NEXUS [File created by TreeBASE: 7/26/07 21:07:04] [Matrix accession#: M2113] BEGIN TAXA; TITLE M2113; DIMENSIONS NTAX=68; TAXLABELS Rubus_ulmifolius Rubus_saxatilis Rubus_idaeus Rubus_caesius Rosa_woodsii Rosa_willmottiae Rosa_wichurana Rosa_virginiana Rosa_tomentosa_VW142_2 Rosa_tomentosa_VW142_1 Rosa_tomentella_VW146_1 Rosa_suffulta Rosa_subcanina_VW141_2 Rosa_subcanina_VW141_1 Rosa_stylosa Rosa_stellata Rosa_spinosissima Rosa_sicula_VW161_6 Rosa_sicula_VW161_3 Rosa_sicula_VW161_2 Rosa_sicula_VW161_1 Rosa_sherardii Rosa_sertata Rosa_sericea Rosa_rugosa Rosa_rubiginosa Rosa_roxburghii Rosa_pseudoscabriuscula_C1_3 Rosa_pseudoscabriuscula_C1_2 Rosa_pseudoscabriuscula_C1_1 Rosa_primula Rosa_persica Rosa_palustris Rosa_odorata Rosa_nitida Rosa_multiflora Rosa_multibracteata Rosa_montana_C8_2 Rosa_montana_C8_1 Rosa_mollis Rosa_micrantha_C2_6 Rosa_micrantha_C2_4 Rosa_micrantha_C2_3 Rosa_majalis Rosa_laxa Rosa_laevigata Rosa_jundzillii_VW356_2 Rosa_jundzillii_VW356_1 Rosa_hugonis Rosa_helenae Rosa_gallica Rosa_foetida Rosa_ecae Rosa_dumalis Rosa_columnifera Rosa_chinensis Rosa_carolina Rosa_canina Rosa_bracteata Rosa_blanda Rosa_beggeriana Rosa_banksiae Rosa_arkansana_II Rosa_arkansana_I Rosa_altaica Rosa_abietina_C9_3 Rosa_abietina_C9_2 Rosa_abietina_C9_1 ; END; BEGIN CHARACTERS; TITLE M2113; DIMENSIONS NCHAR=264; FORMAT DATATYPE = DNA MISSING = N GAP = - ; MATRIX Rubus_ulmifolius TCGAAACCTGCCCAGCAGAACGACCCGAGTACATGTTTCAA-CGCTTGGGGG-CGAAGGGTCTTTCGGCTCCTCGTCCC-TTTTCCCGGGAGGCAATCGTCTT-GTGTGTTGCATCTCGATGCTCGTACTTGAACGACCCTCTCGGGCGTACAAACGAACACCGGCGTGTATTGCGCCAAGGATCTTGAATGAAAGAAGCGTTCCCCC-GTCGCCCCGGAAACG-GTGTGCG-TGCGGT-AGGTTACGTCATCTTCAATATGTC Rubus_saxatilis TCGAAACCTGCCCAGCAGAACGACCCGAGTACATGTTTCAA-CGCTTGGGGG-CGAAGGGTCTTACANCTCCTCGTCCC-TTTTCTCGGGAGGCAATCGTCTT-GTGTGTTGCATCTCGATGCTCGCACTAGAACGACCCTCTCGGGCGTACAAACGAACACCGGCGTGTATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTCCCCC-GTCGTCCCGGAAACG-GTGTGCG-TACGGT-TGGTTACGTCATCTTCAATATGTC Rubus_idaeus TCGAAACCTGCCCAGCAGAACGACCCGAG-ACATGTTTCAA-CGCTTGGGGG-CGAAGGGTCTTACAGCTCCTCGTCCC-TTTTCTCGGGAGGCAATCGTCTT-GTGTGTTGCATCTCGATGCTCGCACTAGAACGACCCTCTCGGGCGTACAAACGAACACCGGCGTGTATTGCGCCAAGG-ACTTGAATGAAAGA-GCGTTCCCCC-GTCGTCCCGGAAACG-GTGTGCG-TGCGGT-TGGTTACGTCATCTTCAATATGTC Rubus_caesius TCGAAACCTGCCCAGCAGAACGACCCGAG-ACATGTTTCAA-CGCTTGGGGG-CGAAGGGTCTTTCGGCTCCTCGTCCC-TTTTCTCGGGAGGCAATCGTCTT-GTGCGTTGCATCTCGATGCTCGCACTTGAACGACCCTCTCGGGCGTACAAACGAACACCGGCGTGTATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTCCCCC-GCCGCCCCGGAAACG-GTGTGCG-TGCGGT-GGGTTACGTCATCTTCAATATGTC Rosa_woodsii TCGAAACCTGCCTAGCAGAACGACCCGAGAACATGTTTCAA-CGCTTGGGGG-CGGAGGGTCTTGCGGCTCTGCGCCCCCTTATCCTAGGAGGCAAGTGTCTT-GCGTGTTGCATTTCGGTGCTTGTGCTTGACCGACCCTCCTAGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTCCCCC-GCCTTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_willmottiae TCGAAACCTGCCTAGCAGAACGACCCGAGAACATGTTTCAA-YGCTTGGGGG-CGGAGGGTCTTGCGGCTCTGCGCCCCCTTATCCTAGGAGGCAAGTGTCTT-GCGTGTTGCATTTCGGTGCTTGCGCTTGACCGACCCTCCCGGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTTCCCCCGCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_wichurana TCGAAACCTGCCTAGCAGAACGACCCGAGAACATGTTTCAA-CGCTTGGGGG-CGGAGGGTCTTGCGGCTCTGCGCCCCCTTATCCTAGGAGGCAAGTGTCTT-GCGTGTTGCATTTCGGTGCTTTCGCTTGATCGACCCTCCCAGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTCCMCCCGCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_virginiana TCGAAACCTGCCTAGCAGAACGACCCGAGCACATGTTTCAA-CGCTTGGGGG-CGGAGGGTCTTGCGGCTCTGCGCCCCCTCATCCTAGGAGGCAAGTGTCTT-GCGCGTTGCATTTCGGTGCTTGCGCTTGACCGACCCTCCCGGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTTCCCCCGCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTGTTCAATATGTC Rosa_tomentosa_VW142_2 TCGAAACCTGCCTAGCAGAACgACCCGAGAACATgTTTCAA-CGCTGGGGGG-CGGAGGgTCTTGCGGCTCTGCgCCCCCTTATCCTaGGAGGCGAGTGTCTT-GCGTGTTGCACTTCGGtGcTTTCGCTTGACCGACCCTCCCAGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATgAAAGA-GCGTTCCCCC-GCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGgTTTCGTCGTCTTCAATaTGTC Rosa_tomentosa_VW142_1 TCGAAACCTGCCTAGCAGAACGACCCGAGAACATGTTTCAA-CGCTGGGGGGGCGGAGGgTCTTGCGGCTCTGCGCCCCCTTATCCTAGGAGGCGAGTNTCTT-GCGTGTTGCACTTCGGtgCTTTCGCTTGACCGACCCTCCCAGGCGTAC---TGAACACCGGCGTgAATTGCGCCAAggaACTTGaAtGAAAGa-GCGTTCCCCC-GCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGgTTTCgTCgTCTTCAATATGTC Rosa_tomentella_VW146_1 TCGAAACCTGCCTAGCAGAACGACCCGAGAACATGTTTCAA-CGCTGGGGGGGCGGAGGgTcTTGCGGCTCTGCGCCCCCTTATCCTAGGAGGCGAGTGTCTT-GCGTGTTGCACTTCGGtGcTTTCGCTTGACCGACCCTCCCAGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAaaGA-GCGTTCCCCC-GCCGTCCCGGAGACG-GTGcTCG-TGCGGG-tGGtttCGTCgTCtTCAATATGTC Rosa_suffulta TCGAAACCTGCCTAGCAGAACGACCCGAGHACATGTTTCAA-CGCTTGGGGG-CG-AGG-TCTTGCGGCTCTGCGCCCCCTTATCCTAGGAGGCAAGTCTCTT-GCGTGTTGCATTTCGGTGCTTGCGCTTGATCGACCCTCCCAGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTCCCCC-GCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_subcanina_VW141_2 TCGAAACCTGCCTAGCAGAACGACCCGAGaACATGTTTCAA-CGCTGGGGGG-CGGAGGGTCTTGCGGCTCTGCGCCCCCTTATCCTAGGAGGCGAGTGTCTT-GCGTGTTGCACTTCGGTGCttTCGCTTGACCGACCCTCCCAGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGaATGAAAGA-GCGTTCCCCc-GcCGTCCCGGAGACG-GTGCTCG-TGCGGG-tGGTTTCGTCCTCTTCAATATGTC Rosa_subcanina_VW141_1 TCGAAACCTGCCTAGCAGAACGACCCGAGAACATGTTTCAA-CGCTGGGGGGGCGGAGGGTCTTGCGGCTCTGCGCCCCCTTATCCTAGGAGGCGAGTGTCTT-GCGTGTTGCACTTCGGTGcTTTCGCTTGACCGACCCTCCCAGGCGTAC---TgAACACCGGCGTGAATTGCGCCAAggACCTTGAATGAAAGA-GCGTTCCCCC-GCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_stylosa TCGAAACCTGCCTAGCAGAACGACCCGAGAACATGTTTCAA-CGCTGGGGGG-CGGAGGGTCTTGCGGCTCTGCGCCCCCTTATCCTAGGAGGCGAGTGTCTT-GCGTGTTGCACTTCGGTGCTTTCGCTTGACCGACCCTCCCAGGCGTAC---CGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTCCCCC-GCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_stellata TCGAAACCTGCCTAGCAGAACGACCCGAGAACATGTTTCAA-CGCTTGGGGG-CGGAGGGTCTTGCGGCTCTGCGCCCCCTTATCCCAGGAGGCAAGTGTCTT-GCGTGTTGCATTTCGGTGCTTCCGCTTGACCGACCCTCCCGGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTCCCCC-GCCGTCCCGGAGACG-GTGCACG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_spinosissima TCGAAACCTGCCTAGCAGAACGACCCGAGAACATGTTTCAA-CGCTTGGGGG-CGGAGGGTCTTGCGGCTCTGYGCCCCCTTATCCTAGGAGGCAAGTGTCTT-GCGTGTTGCATTTCGGTGCTTKCGCTTGACCGACCCTCCYWGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTCCCCC-GCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_sicula_VW161_6 TCGAAACCTGCCTAGCAgAACgACCCGaGAaCATGTTTCAA-CGcTGGGGGG-CGGAGGGTCTTGCGGCTCTGCGCCCCCTTATCCTaGGAGGCGAGTNTCTT-GCGTGTTGCACTtCGGtgCTtTCGCTTGACCGACCCTCCCAGGCGTAC---TGAAcAccGGCGTGAATTGCGCCAAGGAACTTGAaTGAAAGA-GCGTTCCCCC-GcCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTCCGTCGTCTTCAATATGTC Rosa_sicula_VW161_3 TCGAAACCTGCCTAgCAgAACGACCCGAGAACATGTTTCAA-cGCTGGGGGGGCGGAgGGTCTTGCGGCTCTGCGCCCCCTTATCCTaGGAGGCGAGTGTCTT-GCGTGTAGCACTTCGGTGCTTTCGCTTGACCGACCCTCCCAGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGaACTTGaATGAAAGA-GCGTTCCCCC-gCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTTGTCGTCTTCAATATGTC Rosa_sicula_VW161_2 TCGAAACCTGCCTAgCAGAACGACCCGAGAACATGTTTCAA-CGctGGGGGG-CGGAGgGTCTtGCGGCTCTGCGCCCccTTATCcTAGGAGGCGaGTGTCtT-GCGTGTtGcACTTCGgTGCTTTCGCttgACcGACCCTcCCAGGCGTAc---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GcGTTCCCCC-GcCGTcCCGGAGACg-GTGcTcG-TgCGGG-TGGTTTCGTCGTCTTCAATAtGTC Rosa_sicula_VW161_1 TCGAAACCTGCCTAGCAGAACGACCCGAGAACATGTTTCAA-CGCTGGGGGG-CGGAGGGTCTTGCGGCTCTGCGCCCCCTTATCCTaGGAGGCGAGTGTCTT-GCGTGTTGCACTTCGGTGCTTTCGCTTGACCGACCCTCCCAGGCGTAC---TGAACACCGGCGTgAATTGCGCCAAGGaACTTGAATgaaaga-GCGTTCCCCC-GcCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_sherardii TCGAAACCTGBBTAGCAGAACGACCCGAGAACATGTTTCAA-CGCTGGGGGG-CGGAGGGTCTTGCGGCTCTGCGCCCCCTTATCCTAGGAGGCGAGTGTCTTTGCGTGTTGCACTTCGGTGCTTTCGCTTGACCGACCCTCCCAGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTCCCCC-GCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_sertata TCGAAACCTGCCTAGCAGAACGACCCGAGCACATGTTTCAA-CGCTTGGGGG-CGNAGGTTCTTGCGGCTCTGCGCCCCCTCATCCTAGGAGGCNAGTCTCTT-GCGCGTTGCATTTCGGTGCTTGCGCTTGACCGACCCTCCCGGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTTCACCCGCCNNCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_sericea TCGAAACCTGCCTAGCAGAACGACCCGAGAACATGTTTCAA-CGCTCGGGGG-CGTAGGGTCTTGCGGCTCTGTGCCCCCTCATCCTAGGAGGCAAGTSTCTT-GCGTGTTGCATTTCGGTGCTTTCGCTTGACCGACCCTCCTGGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTCCCCC-GCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_rugosa TCGAAACCTGCCTAGCAGAACGACCCGAGAACATGTTTCAA-CGCTTGGGGG-CGGAGGGTCTTGCGGCTCTGCGCCCCCTCATCCTAGGAGGCAAGTGTCTT-GCGCGTTGCATTTCGGTGCTTGCGCTTGACCGACCCTCCCGGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTTCCCCCGCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_rubiginosa TCGAAACYTGSBTAGCAGAACGACCCGAGAACATGTTTCAA-CGCTGGGGGG-CGGAGGGTCTTGCGGCTCTGCGCCCCCTTATCCTAGGAGGCGAGTGTCTT-GCGTGTCGCACTTCGGTGCTTTCGCTTGACCGACCCCCCCAGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTCCCCCC-GCCGTCCCGGAGACGCGCGCCCG-CGCGGG-CGGTTTCGTCGTCTTCAATATGTC Rosa_roxburghii TCGAAACCTGCCTAGCAGAACGACCCGAGAACATGTTTCAA-CGCTGGGGGG-CGGAGGGTCTTGCGGCTCTGCGCCCCCTTATCCTAGGAGGCAAGTNTCTT-GCGTGTTGCATTTCGGTGCTTGCGCTTGATCGACCCTCCCAGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTCCCCC-GCCGTCCCGGAGACG-GTGATCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_pseudoscabriuscula_C1_3 TCGAAACCTGCCTAGCAGAACGACCCGAGAACATGTTTCAA-CGCTGGGGGGGCGGAGGGTCTTGCGGCTCTGCGCCCCCTTATCCTaGGAGGCGAGTGTCTT-GCGTGTTGCACTTCGGTgCTTTCGCTTGACCGACCCTCCCAGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGaACTTGAATGAAAGA-GCGTTCCCCC-GCCGCCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_pseudoscabriuscula_C1_2 TCGAAACCTGCCTaGCagaaCGACCCGaGAACaTGTTTCAA-CGCTGGGGGG-CGGagGGTCTTGCGGCTCTGCGCCCCCTTATCCTAgGaGGCGAGTGTCTT-GCGTGTTGCACTTCGGTGcTTTCGCTTGACCGACCCTCCCAGGCGTAC---TGAACACCGGCGTgAATTGCGCCAAGGAACTTgAAtgaaaGA-GCGTTCCCCC-GcCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_pseudoscabriuscula_C1_1 TCGAAACCTGCCTAGCAGAACGACCCGaGaaCaTGTTTCAA-CGCTgGGGGG-CGGAGGGTCTTGCGGCTCTGCGCCCCCTTATCCTAGGAGGCGAGTTTCTT-GCGTGTTGCACTTCGGTGcTTTCGCTTgACCGACCCTCCCAGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGaaaGa-GCGTTCCCCC-GCCGTCCCGGAGACG-GTGCtCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTc Rosa_primula TCGAAACCTGCCTAGcAGAACGACCCGAGAACATGTTTCAA-CGCTTGGGGG-CGGAGGGTCTTGCGGCTCTGTGCCCCCTTATCCTAGGAGGCAAGTGTCTT-GCGTGTTGCATTTCGGTGCTTTCGCTTGACCGACCCTCCTGGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTCCCCC-GCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_persica TCGAAACCTGCCTAGCAGAACGACCCGAGAACATGTTTCAA-CGCTTGGGGG-CGGAGGGTCTTGCGGCTCTGCGCCCCCTTATCCTAGGAGGCAAGTCTCTT-GCGGGTTGCATTTCGGTGCTTCCCCTTGACCGACCCTCCCGGGCGTAC---CGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTCCCCC-GCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_palustris TCGAAACCTGCCTAGCAGAACGACCCGAGAACATGTTTCAA-CGCTTGGGGG-CGGAGGGTCTTGCGGCTCTGCGCCCCCTCATCCTAGGAGGCAAGTGTCTT-GCGCGTTGCATTTCGGTGCTTGCGCTTGACCGACCCTCCCGGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTCCCCC-GCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_odorata TCGAAACCTGCCTAGCAGAACGACCCGAGAACATGTTTCAA-CGCTTGGGGG-CGGAGGGTCYTGYGGCTCTGCGCCCCCTTATCCTAGGAGGCAAGTGTCTT-GYGTGTTGCATTTCGGTGCTTTCGCTTGATTGACCCTCCCAGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTCCCCC-GCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_nitida TCGAAACCTGCCTAGCAGAACGACCCGAGAACATGTTTCAA-CGCTTGGGGG-CGGAGGGTCTTGCGGCTCTGCGCCCCCTCATCCTAGGAGGCAAGTGTCTT-GCGCGTTGCATTTCGGTGCTTGCGCTTGACCGACCCTCCCGGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTTCCCCCGC-GTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_multiflora TCGAAACCTGCCTAGCAGAACGACCCGAGAACATGTTTCAA-CGCTTGGGGG-CGGAGGGTCTTGCGGCTCTGCGCCCCCTTATCCTAGGAGGCAAGTGTCTT-GCGTGTTGCATTTCGGTGCTTTCGCTTGATCGACCCTCCCAGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTCCCCC-GCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_multibracteata TCGAAACCTGCCTAGCAGAACGACCCGAGAACATGTTTCAATCGCTTGGGGG-CGGAGGGTCTTGCGGCTCTGCGCCCCCTTATCCTAGGAGGCAAGTGTCTT-GCGTGTTGCATTTCGGTGCTTGCGCTTGACCGACCCTCCCGGGCGTAC---TGAACACCGGCGTCAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTTCCCCCGCNGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_montana_C8_2 TCGAAaCCTGCCTAGCAGAAcGACCCgAGAACATGTTTCAA-cGCTGGGGGGGcGGAGGgTCTTGCGGCTCTGCGCCCCCTTATCCTaGGAGGCGAGTGTCTT-GCGTGTTGCACTTCGGTGCTTTCGCTTGACCGACCCTCCCAGGCGTAC---TGAACACCGGCGTGAAttGCGCCaAGGAActtGaatGaaaGa-GCGTTCCCCC-GCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_montana_C8_1 TCGAAACCTGCCTAGCAGAACgACCCGAGAACaTGTTTCGA-CGcTGGGGGG-CGGAGGGTCTTGCGGCTCTGCgCCCCCTTATCCtAGGAGGCgaGTNTCTT-GCGTGTTGcaCTTCGGTGCTTTCGCTTGACCGACCCTcCcAGGCGTAT---cGAAcACCGGcGTGAATTGCGCCAAGgAaCtTGaATGAAAGA-GCGTTCCCCC-GcCGTCCCGGAGACG-GTGCTCG-TGCGGG-tGgttTCGTCgTCtTCaaTATGTC Rosa_mollis TCGAAACCTGCCTAGCAGAACGACCCGAGAACATGTTTCAA-CGCTGGGGGGGCGgAGGgTCTTGCGGCtCTGCgCCCCCTTaTCcTaGGAGGCGAGTGTCTT-GCGTGTTGCACTTCGGTGCTTTCGCTTGACCGACCCTCCCAGGCGtAC---TGAACACCGGCGTGAATTGCGCCAAGgAACttGAATgAAAgA-GCGTTCCCCC-GCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_micrantha_C2_6 TCGAAACCTGCCTAGCAGAACgACCCGAGaACATGTTTCAA-CGCTGGGGGG-CGGAGGGTCTTGCGGCTCTGCGCCCCCTTATCCTaGGAGGCGAGTGTCTT-GCGTgTTGCACTTCGGTGCTTTCGCTTGACCGACCCTCCCAGGCGTAT---CGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATgaAAGA-GCGTTCCCCC-GcCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_micrantha_C2_4 TCGAAACCTGCCTAGCAGAACGACCCGAGAACATGTTTCAA-CGcTGGGGGGGCGGAGGGTCTTGCGGCTCTGCGCCCCCTTATCCTAGGAGGCGAGTgTCTT-GCGTGTTGCACTTCGGTGCTTTCGCTTGACCGACCCTCCCAGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGaaaGA-GCGTTCCCCC-GcCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_micrantha_C2_3 TCGAAACCTGCCTaGCAGAACgACCCGAGAACATGTTTCAA-CGCTGGGGGG-CGGAGGGTCTTGCGGCTCTGCGCCCCCTTATCcTAGgAGGCGAGTGTCTT-GCGTGTTGCACtTcGGTgCTTTCGCTTGACCGACCCTCCCAGGCGTAT---CGAACACCGGCGTGAATTGCGCCAAGGaACTtgTaTGAAAGA-GCGTTCCCCC-GcCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_majalis TCGAAACCTGCCTAGCAGAACGACCCGAGNACATGTTTCAA-CGCTTGGGGG-CGGAGGNTCTTGCGGCTCTGCGCCCCCTTATCCTAGGAGGCAAGTGTCTT-GCGCGTTGCATTTCGGTGCTTGCGCTTGACCGACCCTCCCGGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTTCCCCCGCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_laxa TCGAAACCTGCCTAGCAGAACGACCCGAGCACATGTTTCAA-CGCTTGGGGG-CGGAGGGTCTTGCGGCTCTGCGCCCCCTTATCCTAGGAGGCAAGTGTCTT-GCGTGTTGCATTTCGGTGCTTGCGCTTGACCGACCCTCCTGGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTTCCCCCGCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_laevigata TCGAAACCTGCCTAGCAGAACGACCCGAGAACATGTTTCAA-CGCTCGGGGG-CGTAGGGTCTTGCGGCTCTGTGCCCCCTCATCCTAGGAGGCAAGTVTCTT-GCGTGTTGCATTTCGGTGCTTTCGCTTGACCGACCCTCCTGGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTCCCCC-GCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_jundzillii_VW356_2 TCGAAACCTGNNTAGCAGAACGACCCGAGAACATGTTTCAA-CGCTGGGGGGGCGGAGGGTCTTGCGGCTCTGCGCCCCCTTATCCTAGGAGGCGAGTTTCTT-GCGTGTTGCACTTCGGTGCTTTCGCTTGACCGACCCTCCCAGGCGTAC---TGAGCACCGGCGTGAACTGCGCCAAGGAACTTGAATGAAAGA-GCGTTCCCCC-GCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_jundzillii_VW356_1 TCGAAACCTGNNTAGCAGAACGACCCGAGAACATGTTTCAA-CGCTTGGGGG-CGGAGGGTCTTGCGGCTCTGCGCCCCCTTATCCTAGGAGGCAAGTGTCTT-GCGTGTTGCATTTCGGTGCTTGTGCTTGACCGACCCTCCTAGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTCCCCC-GCCTTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_hugonis TCGAAACCTGCCTAGCAGAACGACCCGAGAACATGTTTCAA-CGCTTGGGGG-CGGAGGGTCTTGCGGCTCTGCGCCCCCTTATCCTAGGAGGCAAGTGTCTT-GCGTGTTGCATTTCGGTGCTTGCGCTTGACCGACCCTCCTGGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTTCCCCCGCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_helenae TCGAAACCTGCCTAGCAGAACGACCCGAGAACATGTTTCAA-CGCTTGGGGG-CGTAGGGTCTTGCGGCTCTGTGCMCCCTTATCCTAGGAGGCAAGTGTCTT-GCGTGTTGCATTTCGGTGTTTGCGCTTGATCGACCCTCCTAGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTCCCCCCGC-GTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_gallica TCGAAACCTGNTTAGCAGAACGACCCGAGAACATGTTTCAA-GGCTTGGGGG-CGGAGGGTCTTGCGGCTCTGCGCCCCCTTATCCTAGGAGGCAAGTGTCTT-GCGTGTTGCATTTCGGTGCTTGCGCTTGACCGACCCTCCCAGGCGTAC---CGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTCCCCC-GCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_foetida TCGAAACCTGCCTAGCAGAACGACCCGAGAACATGTTTCAA-CGCTTGGGGG-YGGAGGGTCTTGCGGCTCTGTTCCCCCTTATCCTAGGAGGCAAGTGTCTT-GCGTGTTGCATTTCGGTGCTTTCGCTTGACCGACCCTCCTGGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTCCCCC-GCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_ecae TCGAAACCTGCCTAGCAGAACGACCCGAGAACATGTTTCAA-CGCTTGGGGG-YGGAGGGTCTTGCGGCTCTGTKCCCCCTTATCCTAGGAGGCAAGTGTCTT-GCGTGTTGCATTTCGGTGCTTTCGCTTGACCGACCCTCCTGGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTCCCCC-GCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_dumalis TCGAAACCYGCNTAGCAGAACGACCCGAGAACATGTNTCAA-CGCTGGGGGGGCGGAGGGTCTTGCGGCTCTGCGCCCCCTTATCCTAGGAGGCGAGTTTTTG-GCGTKTGGCACTCCGGKGCTTTCGCYTRACCGACCCTCCCAGSSGTMC---TGAACACCGGCGTGAATGGCGCCAAGGAACTKGAATGAAAGA-SCGTCCCCCC-GCCGTCCCGGAGACG-CTGCTCGGTGCGGGGTGGTTTCGTCGTCTTCAATATGTC Rosa_columnifera TCGAAACCTGCCTAGCAGAACGACCCGAGAACATGTTTCAA-CGCTGGGgGG-CGGAGGGTCTTgCgGCTCTGCGCCCCCTTATCCTaGGAGGCGAGTGTCTT-GCGTGTTGCACTTCGGTgCTTTCGCTTGACCGACCCTCCCAGGCGTAC---TGAACACCGGCGTGAATTgCGCCAAGGAACTTGAATGAAAGA-GCGTTCCCCC-GCcGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_chinensis TCGAAACCTGCCTAGCAGAACGACCCGAGAACATGTTTCAA-CGCTTGGGGG-CGGAGGGTCTTGCGGCTCTGCGCCCCCTTATCCTAGGAGGCAAGTGTCTT-GCGTGTTGCATTTCGGTGCTTTCGCTTGATCGACCCTCCCAGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTCCCCC-GCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_carolina TCGAAACCTGCCTAGCAGAACGACCCGAGCACATGTTTCAA-CGCTTGGGGG-CGGAGGNTCTTGCGGCTCTGCGCCCCCTCATCCTAGGAGGCAAGTGTCTT-GCGCGTTGCATTTCGGTGCTTGCGCTTGACCGACCCTCCCGGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTTCACCCGCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTGTTCAATATGTC Rosa_canina TCGAAACCTGSNTAGCAGAACGACCCGAGAACATGTTTCAA-CGCTGGGGGG-CGGAGGGTCTTGCGGCTCTGCGCCCCCTTATCCTAGGAGGCGAGTTTCTT-GCGTGTTGCACTTCGGTGCTTTCGCTTGACCGACCCTCCCAGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTCCCCC-GCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_bracteata TCGAAACCTGCCTAGCAGAACGACCCGAGAACATGTTTCAA-CGCTTGGGGG-CGGAGGGTCTTGCGGCTCTGCGCCCCCTCATCCTAGGAGGCAAGTGTCTT-GCGCGTTGCATTTCGGTGCTTGCGCTTGACCGACCCTCCCGGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTTCMCC-GCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_blanda TCGAAACCTGCCTAGCAGAACGACCCGAGAACATGTTTCAA-CGCTTGGGGG-CGGAGG-TCTTGCGGCTCTGCGCCCCCTCATCCTAGGAGGCAAGTGTCTT-GCGCGTTGCATTTCGGTGCTTGCGCTTGACCGACCCTCCCGGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTTCCCCCGCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_beggeriana TCGAAACCTGCCTAGCAGAACGACCCGAG-ACATGTTTCAA-CGCTTGGGGG-CGGASSGTGTTGCGGCTCTGCGCCCCCTTATCCTAGGAGGCAAGTGTCTT-GCGCGTTGCATTTCGGTGCTTGCGCTTGACCGACCCTCCCGGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTTCCCCCGCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_banksiae TCGAAACCTGCCTAGCAGAACGACCCGAGAACATGTTTCAA-SGCTTGGGGG-CGGAGGGTCTTGCGGCTCTGCGCCCCCTTATCCTAGGAGGCAAGTGTCTT-GCGTGTTGCATTTCGGTGCTTGTGCTTGACCGACCCTCCTAGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTCCCCC-GCCTTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_arkansana_II TCGAAACCTGCCTAGCAGAACGACCCGAGAACATGTTTCAA-CGCTTGGGGG-CGGAGGGTCTTGCGGCTCTGCGCCCCCTCATCCTAGGAGGCAAGTGTCTT-GCGCGTTGCATTTCGGTGCTTGCGCTTGACCGACCCTCCCGGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTTCCCCCGCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_arkansana_I TCGAAACCTGCCTAGCAGAACGACCCGAGCACATGTTTCAA-CGCTTGGGGG-CGGAGGGTCTTGCGGCTCTGCGCCCCCTCATCCTAGGAGGCAAGTGTCTT-GCGCGTTGCATTTCGGTGCTTGCGCTTGACCGACCCTCCCGGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTTCCCCCGCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_altaica TCGAAACCTGCCTAGCAGAACGACCCGAGAACATGTTTCAA-CGCTTGGGGG-CGGAGGGTCTTGCGGCTCTGCGCCCCCTTATCCTAGGAGGCAAGTGTCTT-GCGTGTTGCATTTCGGTGCTTGCGCTTGATCGACCCTCCCAGGCGTAC---TGAACACCGGCGTGAATTGCGCCAAGGAACTTGAATGAAAGA-GCGTTCCCCC-GCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_abietina_C9_3 TCGAAACCtGCCTagCAGAACGACCCGAGaACATGTTTCAA-CGCTGGGGGGGCGGAGGgTCTTGCGGcTCTGCGCCCCCTTATCCTAGGAGGCgAGTNTCTT-GCGTGTTGCACTTCGGTgcTTTCGCTTGaCCGACCCTCCCAGGCGTAC---TGaaCACCGGCGTGGATTGCGCCAAGGaACTTGAATGAAAGA-GCgTTCCCCC-GcCgTCCCGGAGACG-GTGcTCG-TGcGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_abietina_C9_2 TCGAAACCTGCCTCGCAGAACGACCCGAGAACATGTTTCAA-CGCTGGGGGGGCGGAGGgTCTTGCGGCTCTGCGCCCCCTTATCCTAGGAGGCGAGTCTCTT-GCGTGTTGCACTTCGGtgCTTTCGCTTGACCGACCCTCCCAGGCGTAC---TGAACACCGGCGTgAATTGCGCCAAGGAACTTgAATGAAAGA-GCGTTCCCCC-GCCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC Rosa_abietina_C9_1 TCGAAACCTgCCTAGCAGAACGACCCGAGAACATGTTTCAA-CGCTGGGGGG-CGGAGGgTCTTGCGGCTCTGCGCCCCCTTATCCTaGGAGGCGAGTNTCTT-GCGTGTTGCACTTCGGTGcTTTCGCTTGACCGACCCTCCCAGGCGTAC---TGAACACCGGCGTGAATTGCGCCAaGGAaCTtgaATGAAAGA-GCGTTCCCCC-GcCGTCCCGGAGACG-GTGCTCG-TGCGGG-TGGTTTCGTCGTCTTCAATATGTC ; END; BEGIN CODONS; CODONPOSSET * CodonPositions = N: 1 - 264 ; CODESET * UNTITLED = Universal: all ; END; BEGIN ASSUMPTIONS; OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; END;