima_C TCAATGGGGGTGAAGAAGACGGCACAAGGAACTCTATGAAGCTATGGGGCCTTGTTGTTTGCCACCATACTTCTCCCAGATGCATTCCATTTCCATTGCG Ruppia_maritima_E TCAATAGGGGCGAAGAAGACGGCACAAGGAACTCTATGAAGCTATGGGGCCTTGTTGTTTGCCACCATACTTCTCCCAGATGCATTCCATTTCCATTGCG Ruppia_maritima_A TCAATGGGGGTGAAGAAGACGGCACAAGGAACTCTATGAAGCTATGGGGCCTTGTTGTTTGCCACCATACTTCTCCCAGATGCATTCCATATCCATTGCG 'Ruppia maritima B''' TCAATGGGGGTGAAGAAGACGGCACAAGGAACTCTATGAAGCTATGGGGCCTTGTTGTTTGCCACCATACTTCTCCCAGATGCATTCCATTTCCATTGCG 'Ruppia maritima B''''''' TCAATGGGGGTGAAGAAGACGGCACAAGGAACTCTATGAAGCTATGGGGCCTTGTTGTTTGCCACCATACTTCTCCCAGATGCATTCCATTTCCATTGCG Ruppia_maritima_G_01 TCAATGGGGGCGAAGAAGACGGCACAAGGAACTCTATGAAGCTATGGGGCCTTGTTGTTTGCCACCATACTTCTCCCAGATGCATTCCATTTCCACTGCG Ruppia_maritima_G_02 TCAATGGGGGTGAAGAAGACGGCACAAGGAACTTTATGAAGCTATGGGGCCTTGTTGTTTGCCACCATACTTCTCCCAGATGCATTCCATTTCCACTGCG 'Ruppia maritima B''''' TCAATGGGGGTGAAGAAGACGGCACAAGGAACTCTATGAAGCTATGGGGCCTTGTTGTTTGCCACCATACTTCTCCCAGATGCATTCCATTTCCATTGCG Ruppia_maritima_J_02 TCAATAGGGGCGAAGAAGACGGCACAAGGAACTCTATGAAGCTATGGGGCCTTGTTGTTTGCCACCATACTTCTCCCAGATGCATTCCATTTCCATTGCG Ruppia_maritima_L_01 TCAATGGGGGCGAAGAAGACGGCACAAGGAACTCTATGAAGCTATGGGGCCTTGTTGTTTGCCACCATACTTCTCCCAGATGCATTCCATTTCCATTGCG Ruppia_cirrhosa_B_02 TCAATGGGGGCGAAGAAGACGGCACAAGGAACTCTATGAAGCTATGGGGCCTTGTTGTTTGCCACCATACTTCTCCCAGATGCATTCCATTTCCATTGCG Ruppia_maritima_K_02 TCAATGGGGGTGAAGAAGACGGCACAAGGAACTCTATGAAGCTATGGGGCCTTGTTGTTTGCCACCATACTTCTCCCAGATGCATTCCATTTCCATTGCG Ruppia_maritima_K_01 TCAATGGGGGCGAAGAAGACGGCACAAGGAACTCTATGAAGCTATGGGGCCTTGTTGTTTGCCACCATACTTCTCCCAGATGCATTCCATTTCCATTGCG Ruppia_maritima_B CTATGCCTGTGAGTTCCTCATGCAGGCCCTAGGCCTTCAGCTTAATATGGAAGTTCAGTTGGCTGCCCAGATGTCTGAAAAGCACATATTGAGAACTCAA Ruppia_polycarpa_B CTATGCCTGTGAGTTCCTCATGCAGGCTCTAGGCCTTCAGCTTAATATGGAAGTTCAGTTGGCTGCCCAGATGTCTGAAAAGCACATATTGAGAACTCAA Ruppia_maritima_F_01 CTATGCCTGTGAGTTCCTCATGCAGGCTCTAGGCCTTCAGCTTAATATGGAAGTTCAGTTGGCTGCCCAGATGTCTGAAAAGCACATATTAAGAACTCAA Ruppia_maritima_F_02 CTATGCCTGTGAGTTCCTCATGCAGGCCCTAGGCCTTCAGCTTAATATGGAAGTTCAGTTGGCTGCCCAGATGTCTGAAAAGCACATATTGAGAACTCAA Ruppia_polycarpa_A CTATGCCTGTGAGTTCCTAATGCAGGCTCTAGGCCTCCAGCTTAATATGGAAGTTCAGTTGGCTGCCCAGATGTCTGAAAAGCACATATTGAGAACTCAA Ruppia_maritima_C CTATGCCTGTGAGTTCCTCATGCAGGCCCTAGGCCTTCAGCTTAATATGGAAGTTCAGTTGGCTGCCCAGATGTCTGAAAAGCACATATTGAGAACTCAA Ruppia_maritima_E ATATGCCTGTGAGTTCCTCATGCAGGCTCTAGGCCTTCAGCTTAATATGGAAGTTCAGTTGGCTGCCCAGATGTCTGAAAAGCACATATTAAGAACTCAA Ruppia_maritima_A CTATGCCTGTGAGTTCCTCATGCAGGCTCTAGGCCTTCAGCTAAATATGGAAGTTCAGTTGGCTGCCCAGATGTCTGAAAAGCACATATTGAGAACTCAA 'Ruppia maritima B''' CTATGCCTGTGAGTTCCTCATGCAGGCCCTAGGCCTTCAGCTTAATATGGAAGTTCAGTTGGCTGCCCAGATGTCTGAAAAGCACATATTGAGAACTCAA 'Ruppia maritima B''''''' CTATGCCTGTGAGTTCCTCATGCAGGCCCTAGGCCTTCAGCTTAATATGGAAGTTCAGTTGGCTGCCCAGATGTCTGAAAAGCACATATTGAGAACTCAA Ruppia_maritima_G_01 CTATGCCTGTGAGTTCCTCATGCAGGCTTTAGGCCTTCAGCTTAATATGGAAGTTCAGTTGGCTGCCCAGATGTCCGAAAAGCACATATTAAGAACTCAA Ruppia_maritima_G_02 CTATGCCTGTGAGTTCTTCATGCAGGCTCTAGGCCTTCAGCTTAATATGGAAGTTCAGTTGGCTGCCCAGATGTCTGAAAAGCACATATTGAGAACTCAA 'Ruppia maritima B''''' CTATGCCTGTGAGTTCCTCATGCAGGCCCTAGGCCTTCAGCTTAATATGGAAGTTCAGTTGGCTGCCCAGATGTCTGAAAAGCACATATTGAGAACTCAA Ruppia_maritima_J_02 ATATGCCTGTGAGTTCCTCATGCAGGCTCTAGGCCTTCAGCTTAATATGGAAGTTCAGTTGGCTGCCCAGATGTCTGAAAAGCACATATTAAGAACTCAA Ruppia_maritima_L_01 CTATGCCTGTGAGTTCCTCATGCAGGCTCTAGGCCTTCAGCTTAATATGGAAGTTCAGTTGGCTGCCCAGATGTCTGAAAAGCACATATTAAGAACTCAA Ruppia_cirrhosa_B_02 CTATGCCTGTGAGTTCCTCATGCAGGCTCTAGGCCTTCAGCTTAATATGGAAGTTCAGTTGGCTGCCCAGATGTCTGAAAAGCACATATTAAGAACTCAA Ruppia_maritima_K_02 CTATGCCTGTGAGTTCCTCATGCAGGCCCTAGGCCTTCAGCTTAATATGGAAGTTCAGTTGGCTGCCCAGATGTCTGAAAAGCACATATTGAGAACTCAA Ruppia_maritima_K_01 CTATGCCTGTGAGTTCCTCATGCAGGCTCTAGGCCTTCAGCTTAATATGGAAGTTCAGTTGGCTGCCCAGATGTCTGAAAAGCACATATTAAGAACTCAA Ruppia_maritima_B ACCCTTCTATGTGATATGCTTCTTAGGGATTCTCCTACTGGAATTGTTACACAAAGTCCTAGTATAATGGACCTTGTGAAGTGTGATGGCGCGGCACTCT Ruppia_polycarpa_B ACCCTTCTATGTGATATGCTTCTTAGGGATTCTCCTACTGGAATTGTTACACAAAGTCCTAGTATAATGGACCTTGTGAAGTGTGATGGTGCGGCACTCT Ruppia_maritima_F_01 ACCCTTCTATGTGATATGCTTCTTCGGGATTCTCCTACTGGAATTGTTACACAAAATCCTAGTATAATGGACCTTGTGAAGTGTGATGGTGCAGCGCTCT Ruppia_maritima_F_02 ACCCTTCTATGTGATATGCTTCTTAGGGATTCTCCTACTGGAATTGTTACACAAAGTCCTAGTATAATGGACCTTGTGAAGTGTGATGGTGCGGCACTCT Ruppia_polycarpa_A ACCCTTCTATGTGATATGCTTCTTAGGGATTCTCCTACTGGAATTGTTACACAAAGTCCTAGTATAATGGACCTTGTGAAGTGTGATGGCGCGGCGCTCT Ruppia_maritima_C ACCCTTCTATGTGATATGCTTCTTAGGGATTCTCCTACTGGAATTGTTACACAAAGTCCTAGTATAATGGACCTTGTGAAGTGTGATGGTGCGGCACTCT Ruppia_maritima_E ACCCTTCTATGTGATATGCTTCTTCGGGATTCTCCTACTGGAATTGTTACACAAAGTCCTAGTATAATGGACCTTGTGAAGTGTGATGGTGCAGCGCTCT Ruppia_maritima_A ACCCTTCTATGTGATATGCTTCTTAGGGATTCTCCTACTGGAATTGTTACACAAAGTCCTAGTATAATGGACCTTGTGAAGTGTGATGGTGCGGCACTCT 'Ruppia maritima B''' ACCCTTCTATGTGATATGCTTCTTAGGGATTCTCCTACTGGAATTGTTACACAAAGTCCTAGTATAATGGACCTTGTGAAGTGTGATGGCGCGGCACTCT 'Ruppia maritima B''''''' ACCCTTCTATGTGATATGCTTCTTAGGGATTCTCCTACTGGAATTGTTACACAAAGTCCTAGTATAATGGACCTTGTGAAGTGTGATGGTGCGGCACTCT Ruppia_maritima_G_01 ACCCTTCTATGTGATATGCTTCTTCGGGATTCTCCTATTGGAATTGTTACACAAAGTCCTAGTATAATGGACCTTGTGAAGTGTGATGGCGCGGCACTCT Ruppia_maritima_G_02 ACCCTTCTATGTGATATGCTTCTTAGGGATTCTCCTACTGGAATTGTTACACAAAGTCCTAGTATAATGGACCTTGTGAAGTGTGATGGTGCGGCACTCT 'Ruppia maritima B''''' ACCCTTCTATGTGATATGCTTCTTAGGGATTCTCCTACTGGAATTGTTACACAAAGTCCTAGTATAATGGACCTTGTGAAGTGTGATGGCGCGGCACTCT Ruppia_maritima_J_02 ACCCTTCTATGTGATATGCTTCTTCGGGATTCTCCTACTGGAATTGTTACACAAAGTCCTAGTATAATGGACCTTGTGAAGTGTGATGGTGCAGCGCTCT Ruppia_maritima_L_01 ACCCTTCTATGTGATATGCTTCTTCGGGATTCTCCTACTGGAATTGTTACACAAAGTCCTAGTATAATGGACCTTGTGAAGTGTGATGGTGCAGCGCTCT Ruppia_cirrhosa_B_02 ACCCTTCTATGTGATATGCTTCTTCGGGATTCTCCTACTGGAATTGTTACACAAAGTCCTAGTATAATGGACCTTGTGAAGTGTGATGGTGCAGCGCTCT Ruppia_maritima_K_02 ACCCTTCTATGTGATATGCTTCTTAGGGATTCTCCTACTGGAATTGTTACACAAAGTCCTAGTATAATGGACCTTGTGAAGTGTGATGGTGCGGCACTCT Ruppia_maritima_K_01 ACCCTTCTATGTGATATGCTTCTTCGGGATTCTCCTACTGGAATTGTTACACAAAGTCCTAGTATAATGGACCTTGTGAAGTGTGATGGTGCAGCGCTCT Ruppia_maritima_B ATTACCATGGTAAGTATTGGCCACTCGGTGTTGCCCCCTCCGAGGAAAAGATTAAAGATATTATCGGCTGGTTATTGGCAACTCATGGAGACTCCACAGG Ruppia_polycarpa_B ATTACCATGGTAAGTATTGGCCACTCGGTGTTGCCCCCTCCGAGGAAAAGATTAAAGATATTATCGGCTGGTTATTGGCAACTCATGGAGACTCCACAGG Ruppia_maritima_F_01 ATTACCATGGTAAGTATTGGCCACTCGGTGTTGCCCCTTCCGAGGAAAAGATTAAAGATATTATTGGCTGGTTATTGGCAAGTCATGGAGACTCCACGGG Ruppia_maritima_F_02 ATTACCATGGTAAGTATTGGCCACTCGGTGTTGCCCCCTCCGAGGAAAAGATTAAAGATATTATCGGCTGGTTATTGGCAACTCATGGAGACTCCACAGG Ruppia_polycarpa_A ATTACCATGGTAAGTATTGGCCACTCGGTGTTGCCCCGTCTGAGGAAAAGATTAAAGATATTATTGGCTGGTTATTGGCAAGTCATGGAGACTCCACAGG Ruppia_maritima_C ATTACCATGGTAAGTATTGGCCACTCGGTGTTGCCCCCTCCGAGGAAAAGATTAAAGATATTATCGGCTGGTTATTGGCAACTCATGGAGACTCCACAGG Ruppia_maritima_E ATTACCATGGTAAGTATTGGCCACTCGGTGTTGCCCCTTCCGAGGAAAAGATTAAAGATATTATTGGCTGGTTATTGGCAAGTCATGGAGACTCCACGGG Ruppia_maritima_A ATTACCATGGTAAGTATTGGCCACTCGGTGTTGCCCCCTCCGAGGAAAAGATTAAAGATATTATCGGCTGGTTATTGGCAACTCATGGAGACTCCACAGG 'Ruppia maritima B''' ATTACCATGGTAAGTATTGGCCACTCGGTGTTGCCCCCTCCGAGGAAAAGATTAAAGATATTATCGGCTGGTTATTGGCAACTCATGGAGACTCCACAGG 'Ruppia maritima B''''''' ATTACCATGGTAAGTATTGGCCACTCGGTGTTGCCCCCTCCGAGGAAAAGATTAAAGATATTATCGGCTGGTTATTGGCAACTCATGGAGACTCCACAGG Ruppia_maritima_G_01 ATTACCATGGTAAGTATTGGCCGCTCGGTGTTGCCCCGTCTGAGGAAAAGATTAAAGATATTATTGGCTGGTTATTGGCAAGTCATGGAGACTCCACGGG Ruppia_maritima_G_02 ATTACCATGGTAAGTATTGGCCACTCGGTGTTGCCCCCTCCGAGGAAAAGATTAAAGATATTATCGGCTGGTTATTGTTAACTCATGGAGACTCCACAGG 'Ruppia maritima B''''' ATTACCATGGTAAGTATTGGCCACTCGGTGTTGCCCCCTCCGAGGAAAAGATTAAAGATATTATCGGCTGGTTATTGGCAACTCATGGAGACTCCACAGG Ruppia_maritima_J_02 ATTACCATGGTAAGTATTGGCCACTCGGTGTTGCCCCTTCCGAGGAAAAGATTAAAGATATTATTGGCTGGTTATTGGCAAGTCATGGAGACTCCACGGG Ruppia_maritima_L_01 ATTACCATGGTAAGTATTGGCCACTCGGTGTTGCCCCTTCCGAGGAAAAGATTAAAGATATTATTGGCTGGTTATTGGCAAGTCATGGAGACTCCACGGG Ruppia_cirrhosa_B_02 ATTACCATGGTAAGTATTGGCCACTCGGTGTTGCCCCTTCCGAGGAAAAGATTAAAGATATTATTGGCTGGTTATTGGCAAGTCATGGAGACTCCACGGG Ruppia_maritima_K_02 ATTACCATGGTAAGTATTGGCCACTCGGTGTTGCCCCCTCCGAGGAAAAGATTAAAGATATTATCGGCTGGTTATTGGCAACTCATGGAGACTCCACAGG Ruppia_maritima_K_01 ATTACCATGGTAAGTATTGGCCACTCGGTGTTGCCCCTTCCGAGGAAAAGATTAAAGATATTATTGGCTGGTTATTGGCAAGTCATGGAGACTCCACGGG Ruppia_maritima_B CTTGAGCACAGACAGTTTGGCGGATGCTAGCTACCCAGCTGCCGCTTCCCTTGGGGATGCAGTTTGTGGCATGGCAGTGGCATATATCACCTCAAGAGAT Ruppia_polycarpa_B CTTGAGCACAGACAGTTTGGCGGATGCTAGCTACCCAGCTGCCGCTTCCCTTGGGGATGCAGTTTGTGGCATGGCAGTGGCATATATCACCTCAAGAGAT Ruppia_maritima_F_01 CTTGAGCACGGACAGTTTGGCGGATGCTAGCTACCCGGCTGCCGCTTCACTTGGGGATGCAGTTTGTGGCATGGCAGTGGCATATATCACCTCAAGAGAT Ruppia_maritima_F_02 CTTGAGCACAGACAGTTTGGCGGATGCTAGCTACCCAGCTGCCGCTTCCCTTGGGGATGCAGTTTGTGGCATGGCAGTGGCATATATCACCTCAAGAGAT Ruppia_polycarpa_A CTTGAGCACAGACAGTTTGGCGGATGCTAGCTACCCAGCTGCCGCTTCCCTTGGGGATGCAGTTTGTGGCATGGCAGTGGCATATATCACCTCAAGAGAT Ruppia_maritima_C CTTGAGCACAGACAGTTTGGCGGATGCTAGCTACCCAGCTGCCGCTTCCCTTGGGGATGCAGTTTGTGGCATGGCAGTGGCATATATCACCTCAAGAGAT Ruppia_maritima_E CTTGAGCACGGACAGTTTGGCGGATGCTAGCTACCCGGCTGCCGCTTCACTTGGGGATGCAGTTTGTGGCATGGCAGTGGCATATATCACCTCAAGAGAT Ruppia_maritima_A CTTGAGCACAGACAGTTTGGCGGATGCTAGCTACCCAGCTGCCGCTTCCCTTGGGGATGCAGTTTGTGGCATGGCAGTGGCATATATCACCTCGAGAGAT 'Ruppia maritima B''' CTTGAGCACAGACAGTTTGGCGGATGCTAGCTACCCAGCTGCCGCTTCCCTTGGGGATGCAGTTTGTGGCATGGCAGTGGCATATATCACCTCAAGAGAT 'Ruppia maritima B''''''' CTTGAGCACAGACAGTTTGGCGGATGCTAGCTACCCAGCTGCCGCTTCCCTTGGGGATGCAGTTTGTGGCATGGCAGTGGCATATATCACCTCAAGAGAT Ruppia_maritima_G_01 CTTGAGCACGGACAGTTTGGCGGATGCTAACTACCCAGCTGCCGCTTCCCTTGGGGATGCAGTTTGTGGCATGGCTGTGGCATATATCACCTCAAGAGAT Ruppia_maritima_G_02 CTTGAGCACAGACAGTTTGGCGGATGCTAGCTACCCAGCTGCCTCTTCCCTTGGGGATGCAGTTTGTGGCATGGCAGTGGCATATATCACCTCAAGAGAT 'Ruppia maritima B''''' CTTGAGCACAGACAGTTTGGCGGATGCTAGCTACCCAGCTGCCGCTTCCCTTGGGGATGCAGTTTGTGGCATGGCAGTGGCATATATCACCTCAAGAGAT Ruppia_maritima_J_02 CTTGAGCACGGACAGTTTGGCGGATGCTAGCTACCCGGCTGCCGCTTCACTTGGGGATGCAGTTTGTGGCATGGCAGTGGCATATATCACCTCAAGAGAT Ruppia_maritima_L_01 CTTGAGCACGGACAGTTTGGCGGATGCTAGCTACCCGGCTGCCGCTTCACTTGGGGATGCAGTTTGTGGCATGGCAGTGGCATATATCACCTCAAGAGAT Ruppia_cirrhosa_B_02 CTTGAGCACGGACAGTTTGGCGGATGCTAGCTACCCGGCTGCCGCTTCACTTGGGGATGCAGTTTGTGGCATGGCAGTGGCATATATCACCTCAAGAGAT Ruppia_maritima_K_02 CTTGAGCACAGACAGTTTGGCGGATGCTAGCTACCCAGCTGCCGCTTCCCTTGGGGATGCAGTTTGTGGCATGGCAGTGGCATATATCACCTCAAGAGAT Ruppia_maritima_K_01 CTTGAGCACGGACAGTTTGGCGGATGCTAGCTACCCGGCTGCCGCTTCACTTGGGGATGCAGTTTGTGGCATGGCAGTGGCATATATCACCTCAAGAGAT Ruppia_maritima_B TTTTTGTTTTGGTTTAGATCCCACACTGCAAAAGAAATAAAGTGGGGTGGTGCTAAACATCATCCTGAAGACAAGGATGATGGACAGCGTATGCATCCAC Ruppia_polycarpa_B TTTTTGTTTTGGTTTAGATCCCACACTGCAAAAGAAATAAAGTGGGGTGGTGCTAAACATCATCCTGAAGACAAGGATGATGGACAGCGTATGCATCCCC Ruppia_maritima_F_01 TTTTTGTTTTGGTTTAGATCCCATACTGCAAAAGAAATAAAGTGGGGTGGTGCTAAACATCATCCGGAAGACAAGGACGATGGACAGCGTATGCATCCCC Ruppia_maritima_F_02 TTTTTGTTTTGGTTTAGATCCCACACTGCAAAAGAAATAAAGTGGGGTGGTGCTAAACATCATCCTGAAGACAAGGATGATGGACAGCGTATGCATCCCC Ruppia_polycarpa_A TTTTTGTTTTGGTTTAGATCCCATACTGCAAAAGAAATAAAGTGGGGTGGAGCTAAACATCACCCGGAAGACAAGGACGATGGACAGCGTATGCATCCCC Ruppia_maritima_C TTTTTGTTTTGGTTTAGATCCCACACTGCAAAAGAAATAAAGTGGGGTGGTGCTAAACATCATCCTGAAGACAAGGATGATGGACAGCGTATGCATCCCC Ruppia_maritima_E TTTTTGTTTTGGTTTAGATCCCATACTGCAAAAGAAATAAAGTGGGGTGGTGCTAAACATCATCCGGAAGACAAGGACGATGGACAGCGTATGCATCCCC Ruppia_maritima_A TTTTTGTTTTGGTTTAGATCCCACACTGCAAAAGAAATAAAGTGGGGTGGTGCTAAACATCATCCTGAAGACAAGGATGATGGACAGCGTATGCATCCCC 'Ruppia maritima B''' TTTTTGTTTTGGTTTAGATCCCACACTGCAAAAGAAATAAAGTGGGGTGGTGCTAAACATCATCCTGAAGACAAGGATGATGGACAGCGTATGCATCCCC 'Ruppia maritima B''''''' TTTTTGTTTTGGTTTAGATCCCACACTGCAAAAGAAATAAAGTGGGGTGGTGCTAAACATCATCCTGAAGACAAGGATGATGGACAGCGTATGCATCCCC Ruppia_maritima_G_01 TTTTTGTTTTGGTTTAGATCCCATACTGCAAAAGAAATCAAGTGGGGTGGTGCTAAACATCATCCGGAAGACAAGGACGATGGACAGCGTATGCATCCCC Ruppia_maritima_G_02 TTTTTGTTTTGGTTTAGATCCCACACTGCAAAAGAAATAAAGTGGGGTGGTGCTAAACATCATCCTGAAGACAAGGATGATGGACAGCGTATGCATCCCC 'Ruppia maritima B''''' TTTTTGTTTTGGTTTAGATCCCACACTGCAAAAGAAATAAAGTGGGGTGGTGCTAAACATCATCCTGAAGACAAGGATGATGGACAGCGTATGCATCCCC Ruppia_maritima_J_02 TTTTTGTTTTGGTTTAGATCCCATACTGCAAAAGAAATAAAGTGGGGTGGTGCTAAACATCATCCGGAACACAAGGACGATGGACAGCGTATGCATCCCC Ruppia_maritima_L_01 TTTTTGTTTTGGTTTAGATCCCATACTGCAAAAGAAATAAAGTGGGGTGGTGCTAAACATCATCCGGAAGACAAGGACGATGGACAGCGTATGCATCCCC Ruppia_cirrhosa_B_02 TTTTTGTTTTGGTTTAGATCCCATACTGCAAAAGAAATAAAGTGGGGTGGTGCTAAACATCATCCAGAAGACAAGGACGATGGACAGCGTATGCATCCCC Ruppia_maritima_K_02 TTTTTGTTTTGGTTTAGATCCCACACTGCAAAAGAAATAAAGTGGGGTGGTGCTAAACATCATCCTGAAGACAAGGATGATGGACAGCGTATGCATCCCC Ruppia_maritima_K_01 TTCTTGTTTTGGTTTAGATCCCATACTGCAAAAGAAATAAAGTGGGGTGGTGCTAAACATCATCCGGAAGACAAGGACGATGGACAGCGTATGCATCCCC Ruppia_maritima_B GCACGTCTTTTAATGCCTTCCTGGAAGTTGTGAAGAGTAGGAGCCTTCCA Ruppia_polycarpa_B GCACATCTTTTAATGCCTTCCTGGAAGTTGTGAAGAGTAGGAGCCTTCCA Ruppia_maritima_F_01 GCACATCGTTTAATGCCTTCCTGGAAGTTGTGAAGAGTAGGAGCCTTCCA Ruppia_maritima_F_02 GCACATCTTTTAATGCCTTCCTGGAAGTTGTGAAGAGTAGGAGCCTTCCA Ruppia_polycarpa_A GCACATCTTTTAACGCCTTCCTGGAAGTTGTGAAAAGTAGGAGCCTTCCA Ruppia_maritima_C GCACATCTTTTAATGCCTTCCTGGAAGTTGTGAAGAGTAGGAGCCTTCCA Ruppia_maritima_E GCACATCGTTTAATGCCTTCCTGGAAGTTGTGAAGAGTAGGAGCCTTCCA Ruppia_maritima_A GCACATCTTTTAATGCCTTCCTGGAAGTTGTGAAGAGTAGGAGCCTTCCA 'Ruppia maritima B''' GCACGTCTTTTAATGCCTTCCTGGAAGTTGTGAAGAGTAGGAGCCTTCCA 'Ruppia maritima B''''''' GCACATCTTTTAATGCCTTCCTGGAAGTTGTGAAGAGTAGGAGCCTTCCA Ruppia_maritima_G_01 GCACATCTTTTAATGCCTTCCTAGAAGTTGTGAAGAGTAGGAGCCTTCCG Ruppia_maritima_G_02 GCACATCTTTTAATGCCTTCCTGGAAGTTGTGAAGAGTAGGAGCCTTCCA 'Ruppia maritima B''''' GCACGTCTTTTAATGCCTTCCTGGAAGTTGTGAAGAGTAGGAGCCTTCCA Ruppia_maritima_J_02 GCACATCGTTTAATGCCTTCCTGGAAGTTGTGAAGAGTAGGAGCCTTCCA Ruppia_maritima_L_01 GCACATCGTTTAATGCCTTCCTGGAAGTTGTGAAGAGTAGGAGCCTTCCA Ruppia_cirrhosa_B_02 GCACATCGTTTAATGCCTTCCTGGAAGTTGTGAAGAGTAGGAGCCTTCCA Ruppia_maritima_K_02 GCACATCTTTTAATGCCTTCCTGGAAGTTGTGAAGAGTAGGAGCCTTCCA Ruppia_maritima_K_01 GCACATCGTTTAATGCCTTCCTGGAAGTTGTGAAGAGTAGGAGCCTTCCA ; END; BEGIN MRBAYES; Lset nst = 2 rates = gamma; Prset statefreqpr = fixed ( equal ); END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 1050; END; BEGIN TREES; Title 'Trees from "Ruppia_phyB_Bayes.nex.con.tre"'; LINK Taxa = Taxa; TRANSLATE 1 Ruppia_maritima_B, 2 Ruppia_polycarpa_B, 3 Ruppia_maritima_F_01, 4 Ruppia_maritima_F_02, 5 Ruppia_polycarpa_A, 6 Ruppia_maritima_C, 7 Ruppia_maritima_E, 8 Ruppia_maritima_A, 9 'Ruppia maritima B''', 10 'Ruppia maritima B''''''', 11 Ruppia_maritima_G_01, 12 Ruppia_maritima_G_02, 13 'Ruppia maritima B''''', 14 Ruppia_maritima_J_02, 15 Ruppia_maritima_L_01, 16 Ruppia_cirrhosa_B_02, 17 Ruppia_maritima_K_02, 18 Ruppia_maritima_K_01; TREE con_50_majrule = (1:0.002011,9:0.001017,((((2:9.89E-4,8:0.008118,12:0.007296)0.65:0.002181,(((3:0.004084,(7:0.00111,14:0.002048)1.00:0.005098,15:0.001032,16:0.002059,18:0.002175)1.00:0.016318,11:0.021869)0.97:0.006224,5:0.022741)1.00:0.012869)1.00:0.004381,(4:0.001846,17:0.001175)0.87:0.002036,(6:0.001031,10:0.002156)1.00:0.002816)1.00:0.002979,13:0.001037)0.97:0.00202); TREE con_50_majrule = (1:0.002011,9:0.001017,((((2:9.89E-4,8:0.008118,12:0.007296):0.002181,(((3:0.004084,(7:0.00111,14:0.002048):0.005098,15:0.001032,16:0.002059,18:0.002175):0.016318,11:0.021869):0.006224,5:0.022741):0.012869):0.004381,(4:0.001846,17:0.001175):0.002036,(6:0.001031,10:0.002156):0.002816):0.002979,13:0.001037):0.00202); END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 1050; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 1050; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1338591251363; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 8225916655263012959; tell It; setSelected 5; attachments ; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 8833957691817125002; mqVersion 275; checksumv 0 3 3182902411 null getNumChars 1050 numChars 1050 getNumTaxa 18 numTaxa 18 short true bits 15 states 15 sumSquaresStatesOnly 432678.0 sumSquares 432678.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 673 673; setLocation 672 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #8225916655263012959 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #8225916655263012959; getWindow; tell It; newAssistant #mesquite.lists.DefaultTaxaOrder.DefaultTaxaOrder; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 573 606; setLocation 672 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.ibeam; endTell; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #8225916655263012959 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 868.1338591115115.2896822636013529217; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 573 606; setLocation 672 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.reroot; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle on; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 6; orientUp; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setTree '(5:0.0113705,((11:0.021869,(3:0.004084,15:0.001032,16:0.002059,18:0.002175,(7:0.00111,14:0.002048)1.00:0.005098)1.00:0.016318)0.97:0.006224,((2:9.89E-4,8:0.008118,12:0.007296)0.65:0.002181,((4:0.001846,17:0.001175)0.87:0.002036,(6:0.001031,10:0.002156)1.00:0.002816,(13:0.001037,(1:0.002011,9:0.001017):0.00202)0.97:0.002979)1.00:0.004381)1.00:0.012869)1.00:0.0113705);'; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;