#NEXUS [written Tue Jul 10 10:20:11 EDT 2012 by Mesquite version 2.75 (build 564) at Robert-Baratheons-MacBook.local/10.0.1.136] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=32; TAXLABELS Dromaeosauridae Anas_platyrhynchos Chauna_torquata Gallus_gallus Crax_pauxi Crypturellus_undulatus Lithornis Iaceornis_marshii Ichthyornis Hesperornis_regalis Baptornis_adventus Songlingornis_linghensis Patagopteryx_deferrariisi Cathayornis_yandica Concornis_lacustris Neuquenornis_volans Gobipteryx_minuta Vorona_berivotrensis Apsaravis_ukhaana Confuciusornis_sanctus Archaeopteryx_lithographica Yixianornis_grabaui Yanornis_martini Sapeornis Pengornis Protopteryx Hongshanornis Archaeorynchus Jeholornis Jianchangornis Zhongjianornis Schizooura ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=205; FORMAT DATATYPE = STANDARD GAP = - MISSING = ? SYMBOLS = " 0 1 2 3 4 5 6"; MATRIX Dromaeosauridae 0000000?000000000000000000?00000?000?00??0000???00000000000000000000?100?00000000?0000?00000?0000000000000000?0010000?00000000100001000000??0000000?0000000001000?00000?000?0000000000000000000000000?00???00 Anas_platyrhynchos 21111?10211211111110112211021112111111101100011110112121010106211011121311113120110??1011010?1?1111111000011100110001211100001011101111111123114011010121021?0111111101111110111011210211002113112?2221000102 Chauna_torquata 11111?10211211?111101022110111121111111011000111101121210121062110111113111140101?01110110111111011111010211100110001211100001011101101111123114011011121021?011111111111111211102121021200211311222222100100 Gallus_gallus 11111?102112112111101122110111111111111011000110101121210101162100111?13111121101200?12110111111111111100111110110001211100001011101101111113114011001221021?011111111111111211102121021100211311232222100111 Crax_pauxi 21111?102112112111101122110111111111111011000110101121210101162110111213111121101200012110111111111111100111110110001211100001011101101111113114011011221021?011111111111111211102121021100211311232222100110 Crypturellus_undulatus 21111?11211211?01010001111101011001101111111110010102121010116210111221311112?1010000121101101011111111001111101100012111000011101011011111031140110111210201011110110111111211102121021100211311222221?00101 Lithornis 21111?1121121100?0100011111010110?11?1101?1111?01?102121012?0?11?1?1??13111221001000?10110110111101111001111100110001?1110000101010110111111311301110?12102000?111011011111121110212101100021131122222110010? Iaceornis_marshii ???????????????????????????????????????????????????????????????????????31?02?11????1?1011010?111101111?01????????????????????????????????1113114011110121020001110??1?11?11121110212?121100211??????????????? Ichthyornis ?110010?11????????0??????10?1?111011101001020???101??1200111??110021??1311022010100001011010?11110111111011110010110110010000101?10111211112311201110012?12000111?00101?11?12111021211111002113112?2?21000002 Hesperornis_regalis 1110010?1111112001?1?0?1010??1110011100??00?0???101021210110050100112111?00010010?0001??0?10?0???000010??0?????????0???0????0?????????????????????????????201?11110000111111211102121111100211311212221022002 Baptornis_adventus ?11???????????????????????????11001??00??1??????????212101100401001121????012?0??????1010?10?0???000?????0?????????0???0??????????01???1??????????????????201?11110000111111211102121111100211211?1?221?020?2 Songlingornis_linghensis ?010010?01????????????????????????????????1??????0?????????????????????31????0201?00110110???1?11011????????????????????????????????????????????????????????????????????????????????????????????????????????? Patagopteryx_deferrariisi ???????????????????0?0?1??????00??111110000?????????20100000030????????????0?????????10010????0101?11110?00?????10?0??001000001?0001???00???3?0????????10?20?0110000?011011?2?0????20?0?000?11310?110000000?? Cathayornis_yandica ?000010?00????????????????????????????????0??????0?????0111??201?0?10??30??1??101310011011????010?0110000100101100?010001111100??1??1???2101210?1?1?01?110101201??000000000?11???11?0?0?0?1?1???00?????0????? Concornis_lacustris ???????????????????????????????????????????????????????0111????????10??30??1?0101210011011?0?0010001?0???1001?1100?0100?1???10???1?1???????????????????11?????0?????????00?1???????20?0?00??111?00??1???11??0 Neuquenornis_volans ???????????????????????????????????????????????????????0110????????????31?????101?1001?01100?001?001?0???2??1???0??0???0?????????1?11???2???210?1???01??????????????????????110?1?1?0???????1???0???1?0111??? Gobipteryx_minuta 11111?10010000?001?1?0?10?????00?????0???0??0???1??????????????????10???????????131??1101100?0?1000110?002001?1?0110???0????????????11?121????0??????1?1??1???????????0?001???0????1?10?00111111000?11?111?0? Vorona_berivotrensis ???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????1???????10101011111200001?20000000 Apsaravis_ukhaana ????1?10?????????????????????????0?1??????1?0???????2?20010??4010011???31??1?????????1001000?0?10001111011111?01011010001111100001011021110??11201100?12??2010111?0010111111?1110??2?101211211311111?201000?1 Confuciusornis_sanctus 11111??0010010???????????10??00??011200??01?0111110010000110010100010?020001200001?000?01000?0??0??0000000000?000211??0010000000010100210101110?100?000100101201000000000001110101120001000111100001110111?00 Archaeopteryx_lithographica 0000010?000000000??000110??00?0??000?00???000???00100000000000000000?00????????0000000?00000?0000000000000000?0010000?000??000?00001000000??0000000?00000000010000000?00000?000000000?00?0??1010000000?1????? Yixianornis_grabaui 101?010001???????????01??1????????11??????1?0?????100?2001100301???111031?????20100011011010?111101111100111100?0110??001?000???0?011021?10?3112001100?200?00001100000?0001?21?101?2???????1113111??1???00??1 Yanornis_martini 1010010001?01????????????10???????1???????1?0?????100020011?0301??0???0310????20100001011010?1?11?1111000111??0101?0100?10000?0?????1021?1013111001100?200?0??01?000?0?0001??1?????2??0??00?11?11???12??00??1 Sapeornis 1000010000000?????????????????????????????1?0?????0000?00010010000010?0????????0020000?0000??0?00000000001000?0?01?10?0010000?1???0?00?1?10?1111001100?10?00??00?00?0000000???000?010?0??00??0000000?0??11??0 Pengornis 0000010?00000???????????????????????????????0?????0????0011???0??0010?0????????012?001?010??????0??1???012111?0?011010001??1?????1??11???10???0??01??1?11?????0??0??????000??10?????0?0??0??1?1?00??11??11??0 Protopteryx ?00?010?00000????????????10?????????????????0?????0????001100?01?0?10?030??1?0101210011?10?0??010??1110001000?0?0000??001??0????????100?010?110000??00?100?0??0??0000??000??11??????0???????????000?1???11??0 Hongshanornis 11110?0?010?1????????????10???????????????1?0?????1?0??001100?01?0?111031???2?20120001011000??0100011110111110010100100010000?0???011001?1??3112001?00?200?0??0??0?00?000011?1?101??1001000?1131111112?000?01 Archaeorynchus 1?????000?000?????????????????????????????0?0???01?0?1?00010??0???????031??1?0?01000010?1????0010??111000211??0?01?0??0?10000?????0?10???10??10?00??0??100?0100??0000??0001?21???1????0??00?1?1?00?01???00??0 Jeholornis ??????????????????????????????????????????????????0???????????????????0??????????????10?10?0?0?0?0?11000?100??0000?00?0???000?1???0???0??1??1001?010000100?0020?00?00??0000????00?000?0??00??00000?0????00??? Jianchangornis 00??01???0????????????????????????????00?00??????0?02020?110030????1??031?01??101000110110010101100?110??2110?0?0100???01??00??00000??0??1113110000?000110???????0?1????001???0????2?10?100?11210100?0??00?00 Zhongjianornis 01111?0?1012???????00?????????????????????11???????0?0?0?1100???001????0??????00??00?01010?0?0?10??110000200????01000?1?1??01???00001100?1011010000?10000000021?00?0??0000?001??11020?0000?01111000010?011?02 Schizooura 01111????1?0?????01??????1???????????0????1??????01?2??0?1??0?0?00?122030??1???012??01??10???0??01??110101?????1?1?0100?0010?1????????0??10?300010??000100000?????1???11??1???1????2?10?111?01?11??0111000??1 ; END; BEGIN ASSUMPTIONS; OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS; TYPESET * UNTITLED = unord: 2 - 8 10 - 11 13 - 23 25 - 31 33 - 52 54 56 - 61 64 - 66 68 - 71\3 73 - 76 78 80 - 81 83 - 105 107 - 113 115 - 118 120 - 140 142 - 143 145 - 150 153 - 154 156 - 157 159 - 160 162 - 172 174 - 177 179 181 - 182 184 186 - 187 189 - 190 192 - 193 200 - 204, ord: 1 9 - 12\3 24 32 53 55 62 - 63 67 69 - 70 72 77 79 - 82\3 106 114 119 141 - 144\3 151 - 152 155 - 161\3 173 178 180 - 183\3 185 - 194\3 195 - 199 205; END; BEGIN TREES; Title Imported_trees; LINK Taxa = Taxa; TRANSLATE 1 Dromaeosauridae, 2 Anas_platyrhynchos, 3 Chauna_torquata, 4 Gallus_gallus, 5 Crax_pauxi, 6 Crypturellus_undulatus, 7 Lithornis, 8 Iaceornis_marshii, 9 Ichthyornis, 10 Hesperornis_regalis, 11 Baptornis_adventus, 12 Songlingornis_linghensis, 13 Patagopteryx_deferrariisi, 14 Cathayornis_yandica, 15 Concornis_lacustris, 16 Neuquenornis_volans, 17 Gobipteryx_minuta, 18 Vorona_berivotrensis, 19 Apsaravis_ukhaana, 20 Confuciusornis_sanctus, 21 Archaeopteryx_lithographica, 22 Yixianornis_grabaui, 23 Yanornis_martini, 24 Sapeornis, 25 Pengornis, 26 Protopteryx, 27 Hongshanornis, 28 Archaeorynchus, 29 Jeholornis, 30 Jianchangornis, 31 Zhongjianornis, 32 Schizooura; TREE Imported_tree_0 = (1,(21,(24,(29,(31,(20,((13,18,((32,(27,((19,((9,(8,(((2,3),(4,5)),(6,7)))),(10,11))),(23,(12,22))))),(28,30))),(26,(25,(14,15,(16,17))))))))))); END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Mk1 (est.)': 1 - 205; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1341930011519; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 451717663904301735; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 4880512678183830594; mqVersion 275; checksumv 0 3 125186180 null getNumChars 205 numChars 205 getNumTaxa 32 numTaxa 32 short true bits 127 states 127 sumSquaresStatesOnly 40646.0 sumSquares 40646.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1 errorReportedDuringRun; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState true false 148; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 700 467; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; desuppress; endTell; endTell; end;