#NEXUS 

Begin trees;  [Treefile saved Sat Jun 23 19:02:18 2012]
[!
>Data file = C:\Users\nankai-ecolab\Documents\������\��ϵͳ�������4\tub2\tub2-align.nex
>Bootstrap method with heuristic search:
>  Number of bootstrap replicates = 1000
>  Starting seed = 508798463
>  Optimality criterion = parsimony
>    Character-status summary:
>      Of 577 total characters:
>        All characters are of type 'unord'
>        All characters have equal weight
>        339 characters are constant
>        123 variable characters are parsimony-uninformative
>        Number of parsimony-informative characters = 115
>    Gaps are treated as "missing"
>    Multistate taxa interpreted as uncertainty
>  Starting tree(s) obtained via stepwise addition
>  Addition sequence: random
>    Number of replicates = 1000
>    Starting seed = 675201879
>  Number of trees held at each step during stepwise addition = 1
>  Branch-swapping algorithm: tree-bisection-reconnection (TBR)
>  Steepest descent option not in effect
>  Initial 'MaxTrees' setting = 100
>  Branches collapsed (creating polytomies) if maximum branch length is zero
>  'MulTrees' option in effect
>  Topological constraints not enforced
>  Trees are unrooted
>
>   1000 bootstrap replicates completed
>   Note: Effectiveness of search may have been diminished due to tree-buffer
>         overflow.
>   Time used = 02:12:09.8
]
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		1 Neotyphodium_coenophialum_90664_c,
		2 Epichloe_typhina_200736,
		3 Neotyphodium_uncinatum_e105,
		4 Neotyphodium_coenophialum_e19_b,
		5 Neotyphodium_coenophialum_e19_c,
		6 Epichloe_festucae_90661,
		7 Epichloe_festucae_28,
		8 Epichloe_festucae_201550,
		9 Epichloe_baconii_76552,
		10 Epichloe_baconii_200745,
		11 Epichloe_typhina_200740,
		12 Epichloe_glyceriae_200755,
		13 Epichloe_baconii_90167,
		14 Epichloe_typhina_200851,
		15 Epichloe_clarkii_200742,
		16 Epichloe_typhina_201666,
		17 Neotyphodium_lolii_135,
		18 Epichloe_typhina_200738,
		19 Epichloe_bromicola_200749,
		20 Epichloe_sylvatica_200751,
		21 Epichloe_typhina_200739,
		22 Epichloe_amarillans_200743,
		23 Epichloe_elymi_200850,
		24 Epichloe_elymi_201551,
		25 Epichloe_amarillans_200744,
		26 Epichloe_brachyelytri_201561,
		27 Epichloe_typhina_201667,
		28 Epichloe_bromicola_201558,
		29 Epichloe_bromicola_201559,
		30 Epichloe_elymi_201554,
		31 Epichloe_elymi_201555,
		32 Epichloe_elymi_201556,
		33 Neotyphodium_typhinum_var._canariense_989,
		34 Neotyphodium_occultans_992_a,
		35 Neotyphodium_occultans_992_b,
		36 Neotyphodium_siegelii_e915_a,
		37 Neotyphodium_siegelii_e915_b,
		38 Neotyphodium_aotearoae_829,
		39 Neotyphodium_australiense_937_a,
		40 Neotyphodium_australiense_937_b,
		41 Neotyphodium_melicicola_822_a,
		42 Neotyphodium_melicicola_827_a,
		43 Neotyphodium_melicicola_822_b,
		44 Neotyphodium_melicicola_827_b,
		45 Neotyphodium_tembladerae_1169_a,
		46 Neotyphodium_tembladerae_1169_b,
		47 Epichloe_amarillans_906,
		48 Neotyphodium_chisosum_134_b,
		49 Neotyphodium_chisosum_134_a,
		50 Neotyphodium_chisosum_134_c,
		51 Neotyphodium_huerfanum_64040,
		52 Neotyphodium_gansuense_var._inebrians_817,
		53 Neotyphodium_tembladerae_4055_a,
		54 Neotyphodium_tembladerae_4055_b,
		55 Neotyphodium_tembladerae_Ms803_a,
		56 Neotyphodium_tembladerae_Ms803_b,
		57 Epichloe_yangzii_Rnj3303,
		58 Neotyphodium_guerinii_MYA_1235_a,
		59 Neotyphodium_guerinii_MYA_1235_b,
		60 Neotyphodium_guerinii_1102_a,
		61 Neotyphodium_guerinii_1102_b,
		62 Neotyphodium_gansuense_E7083,
		63 Neotyphodium_sinicum_Rdy4202,
		64 Neotyphodium_stromatolongum_Cnj6620,
		65 Neotyphodium_sibiricum_MTI_I02,
		66 Neotyphodium_sibiricum_MTI_I03,
		67 Neotyphodium_gansuense_MTII_H05,
		68 Neotyphodium_gansuense_MTIII_X01,
		69 Neotyphodium_sinofestucae_Fnj6606_a,
		70 Neotyphodium_sinofestucae_Fnj6606_b,
		71 Epichloe_bromicola_0814_1,
		72 Epichloe_sp._61691,
		73 Epichloe_sp._62444,
		74 Epichloe_sp._005karuno,
		75 Epichloe_sp._007kusatu,
		76 Epichloe_poae,
		77 Echinodothis_tuberiformis_B351,
		78 Epichloe_sp._9924,
		79 Epichloe_liyangensis_Ply9101_1,
		80 Epichloe_liyangensis_Ply9101_2,
		81 Epichloe_liyangensis_Ply9102_1,
		82 Epichloe_liyangensis_Ply9102_2,
		83 Epichloe_liyangensis_Ply9103_1,
		84 Epichloe_liyangensis_Ply9103_2,
		85 Epichloe_liyangensis_Ply9104_1,
		86 Epichloe_liyangensis_Ply9104_2,
		87 Epichloe_sp._204,
		88 Epichloe_sp._207,
		89 Epichloe_sp._224,
		90 Epichloe_sp._229,
		91 Epichloe_sp._303,
		92 Epichloe_sp._312,
		93 Epichloe_sp._330,
		94 Epichloe_sp._336,
		95 Epichloe_sp._410,
		96 Epichloe_sp._414,
		97 Epichloe_sp._429
		;
tree PAUP_1 = [&R] (77:100,((((1:100,34:100)99:99,(9:100,13:100)99:99)83:83,(((4:100,39:100)55:55,6:100,7:100,8:100,17:100,37:100,(41:100,42:100)65:65,53:100,55:100)62:62,45:100)56:56,10:100,(22:100,(25:100,47:100)90:90,48:100)76:76,64:100,78:100)95:95,((((((2:100,15:100)98:98,(14:100,16:100)100:100)87:87,(11:100,(18:100,(58:100,60:100)66:66)71:71)54:54)92:92,(20:100,21:100)79:79)80:80,(((3:100,5:100)64:64,27:100,33:100,((46:100,54:100,56:100)55:55,51:100,76:100,80:100,82:100,84:100,86:100)61:61)81:81,40:100,50:100,70:100)59:59)79:79,26:100,(38:100,43:100,44:100)98:98)55:55,12:100,((19:100,(((28:100,29:100)93:93,36:100)62:62,57:100,69:100,79:100,85:100)60:60,35:100)64:64,(49:100,((63:100,81:100)62:62,72:100,73:100,74:100,75:100,83:100)89:89,71:100,(87:100,88:100,89:100,90:100,(91:100,92:100,93:100,94:100,95:100,96:100,97:100)66:66)95:95)78:78)88:88,(23:100,24:100,30:100,31:100,32:100)96:96)62:62,((52:100,((62:100,68:100)74:74,67:100)91:91)58:58,((59:100,61:100)55:55,65:100,66:100)100:100)99:99)0;
End;