#NEXUS [written Sat Jun 09 20:46:23 JST 2012 by Mesquite version 2.75 (build 564) at Fujitsu/127.0.0.1] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=17; TAXLABELS HAPLOTYPE_A HAPLOTYPE_B HAPLOTYPE_C HAPLOTYPE_D HAPLOTYPE_E HAPLOTYPE_F HAPLOTYPE_G HAPLOTYPE_H HAPLOTYPE_I HAPLOTYPE_J HAPLOTYPE_K HAPLOTYPE_L HAPLOTYPE_M HAPLOTYPE_N HAPLOTYPE_O HAPLOTYPE_P OUTGROUP ; END; BEGIN CHARACTERS; TITLE 'Chloroplast DNA - DNA'; DIMENSIONS NCHAR=1544; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX HAPLOTYPE_A TTGACTTATTACACTCCCGAATACAAGACCAAAGATACTGATATCTTAGCGGCTTTCCGAATGACCCCACAACCTGGAGTACCGGCTGAGGAGGCCGGAGCTGCAGTAGCTGCGGAATCCTCTACGGGTACCTGGACCACAGTATGGACAGACGGACTTACCAGTCTCGATCGCTACAAGGGCCGGTGTTACGATATTGAGCCCGTCGCTGGGGAGGAAAATCAGTATATTGCGTATGTAGCTTATCCCCTGGATTTATTCGAGGAAGGTTCCGTCACCAATATGCTGACTTCCATTGTAGGTAATGTTTTTGGATTCAAGGCCCTACGCGCTCTGCGTCTGGAAGACCTACGAATTCCTCCTGCGTATTCCAAAACTTTTCAAGGACCCCCACACGGCATTCAGGTAGAAAGGGATAAACTAAACAAATATGGACGTCCCCTACTGGGATGTACAATCAAGCCAAAATTGGGCTTGTCTGCCAAAAATTATGGTAGAGCAGTTTATGAATGCCTTCGTGGTGGACTTGATTTCACGAAAGATGATGAAAACGTGAATTCCCAACCTTTCATGCGTTGGAGAGACCGCTTCTTATTTGTAGCAGAAGCCCTTTTTAAAGCCCAGGCGGAAACGGGTGAAATCAAGGGACATTATTTAAATGCCACTGCAGGCACCTGTGAAGAGATGATGAAGAGAGCTGTTTTCGCCAGAGAATTGGGTGCGCCAATCGTCATGCATGACTACTTGACTGGGGGATTTACCGCAAATACCAGCTTAGCATTCTATTGCAGAGACAACGGACTACTTCTTCACATTCACCGGGCGATGCATGCTGTCATCGATAGACAACGAAATCACGGTATGCATTTCCGTGTATTAGCCAAAGCATTGCGCATGTCTGGTGGGGATCATGTCCATGCCGGAACTGTAGTGGGCAAATTAGAAGGTGAACGAGAAGTTACCCTGGGATTTGTCGACTTACTTCGCGACGATTATATTGAAAAGGATCGTAGCCGCGGCATCTATTTTACCCAAGATTGGGTATCCATGCCAGGTGTACTGCCCGTAGCTTCGGGTGGTATTCACGTCTGGCACATGCCTGCCCTAACCGAAATCTTCGGGGACGATTCTGTCTTACAATTCGGCGGGGGAACGTTGGGACATCCCTGGGGAAATGCACCCGGTGCTGTAGCTAACCGAGTTGCGGTGGAGGCTTGCGTACAAGCTCGTAACGAGCTGAGCTATAGCCCTTGACAAAATTGTTCATGTAACAAATATTCTATCCGTGACAACTAATTTATGTCAAGTCAATCAGTTGAAAGAAAAAATATTGAACCAGCAACTT----CTTATGTAACATGAACTTGCTTCCGGCCATTTCTCGTAGGTATAA----------TATATATATACAGGTGAACATACACAGATAAATACATATAAAAATATCTGAATCTATGTTATATACAGCAATATGAATCCCACATCT------GAGTAGGTGGGAATGATGACATTGGTGCGTAGGAAGGTGGCGGAGAC HAPLOTYPE_B TTGACTTATTACACTCCCGAATACAAGACCAAAGATACTGATATCTTAGCGGCTTTCCGAATGACCCCACAACCTGGAGTACCGGCTGAGGAGGCCGGAGCTGCAGTAGCTGCGGAATCCTCTACGGGTACCTGGACCACAGTATGGACAGACGGACTTACCAGTCTCGATCGCTACAAGGGCCGGTGTTACGATATTGAGCCCGTCGCTGGGGAGGAAAATCAGTATATTGCGTATGTAGCTTATCCCCTGGATTTATTCGAGGAAGGTTCCGTCACCAATATGCTGACTTCCATTGTAGGTAATGTTTTTGGATTCAAGGCCCTACGCGCTCTGCGTCTGGAAGACCTACGAATTCCTCCTGCGTATTCCAAAACTTTTCAAGGACCCCCACACGGCATTCAGGTAGAAAGGGATAAACTAAACAAATATGGACGTCCCCTACTGGGATGTACAATCAAGCCAAAATTGGGCTTGTCTGCCAAAAATTATGGTAGAGCAGTTTATGAATGCCTTCGTGGTGGACTTGATTTCACGAAAGATGATGAAAACGTGAATTCCCAACCTTTCATGCGTTGGAGAGACCGCTTCTTATTTGTAGCAGAAGCCCTTTTTAAAGCCCAGGCGGAAACGGGTGAAATCAAGGGACATTATTTAAATGCCACTGCAGGCACCTGTGAAGAGATGATGAAGAGAGCTGTTTTCGCCAGAGAATTGGGTGCGCCAATCGTCATGCATGACTACTTGACTGGGGGATTTACCGCAAATACCAGCTTAGCATTATATTGCAGAGACAACGGACTACTTCTTCACATTCACCGGGCGATGCATGCTGTCATCGATAGACAACGAAATCACGGTATGCATTTCCGTGTATTAGCCAAAGCATTGCGCATGTCTGGTGGGGATCATGTCCATGCCGGAACTGTAGTGGGCAAATTAGAAGGTGAACGAGAAGTTACCCTGGGATTTGTCGACTTACTTCGCGACGATTATATTGAAAAGGATCGTAGCCGCGGCATCTATTTTACCCAAGATTGGGTATCCATGCCAGGTGTACTGCCCGTAGCTTCGGGTGGTATTCACGTCTGGCACATGCCTGCCCTAACCGAAATCTTCGGGGACGATTCTGTCTTACAATTCGGCGGGGGAACGTTGGGACATCCCTGGGGAAATGCACCCGGTGCTGTAGCTAACCGAGTTGCGGTGGAGGCTTGCGTACAAGCTCGTAACGAGCTGAGCTATAGCCCTTGACAAAATTGTTCATGTAACAAATATTCTATCCGTGACAACTAATTTATGTCAAGTCAATCAGTTGAAAGAAAAAATATTGAACCAGCAACTT----CTTATGTAACATGAACTTGCTTCCGGCCATTTCTCGTAGGTATAA----------TATATATATACAGGTGAACATACACAGATAAATACATTTAAAAATATCTGAATCTATGTTATATACAGCAATATGAATCCCACATCT------GAGTAGGTGGGAATGATGACATTGGTGCGTAGGAAGGTGGCGGAGAC HAPLOTYPE_C TTGACTTATTACACTCCCGAATACAAGACCAAAGATACTGATATCTTAGCGGCTTTCCGAATGACCCCACAACCTGGAGTACCGGCTGAGGAGGCCGGAGCTGCAGTAGCTGCGGAATCCTCTACGGGTACCTGGACCACAGTATGGACAGACGGACTTACCAGTCTCGATCGCTACAAGGGCCGGTGTTACGATATTGAGCCCGTCGCTGGGGAGGAAAATCAGTATATTGCGTATGTAGCTTATCCCCTGGATTTATTCGAGGAAGGTTCCGTCACCAATATGCTGACTTCCATTGTAGGTAATGTTTTTGGATTCAAGGCCCTACGCGCTCTGCGTCTGGAAGACCTACGAATTCCTCCTGCGTATTCCAAAACTTTTCAAGGACCCCCACACGGCATTCAGGTAGAAAGGGATAAACTAAACAAATATGGACGTCCCCTACTGGGATGTACAATCAAGCCAAAATTGGGCTTGTCTGCCAAAAATTATGGTAGAGCAGTTTATGAATGCCTTCGTGGTGGACTTGATTTCACGAAAGATGATGAAAACGTGAATTCCCAACCTTTCATGCGTTGGAGAGACCGCTTCTTATTTGTAGCAGAAGCCCTTTTTAAAGCCCAGGCGGAAACGGGTGAAATCAAGGGACATTATTTAAATGCCACTGCAGGCACCTGTGAAGAGATGATGAAGAGGGCTGTTTTCGCCAGAGAATTGGGTGCGCCAATCGTCATGCATGACTACTTGACTGGGGGATTTACCGCAAATACCAGCTTAGCATTATATTGCAGAGACAACGGACTACTTCTTCACATTCACCGGGCGATGCATGCTGTCATCGATAGACAACGAAATCACGGTATGCATTTCCGTGTATTAGCCAAAGCATTGCGCATGTCTGGTGGGGATCATGTCCATGCCGGAACTGTAGTGGGCAAATTAGAAGGTGAACGAGAAGTTACCCTGGGATTTGTCGACTTACTTCGCGACGATTATATTGAAAAGGATCGTAGCCGCGGCATCTATTTTACCCAAGATTGGGTATCCATGCCAGGTGTACTGCCCGTAGCTTCGGGTGGTATTCACGTCTGGCACATGCCTGCCCTAACCGAAATCTTCGGGGACGATTCTGTCTTACAATTCGGCGGGGGAACGTTGGGACATCCCTGGGGAAATGCACCCGGTGCTGTAGCTAACCGAGTTGCGGTGGAGGCTTGCGTACAAGCTCGTAACGAGCTGAGCTATAGCCCTTGACAAAATTGTTCATGTAACAAATATTCTATCCGTGACAACTAATTTATGTCAAGTCAATCAGTTGAAAGAAAAAATATTGAACCAGCAACTT----CTTATGTAACATGAACTTGCTTCCGGCCATTTCTCGTAGGTATAA----------TATATATATACAGGTGAACATACACAGATAAATACATTTAAAAATATCTGAATCTATGTTATATACAGCAATATGAATCCCACATCT------GAGTAGGTGGGAATGATGACATTGGTGCGTAGGAAGGTGGCGGAGAC HAPLOTYPE_D TTGACTTATTACACTCCCGAATACAAGACCAAAGATACTGATATCTTAGCGGCTTTCCGAATGACCCCACAACCTGGAGTACCGGCTGAGGAGGCCGGAGCTGCAGTAGCTGCGGAATCCTCTACGGGTACCTGGACCACAGTATGGACAGACGGACTTACCAGTCTCGATCGCTACAAGGGCCGGTGTTACGATATTGAGCCCGTCGCTGGGGAGGAAAATCAGTATATTGCGTATGTAGCTTATCCCCTGGATTTATTCGAGGAAGGTTCCGTCACCAATATGCTGACTTCCATTGTAGGTAATGTTTTTGGATTCAAGGCCCTACGCGCTCTGCGTCTGGAAGACCTACGAATTCCTCCTGCGTATTCCAAAACTTTTCAAGGACCCCCACACGGCATTCAGGTAGAAAGGGATAAACTAAACAAATATGGACGTCCCCTACTGGGATGTACAATCAAGCCAAAATTGGGCTTGTCTGCCAAAAATTATGGTAGAGCAGTTTATGAATGCCTTCGTGGTGGACTTGATTTCACGAAAGATGATGAAAACGTGAATTCCCAACCTTTCATGCGTTGGAGAGACCGCTTCTTATTTGTAGCAGAAGCCCTTTTTAAAGCCCAGGCGGAAACGGGTGAAATCAAGGGACATTATTTAAATGCCACTGCAGGCACCTGTGAAGAGATGTTGAAGAGAGCTGTTTTCGCCAGAGAATTGGGTGCGCCAATCGTCATGCATGACTACTTGACTGGGGGATTTACCGCAAATACCAGCTTAGCATTTTATTGCAGAGACAACGGACTACTTCTTCACATTCACCGGGCGATGCATGCTGTCATCGATAGACAACGAAATCACGGTATGCATTTCCGTGTATTAGCCAAAGCATTGCGCATGTCTGGTGGGGATCATGTCCATGCCGGAACTGTAGTGGGCAAATTAGAAGGTGAACGAGAAGTTACCCTGGGATTTGTCGACTTACTTCGCGACGATTATATTGAAAAGGATCGTAGCCGCGGCATCTATTTTACCCAAGATTGGGTATCCATGCCAGGTGTACTGCCCGTAGCTTCGGGTGGTATTCACGTCTGGCACATGCCTGCCCTAACCGAAATCTTCGGGGACGATTCTGTCTTACAATTCGGCGGGGGAACGTTGGGACATCCCTGGGGAAATGCACCCGGTGCTGTAGCTAACCGAGTTGCGGTGGAGGCTTGCGTACAGGCTCGTAACGAGCTGAGCTATAGCCCTTGACAAAATTGTTCATGTAACAAATATTCTATCCGTGACAACTAATTTATGTCAAGTCAATCAGTTGAAAGAAAAAATATTGAACCAGCAACTT----CTTATGTAACATGAACTTGCTTCCGGCCATTTCTCGTAGGTATAA----------TATATATATACAGGTGAACATACACAGATAGATACATATAAAAATATCTGAATCTATGTTATATACGGCAATATGAATCCCACATCTGA----GAGTAGGTGGGAATGATGACATTGGTGCGTAGGAAGGTGGCGGAGAC HAPLOTYPE_E TTGACTTATTACACTCCCGAATACAAGACCAAAGATACTGATATCTTAGCGGCTTTCCGAATGACCCCACAACCTGGAGTACCGGCTGAGGAGGCCGGAGCTGCAGTAGCTGCGGAATCCTCTACGGGTACCTGGACCACAGTATGGACAGACGGACTTACCAGTCTCGATCGCTACAAGGGCCGGTGTTACGATATTGAGCCCGTCGCTGGGGAGGAAAATCAGTATATTGCGTATGTAGCTTATCCCCTGGATTTATTCGAGGAAGGTTCCGTCACCAATATGCTGACTTCCATTGTAGGTAATGTTTTTGGATTCAAGGCCCTACGCGCTCTGCGTCTGGAAGACCTACGAATTCCTCCTGCGTATTCCAAAACTTTTCAAGGACCCCCACACGGCATTCAGGTAGAAAGGGATAAACTAAACAAATATGGACGTCCCCTACTGGGATGTACAATCAAGCCAAAATTGGGCTTGTCTGCCAAAAATTATGGTAGAGCAGTTTATGAATGCCTTCGTGGTGGACTTGATTTCACGAAAGATGATGAAAACGTGAATTCCCAACCTTTCATGCGTTGGAGAGACCGCTTCTTATTTGTAGCAGAAGCCCTTTTTAAAGCCCAGGCGGAAACGGGTGAAATAAAGGGACATTATTTAAATGCCACTGCAGGCACCTGTGAAGAGATGATGAAGAGAGCTGTTTTCGCCAGAGAATTGGGTGCGCCAATCGTCATGCATGACTACTTGACTGGGGGATTTACCGCAAATACCAGCTTAGCACATTATTGCAGAGACAACGGACTACTTCTTCACATTCACCGGGCGATGCATGCTGTCATCGATAGACAACGAAATCACGGTATGCATTTCCGTGTATTAGCCAAAGCATTGCGCATGTCTGGTGGGGATCATGTCCATGCCGGAACTGTAGTGGGCAAATTAGAAGGTGAACGAGAAGTTACCCTGGGATTTGTCGACTTACTTCGCGACGATTATATTGAAAAGGATCGTAGCCGCGGCATCTATTTTACCCAAGATTGGGTATCCATGCCAGGTGTACTGCCCGTAGCTTCGGGTGGTATTCACGTCTGGCACATGCCTGCCCTAACCGAAATCTTCGGGGACGATTCTGTCTTACAATTCGGCGGGGGAACGTTGGGACATCCCTGGGGAAATGCACCCGGTGCTGTAGCTAACCGAGTTGCGGTGGAGGCTTGCGTACAGGCTCGTAACGAGCTGAGCTATAGCCCTTGACAAAATTGTTCATGTAACAAATATTCTATCCGTGACAACTAATTTATGTCAAGTCAATCAGTTGAAAGAAAAAATATTGAACCAGCAACTT----CTTATGTAACATGAACTTGCTTCCGGCCATTTCTCGTAGGTATAA------TATATATATATATACAGGTGAACATACACAGATAGATACATATAAAAATATCTGAATCTATGTTATATACAGCAATATGAATCCCACATCT------GAGTAGGTGGGAATGATGACATTGGTGCGTAGGAAGGTGGCGGAGAC HAPLOTYPE_F TTGACTTATTACACTCCCGAATACAAGACCAAAGATACTGATATCTTAGCGGCTTTCCGAATGACCCCACAACCTGGAGTACCGGCTGAGGAGGCCGGAGCTGCAGTAGCTGCGGAATCCTCTACGGGTACCTGGACCACAGTATGGACAGACGGACTTACCAGTCTCGATCGCTACAAGGGCCGGTGTTACGATATTGAGCCCGTCGCTGGGGAGGAAAATCAGTATATTGCGTATGTAGCTTATCCCCTGGATTTATTCGAGGAAGGTTCCGTCACCAATATGCTGACTTCCATTGTAGGTAATGTTTTTGGATTCAAGGCCCTACGCGCTCTGCGTCTGGAAGACCTACGAATTCCTCCTGCGTATTCCAAAACTTTTCAAGGACCCCCACACGGCATTCAGGTAGAAAGGGATAAACTAAACAAATATGGACGTCCCCTACTGGGATGTACAATCAAGCCAAAATTGGGCTTGTCTGCCAAAAATTATGGTAGAGCAGTTTATGAATGCCTTCGTGGTGGACTTGATTTCACGAAAGATGATGAAAATGTGAATTCCCAACCTTTCATGCGTTGGAGAGACCGCTTCTTATTTGTAGCAGAAGCCCTTTTTAAAGCCCAGGCGGAAACGGGTGAAATAAAGGGACATTATTTAAATGCCACTGCAGGCACCTGTGAAGAGATGATGAAGAGAGCTGTTTTCGCCAGAGAATTGGGTGCGCCAATCGTCATGCATGACTACTTGACTGGGGGATTTACCGCAAATACCAGCTTAGCACATTATTGCAGAGACAACGGACTACTTCTTCACATTCACCGGGCGATGCATGCTGTCATCGATAGACAACGAAATCACGGTATGCATTTCCGTGTATTAGCCAAAGCATTGCGCATGTCTGGTGGGGATCATGTCCATGCCGGAACTGTAGTGGGCAAATTAGAAGGTGAACGAGAAGTTACCCTGGGATTTGTCGACTTACTTCGCGACGATTATATTGAAAAGGATCGTAGCCGCGGCATCTATTTTACCCAAGATTGGGTATCCATGCCAGGTGTACTGCCCGTAGCTTCGGGTGGTATTCACGTCTGGCACATGCCTGCCCTAACCGAAATCTTCGGGGACGATTCTGTCTTACAATTCGGCGGGGGAACGTTGGGACATCCCTGGGGAAATGCACCCGGTGCTGTAGCTAACCGAGTTGCGGTGGAGGCTTGCGTACAGGCTCGTAACGAGCTGAGCTATAGCCCTTGACAAAATTGTTCATGTAACAAATATTCTATCCGTGACAACTAATTTATGTCAAGTCAATCAGTTGAAAGAAAAAATATTGAACCAGCAACTT----CTTATGTAACATGAACTTGCTTCCGGCCATTTCTCGTAGGTATAA------TATATATATATATACAGGTGAACATACACAGATAGATACATATAAAAATATCTGAATCTATGTTATATACAGCAATATGAATCCCACATCT------GAGTAGGTGGGAATGATGACATTGGTGCGTAGGAAGGTGGCGGAGAC HAPLOTYPE_G TTGACTTATTACACTCCCGAATACAAGACCAAAGATACTGATATCTTAGCGGCTTTCCGAATGACCCCACAACCTGGAGTACCGGCTGAGGAGGCCGGAGCTGCAGTAGCTGCGGAATCCTCTACGGGTACCTGGACCACAGTATGGACAGACGGACTTACCAGTCTCGATCGCTACAAGGGCCGGTGTTACGATATTGAGCCCGTCGCTGGGGAGGAAAATCAGTATATTGCGTATGTAGCTTATCCCCTGGATTTATTCGAGGAAGGTTCCGTCACCAATATGCTGACTTCCATTGTAGGTAATGTTTTTGGATTCAAGGCCCTACGCGCTCTGCGTCTGGAAGACCTACGAATTCCTCCTGCGTATTCCAAAACTTTTCAAGGACCCCCACACGGCATTCAGGTAGAAAGGGATAAACTAAACAAATATGGACGTCCCCTACTGGGATGTACAATCAAGCCAAAATTGGGCTTGTCTGCCAAAAATTATGGTAGAGCAGTTTATGAATGCCTTCGTGGTGGACTTGATTTCACGAAAGATGATGAAAACGTGAATTCCCAACCTTTCATGCGTTGGAGAGACCGCTTCTTATTTGTAGCAGAAGCCCTTTTTAAAGCCCAGGCGGAAACGGGTGAAATAAAGGGACATTATTTAAATGCCACTGCAGGCACCTGTGAAGAGATGATGAAGAGAGCTGTTTTCGCCAGAGAATTGGGTGCGCCAATCGTCATGCATGACTACTTGACTGGGGGATTTACCGCAAATACCAGCTTAGCACATTATTGCAGAGACAACGGACTACTTCTTCACATTCACCGAGCGATGCATGCTGTCATCGATAGACAACGAAATCACGGTATGCATTTCCGTGTATTAGCCAAAGCATTGCGCATGTCTGGTGGGGATCATGTCCATGCCGGAACTGTAGTGGGCAAATTAGAAGGTGAACGAGAAGTTACCCTGGGATTTGTCGACTTACTTCGCGACGATTATATTGAAAAGGATCGTAGCCGCGGCATCTATTTTACCCAAGATTGGGTATCCATGCCAGGTGTACTGCCCGTAGCTTCGGGTGGTATTCACGTCTGGCACATGCCTGCCCTAACCGAAATCTTCGGGGACGATTCTGTCTTACAATTCGGCGGGGGAACGTTGGGACATCCCTGGGGAAATGCACCCGGTGCTGTAGCTAACCGAGTTGCGGTGGAGGCTTGCGTACAGGCTCGTAACGAGCTGAGCTATAGCCCTTGACAAAATTGTTCATGTAACAAATATTCTATCCGTGACAACTAATTTATGTCAAGTCAATCAGTTGAAAGAAAAAATATTGAACCAGCAACTT----CTTATGTAACATGAACTTGCTTCCGGCCATTTCTCGTAGGTATAA------TATATATATATATACAGGTGAACATACACAGATAGATACATATAAAAATATCTGAATCTATGTTATATACAGCAATATGAATCCCACATCT------GAGTAGGTGGGAATGATGACATTGGTGCGTAGGAAGGTGGCGGAGAC HAPLOTYPE_H TTGACTTATTACACTCCCGAATACAAGACCAAAGATACTGATATCTTAGCGGCTTTCCGAATGACCCCACAACCTGGAGTACCGGCTGAGGAGGCCGGAGCTGCAGTAGCTGCGGAATCCTCTACGGGTACCTGGACCACAGTATGGACAGACGGACTTACCAGTCTCGATCGCTACAAGGGCCGGTGTTACGATATTGAGCCCGTCGCTGGGGAGGAAAATCAGTATATTGCGTATGTAGCTTATCCTCTGGATTTATTCGAGGAAGGTTCCGTCACCAATATGCTGACTTCCATTGTAGGTAATGTTTTTGGATTCAAGGCCCTACGCGCTCTGCGTCTGGAAGACCTACGAATTCCTCCTGCGTATTCCAAAACTTTTCAAGGACCCCCACACGGCATTCAGGTAGAAAGGGATAAACTAAACAAATATGGACGTCCCCTACTGGGATGTACAATCAAGCCAAAATTGGGCTTGTCTGCCAAAAATTATGGTAGAGCAGTTTATGAATGCCTTCGTGGTGGACTTGATTTCACGAAAGATGATGAAAACGTGAATTCCCAACCTTTCATGCGTTGGAGAGACCGCTTCTTATTTGTAGCAGAAGCCCTTTTTAAAGCCCAGGCGGAAACGGGTGAAATCAAGGGACATTATTTAAATGCCACTGCAGGCACCTGTGAAGAGATGTTGAAGAGAGCTGTTTTCGCCAGAGAATTGGGTGCACCAATCGTCATGCATGACTACTTGACTGGGGGATTTACCGCAAATACCAGCTTAGCACATTATTGCAGAGACAACGGACTACTTCTTCACATTCACCGGGCGATGCATGCTGTCATCGATAGACAACGGAATCACGGTATGCATTTCCGTGTATTAGCCAAAGGATTGCGCATGTCTGGTGGGGATCATATCCATGCCGGAACTGTAGTGGGCAAATTAGAAGGTGAACGAGAAGTTACCCTGGGATTTGTCGACTTACTTCGCGACGATTATATTGAAAAGGATCGTAGCCGCGGCATCTATTTTACCCAAGATTGGGTATCCATGCCAGGTGTACTGCCCGTAGCTTCGGGTGGTATTCACGTCTGGCACATGCCTGCCCTAACCGAAATCTTCGGGGACGATTCTGTCTTACAATTCGGCGGGGGAACGTTGGGACATCCCTGGGGAAATGCACCCGGTGCTGTAGCTAACCGAGTTGCGTTGGAGGCTTGCGTACAGGCTCGTAACGAGCTGAGCTATAGCCCTTGACAAAATTGTTCATGTAACAAATATTCTATCCGTGACAACTAATTTATGTCAAGTCAATCAGTTGAAAGAAAAAATATTGAACCAGCAACTT----TTGATGTAACATGAACTTGCTTCCGGCCATTTCTCGTAGGTATAATAAATATATGTATATATATACAGGTGAACGGACACAGATAGATACATATAAATATATCTGAATCTATGTTATATACAGCAATATGAATCCCACATCT------GAGTAGGTGGGAATGATG-CATTGGTGCGTAGGAAGGTGGCGGAGAC HAPLOTYPE_I TTGACTTATTACACTCCCGAATACAAGACCAAAGATACTGATATCTTAGCGGCTTTCCGAATGACCCCACAACCTGGAGTACCGGCTGAGGAGGCCGGAGCTGCAGTAGCTGCGGAATCCTCTACGGGTACCTGGACCACAGTATGGACAGACGGACTTACCAGTCTCGATCGCTACAAGGGCCGGTGTTACGATATTGAGCCCGTCGCTGGGGAGGAAAATCAGTATATTGCGTATGTAGCTTATCCTCTGGATTTATTCGAGGAAGGTTCCGTCACCAATATGCTGACTTCCATTGTAGGTAATGTTTTTGGATTCAAGGCCCTACGCGCTCTGCGTCTGGAAGACCTACGAATTCCTCCTGCGTATTCCAAAACTTTTCAAGGACCCCCACACGGCATTCAGGTAGAAAGGGATAAACTAAACAAATATGGACGTCCCCTACTGGGATGTACAATCAAGCCAAAATTGGGCTTGTCTGCCAAAAATTATGGTAGAGCAGTTTATGAATGCCTTCGTGGTGGACTTGATTTCACGAAAGATGATGAAAACGTGAATTCCCAACCTTTCATGCGTTGGAGAGACCGCTTCTTATTTGTAGCAGAAGCCCTTTTTAAAGCCCAGGCGGAAACGGGTGAAATCAAGGGACATTATTTAAATGCCACTGCAGGCACCTGTGAAGAGATGTTGAAGAGAGCTGTTTTCGCCAGAGAATTGGGTGCACCAATCGTCATGCATGACTACTTGACTGGGGGATTTACCGCAAATACCAGCTTAGCACATTATTGCAGAGACAACGGACTACTTCTTCACATTCACCGGGCGATGCATGCTGTCATCGATAGACAACGGAATCACGGTATGCATTTCCGTGTATTAGCCAAAGGATTGCGCATGTCTGGTGGGGATCATATCCATGCCGGAACTGTAGTGGGCAAATTAGAAGGTGAACGAGAAGTTACCCTGGGATTTGTCGACTTACTTCGCGACGATTATATTGAAAAGGATCGTAGCCGCGGCATCTATTTTACCCAAGATTGGGTATCCATGCCAGGTGTACTGCCCGTAGCTTCGGGTGGTATTCACGTCTGGCACATGCCTGCCCTAACCGAAATCTTCGGGGACGATTCTGTCTTACAATTCGGCGGGGGAACGTTGGGACATCCCTGGGGAAATGCACCCGGTGCTGTAGCTAACCGAGTTGCGTTGGAGGCTTGCGTACAGGCTCGTAACGAGCTGAGCTATAGCCCTTGACAAAATTGTTCATGTAACAAATATTCTATCCGTGACAACTAATTTATGTCAAGTCAATCAGTTGAAAGAAAAAATATTGAACCAGCAACTT----TTGATGTAACATGAACTTGCTTCCGGCCATTTCTCGTAGGTATAATAAATATATGTATATATATAAAGGTGAACGGACACAGATAGATACATATAAATATATCTGAATCTATGTTATATACAGCAATATGAATCCCACATCT------GAGTAGGTGGGAATGATG-CATTGGTGCGTAGGAAGGTGGCGGAGAC HAPLOTYPE_J TTGACTTATTACACTCCCGAATACAAGACCAAAGATACTGATATCTTAGCGGCTTTCCGAATGACCCCACAACCTGGAGTACCGGCTGAGGAGGCCGGAGCTGCAGTAGCTGCGGAATCCTCTACGGGTACCTGGACCACAGTATGGACAGACGGACTTACCAGTCTCGATCGCTACAAGGGCCGGTGTTACGATATTGAGCCCGTCGCTGGGGAGGAAAATCAGTATATTGCGTATGTAGCTTATCCCCTGGATTTATTCGAGGAAGGTTCCGTCACCAATATGCTGACTTCCATTGTAGGTAATGTTTTTGGATTCAAGGCCCTACGCGCTCTGCGTCTGGAAGACCTACGAATTCCTCCTGCGTATTCCAAAACTTTTCAAGGACCCCCACACGGCATTCAGGTAGAAAGGGATAAACTAAACAAATATGGACGTCCCCTACTGGGATGTACAATCAAGCCAAAATTGGGCTTGTCTGCCAAAAATTATGGTAGAGCAGTTTATGAATGCCTTCGTGGTGGACTTGATTTCACGAAAGATGATGAAAACGTGAATTCCCAACCTTTCATGCGTTGGAGAGACCGCTTCTTATTTGTAGCAGAAGCCCTTTTTAAAGCCCAGGCGGAAACGGGTGAAATCAAGGGACATTATTTAAATGCCACTGCAGGCACCTGTGAAGAGATGATGAAGAGAGCTGTTTTCGCCAGAGAATTGGGTGCGCCAATCGTCATGCATGACTACTTGACTGGGGGATTTACCGCAAATACCAGCTTAGCATTTTATTGCAGAGACAACGGACTACTTCTTCACATTCACCGGGCGATGCATGCTGTCATCGATAGACAACGAAATCACGGTATGCATTTCCGTGTATTAGCCAAAGCATTGCGCATGTCTGGTGGGGATCATGTCCATGCCGGAACTGTAGTGGGCAAATTAGAAGGTGAACGAGAAGTTACCCTGGGATTTGTCGACTTACTTCGCGACGATTATATTGAAAAGGATCGTAGCCGCGGCATCTATTTTACCCAAGATTGGGTATCCATGCCAGGTGTACTGCCCGTAGCTTCGGGTGGTATTCACGTCTGGCACATGCCTGCCCTAACCGAAATCTTCGGGGACGATTCTGTCTTACAATTCGGCGGGGGAACGTTGGGACATCCCTGGGGAAATGCACCCGGTGCTGTAGCTAACCGAGTTGCGGTGGAGGCTTGCGTACAGGCTCGTAACGAGCTGAGCTATAGCCCTTGACAAAATTGTTCATGTAACAAATATTCTATCCGTGACAACTAATTTATGTCAAGTCAATCAGTTGAAAGAAAAAATATTGAACCAGCAACTT----ATTATGTAACATGAACTTGCTTCCGGCCATTTCTCGTAGGTATAA--------TATATATATATACAGGTGAACATACACAGATAGATACATATAAAAATATCTGAATCTATGTTATAGACAGCAATATGAATCCCACATCT------GAGTAGGTGGGAATGATGACATTGGTGCGTAGGAAGGTGGCGGAGAC HAPLOTYPE_K TTGACTTATTACACTCCCGAATACAAGACCAAAGATACTGATATCTTAGCGGCTTTCCGAATGACCCCACAACCTGGAGTACCGGCTGAGGAGGCCGGAGCTGCAGTAGCTGCGGAATCCTCTACGGGTACCTGGACCACAGTATGGACAGACGGACTTACCAGTCTCGATCGCTACAAGGGCCGGTGTTACGATATTGAGCCCGTCGCTGGGGAGGAAAATCAGTATATTGCGTATGTAGCTTATCCCCTGGATTTATTCGAGGAAGGTTCCGTCACCAATATGCTGACTTCCATTGTAGGTAATGTTTTTGGATTCAAGGCCCTACGCGCTCTGCGTCTGGAAGACCTACGAATTCCTCCTGCGTATTCCAAAACTTTTCAAGGACCCCCACACGGCATTCAGGTAGAAAGGGATAAACTAAACAAATATGGACGTCCCCTACTGGGATGTACAATCAAGCCAAAATTGGGCTTGTCTGCCAAAAATTATGGTAGAGCAGTTTATGAATGCCTTCGTGGTGGACTTGATTTCACGAAAGATGATGAAAACGTGAATTCCCAACCTTTCATGCGTTGGAGAGACCGCTTCTTATTTGTAGCAGAAGCCCTTTTTAAAGCCCAGGCGGAAACGGGTGAAATCAAGGGACATTATTTAAATGCCACTGCAGGCACCTGTGAAGAGATGATGAAGAGAGCTGTTTTCGCCAGAGAATTGGGTGCGCCAATCGTCATGCATGACTACTTGACTGGGGGATTTACCGCAAATACCAGCTTAGCATTTTATTGCAGAGACAACGGACTACTTCTTCACATTCACCGGGCGATGCATGCTGTCATCGATAGACAACGAAATCACGGTATGCATTTCCGTGTATTAGCCAAAGCATTGCGCATGTCTGGTGGGGATCATGTCCATGCCGGAACTGTAGTGGGCAAATTAGAAGGTGAACGAGAAGTTACCCTGGGATTTGTCGACTTACTTCGCGACGATTATATTGAAAAGGATCGTAGCCGCGGCATCTATTTTACCCAAGATTGGGTATCCATGCCAGGTGTACTGCCCGTAGCTTCGGGTGGTATTCACGTCTGGCACATGCCTGCCCTAACCGAAATCTTCGGGGACGATTCTGTCTTACAATTCGGCGGGGGAACGTTGGGACATCCCTGGGGAAATGCACCCGGTGCTGTAGCTAACCGAGTTGCGGTGGAGGCTTGCGTACAGGCTCGTAACGAGCTGAGCTATAGCCCTTGACAAAATTGTTCATGTAACAAATATTCTATCCGTGACAACTAATTTATGTCAAGTCAATCAGTTGAAAGAAAAAATATTGAACCAGCAACTT----ATTATGTAACATGAACTTGCTTCCGGCCATTTCTCGTAGGTATAA----------TATATATATACAGGTGAACATACACAGATAGATACATATAAAAATATCTGAATCTATGTTATAGACAGCAATATGAATCCCACATCT------GAGTAGGTGGGAATGATGACATTGGTGCGTAGGAAGGTGGCGGAGAC HAPLOTYPE_L TTGACTTATTACACTCCCGAATACAAGACCAAGGATACTGATATCTTAGCGGCTTTCCGAATGACCCCACAACCTGGAGTACCGGCTGAGGAGGCCGGAGCTGCAGTAGCTGCGGAATCCTCTACGGGTACCTGGACCACAGTATGGACAGACGGACTTACCAGTCTCGATCGCTACAAGGGCCGGTGTTACGATATTGAGCCCGTCGCTGGGGAGGAAAATCAGTATATTGCGTATGTAGCTTATCCTCTGGATTTATTCGAGGAAGGTTCCGTCACCAATATGCTGACTTCCATTGTAGGTAATGTTTTTGGATTCAAGGCCCTACGCGCTCTGCGTCTGGAAGACCTACGAATTCCTCCTGCATATTCCAAAACTTTTATAGGACCCCCACACGGCATTCAGGTAGAAAGGGATAAACTAAACAAATATGGACGTCCCCTACTGGGATGTACAATCAAGCCAAAATTGGGCTTGTCTGCCAAAAATTATGGTAGAGCAGTTTATGAATGCCTTCGTGGTGGACTTGATTTCACGAAAGATGATGAAAACGTGAATTCCCAACCTTTCATGCGTTGGAGAGACCGATTCTTATTTGTAGCAGAAGCCCTTTTTAAAGCCCAGGCGGAAACGGGTGAAATCAAGGGACATTATTTAAATGCCACTGCAGGCACCTGTGAAGAGATGATGAAGAGAGCTGTTTTCGCCAGAGAATTGGGTGCACCAATCGTCATGCATGACTACTTGACTGGGGGATTTACCGCAAATACCAGCTTAGCATATTATTGCAGAGACAACGGACTACTTCTTCACATTCACCGGGCGATGCATGCTGTCATCGATAGACAACGGAATCACGGTATGCATTTCCGTGTATTAGCCAAAGCATTGCGCATGTCTGGTGGGGATCATGTCCATGCCGGAACTGTAGTGGGCAAATTAGAAGGTGAACGAGACGTTACCCTGGGATTTGTCGACTTACTTCGCGACGATTATATTGAAAAGGATCGTAGCCGCGGCGTCTATTTTACTCAAGATTGGGTATCCATGCCAGGTGTACTGCCCGTAGCTTCGGGTGGTATTCACGTCTGGCACATGCCTGCCCTAACCGAAATCTTCGGGGACGATGCTGTCTTACAATTCGGTGGGGGAACGTTGGGACATCCCTGGGGAAATGCGCCCGGTGCTGTAGCTAACCGAGTTGCGTTGGAGGCTTGCGTACAGGCTCGTAACGAGCTGAGCTATAGCCCTTGACAAAATTGTTCATGTAACAAATATTCTATCCGTGACAACTAATTTATGTCAAGTCAATCAGTTGAAAGAAAAAATATTGAACCAGCAACTT----CTGATGTAACATGAACTTGCTTCCGGCCATTTCTCGTAGGTATAATAAA------TATATATATACAGGCGAACGTACACAGATAGATACATATAAATATATCTGAATCTATCTTATATACAGCAATATGAATCCCACATCTGAGTATGAGTAGGTGGAAATGATGACATTGGTGCGTAGGAAGGTGGCGGAGAC HAPLOTYPE_M TTGACTTATTACACTCCCGAATACAAGACCAAGGATACTGATATCTTAGCGGCTTTCCGAATGACCCCACAACCTGGAGTACCGGCTGAGGAGGCCGGAGCTGCAGTAGCTGCGGAATCCTCTACGGGTACCTGGACCACAGTATGGACAGATGGACTTACCAGTCTCGATCGCTACAAGGGCCGGTGTTACGATATTGAGCCCGTCGCTGGGGAGGAAAATCAGTATATTGCGTATGTAGCTTATCCTCTGGATTTATTCGAGGAAGGTTCCGTCACCAATATGCTGACTTCCATTGTAGGTAATGTTTTTGGATTCAAGGCCCTACGCGCTCTGCGTCTGGAAGACCTACGAATTCCTCCTGCATATTCCAAAACTTTTATAGGACCCCCACACGGCATTCAGGTAGAAAGGGATAAACTAAACAAATATGGACGTCCCCTACTGGGATGTACAATCAAGCCAAAATTGGGCTTGTCTGCCAAAAATTATGGTAGAGCAGTTTATGAATGCCTTCGTGGTGGACTTGATTTCACGAAAGATGATGAAAACGTGAATTCCCAACCTTTCATGCGTTGGAGAGACCGATTCTTATTTGTAGCAGAAGCCCTTTTTAAAGCCCAGGCGGAAACGGGTGAAATCAAGGGACATTATTTAAATGCCACTGCAGGCACCTGTGAAGAGATGATGAAGAGAGCTGTTTTCGCCAGAGAATTGGGTGCACCAATCGTCATGCATGACTACTTGACTGGGGGATTTACCGCAAATACCAGCTTAGCATATTATTGCAGAGACAACGGACTACTTCTTCACATTCACCGGGCGATGCATGCTGTCATCGATAGACAACGGAATCACGGTATGCATTTCCGTGTATTAGCCAAAGCATTGCGCATGTCTGGTGGGGATCATGTCCATGCCGGAACTGTAGTGGGCAAATTAGAAGGTGAACGAGACGTTACCCTGGGATTTGTCGACTTACTTCGCGACGATTATATTGAAAAGGATCGTAGCCGCGGCGTCTATTTTACTCAAGATTGGGTATCCATGCCAGGTGTACTGCCCGTAGCTTCGGGTGGTATTCACGTCTGGCACATGCCTGCCCTAACCGAAATCTTCGGGGACGATGCTGTCTTACAATTCGGTGGGGGAACGTTGGGACATCCCTGGGGAAATGCGCCCGGTGCTGTAGCTAACCGAGTTGCGTTGGAGGCTTGCGTACAGGCTCGTAACGAGCTGAGCTATAGCCCTTGACAAAATTGTTCATGTAACAAATATTCTATCCGTGACAACTAATTTATGTCAAGTCAATCAGTTGAAAGAAAAAATATTGAACCAGCAACTT----CTGATGTAACATGAACTTGCTTCCGGCCATTTCTCGTAGGTATAATAAA------TATATATATACAGGCGAACGTACACAGATAGATACATATAAATATATCTGAATCTATCTTATATACAGCAATATGAATCCCACATCTGAGTATGAGTAGGTGGAAATGATGACATTGGTGCGTAGGAAGGTGGCGGAGAC HAPLOTYPE_N TTGACTTATTACACTCCCGAATACAAGACCAAGGATACTGATATCTTAGCGGCTTTCCGAATGACCCCACAACCTGGAGTACCGGCTGAGGAGGCCGGAGCTGCAGTAGCTGCGGAATCCTCTACGGGTACCTGGACCACAGTATGGACAGACGGACTTACCAGTCTCGATCGCTACAAGGGCCGGTGTTACGATATTGAGCCCGTCGCTGGGGAGGAAAATCAGTATATTGCGTATGTAGCTTATCCTCTGGATTTATTCGAGGAAGGTTCCGTCACCAATATGCTGACTTCCATTGTAGGTAATGTTTTTGGATTCAAGGCCCTACGCGCTCTGCGTCTGGAAGACCTACGAATTCCTCCTGCATATTCCAAAACTTTTATAGGACCCCCACACGGCATTCAGGTAGAAAGGGATAAACTAAACAAATATGGACGTCCCCTACTGGGATGTACAATCAAGCCAAAATTGGGCTTGTCTGCCAAAAATTATGGTAGAGCAGTTTATGAATGCCTTCGTGGTGGACTTGATTTCACGAAAGATGATGAAAACGTGAATTCCCAACCTTTCATGCGTTGGAGAGACCGCTTCTTATTTGTAGCAGAAGCCCTTTTTAAAGCCCAGGCGGAAACGGGTGAAATCAAGGGACATTATTTAAATGCCACTGCAGGCACCTGTGAAGAGATGATGAAGAGAGCTGTTTTCGCCAGAGAATTGGGTGCACCAATCGTCATGCATGACTACTTGACTGGGGGATTTACCGCAAATACCAGCTTAGCATATTATTGCAGAGACAACGGACTACTTCTTCACATTCACCGGGCGATGCATGCTGTCATCGATAGACAACGGAATCACGGTATGCATTTCCGTGTATTAGCCAAAGCATTGCGCATGTCTGGTGGGGATCATGTCCATGCCGGAACTGTAGTGGGCAAATTAGAAGGTGAACGAGACGTTACCCTGGGATTTGTCGACTTACTTCGCGACGATTATATTGAAAAGGATCGTAGCCGCGGCGTCTATTTTACTCAAGATTGGGTATCCATGCCAGGTGTACTGCCCGTAGCTTCGGGTGGTATTCACGTCTGGCACATGCCTGCCCTAACCGAAATCTTCGGGGACGATGCTGTCTTACAATTCGGTGGGGGAACGTTGGGACATCCCTGGGGAAATGCACCCGGTGCTGTAGCTAACCGAGTTGCGTTGGAGGCTTGCGTACAGGCTCGTAACGAGCTGAGCTATAGCCCTTGACAAAATTGTTCATGTAACAAATATTCTATCCGTGACAACTAATTTATGTCAAGTCAATCAGTTGAAAGAAAAAATATTGAACCAGCAACTT----CTGATGTAACATGAACTTGCTTCCGGCCATTTCTCGTAGGTATAATAAA------TATATATATACAGGTGAACGTACACAGATAGATACATATAAATATATCTGAATCTATCTTATATACAGCAATATGAATCCCACATCT------GAGTAGGTGGAAATGATGACATTGGTGCGTAGGAAGGTGGCGGAGAC HAPLOTYPE_O TTGACTTATTACACTCCCGAATACAAGACCAAAGATACTGATATCTTAGCGGCTTTCCGAATGACCCCACAACCTGGAGTACCGGCTGAGGAGGCCGGAGCTGCAGTAGCTGCGGAATCTTCTACGGGTACCTGGACCACAGTATGGACAGACGGACTTACCAGTCTCGATCGCTACAAGGGCCGGTGTTACGATATTGAGCCCGTCGCTGGGGAGGAAAATCAGTATATTGCGTATGTAGCTTATCCTCTGGATTTATTCGAGGAAGGTTCCGTCACCAATATGCTGACTTCCATTGTAGGTAATGTTTTTGGATTCAAGGCCCTACGCGCTCTGCGTCTGGAAGACCTACGAATTCCTCCTGCGTATTCCAAAACTTTTCAAGGACCCCCACACGGCATTCAGGTAGAAAGGGATAAACTAAACAAATATGGACGTCCCCTACTGGGATGTACAATCAAGCCAAAATTGGGCTTGTCTGCCAAAAATTATGGTAGAGCAGTTTATGAATGCCTTCGTGGTGGACTTGATTTCACGAAAGATGATGAAAACGTGAATTCCCAACCTTTCATGCGTTGGAGAGACCGCTTCTTATTTGTAGCAGAAGCCCTTTTTAAAGCCCAGGCGGAAACGGGTGAAATCAAGGGACATTATTTAAATGCCACTGCAGGCACCTGGGAAGAGATGTTGAAGAGAGCTGTTTTCGCCAGAGAATTGGGTGCACCAATCGTCATGCATGACTACTTGACTGGGGGATTTACCGCAAATACCAGCTTAGCACATTATTGCAGAGACAACGGACTACTTCTTCACATTCACCGGGCGATGCATGCTGTCATCGATAGACAACGGAATCACGGTATGCATTTCCGTGTATTAGCCAAAGCATTGCGCATGTCTGGTGGGGATCATATCCATGCCGGAACTGTAGTGGGCAAATTAGAAGGTGAACGAGAAGTTACCCTGGGATTTGTCGACTTACTTCGCGACGATTATATTGAAAAGGATCGTAGCCGCGGCATCTATTTTACCCAAGATTGGGTATCCATGCCAGGTGTACTGCCCGTAGCTTCGGGTGGTATTCACGTCTGGCACATGCCTGCCCTAACCGAAATCTTCGGGGACGATTCTGTCTTACAATTCGGCGGGGGAACGTTGGGACATCCCTGGGGAAATGCACCCGGTGCTGTAGCTAACCGAGTTGCGTTGGAGGCTTGCGTACAGGCTCGTAACGAGCTGAGCTATAGCCCTTGACAAAATTGTTCATGTAACAAATATTCTATCCGTGACAACTAATTTATGTCAAGTCAATCAGTTGAAAGAAAAAATATTGAGCCAGCAACTT----CTGATGTAACATGAACTTGCTTCCGGCCATTTCTCGTAGGTATAATAAATATATG--TATATATACAGGTGAACGTACACAGATAGATACATATAAATATATCTGAATCTATGTTATATACAGCAATATGAATCCCACATCT------GAGTAGGTGGGAATGATG-CATTGGTGCGTAGGAAGGTGGCGGAGAC HAPLOTYPE_P TTGACTTATTACACTCCCGAATACAAGACCAAAGATACTGATATCTTAGCGGCTTTCCGAATGACCCCACAACCTGGAGTACCGGCTGAGGAGGCCGGAGCTGCAGTAGCTGCGGAATCTTCTACGGGTACCTGGACCACAGTATGGACAGACGGACTTACCAGTCTCGATCGCTACAAGGGCCGGTGTTACGATATTGAGCCCGTCGCTGGGGAGGAAAATCAGTATATTGCGTATGTAGCTTATCCTCTGGATTTATTCGAGGAAGGTTCCGTCACCAATATGCTGACTTCCATTGTAGGTAATGTTTTTGGATTCAAGGCCCTACGCGCTCTGCGTCTGGAAGACCTACGAATTCCTCCTGCGTATTCCAAAACTTTTCAAGGACCCCCACACGGCATTCAGGTAGAAAGGGATAAACTAAACAAATATGGACGTCCCCTACTGGGATGTACAATCAAGCCAAAATTGGGCTTGTCTGCCAAAAATTATGGTAGAGCAGTTTATGAATGCCTTCGTGGTGGACTTGATTTCACGAAAGATGATGAAAACGTGAATTCCCAACCTTTCATGCGTTGGAGAGACCGCTTCTTATTTGTAGCAGAAGCCCTTTTTAAAGCCCAGGCGGAAACGGGTGAAATCAAGGGACATTATTTAAATGCCACTGCAGGCACCTGGGAAGAGATGTTGAAGAGAGCTGTTTTCGCCAGAGAATTGGGTGCACCAATCGTCATGCATGACTACTTGACTGGGGGATTTACCGCAAATACCAGCTTAGCACATTATTGCAGAGACAACGGACTACTTCTTCACATTCACCGGGCGATGCATGCTGTCATCGATAGACAACGGAATCACGGTATGCATTTCCGTGTATTAGCCAAAGCATTGCGCATGTCTGGTGGGGATCATATCCATGCCGGAACTGTAGTGGGCAAATTAGAAGGTGAACGAGAAGTTACCCTGGGATTTGTCGACTTACTTCGCGACGATTATATTGAAAAGGATCGTAGCCGCGGCATCTATTTTACCCAAGATTGGGTATCCATGCCAGGTGTACTGCCCGTAGCTTCGGGTGGTATTCACGTCTGGCACATGCCTGCCCTAACCGAAATCTTCGGGGACGATTCTGTCTTACAATTCGGCGGGGGAACGTTGGGACATCCCTGGGGAAATGCACCCGGTGCTGTAGCTAACCGAGTTGCGTTGGAGGCTTGCGTACAGGCTCGTAACGAGCTGAGCTATAGCCCTTGACAAAATTGTTCATGTAACAAATATTCTATCCGTGACAACTAATTTATGTCAAGTCAATCAGTTGAAAGAAAAAATATTGAACCAGCAACTT----CTGATGTAACATGAACTTGCTTCCGGCCATTTCTCGTAGGTATAATAAATATATG--TATATATACAGGTGAACGTACACAGATAGATACATATAAATATATCTGAATCTATGTTATATACAGCAATATGAATCCCACATCT------GAGTAGGTGGGAATGATG-CATTGGTGCGTAGGAAGGTGGCGGAGAC OUTGROUP TTGACTTATTACACTCCCGAATACAAGACCAAAGATACTGATATCTTAGCGGCTTTCCGAATGACCCCACAACCTGGAGTACCGGCTGAGGAGGCCGGAGCTGCAGTAGCTGCGGAATCCTCTACGGGTACCTGGACCACGGTATGGACAGACGGACTTACCAGTCTCGATCGCTACAAGGGCCGGTGTTACGATATTGAGCCCGTCGCTGGGGAGGAAAATCAGTATATTGCGTATGTAGCTTATCCCCTGGATTTATTCGAGGAAGGTTCCGTCACCAATATGCTGACTTCCATTGTAGGTAATGTTTTTGGCTTCAAGGCCCTACGAGCTCTGCGTCTGGAAGACCTACGAATTCCTCCTGCGTATTCCAAAACTTTTATAGGCCCCCCACACGGCATTCAAGTAGAAAGGGATAAACTAAACAAATATGGGCGTCCCCTACTGGGATGTACAATCAAGCCAAAATTGGGCTTGTCTGCCAAAAATTATGGTAGAGCAGTTTATGAATGCCTTCGTGGTGGACTTGATTTCACGAAAGATGATGAAAACGTGAATTCCCAACCTTTCATGCGTTGGAGAGACCGCTTCTTATTTGTAGCAGAAGCCCTTTTTAAAGCCCAGGCGGAAACGGGTGAAATCAAGGGACATTATTTAAATGCCACTGCAGGCACCTGTGAAGAAATGTTGAAGAGAGCTGTTTTCGCCAGAGAATTGGGTGCACCAATCGTCATGCATGACTACTTGACTGGGGGGTTTACCGCAAATACCAGCTTAGCATTTTATTGCAGAGACAATGGGCTACTTCTTCACATTCACCGGGCGATGCATGCTGTAATCGATAGACAACGGAATCACGGTATACATTTCCGTGTATTAGCCAAAGCATTGCGCATGTCTGGTGGGGATCATATCCATGCCGGAACTGTAGTGGGCAAATTAGAAGGTGAACGAGAAGTTACCCTGGGGTTTGTCGACTTACTTCGCGACGATTATATTGAAAAGGATCGTAGCCGCGGCATCTATTTTACCCAGGATTGGGTATCCATGCCAGGTGTACTGCCCGTAGCTTCGGGTGGTATTCACGTCTGGCACATGCCTGCCCTAACCGAAATCTTCGGGGACGATTCTGTCTTACAATTCGGCGGGGGAACGTTGGGACATCCCTGGGGAAATGCACCCGGTGCTGTAGCTAACCGAGTTGCGTTGGAGGCTTGCGTACAGGCTCGTAACGAGCTGAGCTATAGCCCTTGACAAAACTATTCATGTAACAAATATTCTATCCGTGACAACTAATTTATGTCAAGTCAATAAGTTGGAAGAAAAAATATTGAACCAGCGACTTTTTATTGATGTAACATGAACTTGCTTCCGGCCATTTCTCGTGGGTATAATA------TATATATATATA--------------------------------TATATTTGAATCTATGTTATATACAGCAATTTGAATCCCACATCT------GAGTAGGTGGGAATCATGACATTGGTGCATAGGAAGGTGGCGGAGAC ; END; BEGIN CHARACTERS; TITLE 'Chloroplast DNA-indels'; DIMENSIONS NCHAR=11; FORMAT DATATYPE = STANDARD GAP = - MISSING = ? SYMBOLS = " 0 1 2 3 4 5 6 7 8 9 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z"; MATRIX HAPLOTYPE_A 1??1??001?0 HAPLOTYPE_B 1??1??001?0 HAPLOTYPE_C 1??1??001?0 HAPLOTYPE_D 1??1??00010 HAPLOTYPE_E 110000001?0 HAPLOTYPE_F 110000001?0 HAPLOTYPE_G 110000001?0 HAPLOTYPE_H 100000001?1 HAPLOTYPE_I 100000001?1 HAPLOTYPE_J 1?10?0001?0 HAPLOTYPE_K 1??1??001?0 HAPLOTYPE_L 10000100000 HAPLOTYPE_M 10000100000 HAPLOTYPE_N 100001001?0 HAPLOTYPE_O 100000101?1 HAPLOTYPE_P 100000101?1 OUTGROUP 000010011?0 ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED (CHARACTERS = 'Chloroplast DNA - DNA') = unord: 1 - 1544; TYPESET * UNTITLED (CHARACTERS = 'Chloroplast DNA-indels') = unord: 1 - 11; END; BEGIN TREES; Title 'Trees from "CP.trees"'; LINK Taxa = Taxa; TRANSLATE 1 HAPLOTYPE_A, 2 HAPLOTYPE_B, 3 HAPLOTYPE_C, 4 HAPLOTYPE_D, 5 HAPLOTYPE_E, 6 HAPLOTYPE_F, 7 HAPLOTYPE_G, 8 HAPLOTYPE_H, 9 HAPLOTYPE_I, 10 HAPLOTYPE_J, 11 HAPLOTYPE_K, 12 HAPLOTYPE_L, 13 HAPLOTYPE_M, 14 HAPLOTYPE_N, 15 HAPLOTYPE_O, 16 HAPLOTYPE_P, 17 OUTGROUP; TREE PAUP_1 = (17,((14,(12,13)),((8,9),(15,16)),((5,6,7),(4,(10,11),(1,(2,3))))))[% ] [% ] [% setBetweenBits = selected ]; END; BEGIN CODONS; CODESET * UNTITLED (CHARACTERS = 'Chloroplast DNA - DNA') = universal: 1 - 1544; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED (CHARACTERS = 'Chloroplast DNA - DNA') = 'Jukes-Cantor': 1 - 1544; ProbModelSet * UNTITLED (CHARACTERS = 'Chloroplast DNA-indels') = 'Mk1 (est.)': 1 - 11; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1339242383977; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 1214153663726845676; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 7729572818768163276; mqVersion 275; checksumv 0 3 168924713 null getNumChars 1544 numChars 1544 getNumTaxa 17 numTaxa 17 short true bits 15 states 15 sumSquaresStatesOnly 563850.0 sumSquares 563850.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 2 errorReportedDuringRun; mqVersion; setID 1 3753846386309387169; mqVersion 275; checksumv 1 3 487270420 null getNumChars 11 numChars 11 getNumTaxa 17 numTaxa 17 short false bits 3 states 3 sumSquaresStatesOnly 304.0 sumSquares 304.0 longCompressibleToShort true usingShortMatrix false NumFiles 1 NumMatrices 2 errorReportedDuringRun; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 446; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1024 650; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #1214153663726845676 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #1214153663726845676; getWindow; tell It; newAssistant #mesquite.lists.DefaultTaxaOrder.DefaultTaxaOrder; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 578 583; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #1214153663726845676 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 2735.1339242344052.2814233896632912894; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 578 583; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.reroot; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 6; orientUp; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #3753846386309387169 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 578 583; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.NoColor.NoColor; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges on; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames on; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize on; toggleColorsPanel off; toggleDiagonal on; setDiagonalHeight 80; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.categ.SmallStateNamesEditor.SmallStateNamesEditor; tell It; panelOpen true; endTell; endTell; showDataWindow #7729572818768163276 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 578 583; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; showCharacters #3753846386309387169 #mesquite.lists.CharacterList.CharacterList; tell It; setData 1; getWindow; tell It; newAssistant #mesquite.lists.DefaultCharOrder.DefaultCharOrder; newAssistant #mesquite.lists.CharListInclusion.CharListInclusion; newAssistant #mesquite.lists.CharListPartition.CharListPartition; newAssistant #mesquite.stochchar.CharListProbModels.CharListProbModels; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 578 583; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; endTell; showWindow; getEmployee #mesquite.lists.CharListAnnotPanel.CharListAnnotPanel; tell It; togglePanel off; endTell; endTell; showCharacters #7729572818768163276 #mesquite.lists.CharacterList.CharacterList; tell It; setData 0; getWindow; tell It; newAssistant #mesquite.lists.CharListInclusion.CharListInclusion; newAssistant #mesquite.stochchar.CharListProbModels.CharListProbModels; newAssistant #mesquite.lists.CharListCodonPos.CharListCodonPos; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 578 583; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; endTell; showWindow; getEmployee #mesquite.lists.CharListAnnotPanel.CharListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; endTell; end;