#NEXUS [written Wed Jul 11 15:39:54 CEST 2012 by Mesquite version 2.75 (build 566) at pc11/10.0.0.21] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=36; TAXLABELS Fusarium_proliferatum_AM404116_ Fusarium_proliferatum_AM404122 Fusarium_proliferatum_AM404132 Fusarium_proliferatum_JQ762604 Fusarium_proliferatum_JQ762612 Fusarium_proliferatum_AM397477 Fusarium_proliferatum_AM404118 Fusarium_proliferatum_JQ762615 Fusarium_proliferatum_JQ762613 Fusarium_proliferatum_JQ762605 Fusarium_proliferatum_JQ762606 Fusarium_proliferatum_JQ762607 Fusarium_proliferatum_JQ762611 Fusarium_proliferatum_JQ762614 Fusarium_proliferatum_AM397464 Fusarium_proliferatum_AM404129 Fusarium_proliferatum_AM404130 Fusarium_proliferatum_AM404131 Fusarium_proliferatum_JQ762609 Fusarium_proliferatum_JQ762608 Fusarium_proliferatum_AM404134 Fusarium_proliferatum_JQ762610 Fusarium_proliferatum_AF336913 Fusarium_proliferatum_AM397466 Fusarium_proliferatum_AM397467 Fusarium_proliferatum_AM397469 Fusarium_proliferatum_AM397470 Fusarium_proliferatum_AM397468 Fusarium_proliferatum_AM397460 Fusarium_proliferatum_AM397465 Fusarium_proliferatum_AM397471 Fusarium_proliferatum_AM404117 Fusarium_proliferatum_AM404119 Fusarium_proliferatum_AM404128 Fusarium_sp._AF160283 Fusarium_sp._AF160288 ; END; BEGIN CHARACTERS; TITLE Fusarium_proliferatum_TEF_alignment; DIMENSIONS NCHAR=617; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Fusarium_proliferatum_AM404116_ tcgtcatcggccacgtcgactctggcaagtcgaccactgtgagtactaccctggacgatgagcttatctgccatcgtgatcctgaccaagatctggcggggtacatcttggaagacaatatgctgacatcgcttcacagaccggtcacttgatctaccagtgcggtggtatcgacaagcgaaccatcgagaagttcgagaaggttagtctcccttcgatagcgcgtcctctgcccaccgatttcacttgcgattcgaaacgtgcctgctaccccgctcgagaccaaaatttttgcgatatgaccgtaatttttgggtggggcatttaccccgccactcgagatgagcgcgtccacaacctcaatgagcgcattgtcacgtgtcaagcagcgactaaccattcgacaataggaagccgctgagctcggtaagggttccttcaagtacgcctgggttcttgacaagctcaaggccgagcgtgagcgtggtatcaccatcgatattgctctctggaagttcgagactcctcgctactatgtcaccgtcattggtatgttgtcgctcatacctcatcctacttcctcatactaacatcattcagacgctcccggtcaccgt Fusarium_proliferatum_AM404122 tcgtcatcggccacgtcgactctggcaagtcgaccactgtgagtactaccctggacgatgagcttatctgccatcgtgatcctgaccaagatctggcggggtacatcttggaagacaatatgctgacatcgcttcacagaccggtcacttgatctaccagtgcggtggtatcgacaagcgaaccatcgagaagttcgagaaggttagtctcccttcgatcgcgcgtcctctgcccaccgatttcacttgcgattcgaaacgtgcctgctaccccgctcgagaccaaaatttttgcgatatgaccgtaattttttggtggggcatttaccccgccactcgagatgagcgcgtccacaacctcaatgagcgcattgtcacgtgtcaagcagcgactaaccattcgacaataggaagccgctgagctcggtaagggttccttcaagtacgcctgggttcttgacaagctcaaggccgagcgtgagcgtggtatcaccatcgatattgctctctggaagttcgagactcctcgctactatgtcaccgtcattggtatgttgtcgctcatacctcatcctacttcctcatactaacatcattcagacgctcccggtcaccgt Fusarium_proliferatum_AM404132 tcgtcatcggccacgtcgactctggcaagtcgaccactgtgagtactaccctggacgatgagcttatctgccatcgtgatcctgaccaagatctggcggggtacatcttggaagacaatatgctgacatcgcttcacagaccggtcacttgatctaccagtgcggtggtatcgacaagcgaaccatcgagaagttcgagaaggttagtctcccttcgatcgcgcgtcctctgcccaccgatttcacttgcgattcgaaacgtgcctgctaccccgctcgagaccaaaatttttgcgatatgaccgtaattttttggtggggcatttaccccgccactcgagatgagcgcgtccacaacctcaatgagcgcattgtcacgtgtcaagcagcgactaaccattcgacaataggaagccgctgagctcggtaagggttccttcaagtacgcctgggttcttgacaagctcaaggccgagcgtgagcgtggtatcaccatcgatattgctctctggaagttcgagactcctcgctactatgtcaccgtcattggtatgttgtcgctcatacctcatcctacttcctcatactaacatcattcagacgctcccggtcaccgt Fusarium_proliferatum_JQ762604 tcgtcatcggccacgtcgactctggcaagtcgaccactgtgagtactaccctggacgatgagcttatctgccatcgtgatcctgaccaagatctggcggggtacatcttggaagacaatatgctgacatcgcttcacagaccggtcacttgatctaccagtgcggtggtatcgacaagcgaaccatcgagaagttcgagaaggttagtctcccttcgatcgcgcgtcctctgcccaccgatttcacttgcgattcgaaacgtgcctgctaccccgctcgagaccaaaatttttgcgatatgaccgtaattttttggtggggcatttaccccgccactcgagatgagcgcgtccacaacctcaatgagcgcattgtcacgtgtcaagcagcgactaaccattcgacaataggaagccgctgagctcggtaagggttccttcaagtacgcctgggttcttgacaagctcaaggccgagcgtgagcgtggtatcaccatcgatattgctctctggaagttcgagactcctcgctactatgtcaccgtcattggtatgttgtcgctcatacctcatcctacttcctcatactaacatcattcagacgctcccggtcaccgt Fusarium_proliferatum_JQ762612 tcgtcatcggccacgtcgactctggcaagtcgaccactgtgagtactaccctggacgttgagcttatctgccatcgtgatcctgaccaagatctggcggggtacatcttggaagacaacatgctgacatcgcttcacagaccggtcacttgatctaccagtgcggtggtatcgacaagcgaaccatcgagaagttcgagaaggttagtctcccttcgatcgcgcgtcctctgcccaccgatttcacttgcgattcgaaacgtgcctgctaccccgctcgagaccaaaaattttgcgatatgaccgtaattttttggtggggcatttaccccgccactcgagatgggcgcgtccacaacctcaatgagcgcattgtcacgtgtcaagcagcaactaaccattcgacagtaggaagccgctgagctcggtaagggttccttcaagtacgcctgggttcttgacaagctcaaggccgagcgtgagcgtggtatcaccatcgctattgctctctggaagttcgagactcctcgctactatgtcaccgtcattggtatgttgtcgctcatacctcatcctacttcctcatactaacatcattcagacgctcccggtcaccgt Fusarium_proliferatum_AM397477 tcgtcatcggccacgtcgactctggcaagtcgaccactgtgagtactaccctggacgttgagcttatctgccatcgtgatcctgaccaagatctggcggggtacatcttggaagacaacatgctgacatcgcttcacagaccggtcacttgatctaccagtgcggtggtatcgacaagcgaaccatcgagaagttcgagaaggttagtctcccttcgatcgcgcgtcctctgcccaccgatttcacttgcgattcgaaacgtgcctgctaccccgctcgagaccaaaaattttgcgatatgaccgtaattttttggtggggcatttaccccgccactcgagatgggcgcgtccacaacctcaatgagcgcattgtcacgtgtcaagcagcgactaaccattcgacaataggaagccgctgagctcggtaagggttccttcaagtacgcctgggttcttgacaagctcaaggccgagcgtgagcgtggtatcaccatcgatattgctctctggaagttcgagactcctcgctactatgtcaccgtcattggtatgttgtcgctcatacctcatcctacttcctcatactaacatcattcagacgctcccggtcaccgt Fusarium_proliferatum_AM404118 tcgtcatcggccacgtcgactctggcaagtcgaccactgtgagtactaccctggacgttgagcttatctgccatcgtgatcctgaccaagatctggcggggtacatcttggaagacaacatgctgacatcgcttcacagaccggtcacttgatctaccagtgcggtggtatcgacaagcgaaccatcgagaagttcgagaaggttagtctcccttcgatcgcgcgtcctctgcccaccgatttcacttgcgattcgaaacgtgcctgctaccccgctcgagaccaaaaattttgcgatatgaccgtaattttttggtggggcatttaccccgccactcgagatgggcgcgtccacaacctcaatgagcgcattgtcacgtgtcaagcagcgactaaccattcgacaataggaagccgctgagctcggtaagggttccttcaagtacgcctgggttcttgacaagctcaaggccgagcgtgagcgtggtatcaccatcgatattgctctctggaagttcgagactcctcgctactatgtcaccgtcattggtatgttgtcgctcatacctcatcctacttcctcatactaacatcattcagacgctcccggtcaccgt Fusarium_proliferatum_JQ762615 tcgtcatcggccacgtcgactctggcaagtcgaccactgtgagtactaccctggacgatgagcttatctgccatcgtgatcctgaccaagatctggcggggtacatcttggaagacaatatgctgacatcgcttcacagaccggtcacttgatctaccagtgcggtggtatcgacaagcgaaccatcgagaagttcgagaaggttagtctcccttcgatcgcgcgtcctctgcccaccgatttcacttgcgattcgaaacgtgcctgctaccccgctcgagaccaaaaattttgcgatatgaccgtaattttttggtggggcatttaccccgccactcgagatgggcgtgtccacaacctcaatgagcgcattgtcacgtgtcaagcaacgactaaccattcgacaataggaagccgctgagctcggtaagggttccttcaagtacgcctgggttcttgacaagctcaaggccgagcgtaagcgtggtatcaccatcgatattgctctctggaagttcgagactcctcgctactatgtcaccgtcattggtatgttgtcgctcttacttcatcctacttcctcatactaacatcattcagacgctcccggtcaccgt Fusarium_proliferatum_JQ762613 tcgtcatcggccacgtcgactctggcaagtcgaccactgtgagtactaccctggacgatgagcttatctgccatcgtgatcccgaccaagatctggcggggtacatcttggaagacaatatgctgacatcgcttcacagaccggtcacttgatctaccagtgcggtggtatcgacaagcgaaccatcgagaagttcgagaaggttagtctcccttcgatcgcgcgtcctctgcccaccgatttcacttgcgattcgaaacgtgcctgctaccccgctcgagaccaaaaattttgcgatatgaccgtaattttttggtggggcatttaccccgccactcgagatgggcgtgtccacaacctcaatgagcgcattgtcacgtgtcaagcaacgactaaccattcgacaataggaagccgctgagctcggtaagggttccttcaagtacgcctgggttcttgacaagctcaaggccgagcgtgagcgtggtatcaccatcgatattgctctctggaagttcgagactcctcgctactatgtcaccgtcattggtatgttgtcgctcttacttcatcctacttcctcatactaacatcattcagacgctcccggtcaccgt Fusarium_proliferatum_JQ762605 tcgtcatcggccacgtcgactctggcaagtcgaccactgtgagtactaccctggacgatgagcttatctgccatcgtgatcctgaccaagatctggcggggtacatcttggaagacaatatgctgacatcgcttcacagaccggtcacttgatctaccagtgcggtggtatcgacaagcgaaccatcgagaagttcgagaaggttagtctcccttcgatcgcgcgtcctctgcccaccgatttcacttgcgattcgaaacgtgcctgctaccccgctcgagaccaaaaattttgcgatatgaccgtaattttttggtggggcatttaccccgccactcgagatgggcgtgtccacaacctcaatgagcgcattgtcacgtgtcaagcaacgactaaccattcgacaataggaagccgctgagctcggtaagggttccttcaagtacgcctgggttcttgacaagctcaaggccgagcgtgagcgtggtatcaccatcgatattgctctctggaagttcgagactcctcgctactatgtcaccgtcattggtatgttgtcgctcttacttcatcctacttcctcatactaacatcattcagacgctcccggtcaccgt Fusarium_proliferatum_JQ762606 tcgtcatcggccacgtcgactctggcaagtcgaccactgtgagtactaccctggacgatgagcttatctgccatcgtgatcctgaccaagatctggcggggtacatcttggaagacaatatgctgacatcgcttcacagaccggtcacttgatctaccagtgcggtggtatcgacaagcgaaccatcgagaagttcgagaaggttagtctcccttcgatcgcgcgtcctctgcccaccgatttcacttgcgattcgaaacgtgcctgctaccccgctcgagaccaaaaattttgcgatatgaccgtaattttttggtggggcatttaccccgccactcgagatgggcgtgtccacaacctcaatgagcgcattgtcacgtgtcaagcaacgactaaccattcgacaataggaagccgctgagctcggtaagggttccttcaagtacgcctgggttcttgacaagctcaaggccgagcgtgagcgtggtatcaccatcgatattgctctctggaagttcgagactcctcgctactatgtcaccgtcattggtatgttgtcgctcttacttcatcctacttcctcatactaacatcattcagacgctcccggtcaccgt Fusarium_proliferatum_JQ762607 tcgtcatcggccacgtcgactctggcaagtcgaccactgtgagtactaccctggacgatgagcttatctgccatcgtgatcctgaccaagatctggcggggtacatcttggaagacaatatgctgacatcgcttcacagaccggtcacttgatctaccagtgcggtggtatcgacaagcgaaccatcgagaagttcgagaaggttagtctcccttcgatcgcgcgtcctctgcccaccgatttcacttgcgattcgaaacgtgcctgctaccccgctcgagaccaaaaattttgcgatatgaccgtaattttttggtggggcatttaccccgccactcgagatgggcgtgtccacaacctcaatgagcgcattgtcacgtgtcaagcaacgactaaccattcgacaataggaagccgctgagctcggtaagggttccttcaagtacgcctgggttcttgacaagctcaaggccgagcgtgagcgtggtatcaccatcgatattgctctctggaagttcgagactcctcgctactatgtcaccgtcattggtatgttgtcgctcttacttcatcctacttcctcatactaacatcattcagacgctcccggtcaccgt Fusarium_proliferatum_JQ762611 tcgtcatcggccacgtcgactctggcaagtcgaccactgtgagtactaccctggacgatgagcttatctgccatcgtgatcctgaccaagatctggcggggtacatcttggaagacaatatgctgacatcgcttcacagaccggtcacttgatctaccagtgcggtggtatcgacaagcgaaccatcgagaagttcgagaaggttagtctcccttcgatcgcgcgtcctctgcccaccgatttcacttgcgattcgaaacgtgcctgctaccccgctcgagaccaaaaattttgcgatatgaccgtaattttttggtggggcatttaccccgccactcgagatgggcgtgtccacaacctcaatgagcgcattgtcacgtgtcaagcaacgactaaccattcgacaataggaagccgctgagctcggtaagggttccttcaagtacgcctgggttcttgacaagctcaaggccgagcgtgagcgtggtatcaccatcgatattgctctctggaagttcgagactcctcgctactatgtcaccgtcattggtatgttgtcgctcttacttcatcctacttcctcatactaacatcattcagacgctcccggtcaccgt Fusarium_proliferatum_JQ762614 tcgtcatcggccacgtcgactctggcaagtcgaccactgtgagtactaccctggacgatgagcttatctgccatcgtgatcctgaccaagatctggcggggtacatcttggaagacaatatgctgacatcgcttcacagaccggtcacttgatctaccagtgcggtggtatcgacaagcgaaccatcgagaagttcgagaaggttagtctcccttcgatcgcgcgtcctctgcccaccgatttcacttgcgattcgaaacgtgcctgctaccccgctcgagaccaaaaattttgcgatatgaccgtaattttttggtggggcatttaccccgccactcgagatgggcgtgtccacaacctcaatgagcgcattgtcacgtgtcaagcaacgactaaccattcgacaataggaagccgctgagctcggtaagggttccttcaagtacgcctgggttcttgacaagctcaaggccgagcgtgagcgtggtatcaccatcgatattgctctctggaagttcgagactcctcgctactatgtcaccgtcattggtatgttgtcgctcttacttcatcctacttcctcatactaacatcattcagacgctcccggtcaccgt Fusarium_proliferatum_AM397464 tcgtcatcggccacgtcgactctggcaagtcgaccactgtgagtactaccctggacgatgagcttatctgccatcgtgatcctgaccaagatctggcggggtacatcttggaagacaatatgctgacatcgcttcacagaccggtcacttgatctaccagtgcggtggtatcgacaagcgaaccatcgagaagttcgagaaggttagtctcccttcgatcgcgcgtcctctgcccaccgatttcacttgcgattcgaaacgtgcctgctaccccgctcgagaccaaaaattttgcgatatgaccgtaattttttggtggggcatttaccccgccactcgagatgggcgcgtccacaacctcaatgagcgcattgtcacgtgtcaagcaacgactaaccattcgacaataggaagccgctgagctcggtaagggttccttcaagtacgcctgggttcttgacaagctcaaggccgagcgtgagcgtggtatcaccatcgatattgctctctggaagttcgagactcctcgctactatgtcaccgtcattggtatgttgtcgctcttacttcatcctacttcctcatactaacatcatgcagacgctcccggtcaccgt Fusarium_proliferatum_AM404129 tcgtcatcggccacgtcgactctggcaagtcgaccactgtgagtactaccctggacgatgagcttatctgccatcgtgatcctgaccaagatctggcggggtacatcttggaagacaatatgctgacatcgcttcacagaccggtcacttgatctaccagtgcggtggtatcgacaagcgaaccatcgagaagttcgagaaggttagtctcccttcgatcgcgcgtcctctgcccaccgatttcacttgcgattcgaaacgtgcctgctaccccgctcgagaccaaaaattttgcgatatgaccgtaattttttggtggggcatttaccccgccactcgagatgggcgcgtccacaacctcaatgagcgcattgtcacgtgtcaagcaacgactaaccattcgacaataggaagccgctgagctcggtaagggttccttcaagtacgcctgggttcttgacaagctcaaggccgagcgtgagcgtggtatcaccatcgatattgctctctggaagttcgagactcctcgctactatgtcaccgtcattggtatgttgtcgctcttacttcatcctacttcctcatactaacatcattcagacgctcccggtcaccgt Fusarium_proliferatum_AM404130 tcgtcatcggccacgtcgactctggcaagtcgaccactgtgagtactaccctggacgatgagcttatctgccatcgtgatcctgaccaagatctggcggggtacatcttggaagacaatatgctgacatcgcttcacagaccggtcacttgatctaccagtgcggtggtatcgacaagcgaaccatcgagaagttcgagaaggttagtctcccttcgatcgcgcgtcctctgcccaccgatttcacttgcgattcgaaacgtgcctgctaccccgctcgagaccaaaaattttgcgatatgaccgtaattttttggtggggcatttaccccgccactcgagatgggcgcgtccacaacctcaatgagcgcattgtcacgtgtcaagcaacgactaaccattcgacaataggaagccgctgagctcggtaagggttccttcaagtacgcctgggttcttgacaagctcaaggccgagcgtgagcgtggtatcaccatcgatattgctctctggaagttcgagactcctcgctactatgtcaccgtcattggtatgttgtcgctcttacttcatcctacttcctcatactaacatcattcagacgctcccggtcaccgt Fusarium_proliferatum_AM404131 tcgtcatcggccacgtcgactctggcaagtcgaccactgtgagtactaccctggacgatgagcttatctgccatcgtgatcctgaccaagatctggcggggtacatcttggaagacaatatgctgacatcgcttcacagaccggtcacttgatctaccagtgcggtggtatcgacaagcgaaccatcgagaagttcgagaaggttagtctcccttcgatcgcgcgtcctctgcccaccgatttcacttgcgattcgaaacgtgcctgctaccccgctcgagaccaaaaattttgcgatatgaccgtaattttttggtggggcatttaccccgccactcgagatgggcgcgtccacaacctcaatgagcgcattgtcacgtgtcaagcaacgactaaccattcgacaataggaagccgctgagctcggtaagggttccttcaagtacgcctgggttcttgacaagctcaaggccgagcgtgagcgtggtatcaccatcgatattgctctctggaagttcgagactcctcgctactatgtcaccgtcattggtatgttgtcgctcttacttcatcctacttcctcatactaacatcattcagacgctcccggtcaccgt Fusarium_proliferatum_JQ762609 tcgtcatcggccacgtcgactctggcaagtcgaccactgtgagtactaccctggacgatgagcttatctgccatcgtgatcctgaccaagatctggcggtgtacatcttggaagacaatatgctgacatcgcttcacagaccggtcacttgatctaccagtgcggtggtatcgacaagcgaaccatcgagaagttcgagaaggttagtctcccttcgatcgcgcgtcctctgcccaccgatttcacttgcgattcgaaacgtgcctgctaccccgctcgagaccaaaaactttgcgatatgaccgtaattttttggtggggcatttaccccgccactcgagatgggcgcgtccacaacctcaatgagcgcattgtcacgtgtcaagcagcgactaaccattcgacaataggaagccgctgagctcggtaagggttccttcaagtacgcctggattcttgacaagctcaaggccgagcgtgagcgtgatatcaccatcgatattgctctctggaagttcgagactcctcgctactatgtcaccgtcattggtatgttgtcgctcatacttcatcctacttcctcatactaacatcatccagacgctcccggtcaccgt Fusarium_proliferatum_JQ762608 tcgtcatcggccacgtcgactctggcaagtcgaccactgtgagtactaccctggacgatgagcttatctgccatcgtgatcctgaccaagatctggcggtgtacatcttggaagacaatatgctgacatcgcttcacagaccggtcacttgatctaccagtgcggtggtatcgacaagcgaaccatcgagaagttcgagaaggttagtctcccttcgatcgcgcgtcctctgcccaccgatttcacttgcgattcgaaacgtgcctgctaccccgctcgagaccaaaaactttgcgatatgaccgtaattttttggtggggcatttaccccgccactcgagatgggcgcgtccacaacctcaatgagcgcattgtcacgtgtcaagcagcgactaaccattcgacaataggaagccgctgagctcggtaagggttccttcaagtacgcctgggttcttgacaagctcaaggccgagcgtgagcgtggtatcaccatcgatattgctctctggaagttcgagactcctcgctactatgtcaccgtcattggtatgttgtcgctcatacttcatcctacttcctcatactaacatcatccagacgctcccggtcaccgt Fusarium_proliferatum_AM404134 tcgtcatcggccacgtcgactctggcaagtcgaccactgtgagtactaccctggacgatgagcttatctgccatcgtgatcctgaccaagatctggcggggtacatcttggaagacaatatgctgacatcgcttcacagaccggtcacttgatctaccagtgcggtggtatcgacaagcgaaccatcgagaagttcgagaaggttagtctcccttcgatcgcgcgtcctctgcccaccgatttcacttgcgattcgaaacgtgcctgctaccccgctcgagaccaaaaattttgcgatatgaccgtaattttttggtggggcatttaccccgccactcgagatgggcgcgtccacaacctcaatgagcgcattgtcacgtgtcaagcagcgactaaccattcgacaataggaagccgctgagctcggtaagggttccttcaagtacgcctgggttcttgacaagctcaaggccgagcgtgagcgtggtatcaccatcgatattgctctctggaagttcgagactcctcgctactatgtcaccgtcattggtatgtcgccgctcatacttcatcctacttcctcatactaacatcattcagacgctcccggtcaccgt Fusarium_proliferatum_JQ762610 tcgtcatcggccacgtcgactctggcaagtcgaccactgtgagtactaccctggacgatgagcttatctgccatcgtgatcctgaccaagatctggcggggtacatcttggaagacaatatgctgacatcgcttcacagaccggtcacttgatctaccagtgcggtggtatcgacaagcgaaccatcgagaagttcgagaaggttagtctcccttcgatcgcgcgtcctctgcccaccgatttcacttgcgattcgaaacgtgcctgctaccccgctcgagaccaaaaattttgcgatatgaccgtaattttttggtggggcatttaccccgccactcgagatgggcgcgtccacaacctcaatgagcgcattgtcacgtgtcaagcagcgactaaccattcgacaataggaagccgctgagctcggtaagggttccttcaagtacgcctgggttcttgacaagctcaaggccgagcgtgagcgtggtatcaccatcgatattgctctctggaagttcgagacccctcgctactatgtcaccgtcattggtatgttgtccctcatactccatcctacttcctcatactaacatcattcagacgctcccggtcaccgt Fusarium_proliferatum_AF336913 tcgtcatcggccacgtcgactctggcaagtcgaccactgtgagtactaccctggacgatgagcttatctgccatcgtgatcctgaccaagatctggcggggtacatcttggaagacaatatgctgacatcgcttcacagaccggtcacttgatctaccagtgcggtggtatcgacaagcgaaccatcgagaagttcgagaaggttagtctcccttcgatcgcgcgtcctctgcccaccgatttcacttgcgattcgaaacgtgcctgctaccccgctcgagaccaaaaattttgcgatatgaccgtaattttttggtggggcatttaccccgccactcgagatgggcgcgtccacaacctcaatgagcgcattgtcacgtgtcaagcagcgactaaccattcgacaataggaagccgctgagctcggtaagggttccttcaagtacgcctgggttcttgacaagctcaaggccgagcgtgagcgtggtatcaccatcgatattgctctctggaagttcgagactcctcgctactatgtcaccgtcattggtatgttgtcgctcatacttcatcctacttcctcatactaacatcattcagacgctcccggtcaccgt Fusarium_proliferatum_AM397466 tcgtcatcggccacgtcgactctggcaagtcgaccactgtgagtactaccctggacgatgagcttatctgccatcgtgatcctgaccaagatctggcggggtacatcttggaagacaatatgctgacatcgcttcacagaccggtcacttgatctaccagtgcggtggtatcgacaagcgaaccatcgagaagttcgagaaggttagtctcccttcgatcgcgcgtcctctgcccaccgatttcacttgcgattcgaaacgtgcctgctaccccgctcgagaccaaaaattttgcgatatgaccgtaattttttggtggggcatttaccccgccactcgagatgggcgcgtccacaacctcaatgagcgcattgtcacgtgtcaagcagcgactaaccattcgacaataggaagccgctgagctcggtaagggttccttcaagtacgcctgggttcttgacaagctcaaggccgagcgtgagcgtggtatcaccatcgatattgctctctggaagttcgagactcctcgctactatgtcaccgtcattggtatgttgtcgctcatactccatcctacttcctcatactaacatcattcagacgctcccggtcaccgt Fusarium_proliferatum_AM397467 tcgtcatcggccacgtcgactctggcaagtcgaccactgtgagtactaccctggacgatgagcttatctgccatcgtgatcctgaccaagatctggcggggtacatcttggaagacaatatgctgacatcgcttcacagaccggtcacttgatctaccagtgcggtggtatcgacaagcgaaccatcgagaagttcgagaaggttagtctcccttcgatcgcgcgtcctctgcccaccgatttcacttgcgattcgaaacgtgcctgctaccccgctcgagaccaaaaattttgcgatatgaccgtaattttttggtggggcatttaccccgccactcgagatgggcgcgtccacaacctcaatgagcgcattgtcacgtgtcaagcagcgactaaccattcgacaataggaagccgctgagctcggtaagggttccttcaagtacgcctgggttcttgacaagctcaaggccgagcgtgagcgtggtatcaccatcgatattgctctctggaagttcgagactcctcgctactatgtcaccgtcattggtatgttgtcgctcatactccatcctacttcctcatactaacatcattcagacgctcccggtcaccgt Fusarium_proliferatum_AM397469 tcgtcatcggccacgtcgactctggcaagtcgaccactgtgagtactaccctggacgatgagcttatctgccatcgtgatcctgaccaagatctggcggggtacatcttggaagacaatatgctgacatcgcttcacagaccggtcacttgatctaccagtgcggtggtatcgacaagcgaaccatcgagaagttcgagaaggttagtctcccttcgatcgcgcgtcctctgcccaccgatttcacttgcgattcgaaacgtgcctgctaccccgctcgagaccaaaaattttgcgatatgaccgtaattttttggtggggcatttaccccgccactcgagatgggcgcgtccacaacctcaatgagcgcattgtcacgtgtcaagcagcgactaaccattcgacaataggaagccgctgagctcggtaagggttccttcaagtacgcctgggttcttgacaagctcaaggccgagcgtgagcgtggtatcaccatcgatattgctctctggaagttcgagactcctcgctactatgtcaccgtcattggtatgttgtcgctcatactccatcctacttcctcatactaacatcattcagacgctcccggtcaccgt Fusarium_proliferatum_AM397470 tcgtcatcggccacgtcgactctggcaagtcgaccactgtgagtactaccctggacgatgagcttatctgccatcgtgatcctgaccaagatctggcggggtacatcttggaagacaatatgctgacatcgcttcacagaccggtcacttgatctaccagtgcggtggtatcgacaagcgaaccatcgagaagttcgagaaggttagtctcccttcgatcgcgcgtcctctgcccaccgatttcacttgcgattcgaaacgtgcctgctaccccgctcgagaccaaaaattttgcgatatgaccgtaattttttggtggggcatttaccccgccactcgagatgggcgcgtccacaacctcaatgagcgcattgtcacgtgtcaagcagcgactaaccattcgacaataggaagccgctgagctcggtaagggttccttcaagtacgcctgggttcttgacaagctcaaggccgagcgtgagcgtggtatcaccatcgatattgctctctggaagttcgagactcctcgctactatgtcaccgtcattggtatgttgtcgctcatactccatcctacttcctcatactaacatcattcagacgctcccggtcaccgt Fusarium_proliferatum_AM397468 tcgtcatcggccacgtcgactctggcaagtcgaccactgtgagtactaccctggacgatgagcttatctgccatcgtgatcctgaccaagatctggcggggtacatcttggaagacaatatgctgacatcgcttcacagaccggtcacttgatctaccagtgcggtggtatcgacaagcgaaccatcgagaagttcgagaaggttagtctcccttcgatcgcgcgtcctctgcccaccgatttcacttgcgattcgaaacgtgcctgctaccccgctcgagaccaaaaattttgcgatatgaccgtaattttttggtggggcatttaccccgccactcgagatgggcgcgtccacaacctcaatgagcgcattgtcacgtgtcaagcagcgactaaccattcgacaataggaagccgctgagctcggtaagggttccttcaagtacgcctgggttcttgacaagctcaaggccgagcgtgagcgtggtatcaccatcgatattgctctctggaagttcgagactcctcgctactatgtcaccgtcattggtatgttgtcgctcatacttcatcctacttcctcatactaacatcatccagacgctcccggtcaccgt Fusarium_proliferatum_AM397460 tcgtcatcggccacgtcgactctggcaagtcgaccactgtgagtactaccctggacgatgagcttatctgccatcgtgatcctgaccaagatctggcggggtacatcttggaagacaatatgctgacatcgcttcacagaccggtcacttgatctaccagtgcggtggtatcgacaagcgaaccatcgagaagttcgagaaggttagtctcccttcgatcgcgcgtcctctgcccaccgatttcacttgcgattcgaaacgtgcctgctaccccgctcgagaccaaaaattttgcgatatgaccgtaattttttggtggggcatttaccccgccactcgagatgggcgcgtccacaacctcaatgagcgcattgtcacgtgtcaagcagcgactaaccattcgacaataggaagccgctgagctcggtaagggttccttcaagtacgcctgggttcttgacaagctcaaggccgagcgtgagcgtggtatcaccatcgatattgctctctggaagttcgagactcctcgctactatgtcaccgtcattggtatgttgtcgctcatacttcatcctacttcctcatactaacatcattcagacgctcccggtcaccgt Fusarium_proliferatum_AM397465 tcgtcatcggccacgtcgactctggcaagtcgaccactgtgagtactaccctggacgatgagcttatctgccatcgtgatcctgaccaagatctggcggggtacatcttggaagacaatatgctgacatcgcttcacagaccggtcacttgatctaccagtgcggtggtatcgacaagcgaaccatcgagaagttcgagaaggttagtctcccttcgatcgcgcgtcctctgcccaccgatttcacttgcgattcgaaacgtgcctgctaccccgctcgagaccaaaaattttgcgatatgaccgtaattttttggtggggcatttaccccgccactcgagatgggcgcgtccacaacctcaatgagcgcattgtcacgtgtcaagcagcgactaaccattcgacaataggaagccgctgagctcggtaagggttccttcaagtacgcctgggttcttgacaagctcaaggccgagcgtgagcgtggtatcaccatcgatattgctctctggaagttcgagactcctcgctactatgtcaccgtcattggtatgttgtcgctcatacttcatcctacttcctcatactaacatcattcagacgctcccggtcaccgt Fusarium_proliferatum_AM397471 tcgtcatcggccacgtcgactctggcaagtcgaccactgtgagtactaccctggacgatgagcttatctgccatcgtgatcctgaccaagatctggcggggtacatcttggaagacaatatgctgacatcgcttcacagaccggtcacttgatctaccagtgcggtggtatcgacaagcgaaccatcgagaagttcgagaaggttagtctcccttcgatcgcgcgtcctctgcccaccgatttcacttgcgattcgaaacgtgcctgctaccccgctcgagaccaaaaattttgcgatatgaccgtaattttttggtggggcatttaccccgccactcgagatgggcgcgtccacaacctcaatgagcgcattgtcacgtgtcaagcagcgactaaccattcgacaataggaagccgctgagctcggtaagggttccttcaagtacgcctgggttcttgacaagctcaaggccgagcgtgagcgtggtatcaccatcgatattgctctctggaagttcgagactcctcgctactatgtcaccgtcattggtatgttgtcgctcatacttcatcctacttcctcatactaacatcattcagacgctcccggtcaccgt Fusarium_proliferatum_AM404117 tcgtcatcggccacgtcgactctggcaagtcgaccactgtgagtactaccctggacgatgagcttatctgccatcgtgatcctgaccaagatctggcggggtacatcttggaagacaatatgctgacatcgcttcacagaccggtcacttgatctaccagtgcggtggtatcgacaagcgaaccatcgagaagttcgagaaggttagtctcccttcgatcgcgcgtcctctgcccaccgatttcacttgcgattcgaaacgtgcctgctaccccgctcgagaccaaaaattttgcgatatgaccgtaattttttggtggggcatttaccccgccactcgagatgggcgcgtccacaacctcaatgagcgcattgtcacgtgtcaagcagcgactaaccattcgacaataggaagccgctgagctcggtaagggttccttcaagtacgcctgggttcttgacaagctcaaggccgagcgtgagcgtggtatcaccatcgatattgctctctggaagttcgagactcctcgctactatgtcaccgtcattggtatgttgtcgctcatacttcatcctacttcctcatactaacatcattcagacgctcccggtcaccgt Fusarium_proliferatum_AM404119 tcgtcatcggccacgtcgactctggcaagtcgaccactgtgagtactaccctggacgatgagcttatctgccatcgtgatcctgaccaagatctggcggggtacatcttggaagacaatatgctgacatcgcttcacagaccggtcacttgatctaccagtgcggtggtatcgacaagcgaaccatcgagaagttcgagaaggttagtctcccttcgatcgcgcgtcctctgcccaccgatttcacttgcgattcgaaacgtgcctgctaccccgctcgagaccaaaaattttgcgatatgaccgtaattttttggtggggcatttaccccgccactcgagatgggcgcgtccacaacctcaatgagcgcattgtcacgtgtcaagcagcgactaaccattcgacaataggaagccgctgagctcggtaagggttccttcaagtacgcctgggttcttgacaagctcaaggccgagcgtgagcgtggtatcaccatcgatattgctctctggaagttcgagactcctcgctactatgtcaccgtcattggtatgttgtcgctcatacttcatcctacttcctcatactaacatcattcagacgctcccggtcaccgt Fusarium_proliferatum_AM404128 tcgtcatcggccacgtcgactctggcaagtcgaccactgtgagtactaccctggacgatgagcttatctgccatcgtgatcctgaccaagatctggcggggtacatcttggaagacaatatgctgacatcgcttcacagaccggtcacttgatctaccagtgcggtggtatcgacaagcgaaccatcgagaagttcgagaaggttagtctcccttcgatcgcgcgtcctctgcccaccgatttcacttgcgattcgaaacgtgcctgctaccccgctcgagaccaaaaattttgcgatatgaccgtaattttttggtggggcatttaccccgccactcgagatgggcgcgtccacaacctcaatgagcgcattgtcacgtgtcaagcagcgactaaccattcgacaataggaagccgctgagctcggtaagggttccttcaagtacgcctgggttcttgacaagctcaaggccgagcgtgagcgtggtatcaccatcgatattgctctctggaagttcgagactcctcgctactatgtcaccgtcattggtatgttgtcgctcatacttcatcctacttcctcatactaacatcattcagacgctcccggtcaccgt Fusarium_sp._AF160283 tcgtcatcggccacgtcgactctggcaagtcgaccactgtgagtactacccctgacgatgagcttatctgccatcgtaatcctgaccaagatctggcggggtgtatctcaaaagacaacatgctgacatagcttcacagaccggtcacttgatctaccagtgcggtggtatcgacaagcgaaccatcgagaagttcgagaaggttagtctcccttcgatcgcgcgtcctttgcccatcgatttcccctacgactcgaaacgtgcccgctaccccgctcgagaccaaaaattttgcgatatgaccgtaattttttggtggggcatttaccccgccactcgagatgggcgcgtccacaatctcaatgagcgcatcgtaacgtgccaagcagtcactaaccatccgacaataggaagccgctgagctcggtaagggttccttcaagtacgcctgggttcttgacaagctcaaggccgagcgtgagcgtggtatcaccatcgatatcgctctctggaagttcgagactcctcgctactatgtcaccgtcattggtatgttgtcgcccatgcttcattcttcttcctcgtactaacatcactcagacgctcccggtcaccgt Fusarium_sp._AF160288 tcgtcatcggccacgtcgactctggcaagtcgaccactgtgagtactacccttgacgatgagcttatctgccatcgtaatcctgaccaagatctggccgggtatatctcaaaagacaacatgctgacatcgcttcacagaccggtcacttgatctaccagtgcggtggtatcgacaagcgaaccatcgagaagttcgagaaggttagtctcccttcgatcgcgcgtcctttgcccaccgatttcccctacgactcgaaacgtgcccgctaccccgctcgagaccaaaaattttgcgacatgaccgtaattttttggtggggcatttaccccgccactcgagatgggcgcgtccacaacctcaatgagcgcatcgtcacgtgtcaagcagccactaaccattcgacaataggaagccgctgagctcggtaagggttccttcaagtacgcctgggttcttgacaagctcaaggccgagcgtgagcgtggtatcaccatcgatattgctctctggaagttcgagactcctcgctactatgtcaccgtcattggtatgttgtcgctcatgcttcattctacttactcgtactaacatcactcagacgctcccggtcaccgt ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 617; END; BEGIN TREES; Title Bayesian_tree_form_TEF_analysis; LINK Taxa = Taxa; TRANSLATE 1 Fusarium_proliferatum_AM404116_, 2 Fusarium_proliferatum_AM404122, 3 Fusarium_proliferatum_AM404132, 4 Fusarium_proliferatum_JQ762604, 5 Fusarium_proliferatum_JQ762612, 6 Fusarium_proliferatum_AM397477, 7 Fusarium_proliferatum_AM404118, 8 Fusarium_proliferatum_JQ762615, 9 Fusarium_proliferatum_JQ762613, 10 Fusarium_proliferatum_JQ762605, 11 Fusarium_proliferatum_JQ762606, 12 Fusarium_proliferatum_JQ762607, 13 Fusarium_proliferatum_JQ762611, 14 Fusarium_proliferatum_JQ762614, 15 Fusarium_proliferatum_AM397464, 16 Fusarium_proliferatum_AM404129, 17 Fusarium_proliferatum_AM404130, 18 Fusarium_proliferatum_AM404131, 19 Fusarium_proliferatum_JQ762609, 20 Fusarium_proliferatum_JQ762608, 21 Fusarium_proliferatum_AM404134, 22 Fusarium_proliferatum_JQ762610, 23 Fusarium_proliferatum_AF336913, 24 Fusarium_proliferatum_AM397466, 25 Fusarium_proliferatum_AM397467, 26 Fusarium_proliferatum_AM397469, 27 Fusarium_proliferatum_AM397470, 28 Fusarium_proliferatum_AM397468, 29 Fusarium_proliferatum_AM397460, 30 Fusarium_proliferatum_AM397465, 31 Fusarium_proliferatum_AM397471, 32 Fusarium_proliferatum_AM404117, 33 Fusarium_proliferatum_AM404119, 34 Fusarium_proliferatum_AM404128, 35 Fusarium_sp._AF160283, 36 Fusarium_sp._AF160288; TREE Bayesian_tree_from_TEF_analysis = ((((4,3,2,1),(5,7,6)),23,21,34,33,32,31,(19,20),28,22,27,26,25,24,30,((8,14,9,13,12,11,10),18,17,16,15),29),(36,35))[% ] [% ] [% setBetweenBits = selected ]; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 617; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 617; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1342013994913; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 6532738094170798973; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 4283196016695703737; mqVersion 275; checksumv 0 3 150415091 null getNumChars 617 numChars 617 getNumTaxa 36 numTaxa 36 short true bits 1152921504606846991 states 15 sumSquaresStatesOnly 471063.0 sumSquares -7.072020509258399E21 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1 errorReportedDuringRun; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 191; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1280 918; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #6532738094170798973 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #6532738094170798973; getWindow; tell It; newAssistant #mesquite.lists.DefaultTaxaOrder.DefaultTaxaOrder; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; getTable; tell It; rowNamesWidth 501; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1089 851; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.ibeam; endTell; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.ManageTrees.ManageTrees; tell It; showTrees 0 #mesquite.lists.TreesList.TreesList; tell It; setTreeBlock 1; getWindow; tell It; newAssistant #mesquite.lists.NumForTreeList.NumForTreeList; tell It; suppress; setValueTask #mesquite.trees.NumberOfTaxa.NumberOfTaxa; desuppress; endTell; newAssistant #mesquite.lists.TreeListRooted.TreeListRooted; newAssistant #mesquite.lists.TreeListPolys.TreeListPolys; newAssistant #mesquite.lists.TreeListPolyAssumption.TreeListPolyAssumption; getTable; tell It; rowNamesWidth 205; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1089 851; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TreesList.TreesListWindow.ibeam; endTell; endTell; showWindow; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #6532738094170798973 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 922.1342012997177.7140136515044334736; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1089 851; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.interchange; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 6; orientRight; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #4283196016695703737 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; rowNamesWidth 126; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1089 851; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;