#NEXUS [MacClade 4.08 registered to Evolutionary Phytopathology, CBS-KNAW] BEGIN DATA; DIMENSIONS NTAX=31 NCHAR=820; FORMAT DATATYPE=DNA MISSING=? GAP=- MATCHCHAR=. ; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .] Cephalotheca_sulfurea_AB278194 TGCCCTTTGTACACACCGCCCGTCGCTACTACCGATTGAATGGCTCAGTGAGGCTTTCGGACTGGCCCAGAGAGGTTGGCAACGACCACTCAGGGCCGGAAAGTTATCCAAACTCGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATCATTACA--GA-GTTTAACGACTCC--CAA-ACCACTGTGAAACATACCCGT--ACCGTTGCCTCGGTG-GGCGGCCCC--------------------AGGGCGGGGCCGCAGCCTCCTAGCGGAGG-------CGCCCGCCGCAGGTCACAAAACTA-TACCGATA---TCTA-GTGGCATCTCTGAGT-AAC-TTCCAAACAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTCCGAGCGTCATTT-CAACCCTCAAGCCCT----GCTTGGTGTTGGGGC-ACTACGCGCAAGCG-TGTAGGCCCTTAAAAT-CAGTGGCGGACTCGCTGGAGG--T-CCGGGCGTAGTAATACA---TCT-CGCCCGAGGTCCCCA-GCGTGCC--CCTGCCGTTAAACCCCC------------------------AAACTTAC--AGAAG-GTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA-------------------- [712] Pyrigemmula_aurantiaca_HM241692 ---------------------------------------------------------------------.G.....C............CTG...........C..............................................................................--..-.G.GC.A-..C..--T..A.....C.....-.T......AAA.A...........C.-....CTG----------------------------------------------------------.........GC..C.CA-.G...C-.TGTCTCT--TG.G--T.........C....-C.T-GA.A..CG.G.............................................................................................................................G....C.C...............T............C.........G....G----..C.....C...A.A-C..G.------.T.-CCGCA.T.TCCC...GC...C.....G.GT..A-.T..--.C.............GCT.-ACG..-.....CG...G..GC-...C..T--........A...AA...---------------------------.....--..T.CG...........................................................AAAGAAACCAACAGGGATTG [628] Dendrophoma_cytisporoides_CBS_223.95 ........................................................C.............G....CC.......G....C.............C..............................................................................-G..---CGTCAA.....CGT..-...........-.C....TA.-A.T...........C.-...TC..TGG------------------------------C.TC-.GG.C..G..CTCC------A........GC..C.C.C.T...C-CTGGCTC-ATCG.G--T..............--.AC.ATA...-...A..........................C....................................................................................................C..................T...........A-.........G.....----..C...C........-T..G.C-----.TA--CGGC.G..C.C....A...C......TG.CTCTTGC.AGACAATAA........ATAT---C..-..TTA..AA.G.T.GC.TCGTGT--..G.....A....AGTGCCTCATCAGTCCCCTGGACTGCCCGGG.GCG.T-TCT.TG...........................................................AAAGAAACCAACAGGGATTG [748] Chaetosphaeria_hebetiseta_AF178549 -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------...-G..AC.CGC.A..T...--T..-...CTC.....-.C....GA---.A...........C.-....C..GGC-------------------------------.TCT.GTGCC.G.CGTTG------.........GC..C.C.C-T...C--TGTCTCTGCAG.G--T.........C....--.TA.A.A..CG....................................................................................................................................C.................T............-.C.......G..T.G----..C...........G-C..G.C-----...CGCGCA....CCG...GA...C.....T.C..A.CCC..--CT...A.............---CG.-...T.TG..CG..TG-...G..TTT..A....GA..-.----------------------------TC..G..---TC..TG....................?.-...............................?.A..AAAGAAACCAACAGGGATTG [537] Chaetosphaeria_callimorpha_AF178555 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A.TG..-A.CGC.A..TCT.CCTT.A....TC.....-......GA---.A...........C.-....C.TGGT-----------------------------GC.TCTGG.GCC.G.CGTTC------A........GC..C.C.C-T...C--TGTCTCTGCAG.G---........-C...A-T.AACA.A..TG......................................................................................................................................................T............-.........G....G----..C...........A-C..G.------CAC-GCGCA....CCG...GAG..C.....T.C..T.CCC..--CT...A........GC.T.---CTG-A..T.TG..CG..GG-...G..AA-.......GA....A...C--------------------------...TTTCT?C.AG.........................------------------------------------------------------ [490] Brunneodinemasporium_brasiliense_CBS_112007 ---------------------------------------------------------------------------------------------------------------------------------------------------------------------.................-G..-C.CGC.A......CGT..-...........C.T....TA.-AGT...........C.-..T.T.T.TC---------------------CT.TCCCT...G.GGA.GGGAG.CGTCC-----AA........GC..C...CC....C--TGTCTC.-CTG.G--T.........C...CA..A-GA.A..CG...................................................................................................................................C..................T............-.........G..T..----..C...C........TC..G.T-----T.C-GAGCA.G..CCC...GA.........GTG...C-CC..--AA...AA..C....G.TAC--T...-..TT.TG.AA..G.C-...CT.T--..G.....A....A...C--------------------------A..TTT-CTC.TG.......................-------------------------------------------------------- [515] Menispora_tortuosa_AF178558 -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------...-G..-C.CGC.A......CGT.--...........-.C....TCA-AGT...........C.-..T.CT.AGG------------------------------A.T.-TGT.C..G.CGCTC------.........GT..-.C..CT...C--TGTCTCG--CG.G--T.........C....-C.T-..T-..CG.G...............................................................................................................................T..C.................T............-.........G..T..----..C...C.......G-C..G.------..T---GCA....CCT...GA...C.....GTG...C-CT.A--AA.T.AA.......T.GT.---...-..TT.TG.TG-.AGG-....A.T--..G....GA....-------------------------------..-----TCT.TG..................TA................................--------------------------- [498] Menispora_manitobaensis_EU488738 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.......-G..-C.CGC.A......CGT.--...........-.C....TCA-AGT...........C.-..T.CT.AGG------------------------------A.C.-TGT.C..G.CGCTC------.........GT..-.CT.CT...C--TATCTCG--CG.G--T.........C....-C.T-..T-..CG.G...............................................................................................................................T..C.................T............-.........G..T..----..C...C.......G-C..G.------..C---GCA....CCT...GA.........GTG....-CT.A--AA.T.AA.......C.GT.---...-..TT.TG.TG-.AG.-....A.T--..G....GA....-----------------------------CC...----TCT.TG.------------------------------------------------------------------------------ [454] Menispora_ciliata_EU488737 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.......-G..-C.CGC.A.G....CGT.--...........-.T....TA.-ATT...........C.-..T.C..TAG------------------------------A.TCATAT....G.C.TTC------AA.......GT..-.CT.C....C--TGTCTCG--CG.G--T.........C....-C.T-..TA..CG.G...............................................................................................................................T..C.................T............-.........G..T..----..C...C.......T-C..G.------.AT---GCA....CCT...GA...C....AG.....C-CC.A--AG.T.AA............---...-..TT.TG.TG-.AGG-....C.T---.G....GA....------------------------------...-----TCT.TG.------------------------------------------------------------------------------ [453] Zignoella_pulviscula_AF178543 -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------...-G..-C.CGC.A.G....CGT.--...........-.T....TAA-AGT...........C.-..T.C...GG------------------------------A.TC-TGT.CG.G.CGTCC------AA.......GT..C.CT.C....C--TGTCTCG--CG.G--T.........C....-C.T-..TA..CG.G...............................................................................................................................T..C.................T............-.........G..T..----..C...........G-C..G.------..T---GCA....CCT...GA...C....AGTA...C-CC.A--AG.T.AA.......T.GT.---...C..TT.TG.TG-.AGG-...CT.T---.G....GA....------------------------------G...----TCC.TG..................------------------------------------------------------------- [468] Codinaeopsis_gonytrichoides_AF178556 -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------...-G..-C.CGC.A......CGT.--...........-.-....T----TTT..........C.-..T.CT..GG------------------------------.TTC-TG-.CG.G.CGCTA------.........GT..C.CT.-....C-.TGTCTCG--CG.G--T.........C...CAG..-.AT-..CG.G.................................................................................................................................C...............................-.........G....C----..C...C.....A..-C..G.------..A-GTGCA.G.TCCC...GA.........G.G...C-CC..--AA...A..........CTC---...-..TT.TG.TCTGG.G-...C..T--..G.....A........-------------------------.....----TTCGTG..................TA...................?................A..AAAGAAACCAACAGGGATTG [532] Dictyochaeta_fertilis_AF178540 -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------...-G..-C.CGC.A......CGT.--...C..............TA.-ATT...........C.-..T.CT..GG---------------------------------TT.GT.CG.G.CGCTA------.........GT..C.CG-TT...C--TGTCTCG--CG.G--T.........C....AC.A-.A.A..TA.G.T...........................................................................................................................G.T..C.C...............T...........A-.........G...AC----..C...C........-C..G.------...---GCA.G..CCG...GA...C.....GTG..TC-CCAC--GA...AA..C....G.TAC--T...-..TT.CG..C--G.GA...CATG--..G.....A........---------------------------A..T---TT..AG........................................................A..AAAGAAACCAACAGGGA?TG [533] Dictyochaeta_simplex_EF029193 -------------------------------------------------------------------------------------------------------------------------------------------------------------------.T.................-G..-C.CGC.A......CGT.--...C.......-......TA.-ATT...........C.-..T.CT..GG---------------------------------TT.GT.CG.G.CGCTA------.........GT..C.CG-TT...C--TGTCTCG--CG.G--T.........C....AC.A-.A.A..TA.G.T...........................................................................................................................G.T..C.C...............T...........A-.........G...AC----..C...C........-C..G.------...---GCA.G..CCG...GA...C.....GTG..TC-CCAC--GA...AA..C....G.TAC--T...-..TT.CG..C--G.GA...CATG--..G.....A........C--------------------------A..T---TT..AG...............................................-------------------------------- [517] Pseudolachnea_fraxini_CBS_113701 ------------------------------------------------------------------------------------------------------------..........................................................................-G..--.-GC.AC.....CGT.--...........-.C....TAC--CA...........C.-..T.CTGG.T-------------------------------------.GCCCA.CGCTC------.........GC..C.TA-CT...C--TGTCTC.TCTG.G--T.........C...A-..A-CA.A..CG...................................................................................................................................C..................T...........A-.........G.....----..C...C........-C..G.------..--.TGCA.G..C.C...GA...C.....GTG...C--C..--AA...AA.......GCTT.--C...-..TT.TG.AA..G.G-......T--..G.....A........---------------------------A.CTT--.CGTTA......................--------------------------------------------------------- [542] Thozetella_acerosa_AY330996 -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------...-G..-C.CGC.A......CGT.--...........T.T....T----TT...........C.-..T.CTAGA---------------------------------------..CTA.CGCTC-----A.........GC..C.CA-C....CG.TGTC.A.----.G--T.A.......C...CTT.AACA.A..CG...............................................................................................................................G.T....C...............T............-.........G...TC----..C............TC..G.------..A-CCGCA.G..C.C...GG...C.....GTG...C-T.C.--AA...AA..C....G.TTT--C...-..TT.TG.TCT.T.GG......T--..G..............TT-------------------------A.ACT--TC..TG....--------------------------------------------------------------------------- [459] Thozetella_falcata_AY331004 -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------...-G..-C.CGC.A......CGT.--...........T......T----TTT..........C.-..T.CTGGT---------------------------------------..CCA.CGCTC------.........AC..C.CA-C....CG.TGTCT.T-----.--A.A.......C...C-C.AA.A.A..CG...............................................................................................................................G.T..C.C...............T............-.........G..T.C----..C............TC..G.------..A-CTGCA.G..C.C...GG...C.....GTG...C-T.C.--AA...AA..C....G.TTT--C...-..TT.TG.TCG.G.GG......T--..G.....A.......-------------------------TTTA..T---TC..TG....--------------------------------------------------------------------------- [455] Thozetella_nivea_EU825201 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.......-G..-T.CGC.A.T....CGT.--...........CTT....T----TTT..........C.-..T.CTGGT--------------------------------------...CCA.CGCTC-----A.........AC..C.CA-T....CA.TGTCTG.--C...---AA.......C...C-C.TACA.A..CG...............................................................................................................................G.T....C...............T............-.........G...TC----..C............TC..G.------..A-CTGCA.G..C.C...GG...C.....GTG...C-T.C.--AA...AA..C....G.CTT--C...-..TT.TG.TCTTG.GG......T--..G.............-------------------------TTTA..TT--TC..TG....................................................--------------------------- [512] Thozetella_havanensis_EF029184 --------------------------------------------------------------------------------------------------------------------------------------------------------------------T.................-G..-C.CGC.A......CGT.--...........C.T....A----CT...........C.-.CT.C.------------------------------------------.CCCG..G---------.........AC..C.CA-C....CG.TGTCTA---CAAC--T.-.......C...C-C.AA.A.A..CG...............................................................................................................................G.T..C.C...............T............-.........G..T.C----..C............TC..G.------..A-CCGCA.G..C.C...GG...C.....GTG...C-C.C.--AA...AA..C....G.TTT--C...-..TT.TG.TCG.G.GG......T--..G..............C--------------------------...TAACTC..TG...............................................-------------------------------- [510] Dinemasporium_decipiens_CBS_592.73 ---------------------------------------------------------------------------------------------------------------------------------------------------------------------.................-G..---CGTCAC.....CGT..T....T......C.C....TAC-CGT...........C.-....C.TT.C-----------------------------------.CAT-C.T..G--------A.........GC..C.C..TT...C-.TGTCT.---T.AA-TT.........C....-.CTA.A.A..CG.G..................................................................................................................................C.................T............-..............CCG-G.............AGCC..G.------..A-.CGCA..T.CCC...GA...C.....G.GT.GC-CT..--CA...AA.......GACTCT-C...-..TT..C.....AGG-...C.TA--..G....G.....A...C--------------------------...TT--TTCGTG.........................------------------------------------------------------ [500] Dinemasporium_morbidum_CBS_129.66 ........................................................C.............G....CC.......G....C.............C..............................................................................-G..---CGTCAT.....CGT..T...........T.T....TAC-CGT...........C.-....C.T.TC------------------------------CGCT-TG.GGG.A..GCCC-----A..T......GC..C.CGC.T...C-.TGTCT.---T.TA--T.A.......C....-.TTA.A.A..CG.G.T.............................................................................................................................T..C.................T............-..............CCGCG..............G-C..G.------..A-CCGCA....CCT...GA...C.....G.GT.GC-CT..--.A...AA.......GATTCTACC..-..TT..C.....AGG-...C..T--..G....G.........-------------------------.T...T---.C..TG...........................................................AAAGAAACCAACAGGGATTG [727] Dinemasporium_morbidum_CBS_995.97 ........................................................C.............G....CC.......G....C.............C..............................................................................-G..---CGTCAT.....CGT..T...........T.T....TAC-CGT...........C.-....C.T.TC------------------------------CGCT-TG.GGG.A..GCCC-----A..T......GC..C.CGC.T...C-.TGTCT.---T.TA--T.A.......C....-.TTA.A.A..CG.G.T.............................................................................................................................T..C.................T............-..............CCGCG..............G-C..G.------..A-CCGCA....CCT...GA...C.....G.GT.GC-CT..--.A...AA.......GATTCTACC..-..TT..C.....AGG-...C..T--..G....G.........-------------------------.T...T---.C..TG...........................................................AAAGAAACCAACAGGGATTG [727] Dinemasporium_pseudostrigosum_CBS_825.91 ........................................................C.............G....CC.......G....C.............C..............................................................................-G..---CGTCAT.....CGT..T...........T.T....TAC-CGT...........C.T....CT...C---------------------------------------GG.GAA.CCC--GCGG.........GC..C.CGC.T...C--TGTTT.T--AGAAC-T.T.......C....-.TTA.A.A..CG.G..................................................................................................................................C.................T............-..............CCGCG..............A-C..G.------..A-.CGCA....CCT...GA...C.....G.GT.GC-CT..--CA...AA.......GACTCT-C...-..TT..C.....AGG-...C..T--..G....G.........-------------------------.T...TT--.C..TG...........................................................AAAGAAACCAACAGGGATTG [724] Dinemasporium_pseudostrigosum_CBS_717.85 ........................................................C.............G....CC.......G....C.............C..............................................................................-G..---CGTCAT.....CGT..T...........T.T....TAC-CGT...........C.T....CT...C---------------------------------------GG.GAA.CCC--GCGG.........GC..C.CGC.T...C--TGTTT.---AGAAC-TAC.......C....-.TTA.A.A..CG.G..................................................................................................................................C.................T............-..............CCGCG..............A-C..G.------..A-CCGCA....CCT...GA...C.....G.GT.GC-CT..--CA...AA.......GACTCT-C...-..TT..C..C..AGG-...C..T--..G....G.........-------------------------.T...TT--.C..TG...........................................................AAAGAAACCAACAGGGATTG [723] Dinemasporium_strigosum_CBS_520.78 ........................................................C.............G....CC.......G....C.............C..............................................................................-G..---CGTCAT.....CGT..T...........T.T....TAC-CGT...........C.-....C...GG--------------------------------------GGG.GAA.CCCCTCTGGA........GC..C.CGC.T...C--TGTCTC---AG.GTGT.........C....-.TTA.A.A..CG.G..................................................................................................................................C.................T............-..............CCGCG..............G-C..G.------...-.CGCA....CCT...GA...C.....G.GT.GC-CT..--CA...AA.......GACTCT-C...-..TT..C.....AGG-...C..T--..G....G.........C------------------------.T...T---.C..TG...........................................................AAAGAAACCAACAGGGATTG [726] Dinemasporium_strigosum_CBS_828.84 ........................................................C.............G....CC.......G....C.............C..............................................................................-G..---CGTCAT.....CGT..T...........T.T....TAC-CGT...........C.-....C...GG--------------------------------------GGG.GAA.CCCCTCTGGA........GC..C.CGC.T...C--TGTCTC---AG.GTGT.........C....-.TTA.A.A..CG.G..................................................................................................................................C.................T............-..............CCGCG..............G-C..G.------...-.CGCA....CCT...GA...C.....G.GT.GC-CT..--CA...AA.......GACTCT-C...-..TT..C.....AGG-...C..T--..G....G.........C------------------------.T...T---.C..TG...........................................................AAAGAAACCAACAGGGATTG [726] Dinemasporium_strigosum_CPC_18957 -----------------------------------------------------------------------------------------------------------------------------------------.............................................-G..---CGTCAT.....CGT..T...........T.T....TAC-CGT...........C.-....C...GG--------------------------------------GGG.GAA.CCCCTCTGGA........GC..C.CGC.T...C--TGTCTC---AG.GTGT.........C....-.TTA.A.A..CG.G..................................................................................................................................C.................T............-..............CCGCG..............G-C..G.------...-.CGCA....CCT...GA...C.....G.GT.GC-CT..--CA...AA.......GACTCT-C...-..TT..C.....AGG-...C..T--..G....G.........C------------------------.T...T---.C..TG....................................................--------------------------- [562] Dinemasporium_strigosum_CPC_18898 ----------------------------------------------------------------------------------------------------------------------------------------------........................................-G..---CGTCAT.....CGT..T...........T.T....TAC-CGT...........C.-....C...GG--------------------------------------GGG.GAA.CCCCTCTGGA........GC..C.CGC.T...C--TGTCTC---AG.GTGT.........C....-.TTA.A.A..CG.G..................................................................................................................................C.................T............-..............CCGCG..............G-C..G.------...-.CGCA....CCT...GA...C.....G.GT.GC-CT..--CA...AA.......GACTCT-C...-..TT..C.....AGG-...C..T--..G....G.........C------------------------.T...T---.C..TG......................................----------------------------------------- [543] Dinemasporium_strigosum_CPC_19796 -----------------------------------------------------------------------------------------------------------------------------T........................................................-G..---CGTCAT.....CGT..T...........T.T....TAC-CGT...........C.-....C...GG-------------------------------------GGGG.GAA.CCCCTCTGGA........GC..C.CGC.T...C--TGTCTC---AG.GTGT.........C....-.TTA.A.A..CG.G..................................................................................................................................C.................T............-..............CCGCG..............G-C..G.------...-.CGCA....CCT...GA...C.....G.GT.GC-CT..--CA...AA.......GACTCT-C...-..TT..C.....AGG-...C..T--..G....G.........C------------------------.T...T---.C..TG.......................................................------------------------ [578] Dinemasporium_americana_CBS_127127 ---------------------------------------------------------------------------------------------------------------------------------------------------------------------.................GG..---CGTCAT.....CGT..T...........T.T....TAC-CGT...........C.-....C..------------------------------------------GG.GAA.CCC----GCA........GC..C.CGC.T...C--TGTCTC---AG.GTGT.........C....-.TTA.A.A..CG.G..................................................................................................................................C.................T............-..............CCGCG..............G-C..G.------..A-CCGCA....CCT...GA...C.....G.GT.GC-CT..--CA...AA.......GACTCT-C...-..TT..C.....AGG-...C..T--..G....G.........-------------------------.T...TT--.C..TG.......................-------------------------------------------------------- [498] Dinemasporium_pseudoindicum_CBS_127402 ........................................................C.............G....CC.......G....C.............C..............................................................................-G..---CGTCAT.....CGT..T...........T.T....TAC-CGT...........C.-....C.T.TC---------------------CC....A.ACGCT..CGGGG.G...CCC-----G.........GC..C.CGC.....C--TGTCTC---AG.GTGT.........C....-.CTA.A.A..CG.G..................................................................................................................................C.................T............-..............CCGCG..............A-C..G.------..ACCCGCA....CCT...GA...C.....G.GT.GC-CT..--CA...AA.......GACTCT-C...-..TT..C.....AGG-...C..T--..G....G.........-------------------------.T...TT--.C..TG...........................................................AAAGAAACCAACAGGGATTG [739] Dinemasporium_polygonum_CBS_516.95 ........................................................C.............G....CC.......G....C.............C..............................................................................-G..---CGTCAT.....CGT..T...........T.T....TAC-CGT...........C.-.A..C.T..CGGGCGGCATGGGGTCTTCGGACCTCC......CCG..G.GG.A..GTCC-----A..T......GC..C.CGC.T...C--TGTCTC---AG.GTGT.........C....-.TTA.A.A..CG.G..................................................................................C...............................................C.................T............-..............CCGCG..............G-C..G.------..A-CCGCA....CCT...GA...C.....G.GT.GC-CT..--CA...AA.......GACTCT-C...-..TT..C.....AGG-...C..T--..G....G.........-------------------------.T...TT--.C..TG...........................................................AAAGAAACCAACAGGGATTG [759] ; END; BEGIN TREES; TRANSLATE 1 Cephalotheca_sulfurea_AB278194, 2 Pyrigemmula_aurantiaca_HM241692, 3 Dendrophoma_cytisporoides_CBS_223.95, 4 Chaetosphaeria_hebetiseta_AF178549, 5 Chaetosphaeria_callimorpha_AF178555, 6 Brunneodinemasporium_brasiliense_CBS_112007, 7 Menispora_tortuosa_AF178558, 8 Menispora_manitobaensis_EU488738, 9 Menispora_ciliata_EU488737, 10 Zignoella_pulviscula_AF178543, 11 Codinaeopsis_gonytrichoides_AF178556, 12 Dictyochaeta_fertilis_AF178540, 13 Dictyochaeta_simplex_EF029193, 14 Pseudolachnea_fraxini_CBS_113701, 15 Thozetella_acerosa_AY330996, 16 Thozetella_falcata_AY331004, 17 Thozetella_nivea_EU825201, 18 Thozetella_havanensis_EF029184, 19 Dinemasporium_decipiens_CBS_592.73, 20 Dinemasporium_morbidum_CBS_129.66, 21 Dinemasporium_morbidum_CBS_995.97, 22 Dinemasporium_pseudostrigosum_CBS_825.91, 23 Dinemasporium_pseudostrigosum_CBS_717.85, 24 Dinemasporium_strigosum_CBS_520.78, 25 Dinemasporium_strigosum_CBS_828.84, 26 Dinemasporium_strigosum_CPC_18957, 27 Dinemasporium_strigosum_CPC_18898, 28 Dinemasporium_strigosum_CPC_19796, 29 Dinemasporium_americana_CBS_127127, 30 Dinemasporium_pseudoindicum_CBS_127402, 31 Dinemasporium_polygonum_CBS_516.95 ; TREE * Fig._2 = [&R] (1,(2,(((((3,(4,5)),6),(((7,8),(9,10)),(11,(12,13)))),(14,((15,(16,17)),18))),(19,((20,21),((((22,23),((24,25,26,27,28),29)),30),31)))))); END; BEGIN CODONS; CODONPOSSET * CodonPositions = N: 1-820; CODESET * UNTITLED = Universal: all ; END; BEGIN SETS; CHARSET allfive = 181-256 284-704 726-742; TAXSET outgroups = 1; END; BEGIN ASSUMPTIONS; OPTIONS DEFTYPE=unord PolyTcount=MINSTEPS ; END; BEGIN PAUP; LOG start=yes append=yes; set autoclose=yes warnreset=no torder=right; [This turns off some user-prompts.] OUTGROUP outgroups/only; exclude 1-./only; include allfive/only; [The following will calculate a distance tree using the uncorrected p substitution model, breaking ties randomly when they are encountered] SET CRITERION=distance maxtrees=1000 increase=no storebrlens=yes outroot=paraphyl; DSet distance=p; NJ breakties=random brlens=yes showtree=yes; Savetrees from=1 to=1 format=nexus brlens=yes maxdecimals=6 file = DinemasporiumITSuncorrectedp.tre; Bootstrap nreps=1000 search=nj; Savetrees from=1 to=1 file = DinemasporiumITSuncorrectedpbs.tre format=nexus brlens=yes savebootp=nodelabels maxdecimals=0; [The following will calculate a distance tree using the Kimura 2-parameter substitution model, breaking ties randomly when they are encountered] DSet distance=k2p; NJ breakties=random brlens=yes showtree=yes; Savetrees from=1 to=1 format=nexus brlens=yes maxdecimals=6 file = DinemasporiumITSkimura2p.tre; Bootstrap nreps=1000 search=nj; Savetrees from=1 to=1 format=nexus brlens=yes savebootp=nodelabels maxdecimals=0 file = DinemasporiumITSkimura2pbs.tre; [The following will calculate a distance tree using the HKY85 substitution model, breaking ties randomly when they are encountered] DSet distance=hky85; NJ breakties=random brlens=yes showtree=yes; Savetrees from=1 to=1 format=nexus brlens=yes maxdecimals=6 file = DinemasporiumITShky85.tre; Bootstrap nreps=1000 search=nj; Savetrees from=1 to=1 format= nexus brlens=yes savebootp=nodelabels maxdecimals=0 file = DinemasporiumITShky85bs.tre; [The following will calculate the parsimony trees using 100 random taxon additions] SET CRITERION=parsimony maxtrees=1000 increase=no storebrlens=yes outroot=paraphyl; Pset gapmode=newstate; [alternative: Pset gapmode=missing;] HSEARCH ADDSEQ=random NREPS=100 SWAP=TBR; Savetrees format=nexus brlens=yes maxdecimals=0 file = DinemasporiumITSparsimony.trees; PSCORES 1/TL=yes CI=yes RI=yes RC=yes HI=yes; Contree ALL/strict=yes treefile = DinemasporiumITSparsimonycons.tre; Bootstrap nreps=1000 search=heuristic; Savetrees from=1 to=1 format=nexus brlens=yes savebootp=nodelabels maxdecimals=0 file = DinemasporiumITSparsimonybootstrap.tre; Log stop=yes; END; BEGIN MacClade; Version 4.0 87; LastModified -873103539; FileSettings editor '0' '0' '1' '1'; Singles 100; Editor 00011001111111100100010010 '0' '24' Geneva '9' '340' '1' all; EditorPosition '46' '6' '739' 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