#NEXUS [written Wed Jun 20 15:30:51 EDT 2012 by Mesquite version 2.75 (build 564) at Robert-Baratheons-MacBook.local/10.0.1.25] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=72; TAXLABELS Landonia Glandulocauda Mimagoniates Phenacobrycon Planaltina Acrobrycon Diapoma Chrysobrycon Hysteronotus Pseudocorynopoma Gephyrocharax Pterobrycon Corynopoma Argopleura Ptychocharax Iotabrycon Xenurobrycon Tyttocharax Scopaeocharax Hysteronotus_megalostomus Hysteronotus_sp. Acrobrycon_ipanquianus Argopleura_chocoensis Argopleura_diquensis Argopleura_magdalenensis Argopleura_sp. Corynopoma_riisei Diapoma_speculiferum Diapoma_terofali Gephyrocharax_atricaudatus_ Gephyrocharax_caucanus Gephyrocharax_chocoensis Gephyrocharax_intermedius Gephyrocharax_major Gephyrocharax_melanocheir Gephyrocharax_sinensis Gephyrocharax_sp Gephyrocharax_valenci Gephyrocharax_venezuelae Gephyrocharax_whaleri Glandulocauda_melanogenys Glandulocauda_melanopleura Hysteronotus_hesperus Hysteronotus_myersi Iotabrycon_praecox Landonia_latidens Mimagoniates_barberi Mimagoniates_inequalis Mimagoniates_lateralis Mimagoniates_microlepis Phenacobrycon_henni Planaltina_myersi Pseudocorynopoma_doriae Pseudocorynopoma_heterandria Pterobrycon_landoni Pterobrycon_myrnae Scopaeocharax_atopodus Scopaeocharax_rhinodus Tyttocharax_madeirae Tyttocharax_sp._A Tyttocharax_sp._B Xenurobrycon_heterodon Planaltina_sp Acrobrycon_sp Xenurobrycon_polyancistrus Tyttocharax_sp Scopaeocharax_sp Ptychocharax_rhyacophila Mimagoniates_sylvicola Mimagoniates_rheocharis Xenurobrycon_macropus Xenurobrycon_pteropus ; IDS _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 1c8321bf -1579 - 4ea7 -82bc -5831cf247f0d 529ddabd - 4c3b - 8abe -6361e3917c18 520405c7 - ea0c -48ac - bf35 -f1dcb22745f1 bfab6987 -531b - 4a80 - 8aad - 7b1d82d66b98 2458ccd9 - bd72 -4672 -a5e8 -d62143f0931f 67bfd940 - 4e8e - 4a95 -a59b -85ce084e017d 53432bda - 8fd2 -4655 -b6b4 -b967a6c75200 6c08d3a1 -21d5 -4592 -b6a4 -594147de362a f6ea4e17 - ; END; BEGIN CHARACTERS; TITLE ';'; DIMENSIONS NCHAR=51; FORMAT DATATYPE = STANDARD GAP = - MISSING = ? SYMBOLS = " 0 1 2 3"; CHARSTATELABELS 1 'A relatively thin-skinned pouch or sac opening posteriorly to environment occurs on ventral caudal-fin lobe', 2 Insemination, 3 Pouch_scale, 4 'Scales of dorsal caudal-fin lobe', 5 Scales_of_ventral_caudal_lobe, 6 'Posterior terminal lateral-line tube', 7 Distinct_lobes_extending_posteriorly_from_posterior_border_of_pouch_scale, 8 'Scales bordering and supporting main portion of postero-lateral border of caudal pouch opening', 9 'Caudal-fin ray pump utilizing at least principal caudal-fin rays 10 and 11', 10 'Pouch scales of ventral caudal-fin lobe in females equivalent or nearly so in size and development with those in males', 11 'Scales of ventral caudal-fin lobe', 12 Parhypural_and_hypural_one, 13 'Proximal tips of medial first, second and sometimes third pelvic fin rays project anteriorly somewhat further than laterally adjacent rays', 14 'Connective tissue between pouch scale''s mid to distal region and caudal fin rays', 15 Number_of_pouch_scale_radii, 16 'Lateral line and lateral-line tube', 17 Caudal_interradialis_musculature, 18 'Scales covering dorsal border or region of caudal-fin pouch', 19 Ossified_posterior_portion_of_ossified_posterior_pelvic_process, 20 Location_of_pelvic_bone, 21 Supraorbital_sensory_canal_in_adults_of_both_sexes, 22 'Latero-sensory canal of posttemporal bone of both sexes', 23 Anteroventral_limb_or_process_of_postemporal_bone, 24 Premaxillary_teeth_in_adults_of_both_sexes, 25 Cusps_of_anterior_jaw_teeth_of_both_sexes, 26 Dorsal_laminar_process_of_anguloarticular_bone, 27 'Proximal portions of principal caudal-fin rays', 28 Caudal_fin_rays_11, 29 'Distal halves of principal caudal-fin rays 7-10', 30 'Principal caudal-fin rays 11 to 14', 31 'Principal caudal-fin rays 1-8 and 16-19 plus largest ventral procurrent ray', 32 Pouch_scales, 33 'Interadialis muscle fibers extending from mid-base of caudal fin to principal fin ray 10', 34 'Interradialis muscle fibers of ventral caudal-fin lobe', 35 'Number of anal-fin rays', 36 'Cartilaginous portion of pelvic-fin posterior process', 37 Anterior_tip_of_pelvic_bone_of_sexually_mature_males, 38 Anterior_tip_of_pelvic_bone_of_immatures_and_females, 39 Divergence_of_medial_two_fin_rays_of_pelvic_fin, 40 Two_premaxillary_tooth_rows_in_adults_of_both_sexes, 41 Anterior_few_teeth_of_maxilla_of_both_sexes, 42 Number_of_maxillary_teeth_in_adults_of_both_sexes, 43 'Caudal-fin rays 10 and especially 11 hypertrophied distally at attachment site of pouch scale ligament', 44 'Distance between base of caudal-fin rays 10 and 11 excluding unciform process', 45 Anteroventral_notch_and_lobe_of_pouch_scale, 46 'Anal-fin size', 47 Sperm_nuclei, 48 Sperm_storage_area_in_testes, 49 Sperm_ultrastructure, 50 Distribution_of_pouch_scale_radii, 51 Vertical_extent_of_pouch_scale ; MATRIX Landonia ??????????????????????????????????????????????????? Glandulocauda ??????????????????????????????????????????????????? Mimagoniates ??????????????????????????????????????????????????? Phenacobrycon ??????????????????????????????????????????????????? Planaltina ??????????????????????????????????????????????????? Acrobrycon ??????????????????????????????????????????????????? Diapoma ??????????????????????????????????????????????????? Chrysobrycon ??????????????????????????????????????????????????? Hysteronotus ??????????????????????????????????????????????????? Pseudocorynopoma ??????????????????????????????????????????????????? Gephyrocharax ??????????????????????????????????????????????????? Pterobrycon ??????????????????????????????????????????????????? Corynopoma ??????????????????????????????????????????????????? Argopleura ??????????????????????????????????????????????????? Ptychocharax ??????????????????????????????????????????????????? Iotabrycon ??????????????????????????????????????????????????? Xenurobrycon ??????????????????????????????????????????????????? Tyttocharax ??????????????????????????????????????????????????? Scopaeocharax ??????????????????????????????????????????????????? Hysteronotus_megalostomus 112011120010000000000000000000000000000000000021100 Hysteronotus_sp. 112011120010000000000000000000000000000000000021100 Acrobrycon_ipanquianus 110010010110000001000000000000000000000000000011100 Argopleura_chocoensis 112012020011110010000000000000000000000000000021100 Argopleura_diquensis 112012020011110010000000000000000000000000000021100 Argopleura_magdalenensis 112012020011110010000000000000000000000000000021100 Argopleura_sp. 112012020011110010000000000000000000000000000021100 Corynopoma_riisei 112010020010000000000000000000000000000000000121111 Diapoma_speculiferum 110010010110000101000000000000000000000000000011100 Diapoma_terofali 110010010110000101000000000000000000000000000011100 Gephyrocharax_atricaudatus_ 112010020010000000000000000000000000000000000021111 Gephyrocharax_caucanus 112010020010000000000000000000000000000000000021111 Gephyrocharax_chocoensis 112010020010000000000000000000000000000000000021111 Gephyrocharax_intermedius 112010020010000000000000000000000000000000000021111 Gephyrocharax_major 112010020010000000000000000000000000000000000021111 Gephyrocharax_melanocheir 112010020010000000000000000000000000000000000021111 Gephyrocharax_sinensis 112010020010000000000000000000000000000000000021111 Gephyrocharax_sp 112010020010000000000000000000000000000000000021111 Gephyrocharax_valenci 112010020010000000000000000000000000000000000021111 Gephyrocharax_venezuelae 112010020010000000000000000000000000000000000021111 Gephyrocharax_whaleri 112010020010000000000000000000000000000000000021111 Glandulocauda_melanogenys 010100001000000100000000000000000000000000000021200 Glandulocauda_melanopleura 010100001000000100000000000000000000000000000021200 Hysteronotus_hesperus 112012020010000000000000000000000000000000000021100 Hysteronotus_myersi 112012020010000000000000000000000000000000000021100 Iotabrycon_praecox 112010020011111110111111100000000000000000000021100 Landonia_latidens 010001000000000000000000000000000000000000000021?00 Mimagoniates_barberi 010100002000000100000000000000000000000001000021200 Mimagoniates_inequalis 010100002000000100000000000000000000000001000021200 Mimagoniates_lateralis 010100002000000100000000000000000000000001000021200 Mimagoniates_microlepis 010100002000000100000000000000000000000001000021200 Phenacobrycon_henni 111010020010000000000000000000000000000000000021100 Planaltina_myersi 111110020110000001000000000000000000000000000001000 Pseudocorynopoma_doriae 112010120010000000000000000000000000000000000021100 Pseudocorynopoma_heterandria 112010120010000000000000000000000000000000000021100 Pterobrycon_landoni 112010020000000000000000000000000000000000000121112 Pterobrycon_myrnae 112010020000000000000000000000000000000000000121112 Scopaeocharax_atopodus 113010020011131120121111111111111111121112111021100 Scopaeocharax_rhinodus 113010020011131120121111111111111111121112111021100 Tyttocharax_madeirae 113010020011131120121111111111111111111112111021100 Tyttocharax_sp._A 113010020011131120121111111111111111111112111021100 Tyttocharax_sp._B 113010020011131120121111111111111111111112111021100 Xenurobrycon_heterodon 113010020011121120131111111211111111211112000021100 Planaltina_sp 111110020110000001000000000000000000000000000001000 Acrobrycon_sp 110010010110000001000000000000000000000000000011100 Xenurobrycon_polyancistrus 113010020011121120131111111211111111211112000021100 Tyttocharax_sp 113010020011131120121111111111111111111112111021100 Scopaeocharax_sp 113010020011131120121111111111111111121112111021100 Ptychocharax_rhyacophila 112010020011111010001000000000000000000000000021100 Mimagoniates_sylvicola 010100002000000100000000000000000000000001000021200 Mimagoniates_rheocharis 010100002000000100000000000000000000000001000021200 Xenurobrycon_macropus 113010020011121120131111111211111111211112000021100 Xenurobrycon_pteropus 113010020011121120131111111211111111211112000021100 ; BLOCKID eadf57fe; END; BEGIN TREES; Title Trees; LINK Taxa = Taxa; TRANSLATE 1 Landonia, 2 Glandulocauda, 3 Mimagoniates, 4 Phenacobrycon, 5 Planaltina, 6 Acrobrycon, 7 Diapoma, 8 Chrysobrycon, 9 Hysteronotus, 10 Pseudocorynopoma, 11 Gephyrocharax, 12 Pterobrycon, 13 Corynopoma, 14 Argopleura, 15 Ptychocharax, 16 Iotabrycon, 17 Xenurobrycon, 18 Tyttocharax, 19 Scopaeocharax, 20 Hysteronotus_megalostomus, 21 Hysteronotus_sp., 22 Acrobrycon_ipanquianus, 23 Argopleura_chocoensis, 24 Argopleura_diquensis, 25 Argopleura_magdalenensis, 26 Argopleura_sp., 27 Corynopoma_riisei, 28 Diapoma_speculiferum, 29 Diapoma_terofali, 30 Gephyrocharax_atricaudatus_, 31 Gephyrocharax_caucanus, 32 Gephyrocharax_chocoensis, 33 Gephyrocharax_intermedius, 34 Gephyrocharax_major, 35 Gephyrocharax_melanocheir, 36 Gephyrocharax_sinensis, 37 Gephyrocharax_sp, 38 Gephyrocharax_valenci, 39 Gephyrocharax_venezuelae, 40 Gephyrocharax_whaleri, 41 Glandulocauda_melanogenys, 42 Glandulocauda_melanopleura, 43 Hysteronotus_hesperus, 44 Hysteronotus_myersi, 45 Iotabrycon_praecox, 46 Landonia_latidens, 47 Mimagoniates_barberi, 48 Mimagoniates_inequalis, 49 Mimagoniates_lateralis, 50 Mimagoniates_microlepis, 51 Phenacobrycon_henni, 52 Planaltina_myersi, 53 Pseudocorynopoma_doriae, 54 Pseudocorynopoma_heterandria, 55 Pterobrycon_landoni, 56 Pterobrycon_myrnae, 57 Scopaeocharax_atopodus, 58 Scopaeocharax_rhinodus, 59 Tyttocharax_madeirae, 60 Tyttocharax_sp._A, 61 Tyttocharax_sp._B, 62 Xenurobrycon_heterodon, 63 Planaltina_sp, 64 Acrobrycon_sp, 65 Xenurobrycon_polyancistrus, 66 Tyttocharax_sp, 67 Scopaeocharax_sp, 68 Ptychocharax_rhyacophila, 69 Mimagoniates_sylvicola, 70 Mimagoniates_rheocharis, 71 Xenurobrycon_macropus, 72 Xenurobrycon_pteropus; TREE 'Figure 1+' = (1,(2,3),((5,(6,7)),((4,(9,10),(11,(13,12))),(8,(14,(15,(16,(17,(18,19))))))))); END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Mk1 (est.)': 1 - 51; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 51; END; BEGIN NOTES; SUT TAXA = Taxa TAXON = 20 NAME = color INTEGER = 8; SUT TAXA = Taxa TAXON = 21 NAME = color INTEGER = 8; SUT TAXA = Taxa TAXON = 22 NAME = color INTEGER = 8; SUT TAXA = Taxa TAXON = 23 NAME = color INTEGER = 8; SUT TAXA = Taxa TAXON = 24 NAME = color INTEGER = 8; SUT TAXA = Taxa TAXON = 25 NAME = color INTEGER = 8; SUT TAXA = Taxa TAXON = 26 NAME = color INTEGER = 8; SUT TAXA = Taxa TAXON = 27 NAME = color INTEGER = 8; SUT TAXA = Taxa TAXON = 28 NAME = color INTEGER = 8; SUT TAXA = Taxa TAXON = 29 NAME = color INTEGER = 8; SUT TAXA = Taxa TAXON = 30 NAME = color INTEGER = 8; SUT TAXA = Taxa TAXON = 31 NAME = color INTEGER = 8; SUT TAXA = Taxa TAXON = 32 NAME = color INTEGER = 8; SUT TAXA = Taxa TAXON = 33 NAME = color INTEGER = 8; SUT TAXA = Taxa TAXON = 34 NAME = color INTEGER = 8; 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SUTM T = 26 N = Overwritten S = 'Overwritten by states from file Weitzman_Menezes_1998.nex on Tue Jun 19 10:38:06 EDT 2012'; TEXT FILE TEXT = 'Note: Student Michael Jones has modified some of the taxa labels to link with the appropriate NCBI and UBio entries.^n^ncharacter notes^n(1) page 181: Diagnosis . Three easily visible autapomorphies diagn se ^nLand onia: (1) A thick-walled membranous caudal sac that ^nopen s laterally occurs on the ventral lob e of the c aud al fin fin ^n^ncharacter 1 describes thin vs thick caudal sac rather than presence or absence of this structure?'; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1340220651893; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 2277959247619197096; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 443672451643598475 eadf57fe; mqVersion 275; checksumv 0 3 3442041724 eadf57fe getNumChars 51 numChars 51 getNumTaxa 72 numTaxa 72 short true bits 15 states 15 sumSquaresStatesOnly 8861.0 sumSquares 8861.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 722 822; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #2277959247619197096 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 1111.1237228246456.5305402909800615355; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 622 755; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.arrow; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 6; orientRight; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setTree '(1,(2,3),((5,(6,7)),((4,(9,10),(11,(13,12))),(8,(14,(15,(16,(17,(18,19)))))))));'; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.minimal.ManageMesquiteBlock.ManageMesquiteBlock; tell It; getEmployee #mesquite.basic.RawNexusBlockEditor.RawNexusBlockEditor; tell It; getWindow; tell It; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 622 805; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; endTell; showWindow; endTell; endTell; getEmployee #mesquite.basic.ManageFileComments.ManageFileComments; tell It; editFileComment 0; tell It; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 622 805; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; showWindow; endTell; endTell; endTell; end;