#NEXUS [written Tue Aug 07 11:28:15 BST 2012 by Mesquite version 2.74 (build 550) at CREMSERVER/10.140.73.220] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=31; TAXLABELS Neoscytalidium_novaehollandiae_WAC1330 Neoscytalidium_novaehollandiae_WAC13275 Neoscytalidium_dimidiatum_WAC13284 CMM3979 Neoscytalidium_dimidiatum_PD103 CMM3980 CMM3928 CMM3925 CMM3923 CMM3905 CMM3937 CMM3940 CMM3938 CMM3899 Botryosphaeria_dothidea_CAP288 Botryosphaeria_dothidea_CMW8000 Botryosphaeria_corticis_CBS119047 Botryosphaeria_corticis_ATCC_22927 Botryosphaeria_fabicerciana_CMW24703 Botryosphaeria_fabicerciana_CMW27094 Botryosphaeria_scharifii_CBS124703 Botryosphaeria_scharifii_CBS124702 Botryosphaeria_ramosum_CBS122069 Botryosphaeria__mamane_CMW13433 Botryosphaeria__mamane_CMW13429 CMM3941 CMM1390 Botryosphaeria_atrovirens_CMW22674 Botryosphaeria_atrovirens_CMW22682 Pseudofusicoccum_stromaticum_CMW13434 Pseudofusicoccum_stromaticum_CMW13435 ; END; BEGIN CHARACTERS; TITLE Botryosphaeria_Character_Matrix; DIMENSIONS NCHAR=1180; FORMAT DATATYPE = DNA INTERLEAVE GAP = - MISSING = ?; MATRIX Neoscytalidium_novaehollandiae_WAC1330 -----------------GGAAGGATCATTACCGAGTTGATTCGG--GCTC Neoscytalidium_novaehollandiae_WAC13275 -----------------GGAAGGATCATTACCGAGTTGATTCGG--GCTC Neoscytalidium_dimidiatum_WAC13284 -----------------GGAAGGATCATTACCGAGTTGATTCGG--GCTC CMM3979 -CCGTAGGTGAACCTGCGGAAGGATCATTACCGAGTTGATTCGG--GCTC Neoscytalidium_dimidiatum_PD103 -------------------------CATTACCGAGTTGATTCGG--GCTC CMM3980 -------------CTGCGGAAGGATCATTACCGAGTTGATTCGG--GCTC CMM3928 -------------------------CATTACCGAGTTGATTCGG--GCTC CMM3925 -------------------------CATTACCGAGTTGATTCGG--GCTC CMM3923 -------------------------CATTACCGAGTTGATTCGG--GCTC CMM3905 -------------------------CATTACCGAGTTGATTCGG--GCTC CMM3937 -------------------------CATTACCGAGTTGATTCGG--GCTC CMM3940 -------------------------CATTACCGAGTTGATTCGG--GCTC CMM3938 -------------------------CATTACCGAGTTGATTCGG--GCTC CMM3899 -------------------------CATTACCGAGTTGATTCGG--GCTC Botryosphaeria_dothidea_CAP288 TCCGTAGGTGAACCTGCGGAAGGATCATTACCGAGTTGATTCGG--GCTC Botryosphaeria_dothidea_CMW8000 -----------------GGAAGGATCATTACCGAGTTGATTCGG--GCTC Botryosphaeria_corticis_CBS119047 TCCGTAGGTGAACCTGCGGAAGGATCATTACCGAGTTGATTCGG--GCTC Botryosphaeria_corticis_ATCC_22927 TCCGTAGGTGAACCTGCGGAAGGATCATTACCGAGTTGATTCGG--GCTC Botryosphaeria_fabicerciana_CMW24703 ------------CCTGCGGAAGGATCATTACCGAGTTGATTCGG--GCTC Botryosphaeria_fabicerciana_CMW27094 ------------CCTGCGGAAGGATCATTACCGAGTTGATTCGG--GCTC Botryosphaeria_scharifii_CBS124703 -------------------AAGGATCATTACCGAGTTGATTCGG--GCTC Botryosphaeria_scharifii_CBS124702 -------------------AAGGATCATTACCGAGTTGATTCGG--GCTC Botryosphaeria_ramosum_CBS122069 -----------------GGAAGGATCATTACCGAGTTGATTCGG--GCTC Botryosphaeria__mamane_CMW13433 ---------------------------TT-CCGAGGTTGATTCGG--CTC Botryosphaeria__mamane_CMW13429 --------------------------ATT-CCGAGTTGATTGGG---CTC CMM3941 -------------------------CATT-CCGAGTTGATTCGG---CTC CMM1390 -------------------------CATT-CCGAGTTGATTCGG---CTC Botryosphaeria_atrovirens_CMW22674 ---------------GCTTAAC-GATATGCTTAAGTTCAGCGGGGTATCC Botryosphaeria_atrovirens_CMW22682 -----------TTCCGCTTAATTGATATGCTTAAGTTCAGCGGG-TATCC Pseudofusicoccum_stromaticum_CMW13434 -----------------GGAAGGATCATTACCGAGTT--TTGGG--TCTC Pseudofusicoccum_stromaticum_CMW13435 -----------------GGAAGGATCATTACCGAGTT--TTGGG--TCTC Neoscytalidium_novaehollandiae_WAC1330 CGGCCCGATCCT-----CCCACCCTTTGTGTACCCAC-------CTCTGT Neoscytalidium_novaehollandiae_WAC13275 CGGCCCGATCCT-----CCCACCCTTTGTGTACCCAC-------CTCTGT Neoscytalidium_dimidiatum_WAC13284 CGGCCCGATCCT-----CCCACCCTTTGTGTACCCAC-------CTCTGT CMM3979 CGGCCCGATCCT-----CCCACCCTTTGTGTACCCAC-------CTCTGT Neoscytalidium_dimidiatum_PD103 CGGCCCGATCCT-----CCCACCCTTTGTGTACCCAC-------CTCTGT CMM3980 CGGCCCGATCCT-----CCCACCCTTTGTGTACCCAC-------CTCTGT CMM3928 CGGCCCGATCCT-----CCCACCCTTTGTGTACCTAC-------CTCTGT CMM3925 CGGCCCGATCCT-----CCCACCCTTTGTGTACCTAC-------CTCTGT CMM3923 CGGCCCGATCCT-----CCCACCCTTTGTGTACCTAC-------CTCTGT CMM3905 CGGCCCGATCCT-----CCCACCCTTTGTGTACCTAC-------CTCTGT CMM3937 CGGCCCGATCCT-----CCCACCCTTTGTGTACCTAC-------CTCTGT CMM3940 CGGCCCGATCCT-----CCCACCCTTTGTGTACCTAC-------CTCTGT CMM3938 CGGCCCGATCCT-----CCCACCCTTTGTGTACCTAC-------CTCTGT CMM3899 CGGCCCGATCCT-----CCCACCCTTTGTGTACCTAC-------CTCTGT Botryosphaeria_dothidea_CAP288 CGGCCCGATCCT-----CCCACCCTTTGTGTACCTAC-------CTCTGT Botryosphaeria_dothidea_CMW8000 CGGCCCGATCCT-----CCCACCCTTTGTGTACCTAC-------CTCTGT Botryosphaeria_corticis_CBS119047 CGGCCCGATCCTT----CCCACCCTTTGTGTACCTAC-------CTCTGT Botryosphaeria_corticis_ATCC_22927 CGGCCCGATCCTT----CCCACCCTTTGTGTACCTAC-------CTCTGT Botryosphaeria_fabicerciana_CMW24703 CGGCCCGATCCT-----CCCACCCTTTGTGTACCTAC-------CTCTGT Botryosphaeria_fabicerciana_CMW27094 CGGCCCGATCCT-----CCCACCCTTTGTGTACCTAC-------CTCTGT Botryosphaeria_scharifii_CBS124703 CGGCCCGATCCT-----CCCACCCTTTGTGTACCTAC-------CTCTGT Botryosphaeria_scharifii_CBS124702 CGGCCCGATCCT-----CCCACCCTTTGTGTACCTAC-------CTCTGT Botryosphaeria_ramosum_CBS122069 CGGCCCGATCCT-----CCCACCCTTTGTGTACCACC-------CTCTGT Botryosphaeria__mamane_CMW13433 CGGCCC?ATCCT-----CCCACCCTTTGTGTACCTAC-------CTCTGT Botryosphaeria__mamane_CMW13429 CGGCCC?ATCCT-----CCCACCCTTTGTGTACCTAC-------CTCTGT CMM3941 CGGCCCGATCCT-----CCCACCCTTTGTGTACCTAC-------CTCTGT CMM1390 CGGCCCGATCCT-----CCCACCCTTTGTGTACCTAC-------CTCTGT Botryosphaeria_atrovirens_CMW22674 CTACCTGATCGGAG---GTCACCCTCGAGACAAGTTCAGACGGTCTCTGC Botryosphaeria_atrovirens_CMW22682 CTACCTGATCCGAG---GTCAACCTTGAGAAAAGTTCAGAAGGTCTCTCC Pseudofusicoccum_stromaticum_CMW13434 CTCATCGAGCCCACTCTCCAACCCTTTGTGTACCTAC-------CTCTGT Pseudofusicoccum_stromaticum_CMW13435 CTCATCGAGCCCACTCTCCAACCCTTTGTGTACCTAC-------CTCTGT Neoscytalidium_novaehollandiae_WAC1330 TGCTTTGGCGGGCCGCGGTCCTCCGCGGCCGCCCTCC--GTCCGGGGGGT Neoscytalidium_novaehollandiae_WAC13275 TGCTTTGGCGGGCCGCGGTCCTCCGCGGCCGCCCTCC--GTCCGGGGGGT Neoscytalidium_dimidiatum_WAC13284 TGCTTTGGCGGGCCGCGGTCCTCCGCGGCCGCCCTCC--GTCCGGGGGGT CMM3979 TGCTTTGGCGGGCCGCGGTCCTCCGCGGCCGCCCTCC--GTCCGGGGGGT Neoscytalidium_dimidiatum_PD103 TGCTTTGGCGGGCCGCGGTCCTCCGCGGCCGCCCTCC--GTCCGGGGGGT CMM3980 TGCTTTGGCGGGCCGCGGTCCTCCGCGGCCGCCCTCC--GTCCGGGGGGT CMM3928 TGCTTTGGCGGGCCGCGGTTCTCCGCGGCCGCCCCCC-TCCCCGGGGGGT CMM3925 TGCTTTGGCGGGCCGCGGTTCTCCGCGGCCGCCCCCC-TCCCCGGGGGGT CMM3923 TGCTTTGGCGGGCCGCGGTTCTCCGCGGCCGCCCCCC-TCCCCGGGGGGT CMM3905 TGCTTTGGCGGGCCGCGGTTCTCCGCGGCCGCCCCCC-TCCCCGGGGGGT CMM3937 TGCTTTGGCGGGCCGCGGTCCTCCGCGGCCGCCCCCC-TCCCCGGGGGGT CMM3940 TGCTTTGGCGGGCCGCGGTCCTCCGCGGCCGCCCCCC-TCCCCGGGGGGT CMM3938 TGCTTTGGCGGGCCGCGGTCCTCCGCGGCCGCCCCCC-TCCCCGGGGGGT CMM3899 TGCTTTGGCGGGCCGCGGTTCTCCGCGGCCGCCCCCC-TCCCCGGGGGGT Botryosphaeria_dothidea_CAP288 TGCTTTGGCGGGCCGCGGTCCTCCGCGGCCGGCCCCCCTCCCCGGGGGGT Botryosphaeria_dothidea_CMW8000 TGCTTTGGCGGGCCGCGGTCCTCCGCGGCCGGCCCCCCTCCCCGGGGGGT Botryosphaeria_corticis_CBS119047 TGCTTTGGTGGGCCGCGGTTCTCCGCGGCCGCCCCCCCTCTCCGGGGGGT Botryosphaeria_corticis_ATCC_22927 TGCTTTGGTGGGCCGCGGTTCTCCGCGGCCGCCCCCCCTCTCCGGGGGGT Botryosphaeria_fabicerciana_CMW24703 TGCTTTGGCGGGCCGCGGTTCTCCGCGGCCGCCCCCC-TCCCCGGGGGGT Botryosphaeria_fabicerciana_CMW27094 TGCTTTGGCGGGCCGCGGTTCTCCGCGGCCGCCCCCC-TCCCCGGGGGGT Botryosphaeria_scharifii_CBS124703 TGCTTTGGCGGGCCGCGGTCCTCCGCGGCTGCCCCC--TCCCCGGGGGGT Botryosphaeria_scharifii_CBS124702 TGCTTTGGCGGGCCGCGGTCCTCCGCGGCTGCCCCC--TCCCCGGGGGGT Botryosphaeria_ramosum_CBS122069 TGCTTTGGCGGGCCGCGGTCCTCCGCGGCCGCCCCC--TCCCCGGGGG-T Botryosphaeria__mamane_CMW13433 TGCTTTGGCGGGCCGCGGTCCCCCGCGGCCGCCCCCCCTCCCCGGGGGGT Botryosphaeria__mamane_CMW13429 TGCTTTGGCGGGCCGCGGTCCCCCGCGGCCGCCCCCCCTCCCCGGGGGGT CMM3941 TGCTTTGGCGGGCCGCGGTCCCCCGCGGCCGCCCCCCCTCCCCGGGGGGT CMM1390 TGCTTTGGCGGGCCGCGGTCCCCCGCGGCCGCCCCCCCTCCCCGGGGGGT Botryosphaeria_atrovirens_CMW22674 GGCTGTGGCGGGCCGCGGTCCCCCGCGGCCGCCCCCCCTCCCCGGGGGGT Botryosphaeria_atrovirens_CMW22682 GGCGG-GGCGGGCCGCGGTCCCCCGCGGCCGCCCCCCCTCCCCGGGGGGT Pseudofusicoccum_stromaticum_CMW13434 TGCTTTGGCGGGCCGCGGTTCTCCGCGGCCGGCCCCT--TGACCGGGGCT Pseudofusicoccum_stromaticum_CMW13435 TGCTTTGGCGGGCCGCGGTTCTCCGCGGCCGGCCCCT--TGACCGGGGCT Neoscytalidium_novaehollandiae_WAC1330 GGCCAGCGCCCGCCAGAGGACCATCAAACTCCGGTCAGTGAACGTTGCCG Neoscytalidium_novaehollandiae_WAC13275 GGCCAGCGCCCGCCAGAGGACCATCAAACTCCGGTCAGTGAACGTTGCCG Neoscytalidium_dimidiatum_WAC13284 GGCCAGCGCCCGCCAGAGGACCATCGAACTCCGGTCAGTGAACGTTGCCG CMM3979 GGCCAGCGCCCGCCAGAGGACCATCGAACTCCGGTCAGTGAACGTTGCCG Neoscytalidium_dimidiatum_PD103 GGCCAGCGCCCGCCAGAGGACCATCAAACTCCGGTCAGTGAACGTTGCCG CMM3980 GGCCAGCGCCCGCCAGAGGACCATCGAACTCCGGTCAGTGAACGTTGCCG CMM3928 GGCCAGCGCCCGCCAGAGGACCATCAAACTCCAGTCAGTAAACGATGCAG CMM3925 GGCCAGCGCCCGCCAGAGGACCATCAAACTCCAGTCAGTAAACGATGCAG CMM3923 GGCCAGCGCCCGCCAGAGGACCATCAAACTCCAGTCAGTAAACGATGCAG CMM3905 GGCCAGCGCCCGCCAGAGGACCATCAAACTCCAGTCAGTAAACGATGCAG CMM3937 GGCCAGCGCCCGCCAGAGGACCATCAAACTCCAGTCAGTAAACGATGCAG CMM3940 GGCCAGCGCCCGCCAGAGGACCATCAAACTCCAGTCAGTAAACGATGCAG CMM3938 GGCCAGCGCCCGCCAGAGGACCATCAAACTCCAGTCAGTAAACGATGCAG CMM3899 GGCCAGCGCCCGCCAGAGGACCATCAAACTCCAGTCAGTAAACGATGCAG Botryosphaeria_dothidea_CAP288 GGCCAGCGCCCGCCAGAGGACCATCAAACTCCAGTCAGTAAACGATGCAG Botryosphaeria_dothidea_CMW8000 GGCCAGCGCCCGCCAGAGGACCATCAAACTCCAGTCAGTAAACGATGCAG Botryosphaeria_corticis_CBS119047 GGCCAGCGCCCGCCAGAGGACCATCAAACTCTAGTCAGTAAACGACGCAG Botryosphaeria_corticis_ATCC_22927 GGCCAGCGCCCGCCAGAGGACCATCAAACTCTAGTCAGTAAACGACGCAG Botryosphaeria_fabicerciana_CMW24703 GGCCAGCGCCCGCCAGAGGACCATCAAACTCCAGTCAGTAAACGATGCAG Botryosphaeria_fabicerciana_CMW27094 GGCCAGCGCCCGCCAGAGGACCATCAAACTCCAGTCAGTAAACGATGCAG Botryosphaeria_scharifii_CBS124703 GGCCAGCGCCCGCCAGAGGACCATCAAACTCCAGTCAGTAAACGATGCAG Botryosphaeria_scharifii_CBS124702 GGCCAGCGCCCGCCAGAGGACCATCAAACTCCAGTCAGTAAACGATGCAG Botryosphaeria_ramosum_CBS122069 GGCCAGCGCCCGCCAGAGGACCATCAAACTCCAGTCAGTAAACGATGCAG Botryosphaeria__mamane_CMW13433 GGCTAGTGCCCGCCAGAGGACCATCAAACTCCAGTCAGTGAACGTCGCAG Botryosphaeria__mamane_CMW13429 GGCTAGTGCCCGCCAGAGGACCATCAAACTCCAGTCAGTGAACGTCGCAG CMM3941 GGCTAGTGCCCGCCAGAGGACCATCAAACTCCAGTCAGTGAACGTCGCAG CMM1390 GGCTAGTGCCCGCCAGAGGACCATCAAACTCCAGTCAGTGAACGTCGCAG Botryosphaeria_atrovirens_CMW22674 GGCTAGTGCCCGCCAGAGGACCATCAAACTCCAGTCAGTGAACGTCGCAG Botryosphaeria_atrovirens_CMW22682 GGCTAGTGCCCGCCAGAGGACCATCAAACTCCAGTCAGTGAACGTCGCAG Pseudofusicoccum_stromaticum_CMW13434 GGCCTGCGCCCGCCAGAGGACCACAAAACTCCAGTCAGTGAACTTTGCTG Pseudofusicoccum_stromaticum_CMW13435 GGCCTGCGCCCGCCAGAGGACCACAAAACTCCAGTCAGTGAACTTTGCTG Neoscytalidium_novaehollandiae_WAC1330 TCTGAAAAA-CAATCAATAAACTAAAACTTTCAACAACGGATCTCTTGGT Neoscytalidium_novaehollandiae_WAC13275 TCTGAAAAA-CAATCAATAAACTAAAACTTTCAACAACGGATCTCTTGGT Neoscytalidium_dimidiatum_WAC13284 TCTGAAAAA-CAATCAATAAACTAAAACTTTCAACAACGGATCTCTTGGT CMM3979 TCTGAAAAA-CAATCAATAAACTAAAACTTTCAACAACGGATCTCTTGGT Neoscytalidium_dimidiatum_PD103 TCTGAAAAA-CAATCAATAAACTAAAACTTTCAACAACGGATCTCTTGGT CMM3980 TCTGAAAAA-CAATCAATAAACTAAAACTTTCAACAACGGATCTCTTGGT CMM3928 TCTGAAAAA-CATTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGT CMM3925 TCTGAAAAA-CATTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGT CMM3923 TCTGAAAAA-CATTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGT CMM3905 TCTGAAAAA-CATTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGT CMM3937 TCTGAAAAA-CATTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGT CMM3940 TCTGAAAAA-CATTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGT CMM3938 TCTGAAAAA-CATTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGT CMM3899 TCTGAAAAA-CATTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGT Botryosphaeria_dothidea_CAP288 TCTGAAAAA-CATTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGT Botryosphaeria_dothidea_CMW8000 TCTGAAAAA-CATTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGT Botryosphaeria_corticis_CBS119047 TCTGAAAAAACATTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGT Botryosphaeria_corticis_ATCC_22927 TCTGAAAAAACATTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGT Botryosphaeria_fabicerciana_CMW24703 TCTGAAAAA-CATTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGT Botryosphaeria_fabicerciana_CMW27094 TCTGAAAAA-CATTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGT Botryosphaeria_scharifii_CBS124703 TCTGAAAAA-CATTCAATAAACTAAAACTTTCAACAACGGATCTCTTGGT Botryosphaeria_scharifii_CBS124702 TCTGAAAAA-CATTCAATAAACTAAAACTTTCAACAACGGATCTCTTGGT Botryosphaeria_ramosum_CBS122069 TCTGAAAAA-TATTCAATAAACTAAAACTTTCAACAACGGATCTCTTGGT Botryosphaeria__mamane_CMW13433 TCTGAAAAAACATTCAATAAACTAAAACTTTCAACAACGGATCTCTTGGT Botryosphaeria__mamane_CMW13429 TCTGAAAAAACATTCAATAAACTAAAACTTTCAACAACGGATCTCTTGGT CMM3941 TCTGAAAAAACATTCAATAAACTAAAACTTTCAACAACGGATCTCTTGGT CMM1390 TCTGAAAAAACATTCAATAAACTAAAACTTTCAACAACGGATCTCTTGGT Botryosphaeria_atrovirens_CMW22674 TCTGAAAAAACATTCAATAAACTAAAACTTTCAACAACGGATCTCTTGGT Botryosphaeria_atrovirens_CMW22682 TCTGAAAAAACATTCAATAAACTAAAACTTTCAACAACGGATCTCTTGGT Pseudofusicoccum_stromaticum_CMW13434 TCTGATTTA-AATTCAATAAACTAAAACTTTCAACAACGGATCTCTTGGT Pseudofusicoccum_stromaticum_CMW13435 TCTGATTTA-AATTCAATAAACTAAAACTTTCAACAACGGATCTCTTGGT Neoscytalidium_novaehollandiae_WAC1330 TCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGC Neoscytalidium_novaehollandiae_WAC13275 TCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGC Neoscytalidium_dimidiatum_WAC13284 TCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGC CMM3979 TCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGC Neoscytalidium_dimidiatum_PD103 TCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGC CMM3980 TCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGC CMM3928 TCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGC CMM3925 TCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGC CMM3923 TCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGC CMM3905 TCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGC CMM3937 TCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGC CMM3940 TCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGC CMM3938 TCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGC CMM3899 TCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGC Botryosphaeria_dothidea_CAP288 TCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGC Botryosphaeria_dothidea_CMW8000 TCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGC Botryosphaeria_corticis_CBS119047 TCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGC Botryosphaeria_corticis_ATCC_22927 TCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGC Botryosphaeria_fabicerciana_CMW24703 TCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGC Botryosphaeria_fabicerciana_CMW27094 TCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGC Botryosphaeria_scharifii_CBS124703 TCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGC Botryosphaeria_scharifii_CBS124702 TCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGC Botryosphaeria_ramosum_CBS122069 TCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGC Botryosphaeria__mamane_CMW13433 TCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGC Botryosphaeria__mamane_CMW13429 TCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGC CMM3941 TCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGC CMM1390 TCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGC Botryosphaeria_atrovirens_CMW22674 TCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGC Botryosphaeria_atrovirens_CMW22682 TCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGC Pseudofusicoccum_stromaticum_CMW13434 TCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGC Pseudofusicoccum_stromaticum_CMW13435 TCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGC Neoscytalidium_novaehollandiae_WAC1330 AGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTA Neoscytalidium_novaehollandiae_WAC13275 AGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTA Neoscytalidium_dimidiatum_WAC13284 AGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTA CMM3979 AGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTA Neoscytalidium_dimidiatum_PD103 AGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTA CMM3980 AGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTA CMM3928 AGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTA CMM3925 AGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTA CMM3923 AGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTA CMM3905 AGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTA CMM3937 AGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTA CMM3940 AGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTA CMM3938 AGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTA CMM3899 AGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTA Botryosphaeria_dothidea_CAP288 AGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTA Botryosphaeria_dothidea_CMW8000 AGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTA Botryosphaeria_corticis_CBS119047 AGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTA Botryosphaeria_corticis_ATCC_22927 AGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTA Botryosphaeria_fabicerciana_CMW24703 AGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTA Botryosphaeria_fabicerciana_CMW27094 AGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTA Botryosphaeria_scharifii_CBS124703 AGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTA Botryosphaeria_scharifii_CBS124702 AGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTA Botryosphaeria_ramosum_CBS122069 AGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTA Botryosphaeria__mamane_CMW13433 AGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTA Botryosphaeria__mamane_CMW13429 AGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTA CMM3941 AGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTA CMM1390 AGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTA Botryosphaeria_atrovirens_CMW22674 AGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTA Botryosphaeria_atrovirens_CMW22682 AGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTA Pseudofusicoccum_stromaticum_CMW13434 AGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTA Pseudofusicoccum_stromaticum_CMW13435 AGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTA Neoscytalidium_novaehollandiae_WAC1330 TTCCGAGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCT Neoscytalidium_novaehollandiae_WAC13275 TTCCGAGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCT Neoscytalidium_dimidiatum_WAC13284 TTCCGAGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCT CMM3979 TTCCGAGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCT Neoscytalidium_dimidiatum_PD103 TTCCGAGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCT CMM3980 TTCCGAGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCT CMM3928 TTCCGAAGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCT CMM3925 TTCCGAAGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCT CMM3923 TTCCGAAGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCT CMM3905 TTCCGAAGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCT CMM3937 TTCCGAAGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCT CMM3940 TTCCGAAGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCT CMM3938 TTCCGAAGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCT CMM3899 TTCCGAAGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCT Botryosphaeria_dothidea_CAP288 TTCCGAAGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCT Botryosphaeria_dothidea_CMW8000 TTCCGAAGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCT Botryosphaeria_corticis_CBS119047 TTCCGAAGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCTCTGCT Botryosphaeria_corticis_ATCC_22927 TTCCGAAGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCTCTGCT Botryosphaeria_fabicerciana_CMW24703 TTCCGAAGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCT Botryosphaeria_fabicerciana_CMW27094 TTCCGAAGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCT Botryosphaeria_scharifii_CBS124703 TTCCGAAGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCT Botryosphaeria_scharifii_CBS124702 TTCCGAAGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCT Botryosphaeria_ramosum_CBS122069 TTCCGAAGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCT Botryosphaeria__mamane_CMW13433 TTCCGAGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCT Botryosphaeria__mamane_CMW13429 TTCCGAGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCT CMM3941 TTCCGAGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCT CMM1390 TTCCGAGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCT Botryosphaeria_atrovirens_CMW22674 TTCCGAGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCT Botryosphaeria_atrovirens_CMW22682 TTCCGAGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCT Pseudofusicoccum_stromaticum_CMW13434 TTCCGAAGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCTCTGCT Pseudofusicoccum_stromaticum_CMW13435 TTCCGAAGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCTCTGCT Neoscytalidium_novaehollandiae_WAC1330 TGGTGTTGGGCACCGCCCTTCCGCGGGCGCGCCTCGAAGACCTCGGCGGT Neoscytalidium_novaehollandiae_WAC13275 TGGTGTTGGGCACCGCCCTTCCGCGGGCGCGCCTCGAAGACCTCGGCGGT Neoscytalidium_dimidiatum_WAC13284 TGGTGTTGGGCACCGCCCTTCCGCGGGCGCGCCTCAAAGACCTCGGCGGT CMM3979 TGGTGTTGGGCACCGCCCTTCCGCGGGCGCGCCTCAAAGACCTCGGCGGT Neoscytalidium_dimidiatum_PD103 TGGTGTTGGGCACCGCCCTTCCGCGGGCGCGCCTCAAAGACCTCGGCGGT CMM3980 TGGTGTTGGGCACCGCCCTTCCGCGGGCGCGCCTCAAAGACCTCGGCGGT CMM3928 TGGTATTGGGCACCGTCCTT-TGCGGGCGCGCCTCAAAGACCTCGGCGGT CMM3925 TGGTATTGGGCACCGTCCTT-TGCGGGCGCGCCTCAAAGACCTCGGCGGT CMM3923 TGGTATTGGGCACCGTCCTT-TGCGGGCGCGCCTCAAAGACCTCGGCGGT CMM3905 TGGTATTGGGCACCGTCCTT-TGCGGGCGCGCCTCAAAGACCTCGGCGGT CMM3937 TGGTATTGGGCACCGTCCTT-TGCGGGCGCGCCTCAAAGACCTCGGCGGT CMM3940 TGGTATTGGGCACCGTCCTT-TGCGGGCGCGCCTCAAAGACCTCGGCGGT CMM3938 TGGTATTGGGCACCGTCCTT-TGCGGGCGCGCCTCAAAGACCTCGGCGGT CMM3899 TGGTATTGGGCACCGTCCTT-TGCGGGCGCGCCTCAAAGACCTCGGCGGT Botryosphaeria_dothidea_CAP288 TGGTATTGGGCACCGTCCTT-TGCGGGCGCGCCTCAAAGACCTCGGCGGT Botryosphaeria_dothidea_CMW8000 TGGTATTGGGCACCGTCCTT-TGCGGGCGCGCCTCAAAGACCTCGGCGGT Botryosphaeria_corticis_CBS119047 TGGTATTGGGCACCGTCCCT-TGCGGCCGCGCCTCAAAGACCTCGGCGGT Botryosphaeria_corticis_ATCC_22927 TGGTATTGGGCACCGTCCCT-TGCGGGCGCGCCTCAAAGACCTCGGCGGT Botryosphaeria_fabicerciana_CMW24703 TGGTATTGGGCACCGTCCTT-TGCGGGCGCGCCTCAAAGACCTCGGCGGT Botryosphaeria_fabicerciana_CMW27094 TGGTATTGGGCACCGTCCTT-TGCGGGCGCGCCTCAAAGACCTCGGCGGT Botryosphaeria_scharifii_CBS124703 TGGTATTGGGCACCGTCCTT-TGCGGGCGCGCCTCAAAGACCTCGGCGGT Botryosphaeria_scharifii_CBS124702 TGGTATTGGGCACCGTCCTT-TGCGGGCGCGCCTCAAAGACCTCGGCGGT Botryosphaeria_ramosum_CBS122069 TGGTATTGGGCACCGTCCTT-TGCGGGCGCGCCTCAAAGACCTCGGCGGT Botryosphaeria__mamane_CMW13433 TGGTATTGGGCACCGCCCTTCTTCGGGCGCGCCTCAAAGACCTCGGCGGT Botryosphaeria__mamane_CMW13429 TGGTATTGGGCACCGCCCTTCTTCGGGCGCGCCTCAAAGACCTCGGCGGT CMM3941 TGGTATTGGGCACCGCCCTTCTTCGGGCGCGCCTCAAAGACCTCGGCGGT CMM1390 TGGTATTGGGCACCGCCCTTCTTCGGGCGCGCCTCAAAGACCTCGGCGGT Botryosphaeria_atrovirens_CMW22674 TGGTATTGGGCACCGCCCTTCTTCGGGCGCGCCTCAAAGACCTCGGCGGT Botryosphaeria_atrovirens_CMW22682 TGGTATTGGGCACCGCCCTTCTTCGGGCGCGCCTCAAAGACCTCGGCGGT Pseudofusicoccum_stromaticum_CMW13434 TGGTGTTGGGCGGCGTCCTC--CCGGACGCGCCTCAAAGACCTCGGCGGT Pseudofusicoccum_stromaticum_CMW13435 TGGTGTTGGGCGGCGTCCTC--CCGGACGCGCCTCAAAGACCTCGGCGGT Neoscytalidium_novaehollandiae_WAC1330 GGC-GTCTTGCCTCGAGCGTAGTAGAA--AACACCTCGCTCTGGAGCGCA Neoscytalidium_novaehollandiae_WAC13275 GGC-GTCTTGCCTCGAGCGTAGTAGAA--AACACCTCGCTCTGGAGCGCA Neoscytalidium_dimidiatum_WAC13284 GGC-GTCTTGCCTCGAGCGTAGTAGAA--AACACCTCGCTTTGGAGCGCA CMM3979 GGC-GTCTTGCCTCGAGCGTAGTAGAA--AACACCTCGCTTTGGAGCGCA Neoscytalidium_dimidiatum_PD103 GGC-GTCTTGCCTCGAGCGTAGTAGAA--AACACCTCGCTTTGGAGCGCA CMM3980 GGC-GTCTTGCCTCGAGCGTAGTAGAA--AACACCTCGCTTTGGAGCGCA CMM3928 GGC-GTCTTGCCTCAAGCGTAGTAGAACATACATCTCGCTTCGGAGCGCA CMM3925 GGC-GTCTTGCCTCAAGCGTAGTAGAACATACATCTCGCTTCGGAGCGCA CMM3923 GGC-GTCTTGCCTCAAGCGTAGTAGAACATACATCTCGCTTCGGAGCGCA CMM3905 GGC-GTCTTGCCTCAAGCGTAGTAGAACATACATCTCGCTTCGGAGCGCA CMM3937 GGC-GTCTTGCCTCAAGCGTAGTAGAACATACATCTCGCTTCGGAGCGCA CMM3940 GGC-GTCTTGCCTCAAGCGTAGTAGAACATACATCTCGCTTCGGAGCGCA CMM3938 GGC-GTCTTGCCTCAAGCGTAGTAGAACATACATCTCGCTTCGGAGCGCA CMM3899 GGC-GTCTTGCCTCAAGCGTAGTAGAACATACATCTCGCTTCGGAGCGCA Botryosphaeria_dothidea_CAP288 GGC-GTCTTGCCTCAAGCGTAGTAGAACATACATCTCGCTTCGGAGCGCA Botryosphaeria_dothidea_CMW8000 GGC-GTCTTGCCTCAAGCGTAGTAGAACATACATCTCGCTTCGGAGCGCA Botryosphaeria_corticis_CBS119047 GGC-GTCTTGCCTCAAGCGTAGTAGAACATACATCTCGCTTCGGAGCGCA Botryosphaeria_corticis_ATCC_22927 GGC-GTCTTGCCTCAAGCGTAGTAGAACATACATCTCGCTTCGGAGCGCA Botryosphaeria_fabicerciana_CMW24703 GGC-GTCTTGCCTCAAGCGTAGTAGAACATACATCTCGCTTCGGAGCGCA Botryosphaeria_fabicerciana_CMW27094 GGC-GTCTTGCCTCAAGCGTAGTAGAACATACATCTCGCTTCGGAGCGCA Botryosphaeria_scharifii_CBS124703 GGC-GTCTTGCCTCAAGCGTAGTAGAACATACATCTCGCTTCGGAGCGCA Botryosphaeria_scharifii_CBS124702 GGC-GTCTTGCCTCAAGCGTAGTAGAACATACATCTCGCTTCGGAGCGCA Botryosphaeria_ramosum_CBS122069 GGC-GTCTTGCCTCAAGCGTAGTAGAACATACATCTCGCTTCGGAGCGCA Botryosphaeria__mamane_CMW13433 GGCTGTCTTGCCTCAAGCGTAGTAGAA--TACACCTCGCTTCGGAGCGCA Botryosphaeria__mamane_CMW13429 GGCTGTCTTGCCTCAAGCGTAGTAGAA--TACACCTCGCTTCGGAGCGCA CMM3941 GGCTGTCTTGCCTCAAGCGTAGTAGAA--TACACCTCGCTTCGGAGCGCA CMM1390 GGCTGTCTTGCCTCAAGCGTAGTAGAA--TACACCTCGCTTCGGAGCGCA Botryosphaeria_atrovirens_CMW22674 GGCTGTCTTGCCTCAAGCGTAGTAGAA--TACACCTCGCTTCGGAGCGCA Botryosphaeria_atrovirens_CMW22682 GGCTGTCTTGCCTCAAGCGTAGTAGAA--TACACCTCGCTTCGGAGCGCA Pseudofusicoccum_stromaticum_CMW13434 GGC-GTCTTGCCTCAAGCGTAGTAGAA--AACACCTCGCTTTGGAGGACG Pseudofusicoccum_stromaticum_CMW13435 GGC-GTCTTGCCTCAAGCGTAGTAGAA--AACACCTCGCTTTGGAGGACG Neoscytalidium_novaehollandiae_WAC1330 CGGCG-CCGCCCGCCGGCCGAACCTTTTGAACT--TT-CTCAAGGTTGAC Neoscytalidium_novaehollandiae_WAC13275 CGGCG-CCGCCCGCCGGCCGAACCTTTTGAACT--TT-CTCAAGGTTGAC Neoscytalidium_dimidiatum_WAC13284 CGGCG-CCGCCCGCCGGACGAACCTTTTGAACT--TT-CTCAAGGTTGAC CMM3979 CGGCG-CCGCCCGCCGGACGAACCTTTTGAACT--TT-CTCAAGGTTGAC Neoscytalidium_dimidiatum_PD103 CGGCG-CCGCCCGCCGGACGAACCTTTTGAACT--TT-CTCAAGG???-- CMM3980 CGGCG-CCGCCCGCCGGACGAACCTTTTGAACT--TT-CTCAAGGTTGAC CMM3928 GGGCG-TCGCCCGCCGGACGAACCTTCTGAACT--TTTCTCAAGGTTGAC CMM3925 GGGCG-TCGCCCGCCGGACGAACCTTCTGAACT--TTTCTCAAGGTTGAC CMM3923 GGGCG-TCGCCCGCCGGACGAACCTTCTGAACT--TTTCTCAAGGTTGAC CMM3905 GGGCG-TCGCCCGCCGGACGAACCTTCTGAACT--TTTCTCAAGGTTGAC CMM3937 GGGCG-TCGCCCGCCGGACGAACCTTCTGAACT--TTTCTCAAGGTTGAC CMM3940 GGGCG-TCGCCCGCCGGACGAACCTTCTGAACT--TTTCTCAAGGTTGAC CMM3938 GGGCG-TCGCCCGCCGGACGAACCTTCTGAACT--TTTCTCAAGGTTGAC CMM3899 GGGCG-TCGCCCGCCGGACGAACCTTCTGAACT--TTTCTCAAGGTTGAC Botryosphaeria_dothidea_CAP288 GGGCG-TCGCCCGCCGGACGAACCTTCTGAACT--TTTCTCAAGGTTGAC Botryosphaeria_dothidea_CMW8000 GGGCG-TCGCCCGCCGGACGAACCTTCTGAACT--TTTCTCAAGGTTGAC Botryosphaeria_corticis_CBS119047 GGGCG-TCGCCCGCCGGACGAACCTTCCGAACT--TTTCTCAAGGTTGAC Botryosphaeria_corticis_ATCC_22927 GGGCG-TCGCCCGCCGGACGAACCTTCCGAACT--TTTCTCAAGGTTGAC Botryosphaeria_fabicerciana_CMW24703 GGGCG-TCGCCCGCCGGACGAACCTTCTGAACT--TTTCTCAAGGTTGAC Botryosphaeria_fabicerciana_CMW27094 GGGCG-TCGCCCGCCGGACGAACCTTCTGAACT--TTTCTCAAGGTTGAC Botryosphaeria_scharifii_CBS124703 GGGCG-TCGCCCGCCGGACGAACCTTCTGAACT--TTTCTCAAGGTTGAC Botryosphaeria_scharifii_CBS124702 GGGCG-TCGCCCGCCGGACGAACCTTCTGAACT--TTTCTCAAGGTTGAC Botryosphaeria_ramosum_CBS122069 GGGCG-TCGCCCGCCGGACGAACCTTCTGAACT--TTTCTCAAGGTTGAC Botryosphaeria__mamane_CMW13433 GGGCG-TCGCCCGCCGGACGAACCTTCTGAACT--TTTCTCAAGGTTGAC Botryosphaeria__mamane_CMW13429 GGGCG-TCGCCCGCCGGACGAACCTTCTGAACT--TTTCTCAAGGTTGAC CMM3941 GGGCG-TCGCCCGCCGGACGAACCTTCTGAACT--TTTCTCAAGGTTGAC CMM1390 GGGCG-TCGCCCGCCGGACGAACCTTCTGAACT--TTTCTCAAGGTTGAC Botryosphaeria_atrovirens_CMW22674 GGGCG-TCGCCCGCCGGACGAACCTTCTGAACT--TTTCTCAAGGTTGAC Botryosphaeria_atrovirens_CMW22682 GGGCG-TCGCCCGCCGGACGAACCTTCTGAACT--TTTCTCAAGGTTGAC Pseudofusicoccum_stromaticum_CMW13434 GGACGACCGCTCGCCGGACGAACCTT-TGAATTCATTTTCCTAGGTTGAC Pseudofusicoccum_stromaticum_CMW13435 GGACGACCGCTCGCCGGACGAACCTT-TGAATTCATTTTCCTAGGTTGAC Neoscytalidium_novaehollandiae_WAC1330 CTCGG???GAA--------------------------------------- Neoscytalidium_novaehollandiae_WAC13275 CTCGG???GAA--------------------------------------- Neoscytalidium_dimidiatum_WAC13284 CTCGGAT???GAAG------------------------------------ CMM3979 CTCGGATCAGGTAGGGATACCCG--------------------------- Neoscytalidium_dimidiatum_PD103 -------------------------------------------------- CMM3980 CTCGGATCAGGTAGGGATACCCGCTGAACTTAA---------GCATATCA CMM3928 CTCGGATCAGGTAGGGATACCCGCTGAACTTAA-GCATATCAATA?---- CMM3925 CTCGGATCAGGTAGGGATACCCGCTGAACTTAA-GCATATCAATAA---- CMM3923 CTCGGATCAGGTAGGGATACCCGCTGAACTTAA-GCATATCAATAA---- CMM3905 CTCGGATCAGGTAGGGATACCCGCTGAACTTAAAGCATATCAATAA---- CMM3937 CTCGGATCAGGTAGGGATACCCGCTGAACTTAA-GCATATCAATAA---- CMM3940 CTCGGATCAGGTAGGGATACCCGCTGAACTTAA-GCATATCAATAA---- CMM3938 CTCGGATCAGGTAGGGATACCCGCTGAACTTAA-GCATATCAATAAAG-- CMM3899 CTCGGATCAGGTAGGGATACCCGCTGAACTTAA-GCATATCAATATCGGT Botryosphaeria_dothidea_CAP288 CTCGGATCAGGTAGGGATACCCGCTGAACTTAA-GCATATCAATAA---- Botryosphaeria_dothidea_CMW8000 CTCGGAT???G--------------------------------------- Botryosphaeria_corticis_CBS119047 CTCGGATCAGGTAGGGATACCCGCTGAACTTAA-GCATATCA???C---- Botryosphaeria_corticis_ATCC_22927 CTCGGATCAGGTAGGGATACCCGCTGAACTTAA-GCATATCA???C---- Botryosphaeria_fabicerciana_CMW24703 CTCGGATCAGGTAGGGATACCCGCTGAACTTAA-GCATATCA???----- Botryosphaeria_fabicerciana_CMW27094 CTCGGATCAGGTAGGGATACCCGCTGAACTTAA-GCATATCA???----- Botryosphaeria_scharifii_CBS124703 CTCGGATCAGGTAGGGATACCCGCTGAACTTAA-????G----------- Botryosphaeria_scharifii_CBS124702 CTCGGATCAGGTAGGGATACCCGCTGAACTTAA-????G----------- Botryosphaeria_ramosum_CBS122069 CTCGGAT???G--------------------------------------- Botryosphaeria__mamane_CMW13433 CTCGGAT???AACGT----------------------------------- Botryosphaeria__mamane_CMW13429 CTCGGAT???CA-GG----------------------------------- CMM3941 CTCGGATCAGGTAGGGATACCCGCTGAACTTAA-GCATATCAATAAGCGC CMM1390 CTCGGATCAGGTAGGGATACCCGCTGAACTTAA-GCATATCAATAAGCGG Botryosphaeria_atrovirens_CMW22674 CTCGGATCAGGTAGGGATACCCGCTGAACTTAA-GCATATCA???----- Botryosphaeria_atrovirens_CMW22682 CTCGGATCAGGTAGGGATACCCGCTGAACTTAA-GCATATCA???----- Pseudofusicoccum_stromaticum_CMW13434 CTCGGAT???G--------------------------------------- Pseudofusicoccum_stromaticum_CMW13435 CTCGGAT???G--------------------------------------- Neoscytalidium_novaehollandiae_WAC1330 ------------------------------------------------GT Neoscytalidium_novaehollandiae_WAC13275 ------------------------------------------------GT Neoscytalidium_dimidiatum_WAC13284 -------------------------------------------------T CMM3979 ------------------------CTGAACTTAAGCATATCAATAAGCGT Neoscytalidium_dimidiatum_PD103 ------------------------TATCGACAAGCGTACCATCGAGAAGT CMM3980 ATAAGCGGAG???AAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGT CMM3928 ------??------AGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGT CMM3925 ------GCGGA???AGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGT CMM3923 ------GC-----GAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGT CMM3905 ------GGCG--GAAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGT CMM3937 ----GCGGA???-AAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGT CMM3940 ----GCGGA???CAAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGT CMM3938 --CGGAGGAA??CAAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGT CMM3899 CACTTTGATCTACAAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGT Botryosphaeria_dothidea_CAP288 ----------------------------GCGGAGGA???CATCGAGAAGT Botryosphaeria_dothidea_CMW8000 ----------------------------------------------AAGT Botryosphaeria_corticis_CBS119047 ----------------------------------------ATCGAGAAGT Botryosphaeria_corticis_ATCC_22927 ----------------------------------------ATCGAGAAGT Botryosphaeria_fabicerciana_CMW24703 ----------------------------------------------AAGT Botryosphaeria_fabicerciana_CMW27094 ----------------------------------------------AAGT Botryosphaeria_scharifii_CBS124703 ----------------------------------------------AAGT Botryosphaeria_scharifii_CBS124702 ----------------------------------------------AAGT Botryosphaeria_ramosum_CBS122069 ----------------------------------------------AAGT Botryosphaeria__mamane_CMW13433 --------------------------------------CCATCGAGAAGT Botryosphaeria__mamane_CMW13429 --------------------------------------ACATCGAGAAGT CMM3941 AA-------------GTGCGGTGGTATCGACAAGCGTACCATCGAGAAGT CMM1390 A----------------GCGGTGGTATCGACAAGCGTACCATCGAGAAGT Botryosphaeria_atrovirens_CMW22674 --------------------------------------CCATCGAGAAGT Botryosphaeria_atrovirens_CMW22682 --------------------------------------CCATCGAGAAGT Pseudofusicoccum_stromaticum_CMW13434 ----------------------------------------------AAGT Pseudofusicoccum_stromaticum_CMW13435 ----------------------------------------------AAGT Neoscytalidium_novaehollandiae_WAC1330 TCGAGAAGGTAAGCAAACTTTTTTCCGCCACCACTGCACGTGTGCTGGGT Neoscytalidium_novaehollandiae_WAC13275 TCGAGAAGGTAAGCAAACTTTTTTCCGCCACCACTGCACGTGTGCTGGGT Neoscytalidium_dimidiatum_WAC13284 TCGAGAAGGTAAGCAAACTTTTTTCCGCCACCACTGCACGTGTGCTGGGT CMM3979 TCGAGAAGGTAAGCAAACTTTTTTCCGCCACCACTGCACGTGTGCTGGGT Neoscytalidium_dimidiatum_PD103 TCGAGAAGGTAAGCAAACTTTTTTCCGCCACCACTGCACGTGTGCTGGGT CMM3980 TCGAGAAGGTAAGCAAACTTTTTTCCGCCACCACTGCACGTGTGCTGGGT CMM3928 TCGAGAAGGTAAGCACGCTTTTT----CTATGCCTGCACGTGTGCTGGGT CMM3925 TCGAGAAGGTAAGCACGCTTTTT----CTATGCCTGCACGTGTGCTGGGT CMM3923 TCGAGAAGGTAAGCACGCTTTTT----CTATGCCTGCACGTGTGCTGGGT CMM3905 TCGAGAAGGTAAGCACGCTTTTT----CTATGCCTGCACGTGTGCTGGGT CMM3937 TCGAGAAGGTAAGCACACATTTT----CTATGCCTGCACGTGTGCTGGGT CMM3940 TCGAGAAGGTAAGCACACATTTT----CTATGCCTGCACGTGTGCTGGGT CMM3938 TCGAGAAGGTAAGCACACATTTT----CTATGCCTGCACGTGTGCTGGGT CMM3899 TCGAGAAGGTAAGCACGCTTTTT----CTATGCCTGCACGTGTGCTGGGT Botryosphaeria_dothidea_CAP288 TCGAGAAGGTAAGCACGCATTTT----CTGTGCCTGCACGTGTGCTGGGT Botryosphaeria_dothidea_CMW8000 TCGAGAAGGTAAGCACACATTTT----CTGTGCCTGCACGTGTGCTGGGT Botryosphaeria_corticis_CBS119047 TCGAGAAGGTAAGCACACTTTTT----CTATGCCTGCACGTGTGCTGGGT Botryosphaeria_corticis_ATCC_22927 TCGAGAAGGTAAGCACACTTTTT----CTATGCCTGCACGTGTGCTGGGT Botryosphaeria_fabicerciana_CMW24703 TCGAGAAGGTAAGCACGCTTTTT----CTATGCCTGCACGTGTGCTGGGT Botryosphaeria_fabicerciana_CMW27094 TCGAGAAGGTAAGCACGCTTTTT----CTATGCCTGCACGTGTGCTGGGT Botryosphaeria_scharifii_CBS124703 TCGAGAAGGTAAGCACACTTTTT----CTATGCCTGCACGTGTGCTGGGT Botryosphaeria_scharifii_CBS124702 TCGAGAAGGTAAGCACACTTTTT----CTATGCCTGCACGTGTGCTGGGT Botryosphaeria_ramosum_CBS122069 TCGAGAAGGTAAGCACACTTTTT----CTATGCCTGCACGTGTGCTGGGT Botryosphaeria__mamane_CMW13433 TCGAGAAGGTAAGCACCCTTTCCGC--CTCTCCCTGCACGAGTGCTAGGT Botryosphaeria__mamane_CMW13429 TCGAGAAGGTAAGCACCCTTTCCGC--CTCTCCCTGCACGAGTGCTAGGT CMM3941 TCGAGAAGGTAAGCACCCTTTCCGC--CTCTCCCTGCACGAGTGCTAGGT CMM1390 TCGAGAAGGTAAGCACCCTTTCCGC--CTCTCCCTGCACGAGTGCTAGGT Botryosphaeria_atrovirens_CMW22674 TCGAGAAGGTAAGCACCCTTTCCGC--CTCTCCCTGCACGAGTGCTAGGT Botryosphaeria_atrovirens_CMW22682 TCGAGAAGGTAAGCACCCTTTCCGC--CTCTCCCTGCACGAGTGCTAGGT Pseudofusicoccum_stromaticum_CMW13434 TCGAGAAGGTGAGCCAGACTTTTTTTGCCGACACCACCCATGTGCAGCGA Pseudofusicoccum_stromaticum_CMW13435 TCGAGAAGGTGAGCCAGACTTTTTTTGCCGACACCACCCATGTGCAGCGA Neoscytalidium_novaehollandiae_WAC1330 TC--------------CTGCGCCGAATTTGCCTTATCGCTTG------GG Neoscytalidium_novaehollandiae_WAC13275 TC--------------CTGCGCCGAATTTGCCTTATCGCTTG------GG Neoscytalidium_dimidiatum_WAC13284 TC--------------CTGCGCCGAATTTGCCTTATCGCTTG------GG CMM3979 TC--------------CTGCGCCGAATTTGCCTTATCGCTTG------GG Neoscytalidium_dimidiatum_PD103 TC--------------CTGCGCCGAATTTGCCTTATCGCTTG------GG CMM3980 TC--------------CTGCGCCGAATTTGCCTTATCGCTTG------GG CMM3928 TC--------------CTGCGCCGAATTTGCCTTATCACTC----TCTGG CMM3925 TC--------------CTGCGCCGAATTTGCCTTATCACTC----TCTGG CMM3923 TC--------------CTGCGCCGAATTTGCCTTATCACTC----TCTGG CMM3905 TC--------------CTGCGCCGAATTTGCCTTATCACTC----TCTGG CMM3937 TC--------------CTGCGCCGAATTTGCCTTATCACTC----TCTGG CMM3940 TC--------------CTGCGCCGAATTTGCCTTATCACTC----TCTGG CMM3938 TC--------------CTGCGCCGAATTTGCCTTATCACTC----TCTGG CMM3899 TC--------------CTGCGCCGAATTTGCCTTATCACTC----TCTGG Botryosphaeria_dothidea_CAP288 TC--------------CTGCGCCGAATTTGCCTTATCACTC------TGG Botryosphaeria_dothidea_CMW8000 TC--------------CTGCGCCGAATTTGCCTTATCACTC------TGG Botryosphaeria_corticis_CBS119047 TC--------------CTGCGCCGAATTTGCCTTATCACTCACTCTCTGG Botryosphaeria_corticis_ATCC_22927 TC--------------CTGCGCCGAATTTGCCTTATCACTCACTCTCTGG Botryosphaeria_fabicerciana_CMW24703 TC--------------CTGCGCCGAATTTGCCTTATCACTC----TCTGG Botryosphaeria_fabicerciana_CMW27094 TC--------------CTGCGCCGAATTTGCCTTATCACTC----TCTGG Botryosphaeria_scharifii_CBS124703 TC--------------CTGCGCCGAATTTGCCTTATCACTC------TGG Botryosphaeria_scharifii_CBS124702 TC--------------CTGCGCCGAATTTGCCTTATCACTC------TGG Botryosphaeria_ramosum_CBS122069 TC--------------CTGCGCCGAATTTGCCTTATCACTC------TGG Botryosphaeria__mamane_CMW13433 CC--------------CGTGCCCGAATTTGCCTTATCACTC-------GA Botryosphaeria__mamane_CMW13429 CC--------------CGTGCCCGAATTTGCCTTATCACTC-------GA CMM3941 CC--------------CGTGCCCGAATTTGCCTTATCACTC-------GA CMM1390 CC--------------CGTGCCCGAATTTGCCTTATCACTC-------GA Botryosphaeria_atrovirens_CMW22674 CC--------------CGTGCCCGAATTTGCCTTATCACTC-------GA Botryosphaeria_atrovirens_CMW22682 CC--------------CGTGCCCGAATTTGCCTTATCACTC-------GA Pseudofusicoccum_stromaticum_CMW13434 TCTCGCTGCACGCAATCCTGGCCGGATTTGCCT-ATCACTC-------GA Pseudofusicoccum_stromaticum_CMW13435 TCTCGCTGCACGCAATCCTGGCCGGATTTGCCT-ATCACTC-------GA Neoscytalidium_novaehollandiae_WAC1330 TGAGGGGCATTTTGGTGGTGGGGTTGGCCCGCGCTAGGCCTCGTTCGGTC Neoscytalidium_novaehollandiae_WAC13275 TGAGGGGCATTTTGGTGGTGGGGTTGGCCCGCGCTAGGCCTCGTTCGGTC Neoscytalidium_dimidiatum_WAC13284 TGAGGGGCATTTTGGTGGTGGGGTTGGCCCGCGCTAGGCCTCGTTCGGTC CMM3979 TGAGGGGCATTTTGGTGGTGGGGTTGGCCCGCGCTAGGCCTCGTTCGGTC Neoscytalidium_dimidiatum_PD103 TGAGGGGCATTTTGGTGGTGGGGTTGGCCCGCGCTAGGCCTCGTTCGGTC CMM3980 TGAGGGGCATTTTGGTGGTGGGGTTGGCCCGCGCTAGGCCTCGTTCGGTC CMM3928 TGAGGGGCAATTTCTTGGTGGGGCTGGCCCGCGCTAAGCCTCGTTTGGTC CMM3925 TGAGGGGCAATTTCTTGGTGGGGCTGGCCCGCGCTAAGCCTCGTTTGGTC CMM3923 TGAGGGGCAATTTCTTGGTGGGGCTGGCCCGCGCTAAGCCTCGTTTGGTC CMM3905 TGAGGGGCAATTTCTTGGTGGGGCTGGCCCGCGCTAAGCCTCGTTTGGTC CMM3937 TGAGGGGCAATTTCTTGGTGGGGCTGGCCCGCGCTAAGCCTCGTTTGGTC CMM3940 TGAGGGGCAATTTCTTGGTGGGGCTGGCCCGCGCTAAGCCTCGTTTGGTC CMM3938 TGAGGGGCAATTTCTTGGTGGGGCTGGCCCGCGCTAAGCCTCGTTTGGTC CMM3899 TGAGGGGCAATTTCTTGGTGGGGCTGGCCCGCGCTAAGCCTCGTTTGGTC Botryosphaeria_dothidea_CAP288 TGAGGGGCAATTTCTTGGTGGGGCTGGCCCGCGCTAAGCCTCGTTTGGTC Botryosphaeria_dothidea_CMW8000 TGAGGGGCAATTTCTTGGTGGGGCTGGCCCGCGCTAAGCCTCGTTTGGTC Botryosphaeria_corticis_CBS119047 TGAGGGGCAATTTCTTGGTGGGGCTGGCCCGCGCTAAGCCTCGTTTGGTC Botryosphaeria_corticis_ATCC_22927 TGAGGGGCAATTTCTTGGTGGGGCTGGCCCGCGCTAAGCCTCGTTTGGTC Botryosphaeria_fabicerciana_CMW24703 TGAGGGGCAATTTCTTGGTGGGGCTGGCCCGCGCTAAGCCTCGTTTGGTC Botryosphaeria_fabicerciana_CMW27094 TGAGGGGCAATTTCTTGGTGGGGCTGGCCCGCGCTAAGCCTCGTTTGGTC Botryosphaeria_scharifii_CBS124703 TGAGGGGCAATTTCTTGGTGGGGTTGGCCCGCGCTAAGCCTCGTTTGGTC Botryosphaeria_scharifii_CBS124702 TGAGGGGCAATTTCTTGGTGGGGTTGGCCCGCGCTAAGCCTCGTTTGGTC Botryosphaeria_ramosum_CBS122069 TGAGGGGCAATTTCTTGGTGGGGTTGGCCCGCGCTAAGCCTCGTTTGGCC Botryosphaeria__mamane_CMW13433 TGAGGGGCATTTTCGTGGTGGGGTTGGCCCGCGCTAGGCCGCGTTTGGTT Botryosphaeria__mamane_CMW13429 TGAGGGGCATTTTCGTGGTGGGGTTGGCCCGCGCTAGGCCGCGTTTGGTT CMM3941 TGAGGGGCATTTTCGTGGTGGGGTTGGCCCGCGCTAGGCCGCGTTTGGTT CMM1390 TGAGGGGCATTTTCGTGGTGGGGTTGGCCCGCGCTAGGCCGCGTTTGGTT Botryosphaeria_atrovirens_CMW22674 TGAGGGGCATTTTCGTGGTGGGGTTGGCCCGCGCTAGGCCGCGTTTGGTT Botryosphaeria_atrovirens_CMW22682 TGAGGGGCATTTTCGTGGTGGGGTTGGCCCGCGCTAGGCCGCGTTTGGTT Pseudofusicoccum_stromaticum_CMW13434 TGAGGGGCATTTTCGTGGTGGGGTTGGTCGGCGCTAGGCCGCGTCGGTCG Pseudofusicoccum_stromaticum_CMW13435 TGAGGGGCATTTTCGTGGTGGGGTTGGTCGGCGCTAGGCCGCGTCGGTCG Neoscytalidium_novaehollandiae_WAC1330 CTCGGCAAAATCTCCGCATCAGGATTTTTTGC-----------GACCG-G Neoscytalidium_novaehollandiae_WAC13275 CTCGGCAAAATCTCCGCATCAGGATTTTTTGC-----------GACCG-G Neoscytalidium_dimidiatum_WAC13284 TTCGGCAAAATCTCCGCATCAGGATTTTTTGC-----------GACCG-G CMM3979 TTCGGCAAAATCTCCGCATCAGGATTTTTTGC-----------GACCG-G Neoscytalidium_dimidiatum_PD103 TTCGGCAAAATCTCCGCATCAGGATTTTTTGC-----------GACCG-G CMM3980 TTCGGCAAAATCTCCGCATCAGGATTTTTTGC-----------GACCG-G CMM3928 TTCGGCAAAATCTCCGCATCTGGATTTTTTGT-----------GACCG-G CMM3925 TTCGGCAAAATCTCCGCATCTGGATTTTTTGT-----------GACCG-G CMM3923 TTCGGCAAAATCTCCGCATCTGGATTTTTTGT-----------GACCG-G CMM3905 TTCGGCAAAATCTCCGCATCTGGATTTTTTGT-----------GACCG-G CMM3937 TTCGGCAAAATCTCCGCATCTGGATTTTTTGT-----------GACCG-G CMM3940 TTCGGCAAAATCTCCGCATCTGGATTTTTTGT-----------GACCG-G CMM3938 TTCGGCAAAATCTCCGCATCTGGATTTTTTGT-----------GACCG-G CMM3899 TTCGGCAAAATCTCCGCATCTGGATTTTTTGT-----------GACCG-G Botryosphaeria_dothidea_CAP288 TTCGGCAAAATCTCCGCATCTGGATTTTTTGT-----------GACCG-G Botryosphaeria_dothidea_CMW8000 TTCGGCAAAATCTCCGCATCTGGATTTTTTGT-----------GACCG-G Botryosphaeria_corticis_CBS119047 TTCGGCAAAATCTCCGCATCTGGATTTTTTGT-----------GACCG-G Botryosphaeria_corticis_ATCC_22927 TTCGGCAAAATCTCCGCATCTGGATTTTTTGT-----------GACCG-G Botryosphaeria_fabicerciana_CMW24703 TTCGGCAAAATCTCCGCATCTGGATTTTTTGT-----------GACCG-G Botryosphaeria_fabicerciana_CMW27094 TTCGGCAAAATCTCCGCATCTGGATTTTTTGT-----------GACCG-G Botryosphaeria_scharifii_CBS124703 TTCGGCAAAATCTCCGCATCTGGATTTTTTTTTTT-----GGAGGCCG-G Botryosphaeria_scharifii_CBS124702 TTCGGCAAAATCTCCGCATCTGGATTTTTTTTTT------GGAGGCCG-G Botryosphaeria_ramosum_CBS122069 TTCGGCAAAATCTCCGCATCTGGATTTTTTTT--------GGAGGCCG-G Botryosphaeria__mamane_CMW13433 CTCGGCAAAATGTCCGCTTGTGGATTTTTTGC-----------GACCG-G Botryosphaeria__mamane_CMW13429 CTCGGCAAAATGTCCGCTTGTGGATTTTTTGC-----------GACCG-G CMM3941 CTCGGCAAAATGTCCGCTTGTGGATTTTTTGC-----------GACCG-G CMM1390 CTCGGCAAAATGTCCGCTTGTGGATTTTTTGC-----------GACCG-G Botryosphaeria_atrovirens_CMW22674 CTCGGCAAAATGTCCGCTTGTGGATTTTTTGC-----------GACCG-G Botryosphaeria_atrovirens_CMW22682 CTCGGCAAAATGTCCGCTTGTGGATTTTTTGC-----------GACCG-G Pseudofusicoccum_stromaticum_CMW13434 TTCGGCAAAATGCCCGCTTTGGGTTTTTTTGCGACCGGCGTCAGCCCGAG Pseudofusicoccum_stromaticum_CMW13435 TTCGGCAAAATGCCCGCTTTGGGTTTTTTTGCGACCGGCGTCAGCCCGAG Neoscytalidium_novaehollandiae_WAC1330 CGTGCGACCGACACG--CGCCTCCTAGCGTCGCTTGCAGCCACTCACGTT Neoscytalidium_novaehollandiae_WAC13275 CGTGCGACCGACACG--CGCCTCCTAGCGTCGCTTGCAGCCACTCACGTT Neoscytalidium_dimidiatum_WAC13284 CGTGCGACCGACACG--CGCCTCCTAGCGTCGCTTGCAGCCACTCACGTC CMM3979 CGTGCGACCGACACG--CGCCTCCTAGCGTCGCTTGCAGCCACTCACGTC Neoscytalidium_dimidiatum_PD103 CGTGCGACCGACACG--CGCCTCCTAGCGTCGCTTGCAGCCACTCACGTC CMM3980 CGTGCGACCGACACG--CGCCTCCTAGCGTCGCTTGCAGCCACTCACGTC CMM3928 CGTGCGACCGACGCGAACACCCCTCACCAATGCTTCCGGCCACTCACGTC CMM3925 CGTGCGACCGACGCGAACACCCCTCACCAATGCTTCCGGCCACTCACGTC CMM3923 CGTGCGACCGACGCGAACACCCCTCACCAATGCTTCCAGCCACTCACGTC CMM3905 CGTGCGACCGACGCGAACACCCCTCACCAATGCTTCCAGCCACTCACGTC CMM3937 CGTGCGACCGACGCGAACACCCCTCACCAACGCTTCCAGCCACTCACGTT CMM3940 CGTGCGACCGACGCGAACACCCCTCACCAACGCTTCCAGCCACTCACGTT CMM3938 CGTGCGACCGACGCGAACACCCCTCACCAACGCTTCCAGCCACTCACGTT CMM3899 CGTGCGACCGACGCGAACACCCCTCACCAATGCTTCCAGCCACTCACGTC Botryosphaeria_dothidea_CAP288 CGTGCGACCGACGCGAACACCCCTCACCAACGCTTCCAGCCACTCACGTT Botryosphaeria_dothidea_CMW8000 CGTGCGACCGACGCGAACACCCCTCACCAACGCTTCCAGCCACTCACGTT Botryosphaeria_corticis_CBS119047 CGTGCGACCGACGCGAACACCCCTCACCAACGCTGCCAGCCACTCACGTC Botryosphaeria_corticis_ATCC_22927 CGTGCGACCGACGCGAACACCCCTCACCAACGCTGCCAGCCACTCACGTC Botryosphaeria_fabicerciana_CMW24703 CGTGCGACCGACGCGAACACCCCTCACCAATGCTTCCAGCCACTCACGTC Botryosphaeria_fabicerciana_CMW27094 CGTGCGACCGACGCGAACACCCCTCACCAATGCTTCCAGCCACTCACGTC Botryosphaeria_scharifii_CBS124703 CGTGCGACCGACGCGAATACCCCTCACCAACGCTTCCAACCACTCACGTT Botryosphaeria_scharifii_CBS124702 CGTGCGACCGACGCGAATACCCCTCACCAACGCTTCCAACCACTCACGTT Botryosphaeria_ramosum_CBS122069 CGTGCGACCGACGCGAACACCCCTCACCAACGCATCCAACCACTCACGTT Botryosphaeria__mamane_CMW13433 CGTGCGACCGAAACGCGCGCCCTCCGC-------TCCAGCCACTCACGTC Botryosphaeria__mamane_CMW13429 CGTGCGACCGAAACGCGCGCCCTCCGC-------TCCAGCCACTCACGTC CMM3941 CGTGCGACCGAAACGCGCGCCCTCCGC-------TCCAGCCACTCACGTC CMM1390 CGTGCGACCGAAACGCGCGCCCTCCGC-------TCCAGCCACTCACGTC Botryosphaeria_atrovirens_CMW22674 CGTGCGACCGAAACGCGCGCCCTCCGC-------TCCAGCCACTCACGTC Botryosphaeria_atrovirens_CMW22682 CGTGCGACCGAAACGCGCGCCCTCCGC-------TCCAGCCACTCACGTC Pseudofusicoccum_stromaticum_CMW13434 CGTGCATGGTGCACGACCGCCCCTCGCCAAAAATTTCCTGCG-TCATCTG Pseudofusicoccum_stromaticum_CMW13435 CGTGCATGGTGCACGACCGCCCCTCGCCAAAAATTTCCTGCG-TCATCTG Neoscytalidium_novaehollandiae_WAC1330 CGCCCGCGCGATCAGATGCTAACCGCCACCATAACAGGAAGCCGCTGAAC Neoscytalidium_novaehollandiae_WAC13275 CGCCCGCGCGATCAGATGCTAACCGCCACCATAACAGGAAGCCGCTGAAC Neoscytalidium_dimidiatum_WAC13284 CGCCCGCGCAATCAGATGCTAACCGACACCATAACAGGAAGCCGCTGAAC CMM3979 CGCCCGCGCAATCAGATGCTAACCGACACCATAACAGGAAGCCGCTGAAC Neoscytalidium_dimidiatum_PD103 CGCCCGCGCGATCAGATGCTAAC-GCCACCATAACAGGAAGCCGCTGAAC CMM3980 CGCCCGCGCGATCAGATGCTAACCGCCACCATAACAGGAAGCCGCTGAAC CMM3928 CGTCTGTGCGACCATATGCTAACCGCCGCCACAACAGGAAGCCGCTGAGC CMM3925 CGTCTGTGCGACCATATGCTAACCGCCGCCACAACAGGAAGCCGCTGAGC CMM3923 CGTCTGTGCGACCATATGCTAACCGCCGCCACAACAGGAAGCCGCTGAGC CMM3905 CGTCTGTGCGACCATATGCTAACCGCCGCCACAACAGGAAGCCGCTGAGC CMM3937 CGTCTATGCGACCATATGCTAACCACCGCCACAACAGGAAGCCGCTGAGC CMM3940 CGTCTATGCGACCATATGCTAACCACCGCCACAACAGGAAGCCGCTGAGC CMM3938 CGTCTATGCGACCATATGCTAACCACCGCCACAACAGGAAGCCGCTGAGC CMM3899 CGTCTGTGCGACCATATGCTAACCGCCGCCACAACAGGAAGCCGCTGAGC Botryosphaeria_dothidea_CAP288 CGTCTATGCGACCATATGCTAACCACCGCCACAACAGGAAGCCGCTGAGC Botryosphaeria_dothidea_CMW8000 CGTCTATGCGACCATATGCTAACCACCGCCACAACAGGAAGCCGCTGAGC Botryosphaeria_corticis_CBS119047 CGTCTGTGCGACCATATGCTAACCACCGCCACAACAGGAAGCCGCTGAGC Botryosphaeria_corticis_ATCC_22927 CGTCTGTGCGACCATATGCTAACCACCGCCACAACAGGAAGCCGCTGAGC Botryosphaeria_fabicerciana_CMW24703 CGTCTGTGCGACCATATGCTAACCGCCGCCACAACAGGAAGCCGCTGAGC Botryosphaeria_fabicerciana_CMW27094 CGTCTGTGCGACCATATGCTAACCGCCGCCACAACAGGAAGCCGCTGAGC Botryosphaeria_scharifii_CBS124703 CGCCTATGCGACCATACGCTAACCACCGCCACAACAGGAAGCCGCCGAGC Botryosphaeria_scharifii_CBS124702 CGCCTATGCGACCATACGCTAACCACCGCCACAACAGGAAGCCGCCGAGC Botryosphaeria_ramosum_CBS122069 CGCCGATGCGACCATACGCTAACCACCGCCACAACAGGAAGCCGCCGAGC Botryosphaeria__mamane_CMW13433 CGTCCGTGCGACCAGCTGCTAACCCTCGCCTCAACAGGAAGCCGCTGAGC Botryosphaeria__mamane_CMW13429 CGTCCGTGCGACCAGCTGCTAACCCTCGCCTCAACAGGAAGCCGCTGAGC CMM3941 CGTCCGTGCGACCAGCTGCTAACCCTCGCCTCAACAGGAAGCCGCTGAGC CMM1390 CGTCCGTGCGACCAGCTGCTAACCCTCGCCTCAACAGGAAGCCGCTGAGC Botryosphaeria_atrovirens_CMW22674 CGTCCGTGCGACCAGCTGCTAACCCTCGCCTCAACAGGAAGCCGCTGAGC Botryosphaeria_atrovirens_CMW22682 CGTCCGTGCGACCAGCTGCTAACCCTCGCCTCAACAGGAAGCCGCTGAGC Pseudofusicoccum_stromaticum_CMW13434 ATTCCGCGCGACACGATGCTAACGCCCACC---ACAGGAAGCCGCTGAGC Pseudofusicoccum_stromaticum_CMW13435 ATTCCGCGCGACACGATGCTAACGCCCACC---ACAGGAAGCCGCTGAGC Neoscytalidium_novaehollandiae_WAC1330 TCGGCAAGGGTTC------------------------------------- Neoscytalidium_novaehollandiae_WAC13275 TCGGCAAGGGTTC------------------------------------- Neoscytalidium_dimidiatum_WAC13284 TCGGCAAGGGTTC------------------------------------- CMM3979 TCGGCAAGGGTTCCTTCAAGTACGCTTGGGTCCTTGACAAGCTCAAGGCT Neoscytalidium_dimidiatum_PD103 TCGGCAAGGGTTCCTTCAAGTACGCCTGGGTCCTTGACAAGCTCAAGGCT CMM3980 TCGGCAAGGGTTCCTTCAAGTACGCTTGGGTCCTTGACAAGCTCAAGGCT CMM3928 TCGGCAAGGGTTCCTTCAAGTACGCCTGGGTCCTTGACAAGCTCAAGGCT CMM3925 TCGGCAAGGGTTCCTTCAAGTACGCCTGGGTCCTTGACAAGCTCAAGGCT CMM3923 TCGGCAATGGTTCCTTCAAGTACGCCTGGGTCCTTGACAAGCTCAAGGCT CMM3905 TCGGCAAGGGTTCCTTCAAGTACGCCTGGGTCCTTGACAAGCTCAAGGCT CMM3937 TCGGCAAGGGTTCCTTCAAGTACGCCTGGGTCCTTGACAAGCTCAAGGCT CMM3940 TCGGCAAGGGTTCCTTCAAGTACGCCTGGGTCCTTGACAAGCTCAAGGCT CMM3938 TCGGCAAGGGTTCCTTCAAGTACGCCTGGGTCCTTGACAAGCTCAAGGCT CMM3899 TCGGCAAGGGTTCCTTCAAGTACGCCTGGGTCCTTGACAAGCTCAAGGCT Botryosphaeria_dothidea_CAP288 TCGGTAAGGGTTCCTTCAAGTA---------------------------- Botryosphaeria_dothidea_CMW8000 TCGGTAAGGGTTC------------------------------------- Botryosphaeria_corticis_CBS119047 TCGGTAAGGGTTCCTTCAAGTA---------------------------- Botryosphaeria_corticis_ATCC_22927 TCGGTAAGGGTTCCTTCAAGTA---------------------------- Botryosphaeria_fabicerciana_CMW24703 TTGGCAAGGGT--------------------------------------- Botryosphaeria_fabicerciana_CMW27094 TTGGCAAGGGT--------------------------------------- Botryosphaeria_scharifii_CBS124703 TCGGCAAGGGTTC------------------------------------- Botryosphaeria_scharifii_CBS124702 TCGGCAAGGGTTC------------------------------------- Botryosphaeria_ramosum_CBS122069 TCGGCAAGGGTTC------------------------------------- Botryosphaeria__mamane_CMW13433 TCGGCAAGGGTTCCTTCAAGTACGCCTGGGTCCTTGACAAGCTCAAGGCT Botryosphaeria__mamane_CMW13429 TCGGCAAGGGTTCCTTCAAGTACGCCTGGGTCCTTGACAAGCTCAAGGCT CMM3941 TCGGCAAGGGTTCCTTCAAGTACGCCTGGGTCCTTGACAAGCTCAAGGCT CMM1390 TCGGCAAGGGTTCCTTCAAGTACGCCTGGGTCCTTGACAAGCTCAAGGCT Botryosphaeria_atrovirens_CMW22674 TCGGCAAGGGTTCCTTCAAGTA---------------------------- Botryosphaeria_atrovirens_CMW22682 TCGGCAAGGGTTCCTTCAAGTA---------------------------- Pseudofusicoccum_stromaticum_CMW13434 TCGGTAAGGGTTC------------------------------------- Pseudofusicoccum_stromaticum_CMW13435 TCGGTAAGGGTTC------------------------------------- Neoscytalidium_novaehollandiae_WAC1330 -------------------------------------------------- Neoscytalidium_novaehollandiae_WAC13275 -------------------------------------------------- Neoscytalidium_dimidiatum_WAC13284 -------------------------------------------------- CMM3979 GAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGAC Neoscytalidium_dimidiatum_PD103 -------------------------------------------------- CMM3980 GAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGAC CMM3928 GAGCGTGAGCGTGGTATCACCATCGACATCGCCCTCTGGAAGTTCGAGAC CMM3925 GAGCGTGAGCGTGGTATCACCATCGACATCGCCCTCTGGAAGTTCGAGAC CMM3923 GAGCGTGAGCGTGGTATCACCATCGACATCGCCCTCTGGAAGTTCGAGAC CMM3905 GAGCGTGAGCGTGGTATCACCATCGACATCGCCCTCTGGAAGTTCGAGAC CMM3937 GAGCGTGAGCGTGGTATCACCATCGACATCGCCCTCTGGAAGTTCGAGAC CMM3940 GAGCGTGAGCGTGGTATCACCATCGACATCGCCCTCTGGAAGTTCGAGAC CMM3938 GAGCGTGAGCGTGGTATCACCATCGACATCGCCCTCTGGAAGTTCGAGAC CMM3899 GAGCGTGAGCGTGGTATCACCATCGACATCGCCCTCTGGAAGTTCGAGAC Botryosphaeria_dothidea_CAP288 -------------------------------------------------- Botryosphaeria_dothidea_CMW8000 -------------------------------------------------- Botryosphaeria_corticis_CBS119047 -------------------------------------------------- Botryosphaeria_corticis_ATCC_22927 -------------------------------------------------- Botryosphaeria_fabicerciana_CMW24703 -------------------------------------------------- Botryosphaeria_fabicerciana_CMW27094 -------------------------------------------------- Botryosphaeria_scharifii_CBS124703 -------------------------------------------------- Botryosphaeria_scharifii_CBS124702 -------------------------------------------------- Botryosphaeria_ramosum_CBS122069 -------------------------------------------------- Botryosphaeria__mamane_CMW13433 GAGCGTGAGCGTGGTATCACCATCGACATCGCCCTCTGGAAGTTCGAGAC Botryosphaeria__mamane_CMW13429 GAGCGTGAGCGTGGTATCACCATCGACATCGCCCTCTGGAAGTTCGAGAC CMM3941 GAGCGTGAGCGTGGTATCACCATCGACATCGCCCTCTGGAAGTTCGAGAC CMM1390 GAGCGTGAGCGTGGTATCACCATCGACATCGCCCTCTGGAAGTTCGAGAC Botryosphaeria_atrovirens_CMW22674 -------------------------------------------------- Botryosphaeria_atrovirens_CMW22682 -------------------------------------------------- Pseudofusicoccum_stromaticum_CMW13434 -------------------------------------------------- Pseudofusicoccum_stromaticum_CMW13435 -------------------------------------------------- Neoscytalidium_novaehollandiae_WAC1330 -------------------------------------------------- Neoscytalidium_novaehollandiae_WAC13275 -------------------------------------------------- Neoscytalidium_dimidiatum_WAC13284 -------------------------------------------------- CMM3979 CCCGAAGTACTATGTCACCGTCATCGACGCCCCCGGTCACCGTGATTTCA Neoscytalidium_dimidiatum_PD103 -------------------------------------------------- CMM3980 CCCGAAGTACTATGTCACCGTCATCGACGCCCCCGGTCACCGTGATTTCA CMM3928 CCCGAAGTACTATGTCACCGTCATCGACGCCCCCGGTCATCGTGACTTCA CMM3925 CCCGAAGTACTATGTCACCGTCATCGACGCCCCCGGTCATCGTGACTTCA CMM3923 CCCGAAGTACTATGTCACCGTCATCGACGCCCCCGGTCAT---------- CMM3905 CCCGAAGTACTATGTCACCGTCATCGACGCCCCCGGTCATCGTGACTTCA CMM3937 CCCGAAGTACTATGTCACCGTCATCGACGCCCCCGGTCACCGTGACTTCA CMM3940 CCCGAAGTACTATGTCACCGTCATCGACGCCCCCGGTCACCGTGACTTCA CMM3938 CCCGAAGTACTATGTCACCGTCATCGACGCCCCCGGTCACCGTGACTTCA CMM3899 CCCGAAGTACTATGTCACCGTCATCGACGCCCCC---------------- Botryosphaeria_dothidea_CAP288 -------------------------------------------------- Botryosphaeria_dothidea_CMW8000 -------------------------------------------------- Botryosphaeria_corticis_CBS119047 -------------------------------------------------- Botryosphaeria_corticis_ATCC_22927 -------------------------------------------------- Botryosphaeria_fabicerciana_CMW24703 -------------------------------------------------- Botryosphaeria_fabicerciana_CMW27094 -------------------------------------------------- Botryosphaeria_scharifii_CBS124703 -------------------------------------------------- Botryosphaeria_scharifii_CBS124702 -------------------------------------------------- Botryosphaeria_ramosum_CBS122069 -------------------------------------------------- Botryosphaeria__mamane_CMW13433 CCCGAAGTACTATGTCACCGTCATTGACGCCCCCGGTCACCGTGACTTCA Botryosphaeria__mamane_CMW13429 CCCGAAGTACTATGTCACCGTCATTGACGCCCCCGGTCACCGTGACTTCA CMM3941 CCCGAAGTACTATGTCACCGTCATTGACGCCCCCGGTCACCGTGACTTCA CMM1390 CCCGAAGTACTATGTCACCGTCATTGACGCCCCCGGTCACCGTGACTTCA Botryosphaeria_atrovirens_CMW22674 -------------------------------------------------- Botryosphaeria_atrovirens_CMW22682 -------------------------------------------------- Pseudofusicoccum_stromaticum_CMW13434 -------------------------------------------------- Pseudofusicoccum_stromaticum_CMW13435 -------------------------------------------------- Neoscytalidium_novaehollandiae_WAC1330 -------------------------------------------------- Neoscytalidium_novaehollandiae_WAC13275 -------------------------------------------------- Neoscytalidium_dimidiatum_WAC13284 -------------------------------------------------- CMM3979 TCAAGAACATGATCACTGGTACCTCCCAGGCCGACTGCGCTATTCTCATC Neoscytalidium_dimidiatum_PD103 -------------------------------------------------- CMM3980 TCAAGAACATGATCACTGGTACCTCCCAGGCCGACTGCGCTATTCTCATC CMM3928 TCAAGAACATGATCACTGGTACCTCCCAGGCCGACTGTGCTATTCTCATC CMM3925 TCAAGAACATGATCACTGGTACCTCCCAGGCCGACTGTGCTATTCTCATC CMM3923 -------------------------------------------------- CMM3905 TCAAGAACATGATCACTGGTACCTCCCAGGCCGACTGTGCTATTCTCATC CMM3937 TCAAGAACATGATCACTGGTACCTCCCAGGCCGACTGTGCTATTCTCATC CMM3940 TCAAGAACATGATCACTGGTACCTCCCAGGCCGACTGTGCTATTCTCATC CMM3938 TCAAGAACATGATCACTGGTACCTCCCAGGCCGACTGTGCTATTCTCATC CMM3899 -------------------------------------------------- Botryosphaeria_dothidea_CAP288 -------------------------------------------------- Botryosphaeria_dothidea_CMW8000 -------------------------------------------------- Botryosphaeria_corticis_CBS119047 -------------------------------------------------- Botryosphaeria_corticis_ATCC_22927 -------------------------------------------------- Botryosphaeria_fabicerciana_CMW24703 -------------------------------------------------- Botryosphaeria_fabicerciana_CMW27094 -------------------------------------------------- Botryosphaeria_scharifii_CBS124703 -------------------------------------------------- Botryosphaeria_scharifii_CBS124702 -------------------------------------------------- Botryosphaeria_ramosum_CBS122069 -------------------------------------------------- Botryosphaeria__mamane_CMW13433 TCAAGAACATGATCACTGGTACCTCCCAGGCCGACTGCGCCATTCTCATC Botryosphaeria__mamane_CMW13429 TCAAGAACATGATCACTGGTACCTCCCAGGCCGACTGCGCCATTCTCATC CMM3941 TCAAGAACATGATCACTGGTACCTCCCAGGCCGACTGCGCCATTCTCATC CMM1390 TCAAGAACATGATCACTGGTACCTCCCAGGCCGACTGCGCCATTCTCATC Botryosphaeria_atrovirens_CMW22674 -------------------------------------------------- Botryosphaeria_atrovirens_CMW22682 -------------------------------------------------- Pseudofusicoccum_stromaticum_CMW13434 -------------------------------------------------- Pseudofusicoccum_stromaticum_CMW13435 -------------------------------------------------- Neoscytalidium_novaehollandiae_WAC1330 ------------------------------ Neoscytalidium_novaehollandiae_WAC13275 ------------------------------ Neoscytalidium_dimidiatum_WAC13284 ------------------------------ CMM3979 ATTGCTGCCGGTA----------------- Neoscytalidium_dimidiatum_PD103 ------------------------------ CMM3980 ATTGCTGCCG-------------------- CMM3928 ATTGCTGCCGGT------------------ CMM3925 ATTGCTGCCGG------------------- CMM3923 ------------------------------ CMM3905 ATTGCTGCCGGT------------------ CMM3937 ATTGCTGCCGGTACTG-------------- CMM3940 ATTGCTGCCGGTACTG-------------- CMM3938 ATTGCTGCCGGTA?---------------- CMM3899 ------------------------------ Botryosphaeria_dothidea_CAP288 ------------------------------ Botryosphaeria_dothidea_CMW8000 ------------------------------ Botryosphaeria_corticis_CBS119047 ------------------------------ Botryosphaeria_corticis_ATCC_22927 ------------------------------ Botryosphaeria_fabicerciana_CMW24703 ------------------------------ Botryosphaeria_fabicerciana_CMW27094 ------------------------------ Botryosphaeria_scharifii_CBS124703 ------------------------------ Botryosphaeria_scharifii_CBS124702 ------------------------------ Botryosphaeria_ramosum_CBS122069 ------------------------------ Botryosphaeria__mamane_CMW13433 ATTGCCGCCGGTACTGGTGAGTTCGAGGCT Botryosphaeria__mamane_CMW13429 ATTGCCGCCGGTACTGGTGAGTTCGAGGCT CMM3941 ATTGCCGCCG-------------------- CMM1390 ATTGCCGC---------------------- Botryosphaeria_atrovirens_CMW22674 ------------------------------ Botryosphaeria_atrovirens_CMW22682 ------------------------------ Pseudofusicoccum_stromaticum_CMW13434 ------------------------------ Pseudofusicoccum_stromaticum_CMW13435 ------------------------------ ; END; BEGIN TREES; Title 'Botryosphaeria "MPhr.tre"'; LINK Taxa = Taxa; TRANSLATE 1 Neoscytalidium_novaehollandiae_WAC1330, 2 Neoscytalidium_novaehollandiae_WAC13275, 3 Neoscytalidium_dimidiatum_WAC13284, 4 CMM3979, 5 Neoscytalidium_dimidiatum_PD103, 6 CMM3980, 7 CMM3928, 8 CMM3925, 9 CMM3923, 10 CMM3905, 11 CMM3937, 12 CMM3940, 13 CMM3938, 14 CMM3899, 15 Botryosphaeria_dothidea_CAP288, 16 Botryosphaeria_dothidea_CMW8000, 17 Botryosphaeria_corticis_CBS119047, 18 Botryosphaeria_corticis_ATCC_22927, 19 Botryosphaeria_fabicerciana_CMW24703, 20 Botryosphaeria_fabicerciana_CMW27094, 21 Botryosphaeria_scharifii_CBS124703, 22 Botryosphaeria_scharifii_CBS124702, 23 Botryosphaeria_ramosum_CBS122069, 24 Botryosphaeria__mamane_CMW13433, 25 Botryosphaeria__mamane_CMW13429, 26 CMM3941, 27 CMM1390, 28 Botryosphaeria_atrovirens_CMW22674, 29 Botryosphaeria_atrovirens_CMW22682, 30 Pseudofusicoccum_stromaticum_CMW13434, 31 Pseudofusicoccum_stromaticum_CMW13435; TREE PAUP_1 = ((((1:5.0,2:5.0):46.0,(((3:0.0,4:0.0):2.0,6:0.0):1.0,5:1.0):46.0):126.0,(((((((7:0.0,8:0.0):1.0,9:1.0,10:0.0,14:0.0,(19:0.0,20:0.0):1.0):3.0,(17:1.0,18:0.0):16.0):4.0,11:0.0,12:0.0,13:0.0):2.0,(15:1.0,16:0.0):4.0):3.0,((21:1.0,22:0.0):4.0,23:7.0):10.0):28.0,(((24:5.0,(28:4.0,29:5.0):37.0):3.0,25:0.0):1.0,26:0.0,27:0.0):40.0):150.0):0.0,30:0.0,31:0.0); TREE PAUP_2 = ((((1:5.0,2:5.0):46.0,(((3:0.0,4:0.0):2.0,6:0.0):1.0,5:1.0):46.0):126.0,(((((((7:0.0,8:0.0):1.0,9:1.0,10:0.0,14:0.0,(19:0.0,20:0.0):1.0):3.0,(17:1.0,18:0.0):16.0):4.0,(11:0.0,12:0.0,13:0.0):0.0):2.0,(15:1.0,16:0.0):4.0):3.0,((21:1.0,22:0.0):4.0,23:7.0):10.0):28.0,(((24:5.0,(28:4.0,29:5.0):37.0):3.0,25:0.0):1.0,26:0.0,27:0.0):40.0):150.0):0.0,30:0.0,31:0.0); TREE PAUP_3 = ((((1:5.0,2:5.0):46.0,(((3:0.0,4:0.0):2.0,6:0.0):1.0,5:1.0):46.0):126.0,(((((((7:0.0,8:0.0):1.0,9:1.0,10:0.0,14:0.0,(19:0.0,20:0.0):1.0):3.0,(17:1.0,18:0.0):16.0):4.0,11:0.0,12:0.0,13:0.0):2.0,(15:1.0,16:0.0):4.0):3.0,((21:1.0,22:0.0):4.0,23:7.0):10.0):28.0,((24:7.0,25:0.0,(28:5.0,29:4.0):38.0):1.0,26:0.0,27:0.0):40.0):150.0):0.0,30:0.0,31:0.0); TREE PAUP_4 = ((((1:5.0,2:5.0):46.0,(((3:0.0,4:0.0):2.0,6:0.0):1.0,5:1.0):46.0):126.0,(((((((7:0.0,8:0.0):1.0,9:1.0,10:0.0,14:0.0,(19:0.0,20:0.0):1.0):3.0,(17:1.0,18:0.0):16.0):4.0,11:0.0,12:0.0,13:0.0):2.0,(15:1.0,16:0.0):4.0):3.0,((21:1.0,22:0.0):4.0,23:7.0):10.0):28.0,((24:7.0,(25:0.0,(28:5.0,29:4.0):38.0):0.0):1.0,26:0.0,27:0.0):40.0):150.0):0.0,30:0.0,31:0.0); TREE PAUP_5 = ((((1:5.0,2:5.0):0.0,((3:0.0,4:0.0):2.0,6:0.0):1.0,5:1.0):172.0,(((((((7:0.0,8:0.0):1.0,9:1.0,10:0.0,14:0.0,(19:0.0,20:0.0):1.0):3.0,(17:1.0,18:0.0):16.0):4.0,11:0.0,12:0.0,13:0.0):2.0,(15:1.0,16:0.0):4.0):3.0,((21:1.0,22:0.0):4.0,23:7.0):10.0):28.0,(((24:5.0,(28:4.0,29:5.0):37.0):3.0,25:0.0):1.0,26:0.0,27:0.0):40.0):150.0):0.0,30:0.0,31:0.0); TREE PAUP_6 = ((((1:5.0,2:5.0):46.0,(((3:0.0,4:0.0):2.0,6:0.0):1.0,5:1.0):46.0):126.0,(((((((7:0.0,8:0.0):1.0,9:1.0,10:0.0,14:0.0,(19:0.0,20:0.0):1.0):3.0,(17:1.0,18:0.0):16.0):4.0,11:0.0,12:0.0,13:0.0):2.0,(15:1.0,16:0.0):4.0):3.0,((21:1.0,22:0.0):4.0,23:7.0):10.0):28.0,(24:7.0,(25:0.0,(28:5.0,29:4.0):38.0):1.0,26:0.0,27:0.0):40.0):150.0):0.0,30:0.0,31:0.0); TREE PAUP_7 = ((((1:5.0,2:5.0):46.0,(((3:0.0,4:0.0):2.0,6:0.0):1.0,5:1.0):46.0):126.0,(((((((7:0.0,8:0.0):1.0,9:1.0,10:0.0,14:0.0,(19:0.0,20:0.0):1.0):3.0,(17:1.0,18:0.0):16.0):4.0,(11:0.0,12:0.0,13:0.0):0.0):2.0,(15:1.0,16:0.0):4.0):3.0,((21:1.0,22:0.0):4.0,23:7.0):10.0):28.0,((24:7.0,25:0.0,(28:5.0,29:4.0):38.0):1.0,26:0.0,27:0.0):40.0):150.0):0.0,30:0.0,31:0.0); TREE PAUP_8 = ((((1:5.0,2:5.0):46.0,(((3:0.0,4:0.0):2.0,6:0.0):1.0,5:1.0):46.0):126.0,(((((((7:0.0,8:0.0):1.0,9:1.0,10:0.0,14:0.0,(19:0.0,20:0.0):1.0):3.0,(17:1.0,18:0.0):16.0):4.0,(11:0.0,12:0.0,13:0.0):0.0):2.0,(15:1.0,16:0.0):4.0):3.0,((21:1.0,22:0.0):4.0,23:7.0):10.0):28.0,((24:7.0,(25:0.0,(28:5.0,29:4.0):38.0):0.0):1.0,26:0.0,27:0.0):40.0):150.0):0.0,30:0.0,31:0.0); TREE PAUP_9 = ((((1:5.0,2:5.0):0.0,((3:0.0,4:0.0):2.0,6:0.0):1.0,5:1.0):172.0,(((((((7:0.0,8:0.0):1.0,9:1.0,10:0.0,14:0.0,(19:0.0,20:0.0):1.0):3.0,(17:1.0,18:0.0):16.0):4.0,(11:0.0,12:0.0,13:0.0):0.0):2.0,(15:1.0,16:0.0):4.0):3.0,((21:1.0,22:0.0):4.0,23:7.0):10.0):28.0,(((24:5.0,(28:4.0,29:5.0):37.0):3.0,25:0.0):1.0,26:0.0,27:0.0):40.0):150.0):0.0,30:0.0,31:0.0); TREE PAUP_10 = ((((1:5.0,2:5.0):46.0,(((3:0.0,4:0.0):2.0,6:0.0):1.0,5:1.0):46.0):126.0,(((((((7:0.0,8:0.0):1.0,9:1.0,10:0.0,14:0.0,(19:0.0,20:0.0):1.0):3.0,(17:1.0,18:0.0):16.0):4.0,(11:0.0,12:0.0,13:0.0):0.0):2.0,(15:1.0,16:0.0):4.0):3.0,((21:1.0,22:0.0):4.0,23:7.0):10.0):28.0,(24:7.0,(25:0.0,(28:5.0,29:4.0):38.0):1.0,26:0.0,27:0.0):40.0):150.0):0.0,30:0.0,31:0.0); TREE PAUP_11 = ((((1:5.0,2:5.0):0.0,((3:0.0,4:0.0):2.0,6:0.0):1.0,5:1.0):172.0,(((((((7:0.0,8:0.0):1.0,9:1.0,10:0.0,14:0.0,(19:0.0,20:0.0):1.0):3.0,(17:1.0,18:0.0):16.0):4.0,11:0.0,12:0.0,13:0.0):2.0,(15:1.0,16:0.0):4.0):3.0,((21:1.0,22:0.0):4.0,23:7.0):10.0):28.0,((24:7.0,(25:0.0,(28:5.0,29:4.0):38.0):0.0):1.0,26:0.0,27:0.0):40.0):150.0):0.0,30:0.0,31:0.0); TREE PAUP_12 = ((((1:5.0,2:5.0):0.0,((3:0.0,4:0.0):2.0,6:0.0):1.0,5:1.0):172.0,(((((((7:0.0,8:0.0):1.0,9:1.0,10:0.0,14:0.0,(19:0.0,20:0.0):1.0):3.0,(17:1.0,18:0.0):16.0):4.0,11:0.0,12:0.0,13:0.0):2.0,(15:1.0,16:0.0):4.0):3.0,((21:1.0,22:0.0):4.0,23:7.0):10.0):28.0,((24:7.0,25:0.0,(28:5.0,29:4.0):38.0):1.0,26:0.0,27:0.0):40.0):150.0):0.0,30:0.0,31:0.0); TREE PAUP_13 = ((((1:5.0,2:5.0):0.0,((3:0.0,4:0.0):2.0,6:0.0):1.0,5:1.0):172.0,(((((((7:0.0,8:0.0):1.0,9:1.0,10:0.0,14:0.0,(19:0.0,20:0.0):1.0):3.0,(17:1.0,18:0.0):16.0):4.0,11:0.0,12:0.0,13:0.0):2.0,(15:1.0,16:0.0):4.0):3.0,((21:1.0,22:0.0):4.0,23:7.0):10.0):28.0,(24:7.0,(25:0.0,(28:5.0,29:4.0):38.0):1.0,26:0.0,27:0.0):40.0):150.0):0.0,30:0.0,31:0.0); TREE PAUP_14 = ((((1:5.0,2:5.0):0.0,((3:0.0,4:0.0):2.0,6:0.0):1.0,5:1.0):172.0,(((((((7:0.0,8:0.0):1.0,9:1.0,10:0.0,14:0.0,(19:0.0,20:0.0):1.0):3.0,(17:1.0,18:0.0):16.0):4.0,(11:0.0,12:0.0,13:0.0):0.0):2.0,(15:1.0,16:0.0):4.0):3.0,((21:1.0,22:0.0):4.0,23:7.0):10.0):28.0,((24:7.0,25:0.0,(28:5.0,29:4.0):38.0):1.0,26:0.0,27:0.0):40.0):150.0):0.0,30:0.0,31:0.0); TREE PAUP_15 = ((((1:5.0,2:5.0):0.0,((3:0.0,4:0.0):2.0,6:0.0):1.0,5:1.0):172.0,(((((((7:0.0,8:0.0):1.0,9:1.0,10:0.0,14:0.0,(19:0.0,20:0.0):1.0):3.0,(17:1.0,18:0.0):16.0):4.0,(11:0.0,12:0.0,13:0.0):0.0):2.0,(15:1.0,16:0.0):4.0):3.0,((21:1.0,22:0.0):4.0,23:7.0):10.0):28.0,((24:7.0,(25:0.0,(28:5.0,29:4.0):38.0):0.0):1.0,26:0.0,27:0.0):40.0):150.0):0.0,30:0.0,31:0.0); TREE PAUP_16 = ((((1:5.0,2:5.0):0.0,((3:0.0,4:0.0):2.0,6:0.0):1.0,5:1.0):172.0,(((((((7:0.0,8:0.0):1.0,9:1.0,10:0.0,14:0.0,(19:0.0,20:0.0):1.0):3.0,(17:1.0,18:0.0):16.0):4.0,(11:0.0,12:0.0,13:0.0):0.0):2.0,(15:1.0,16:0.0):4.0):3.0,((21:1.0,22:0.0):4.0,23:7.0):10.0):28.0,(24:7.0,(25:0.0,(28:5.0,29:4.0):38.0):1.0,26:0.0,27:0.0):40.0):150.0):0.0,30:0.0,31:0.0); END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 1180; END; begin mrbayes; log start filename = Bayes.log replace; lset nst = 6 rates = gamma; set autoclose = yes; exclude 1 -28 545 -650 962 -1180; outgroup stromaticum_CMW13435; mcmcp ngen = 1000000 printfreq = 1000 samplefreq = 100 nchains = 4 savebrlens = yes filename = Bayes; mcmc; plot filename = Bayes.p; sumt filename = Bayes.t burnin = 2000 contype = halfcompat; log stop; END; BEGIN TREES; Title 'Trees from "Bayes.tree"'; LINK Taxa = Taxa; TRANSLATE 1 Neoscytalidium_novaehollandiae_WAC1330, 2 Neoscytalidium_novaehollandiae_WAC13275, 3 Neoscytalidium_dimidiatum_WAC13284, 4 CMM3979, 5 Neoscytalidium_dimidiatum_PD103, 6 CMM3980, 7 CMM3928, 8 CMM3925, 9 CMM3923, 10 CMM3905, 11 CMM3937, 12 CMM3940, 13 CMM3938, 14 CMM3899, 15 Botryosphaeria_dothidea_CAP288, 16 Botryosphaeria_dothidea_CMW8000, 17 Botryosphaeria_corticis_CBS119047, 18 Botryosphaeria_corticis_ATCC_22927, 19 Botryosphaeria_fabicerciana_CMW24703, 20 Botryosphaeria_fabicerciana_CMW27094, 21 Botryosphaeria_scharifii_CBS124703, 22 Botryosphaeria_scharifii_CBS124702, 23 Botryosphaeria_ramosum_CBS122069, 24 Botryosphaeria__mamane_CMW13433, 25 Botryosphaeria__mamane_CMW13429, 26 CMM3941, 27 CMM1390, 28 Botryosphaeria_atrovirens_CMW22674, 29 Botryosphaeria_atrovirens_CMW22682, 30 Pseudofusicoccum_stromaticum_CMW13434, 31 Pseudofusicoccum_stromaticum_CMW13435; TREE con_50_majrule = (31:0.001351,30:0.001367,((5:0.001409,(1:0.00139,2:0.001399)1.00:0.008223,(6:0.001361,(3:0.001416,4:0.001336)1.00:0.004122)0.97:0.002739)1.00:0.054888,(((17:0.002686,18:0.001358)1.00:0.01443,((23:0.009747,(21:0.001376,22:0.001257)0.99:0.004012)1.00:0.012803,(11:0.001331,12:0.00131,13:0.001349,(15:0.002708,16:0.001367)1.00:0.005476)0.89:0.002713)0.92:0.005169,(9:0.002552,10:0.00131,14:0.001334,(19:0.001349,20:0.001338)0.99:0.002665,(7:0.001362,8:0.001403)0.99:0.002724)0.83:0.005082)1.00:0.031126,(24:0.009765,26:0.00145,27:0.001423,(25:0.00156,(28:0.005182,29:0.007702)1.00:0.042047)0.71:0.002735)1.00:0.049203)0.51:0.020151)1.00:0.211069); TREE con_50_majrule = (31:0.001351,30:0.001367,((5:0.001409,(1:0.00139,2:0.001399):0.008223,(6:0.001361,(3:0.001416,4:0.001336):0.004122):0.002739):0.054888,(((17:0.002686,18:0.001358):0.01443,((23:0.009747,(21:0.001376,22:0.001257):0.004012):0.012803,(11:0.001331,12:0.00131,13:0.001349,(15:0.002708,16:0.001367):0.005476):0.002713):0.005169,(9:0.002552,10:0.00131,14:0.001334,(19:0.001349,20:0.001338):0.002665,(7:0.001362,8:0.001403):0.002724):0.005082):0.031126,(24:0.009765,26:0.00145,27:0.001423,(25:0.00156,(28:0.005182,29:0.007702):0.042047):0.002735):0.049203):0.020151):0.211069); END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 1180; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 1180; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1344335295373; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 2942466676442196491; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 7154161700477372268; mqVersion 274; checksumv 0 2 3294825953 null getNumChars 1180 numChars 1180 getNumTaxa 31 numTaxa 31 short true bits 15 states 15 sumSquaresStatesOnly 589632.0 sumSquares 589632.0 NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1280 906; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #2942466676442196491 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #2942466676442196491; getWindow; tell It; newAssistant #mesquite.lists.DefaultTaxaOrder.DefaultTaxaOrder; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; getTable; tell It; rowNamesWidth 245; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1180 839; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.ibeam; endTell; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #2942466676442196491 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 2; toggleUseWeights off; endTell; setAssignedID 822.1344274917848.5388609266321309915; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1180 839; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 6; orientRight; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; makeTreeWindow #2942466676442196491 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 852.1344274919736.4226912854743290441; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1180 839; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 6; orientRight; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #7154161700477372268 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1180 839; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;