NEXUS
[File created by TreeBASE:  7/26/07  21:07:39]
[Matrix accession#: M2196]

BEGIN TAXA;
	TITLE M2196;
	DIMENSIONS  NTAX=11;
	TAXLABELS
		Anhinga_rufa	Anhinga_novaehollandiae	Anhinga_anhinga	Phalacrocorax_melanoleucos	Phalacrocorax_varius	Phalacrocorax_carbo	Sula_dactylatra	Sula_sula	Morus_serrator	Pelecanus_conspicillatus	Pelecanus_occidentalis
	;
END;

BEGIN CHARACTERS;
	TITLE M2196;
	DIMENSIONS NCHAR=1141;
	FORMAT DATATYPE = DNA MISSING = ? GAP = - ;
	MATRIX
		Anhinga_rufa                     TTAACCCTCCTGATAACATGATTGACCTTCTCCCTACTAATCCAGCCAAAGCTCCTATCATTCACCCCTACCAACCCCCCATCCAATAAAACACCCACAACCAACAAAACTATTCCCTGAACCTGA?CATGAACTTAAGCTTCTYTGACCAATTTACAAGCCCCTGCCTCATAKGAATTCCCCTAATCCTGCTCTCAACTCTATTCCCCGCCCTACTATTCCCCACCCCCAATAACCGATGACTCACCAACCGACTTACCACCCTCCAATCATGACTTCTCCACCTCATCACTAAGCAACTAATAATCCCACTAGACAAGAAAGGCCATAAATGAGCCCTAATCCTAGCATCACTAATAGTCCTACTACTCACAATCAACCTGCTAGGCCTACTTCCATACACATTTACCCCCACTACCCAACTGTCAATAAACATGGCATTAGCCTTCCCACTCTGACTTGCCACGCTCCTCATCGGCCTACGAAACCAACCATCAATCTCCCTAGGACATCTACTACCTGAAGGAACCCCAACGCCACTAATTCCCGCACTAATCATAATCGAAACTACCAGCCTAYTCATCCGCCCACTAGCCCTAGGTGTTCGCCTCACAGCAAACCTCACAGCAGGCCACCTACTCATCCAACTAATYT?TACAGCCACAACCGCCCTAYTTCCCACCATACCAGCAGTGTCAATCCTAACCCTACTAGTCCTATTCCTACTAACCATCTTAGAAGTAGCTGTGGCCATAATCGCCTAGCCCTAAATCTAGATACTTACCCCACCAAAGTATCCGCCCGAGAACTACGAGCACAAACGCTTAAAACTCTAAGGACTTGGCGGTGCCCCAAACCCACCTAGAGGAGCCTGTTCTATAATCGATAACCCACGATAGACCCAACCTCCCCTTGCCAAAACAGCCTACATACCGCCGTCGTCAGCTCACCTCTGAGAGCACAACAGTGAGCACAACAGCCCGCTAGCAAGACAGGTCAAGGTATAGCTCATGGGGTGGAAGAAATGGGCTACATTTTCTACTATAGAAAACCGGAAA-GGAGTCTGCAAGACCCCTGGAAGGCGGATTTAGCAGTAAAGAAGGACAATAAAGCCCTCTTTAAACAGGCCCTGGGGCACGT
		Anhinga_novaehollandiae          ???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????TAATCCTGATCTCAACACTATTCCCCACCCTACTATTCCCCACACCCAACAACCGATGACTTACCAATCGACTTACTACTCTCCAATCATGGCTTCTTCACCTGATCACCAAGCAACTAATACTTCCCCTAGATAAGAAAGGCCACAAATGGGCCCTAATCCTAACATCACTAATAACTCTACTACTGATAATCAATCTGCTGGGTCTACTTCCCTACACATTCACCCCCACCACCCAACTATCAATAAACATAGCGTTAGCCTTCCCACTCTGATTCGCCACACTCCTTATCGGCCTACGGAACCAGCCATCAATTTCTCTAGGTCATCTATTACCAGAAGGCACCCCAACACTACTAATTCCTGCCCTAATCATAATCGAAACCACCAGCCTACTCATCCGCCCATTAGCCCTAGGCGTCCGCCTCACAGCAAACCTTACAGCAGGCCACTTACTCATCCAACTAATCTCCACAGCCACAACCGCTCTACTCCCAACCATACCAACAGTATCAATCCTAACCATACTAATTCTATTCCTACTAACCATCCTAGAACTAGCCGTAGCCATAATTGCCTAGCCCTAAATCTTGATGCCTACCCTACCTAAGCATCCGCCCGAGAACTACGAGCACAAACGCTTAAAACTCTAAGGACTTGGCGGTGTCCCAAACCCACCTAGAGGAGCCTGTTCTATAATCGATAACCCACGATACACCCAACCACCCCTTGCYAAAACAGCCTACATACCGCCGTCGTCAGCTCACCTCTGAGRGCATAACAGTGAGCACAATAGCCCGCTAACAAGACAGGTCAAGGTATAGCTCATGGGATGGAAGAAATGGGCTACATTTTCTACTATAGAAAACCGGAAA-GAGGCCTGCAAGGCCTCTGGAAGGCGGATTTAGCAGTAAAGAGGGATAATAAAGCCCTCTTTAAATAGGCCCTGGGGCACGT
		Anhinga_anhinga                  ??????????????????????????????????????????????CTAAACTCCTATCACTCATCCTTACTAACCCCCCTCCCAATMAAGACCGCATAACTG??????????????TGAGCCTGACCATGAACCAAAGCTTCTTTGACCAATTCACAAGTCTATGCCT?CTAGGAATCCCTCTAATCCTTCTCTCAATACTATTCCCCACCCTATTGTTCCCTCCTTTCAGCACCCGATGACTCACTAACCGACTTACTACCCTCCAGTCATGACTTCTCCACCTAATCACCAAACAACTAATAATCCCATTAAACAAAAAAGGCCACAAATGAGCCCTAGTCATAACATCCCTAATGATCTTACTACTCTCAATTAACCTACTAGGCCTACTCCCCTATACTTTCACCCCCACTACCCAACTGTCAATAAATATAGCACTAGCCTTCCCATTATGACTTGCCACCCTCCTTACAGGCCTACGAAATCAACCATCAACCTCCCTAGGACACCTACTGCCTGAAGGAACCCCAACCCCATTAATCCCCGCCCTAATCATAATCGAAACTACCAGCCTACTAATTCGTCCATTAGCCCTAGGCGTCCGTCTTACAGCAAACCTTACAGCGGGCCACCTACTCATCCAACTAATCTCCACAGCTACAATCACCCTACTGCCCATCATACCAGCAGTATCAATCTTAACCTTATTAATCTTGTTCCTACTTACTATCCTAGAAGTAGCTGTAGCCATAATCGCCTAGCCCTAAATCCTGATACTTACCCCACTAAAGTATCCGCCCGAGAACTACGAGCATAAACGCTTAAAACTCTAAGGACTTGGCGGTGCCCCAGATCCCCCTAGAGGAGCCTGTCCTATAATCGATAACCCACGATATACCCGACCTCCCCTTGCCAAAACAGCCTACATACCGCCGTCTCCAGTTCACCTCTGAGAGAGCAACAGTGAGCACAATAGCTCGCTAACAAGACAGGTCAAGGTATAGCTTATGAGGAGGAAGAGATGGGCTACATTTTCTACAATAGAAAATACGAAAGGGGGCTTGCAATTCCCCCAGAAGGAGGATTTAGTAGTAAAGAGAGATAATAGAGCCCTCTTTAAACCGGCCCTGAGGCACGT
		Phalacrocorax_melanoleucos       ???????????????????????AACATTCCTACTCTTAATTCAACCAAAACTCCTATCATTCACATCCACCAACACACCCTCCAACAAAACCATAACATCCACCAACACTAACCCATGAACCTGACCATGAACCTAAGCTTCTTCGACCAATTTACAAGCCCGTGCCTCCTAGGAGTGCCCCTAATCCTACTCTCCATACTACTCCCTGCCCTACTACTCCCTTCACCAAATAACCGTTGAATTACCAACCGACTTTCCACTCTCCAATCATGACTCCTCCACCTTATCACAAAACAACTAATAATGCCCCTAAACAAAAAGGGACATAAATGAGCCCTAATCCTAACATCACTAATAGCCCTCCTACTTATAACTAATCTACTTGGCCTACTCCCATACACCTTCACCCCAACTACCCAACTATCAATAAATATAGCACTAGCATTCCCACTCTGACTCGCAACATTACTTACAGGCCTACGAAATCAACCAACTGCGTCACTAGGCCACCTACTCCCCGAAGGAACTCCCACCCCGCTAATCCCAGCCCTAATCATAATCGAAACAACTAGCCTACTCATCCGTCCCATTGCGCTAGGTGTCCGACTCACAGCAAACCTCACAGCAGGCCACCTCCTTATCCAACTAATCTCCACAGCCACAATCGCACTCCTTCCTATCATACCAACAATYTCAATCTTAACCGCACTAATCTTACTACTACTGACACTCCTAGAAGTAGCAGTCGCCATAATCGCCTAGCCATAAATCTTGGCACTTCCCCTACCAAAGTGCCCGCCCGAGAACTACGAGCACAAACGCTTAAAACTCTAAGGACTTGGCGGTGCCCCAAACCCACCTAGAGGAGCCTGTTCTATAATCGATAACCCACGATCCACCCGACCACCCCTTGCCAAAACAGCCTACATACCGCCGTCGTCAGTCCACCTTTGAGAGGGTAACAGTGAACACAATAGCCCGCTAACAAGACAGGTCAAGGTATAGCCTATGGGGTGGAAGAAATGGGCTACATTTTCTGGAGCAGAAAACACGAAAGGGGATGTGAAACATCCCCTAAAGGCGGATTTAGCAGTAAAGCGGGACAATAGAGCCCCCTTTAAACCGGCCCTGAGGCACGT
		Phalacrocorax_varius             TTCATCCTACTAACCTCATGACTAACATTTTCACTCTTAATCCAACCAAAACTCCTATCATTCACCACCACTAACCCACCCTCCAACAAAACCATAACAACCACCAAAAACAACCCATGAACCTGACCATGAACTTAAGCTTCTTCGACCAATTCACAAGCCCATACTTCCTAGGCATTCCTCTAATCCTACTCTCTATACTACTCCCCGCCCTACTACTACCTACACCAGATAACCGATGAGTCACCAACCGACTCTCTACCCTACAATCGTGACTACTTCATCTCATCACAAAACAACTAATAATGCCCCTAAACAAAAAGGGGSATAAATGGGCCCTAATTCTAACATCATTAATAGCCCTCCTACTCATAACCAACCTGCTAGGCCTACTCCCCTACACCTTCACCCCAACTACCCAACTATCAATAAACATAGCACTAGCATTTCCACTCTGACTTGCAACCTTACTTACAGGTCTACGAAACCAACCAACTATCTCACTAGGACATCTCCTGCCTGAAGGAACTCCCACTCCCCTAATCCCAGCCGTAATTATAATCGAAACTACTAGCCTACTTATCCGCCCCCTTGCACTAGGCGTCCGACTCACAGCAAACGTCACAGCAGGCCACCTCCTCATCCAACTAATCTCCACAGCCACAACTGTACTCCTCCCCATCATACCAACAATCTCAATCCTAAGTACACTGATCCTCCTACTACTAACAATCCTAGAAGTAGCAGTAGCCATAATCGCCTAGCCCTAAATCTTGGCACTTCCCCTACTAAAGTGTCCGCCCGAGAACTACGAGCACAAACGCTTAAAACTCTAAGGACTTGGCGGTGCCCCAAACCCACCTAGAGGAGCCTGTTCTATAATCGATAACCCACGATTCACCCGACCACCCCTTGCCAAAACAGCCTACATACCGCCGTCGTCAGCCCACCTTTGAAAGAACAACAGTGGGCGCAATAGCCCGCTAACAAGACAGGTCAAGGTATAGCTCATGGGGCGGAAGAAATGGGCTACATTTTCTGAAACAGAAAACACGAAAGAGGACGTGAAACGTCCCCGAAAGGCGGATTTAGCAGTAAAGCGGGACAATAGAGCCCCCTTTAAACAGGCCCTGAGGCACGT
		Phalacrocorax_carbo              TTCATCCTACTAGCCTCATGACTAACATTCTCATTCTTAATCCAACCAAAACTCCTATCATTCACTACCACCAACCCACCCTCCAACAAAACCATAACAATCACCAAAAACAACCCATGAACCTGACCATGAACCTAAGCTTCTTCGACCAATTCACAAGCCCATAYCTCCTAGGCATTCCCCTAATYCTACTCTCTATACTACTCCCCGCCCTACTACTCCCCTCACCAGACAACCGATGAGTTACCAACCGATTCTCTACCCTACAATCATGACTACTCCACCTCATCACAAAACAACTAATAATGCCCCTAAACAAAAAGGGGCATAAATGAGCCCTAATCCTGACATCATTAATAGCTCTCCTACTCATAACCAACCTACTAGGCTTACTCCCCTATACCTTCACCCCAACTACCCAACTATCAATAAACATAGCACTAGCATTCCCACTATGACTTGCAACTTTACTTACAGGCCTACGAAACCAACCAACCATCTCACTAGGACACCTCCTGCCCGAAGGGACCCCCACCCCCCTAATCCCGGCCCTAATTATAATCGAAACTACCAGCCTACTTATCCGCCCCCTTGCACTTGGCGTCCGACTCACAGCAAACCTCACAGCAGGCCACCTCCTCATCCAACTAATCTCCACAGCTACAACCGTACTCCTCCCCATCATGCCAACAGTCTCAATCCTAACTACATTAATCCTACTACTATTGACAATCCTGGAGGTAGCAGKAGCCATAATCGCCTAGCCCTAAATCTTGGCACTTCCCCTACTAAAGTGCCCGCCCGAGAACTACGAGCGCAAACGCTTAAAACTCTAAGGACTTGGCGGTGCCCCAAACCCACCTAGAGGAGCCTGTTCTATAATCGATAACCCACGATTCACCCGACCGCCCCTTGCCAAAACAGCCTACATACCGCCGTCGTCAGCCCACCTTTGAAAGAACAACAGTGAGCGCAATAGCCCGCTAATAAGACAGGTCAAGGTATAGCTCATGGAGCGGAAGAAATGGGCTACATTTTCTGAAACAGAAAACACGAAAGGGGACGTGAAACGTCCCCGAAAGGCGGATTTAGCAGTAAAGCGGGACAATAGAGCCCCCTTTAAACCGGCCCTGAGGCACGT
		Sula_dactylatra                  CTTATCCTAACTTTATCATGACTTACCCTCTCACTTGTAATCCAGCCCAAGCTTCTATCATTTATATCCACCAACCCTCCTTCTAACAAAACCTCCACAACCACCAAAACCACTTCCTGAACCTGACCATGAACTTAAGTTTTTTCGACCAATTCGCAAGTCCGTGCTTTCTAGGAATCCCCCTAATCCTAATCTCAATACTATTCCCCGCCCTATTGCTCCCCACACCAAACAACCGATGAATCACCAACCGACTCTTTACCCTCCAATCATGATTCCTCCATCTCATTACTAAACAACTAATAATCCCCTTAAACAAAAACGGACATAAATGAGCCTTAATCCTAACATCATTAATAACTATACTACTAACAATCAACCTACTAGGGCTACTTCCTTACACATTCACCCCTACCACTCAACTATCAATAAACATAGCACTAGCATTCCCCCTCTGACTTGCCACTCTACTTACAGGCCTACGAAACCAACCATCAACATCCCTAGGACACCTACTTCCTGAAGGCACTCCAACACCACTAGTCCCAGCCCTAATCCTAATTGAAACTACTAGCCTCCTCATTCGACCACTAGCTCTAGGCGTCCGCCTCACAGCTAACCTCACAGCAGGTCACCTGCTCATCCAACTAATCTCCACAGCYTCTGCTACCCTGCTCCCAGTCATACCAACCGTATCCATCCTAACCACTCTAATCCTACTCCTACTGACCATTCTGGAAGTAGCAGTAGCTATAATTGCCTAGCCCTAAATCTTGACACTTACACTACTAAAGTGTCCGCCCGAGAACTACGAGCACAAACGCTTAAAACTCTAAGGACTTGGCGGTGTCCCAAACCCACCTAGAGGAGCCTGTTCTATAATCGATAACCCACGATACACCCAACCGCCCCTTGCCAAAGCAGCCTACATACCGCCGTCGTCAGCCCACCTCTGAAAGAATAACAGTGGGCACAATAGTCCACTAACAAGACAGGTCAAGGTATAGCTTATGGGGCGGAAGAAATGGGCTACATTTTCTAAGTTAGAAAACACGGAAAGGGGCGCGCAACCCCCCTAGAAGGCGGATTTAGCAGTAAAGTGAGACCATAAAGCCCTCTTTAAACYGGCYCTGGGAYACGT
		Sula_sula                        ?TCATCCTAACCCTATCATGACTAACMTTCTCACTTATAATCCARYCTAAACTTCTATCATTTTTATCCATTAACTCCCCCTCCAACAAAATCACCACAACTACCAAAACCACTTCCTGAACCTGACCATGAACCTAAGCTTCTTTGATCAATTCGCAAGCCCATGCTTCCTAGGAATTCCACTAATCCTAATCTCAATACTATTCCCCGCCCTACTATTCCCCACACCAGACAACCGATGAATCACCAACCGACTCTCTACCCTCCAATCATGATTCCTCTATCTCATCACTAAACAGCTACTAATCCCCCTAAACAAAAACGGACACAAATGAGCCTTAATCCTAACATCACTAATAACCATACTACTAACAATTAACCTTCTAGGACTACTCCCTTACACATTTACTCCTACCACCCAACTATCAATAAATATAGCACTAGCATTTCCCCTCTGACTCGCCACACTACTCACAGGCCTACGAAATCAACCATCAACCTCCCTAGGACATCTACTCCCTGAAGGCACTCCAACACCACTAATCCCAGCCCTAATTYTAATTGAAACCACTAGCCTCCTCATCCGACCACTAGCCCTAGGCGTCCGCCTTACAGCTAACCTCACAGCAGGTCACCTACTCATCCAACTAATCTCCACAGCCTCTGCTACCCTGCTCCCAATCGTCCCAACCGTATCCATCTTAACCACACTAATCCTGCTCTTACTGACTATTCTAGAAGTAGCAGTAGCCATAATTGCCTAGCCCTAAATCTTGGCACTTACACTACTAAAGTGCCCGCCCGAGAACTACGAGCACAAACGCTTAAAACTCTAAGGACTTGGCGGTGTCCCAAACCCACCTAGAGGAGCCTGTTCTATAATCGATAACCCACGATACACCCAACCGTCCCTTGCCAGAGCAGCCTACATACCGCCGTCGTCAGCTCACCTCTGAAAGAGCAACAGTGAGCATAATAGTTCACTAGTAAGACAGGTCAAGGTATAGCTTATGGGRCGGAAGAAATGGGCTACATTTTCTAAACTAGAAGACACGGAAAGGGGTGTGCAACCCCCCTAGAAGGCGGATTTAGTAGTAAAGCGGGACCATAGAGCCCCCTTTAAACCGGCCCTGGGATACGT
		Morus_serrator                   CTCATCTTATTAATATCATGACTAACATTCGCTCTTATAATCCAACCTAAACTTCTACCATTCAYCRCCACCAACTCCCCCTCCAACAAAACTCCTTCACCCACTAAAACCACCCCTTGAAYCTGACCATGAACTTAAGCTTCTTTGACCAATTCACAAGCCCATGCTTMCTAGGAATTCCACTAATCTTACTCTCAATACTATTTCCTACCCTACTACTYCCCACGCCAAGCAACCGATGAATCACTAATCGACTCTCTACTCTCCAATCATGATTCTTTCACCTCATCACAAAACAACTAATAATCCCTCTAAACAAAAAAGGCCACAAATGAGCCCTAATCCTAACATCACTAATAATTATACTACTAATAATCAATCTACTAGGCCTTCTCCCCTACACATTTACCCCTACCACCCAACTATCAATAAACATAGCACTAGCATTCCCGCTCTGACTAGCCACACTGCTCACAGGCCTGCGAAACCAACCATCAATCTCCCTAGGACATCTACTACCTGAAGGTACTCCAACACCACTAATCCCAGCCCTAATTATAATCGAAACTACTAGCCTTCTCATCCGACCATTAGCCCTAGCTGTACGCCTCACAGCAAACCTTACAGCAGGTCACTTGCTCATCCAACTAATTTCCACAGCCTCCATTGCCCTCCTTCCAATCATACCAACAGTATCTATCCTAACCACAYTAATCCTWCTYTTATTAACCATCCTGGAAGTGGCAGTAGCAATAATCGCCTAGCCTTAAATCTTGGCACTTACCATACTAAAGTACCCGCCTGAGAACTACGAGCACAAACGCTTAAAACTCTAAGGACTTGGCGGTGCTCTAAACCCACCTAGAGGAGCCTGTTCTATAATCGATAATCCACGATGCACCCGACCACCCCTTGCCAGTACAGCCTACATACCGCCGTCGTCAGCTCACCTCTGAGAGTGTAGTAGTGAGCACAATAGCCCGCTAGTAAGACAGGTCAAGGTATAGCCCATGGGGTGGGAGAAATGGGCTACATTTTCTAAGATAGAAAAGACGAAAGGGGGTGTGCAACATCCCTAGAAGGCGGATTTAGTAGTAAAGCGGGACCATAGAGCCCCCTTTAAACCGGCCCTGGAGCACGT
		Pelecanus_conspicillatus         CTCACCATGCTAGCATCATGACTAATCTTTTTACTAATCATTCAACCTAAGCTACTATCATTTACCACCACGAACCCACCCCTCAACAAACCCTCAATAGCTCCAAAAACCACTTCCTGAACCTGACCATGAACCTAAGCTTCTTCGACCAATTCACAAGCCCATGTCTACTAGGTATCCCTCTAATCCTACTCTCAATACTGTTTCCCGCCCTACTACTCCCATCCCCCAATAACCGATGAATCAACAATCGCCTCTCCACCCTTCAACTATGGCTCATCAACCTAATTACAAAACAACTAATAACACCACTGAATAAAAAAGGCCACAAATGAGCCTTAATCCTAACATCTCTAATAATACTACTCCTCATAGTCAACCTTCTAGGCCTACTGCCGTACACATTCACCCCAACCACCCAACTATCAATGAATATAGCACTAGCCTTCCCACTGTGACTAGCCACCATACTTACAGGCCTACGAAACCAGCCCTCAATCTCCCTAGGCCATCTGCTGCCCGAAGGGACACCAACACTACTAATCCCTGCCCTGATCATAATCGAAACCGCCAGCCTCCTTATCCGACCGCTAGCACTAGGAGTCCGCCTCACAGCAAACCTCACAGCAGGGCACCTGCTCATCCAACTCATCTCTACAGCCACAACAGCCCTACTCCCCATCATCCCAGCAGTCTCCATCCTAACTGCATCAATCCTGTTTCTCCTAACAATCCTAGAAGTAGCAGTAGCTATGATCGCCTAGCCCTAAATCTTGATACTTCCACCACCAAAGTATCCGCCTGAGAACTACGAGCACAAACGCTTAAAACTCTAAGGACTTGGCGGTGCTCCAAACCCACCTAGAGGAGCCTGTCCTATAATCGATAACCCACGATATACCTGACCACTTCTTGCCAACGCAGCCTACATACCGCCGTCGCCAGCTCACCTCTGAGAGAGCTACAGTGAGCACAATAGCCCGCTAACAAGACAGGTCAAGGTATAGCTTATGAAGTGGAAGAGATGGGCTACATTTTCTAAAGTAGAAAACACGAAAGGGGGCATGAAATGCTCCCGGAAGGCGGATTTAGCAGTAAAGGGGGATAATAAAGCCCTCTTTAAGCTGGCTCTGGAGCACGT
		Pelecanus_occidentalis           ?????CATACTAA?ATCATGACTGATCTTCTCAYTAGTTATTCAACCCAAACTCCTATCATTTACCACCACAAACCCACCCCTCAATAAACCCTCAATAGCCCCTAAAACCTCTTCCTGAACTTGACCATGAACCTAAGCTTCTTCGACCAATTCACAA??CCATGCTTACTAGGCATCCCACTAATCCTACTTTCAATACTATTCCCCGCCCTACTACTCCCATCCCCAAACAACCGATGAATCAACAATCGCCTCTCCACCCTACAACTATGATTCATTAACCTAATTACAAAACAACTAATAACACCCCTAAATAAAGAAGGACATAAATGAGCCTTAATCCTAACATCTCTGATAATACTACTCCTCATAATCAACCTTCTAGGCCTACTACCATACACATTCACCCCAACCACCCAACTATCGATAAATATAGCACTAGCCTTCCCACTATGACTAGCCACCATACTCACAGGTCTGCGAAATCAACCCTCAATCTCTCTAGGCCATCTATTACCCGAAGGCACACCAACACCACTGATCCCTGCCCTAATCATAATCGAAACCGCCAGCCTCCTTATCCGACCACTAGCCCTAGGAGTCCGCCTTACAGCAAACCTTACAGCAGGGCACCTACTCATCCAACTTATTTCCACAGCCACAACAACCCTACTCCCCATTATCCCAGCAGTCTCCATCCTAACTGCATCAATCCTATTCCTCCTGACAATCCTGGAAGTGGCAGTAGCTATGATCGCCTAGCCCTAAATCTTGATACTTCCCCCACTAAAGTATCCGCCTGAGAACTACGAGCACAAACGCTTAAAACTCTAAGGACTTGGCGGTGCTCCAAACCCACCTAGAGGAGCCTGTCCTATAATCGATAATCCACGATGCACCCAACCACTCCTTGCCAATGCAGCCTACATACCGCCGTCGCCAGCCCACCTCTGAGAGAGCCATAGTGAGCATAATAGCCCGCTAGCAAGACAGGTCAAGGTATAGCCTATGAAGTGGAAGAGATGGGCTACATTTTCTAAATTAGAAAACACGAAAGAGGGCATGAAATGCCCCCGGAAGGCGGATTTAGCAGTAAAGAGGGACAATAGAGCCCCCTTTAAACTGGCTCTGGAGCACGT
	;
END;

BEGIN CODONS;
CODONPOSSET * CodonPositions = 
 N: 759 - 1141 , 
 1: 1 - 127 \ 3 129 132 133 135 - 756 \ 3 , 
 2: 2 - 128 \ 3 130 131 134 136 - 757 \ 3 , 
 3: 3 - 126 \ 3 137 - 758 \ 3 ; 
 CODESET * UNTITLED = mtDNA.mam.ext: all ; 
 END;

BEGIN ASSUMPTIONS;
USERTYPE 4_to_1 ( STEPMATRIX ) = 4 
 A C G T 
 . 4 1 4 
 4 . 4 1 
 1 4 . 4 
 4 1 4 . 
 ; 
 
 USERTYPE 6_to_1 ( STEPMATRIX ) = 4 
 A C G T 
 . 6 1 6 
 6 . 6 1 
 1 6 . 6 
 6 1 6 . 
 ; 
 
 USERTYPE 3_to_1 ( STEPMATRIX ) = 4 
 A C G T 
 . 3 1 3 
 3 . 3 1 
 1 3 . 3 
 3 1 3 . 
 ; 
 
 USERTYPE 2_to_1 ( STEPMATRIX ) = 4 
 A C G T 
 . 2 1 2 
 2 . 2 1 
 1 2 . 2 
 2 1 2 . 
 ; 
 
 OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; 
 TYPESET user_4_to_1 = 4_to_1: 1 - 1141 ; 
 TYPESET user_6_to_1 = 6_to_1: 1 - 1141 ; 
 TYPESET user_3_to_1 = 3_to_1: 1 - 1141 ; 
 TYPESET user_2_to_1 = 2_to_1: 1 - 1141 ; 
 END;