#NEXUS [written Wed Aug 15 23:29:58 EDT 2012 by Mesquite version 2.72 (build 527) at mac-appledemacbook-pro-2.local/192.168.1.27] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=20; TAXLABELS Biophytum_abyssinicum Oxalis_corniculata1 Oxalis_corymbosa Oxalis_wulingensis Oxalis_griffithii Oxalis_acetosella Oxalis_articulata Oxalis_barrelieri Oxalis_corniculata2 Oxalis_obtriangulata Oxalis_perdicaria Oxalis_pescaprae Oxalis_stricta Oxalis_triangularis Oxalis_pachyrrhiza Oxalis_valdiviensis Oxalis_dolichopoda Oxalis_vulcanicola Oxalis_micrantha Oxalis_oregana ; END; BEGIN CHARACTERS; TITLE Oxalis_wulingensis_ITS; DIMENSIONS NCHAR=691; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Biophytum_abyssinicum ACCTGCGGAAGGATCATTGTCAAAACCTGC-AAAGCAGAACCACCGGCGAACA-TGTTCCCAACACAACCTGACGGTCGCGGGAAGTG-------------------------------CTTATGCCTTTCCGCCCTG-----TCAAACCGTACCC-CCGGCGCGAATCGCGCCAAGTAATCCACATAGTGAGAGCGATCGTCCTCGCGGCCCGGAAACGGATACCTCGTGGGG-----CGTACTTTCTCT--CGAAATAAACA------AATACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAGCCTTTAGGCCGAGGGCACGTCTGCCTGGGTGTCACACATCGTCGCCCAA-AAA-ACCATTGACCCTCTCTCGGGGGGGCTTTTGAGTGGGCGGAATATGGCCTCCCGTGAGCTTCCGTCTCGCGGTTGGCCGAAATAAGAGC-CCGGGGCGTCG-AACGCCACGACTAGCGGTGGTTGGCATGTTCCAATG-ACTACTTAACCCAGTCGCGAGCGGTCGAATCCGAG-ACACGGCGCTCG----AGTACCCCTAA-GCGTCGCCCAG-CGATGCTCGT--TACGCGACCCCAGG Oxalis_corniculata1 ACCTGCGGAAGGATCATTGTCGATACCTGC-CTAGCAGAGCGACCCGAGAACT-CGTTTACAAACC-GAAGGGCCGTTCCG--GAGAGGGCTCGGCGGC--CCGGCCTC-GGCCGGTGCCCGACGTCCCTCGACGGCGCGAGCCAACAAC-AATCC-CCGGCGCGAGCTGCGCCAAGGAAACCGCA-AAAGAGGGTGGGCCTCCCGGGCCTCCGGAGACGGAGCGCGCCTCGGG--AGATCCCATCCTCCT--TGTAACAGTCGA-AATAAAAACGACTCTCGACAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAGCCGTTAGGCCGAGGGCACGTCTGCCTGGGTGTCACACATCGTCGCCCCC-AAACATCCACGCCTCCAG----GGGCG-----TGGCGGG-CGGAAACTGGCCTCCCGTGAGCCTACG-CTCGCGGCTGGCCCAAATTCAAGTGCCAAGGTGTCG-AGCGCCTCGACCAGCGGTGGTTGGCATGTTCCAATG-ACCCTCTATCCCGGTTGTGCGCGCCCGTCGCCTTGTTCGCGGTGCTTA----CCGA-CCCTCTTGCGCCGCACCGACGACGCTCGC--TTCGCGACCCCAGG Oxalis_corymbosa ACCTGCGGAAGGATCATTGTCGATACCTGCTTTTGCAGCGCAACATGCGAATG-TATTCTGGAAGA--AAGGA--CCCGAG--CTACGGACGAGTCGGGTGCTGGCCCTAGG-------CCAGTTGCTGCTTGTTCCGTGGCCTGAAAAC-AAACC-CCGGCGCGAGTCGCGCCAAGGAATCTATA-ATAGAGAGTTTGCTCCGCGTGTC--TGGAGACGGACCACGCGCGTAA--GCACGCGATCTC-TT--CATATTGTCAA------TGAATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAGCCTTTAGGCCGAGGGCACGCCTGCCTGGGTGTCACACATTGTCGCCTCC-AAA-GCCTTTG---CTCT----ATGCA-----TGGCTGG-CGGAAAATGGCCTCCCGTG-CGCTCGTTCGCGTGGTTGGCCGAAAATC-AGTGCCAAGGTCTAG-AGCGCCTCGACCAGCGGTGGTTGGCATGTTCCAATG-ACCCTCTTGCACGGCTGTGTGCTGCTCTGCCTTGA-TTGTGGCGCCGA-TTTGATACCCCTCATGCGT--------TTACGCATGCTATATGCGACCCCAGG Oxalis_wulingensis -CCTGCGGAAGGATCATTGTCGATGCCTGC-TTAGCAGAACAACTTGAGAATGTTATTCGGTTAGG--AAAAAAAATTGAG--CTTTGGAGTGGTTGGCTTCTAGCCTTTGG-------CTAGTTTTCGCTTATTCCAAGGCATAAAAA--AAACC-CCGGCGCGAGTTGCGCCAAGCAATCCACA-ATAGAGAGTGGGCCTCATGTGTC--TGGAGACGGACAACTCATGGAT--GCACACAATCTG-AA--TGTATTGTACA------ATAATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAGCCTTTAGGCCGAGGGCACGCCTGCCTGGGTGTCACACATTGTTGCCTTTG-AA-ACCCTTTC--CTTT----AAGCG-----TTTTAGG-CGGAAAATGGCCTCCCGTG-CGCCCGTTGTTGTGGTTGGCCGAAAATCAAGTGCCAAGGTCTTG-AGTGCCTCGACCAACGTTGGTTGGCATGTTCCAATG-ACCCTCTTGCTTGGTTGTGTGCGGCTTTGCCTTGG-TTTTGGTGCCTA--TTGTGACCCAT-ATGCGTTGCTTTGTTGACGCTTGC--TATGCGACCCCAGG Oxalis_griffithii ACCTGCGGAAGGATCATTGTCGATACCTGC-TTAGCAGAACAACTTGAGAATGTTATTCGGTTAGG--AAAAAAAATTGAG--CTTTGGAGTGGTTGGCTTCTAGCCTTTGG-------CTAGTTTTCACTTATTCCAAGGCATAAAAA--AAACC-CCGGCGCGAGTTGCGCCAAGCAATCCACA-ATAGAGAGTGGGCCTCATGTGTC--TGGAGACGGACAACTCATGGAT--GCACACAATCTT-CT--TGTATTGTACA------AAAATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAGCCTTTAGGCCGAGGGCACGCCTGCCTGGGTGTCACACATTGTTGCCTTTG-AA-ACCCTTTC--CTTT----AAGCG-----TTTTAGG-CGGAAAATGGCCTCCCGTG-CGCCCGTTGTTGTGGTTGGCCGAAAATCAAGTGCCAAGGTCTTG-AGTGCCTCGACCAACGTTGGTTGGCATGTTCCAATG-ACCCTCTTGCTTGGTTGTGTGCGGCTTTGCCTTGG-TTTTGGTGCCTA--TTGTGACCCAT-ATGCGTTGCTTTGTTGACGCTTGC--TATGCGACCCCAGG Oxalis_acetosella ACCTGCGGAAGGATCATTGTCGATACCTGC-TTAGCAGAACAACTTGAGAATG-TATTCGGTTAGGAAAAAAAAAATTGAG--CTTCGGAGTGGTTGGCTTCTAGCCCTTGG-------CTAGTTTTCGCTTATTCCAAGGCAT-AAAA--AAACC-CCGGCGCGAGTTGCGCCAAGCAATCCACA-ATAGAGAGTGGGCCTCATGTGTC--TGGAGACGGACAACTCATGGAT--GCACACGATCTT-CT--TGTATTGTACA------AAAATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAGCCTTTAGGCCGAGGGCACGCCTGCCTGGGTGTCACACATTGTTGCCTTTG-AA-ACCCTTTC--CTTT----AAGCG-----TTTTAGG-CGGAAAATGGCCTCCCGTG-CGCCCGTTGTTGTGGTTGGCCGAAAATGAAGTGCCAAGGTCTCG-AGTGCCTCGACCAACGTTGGTTGGCATGTTCCAATG-ACCCTCTTGCTTGGTTGTGTGCGGCTTTGCCTTGG-TTTTGGTGCCTA--TTGTGACCCAT-ATGCGTTGCTTTGTTGACGCTTGC--TATGCGACCCCAGG Oxalis_articulata ---------------ATTGTCGATACCTGCTTTT-CAGCGCAACATGCGAATG-TATTCTGGAAGA--AAGGA--CCCGAG--CTACGGACGAGTCGGGTGCTGGCCCTAGG-------CCAGTTGCTGCTTGTTCCGTGGCCTGAAAAC-AAACC-CCGGCGCGAGTMGCG-CAAGGAATCTATA-ATAGAGAGTTTGCTCCGCGTGTC--TGGAGACGGACCACGCGCGTAA--GCACGCGATCTC-TT--CATATTGTCAA------TGAATGA---------------------------------------------------------ACTSGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAGCCTTTAGGCCGAGGGCACGCCTGCCTGGGTGTCACACATTGTCGCCTCC-AAA-GCCTTTG---CTCT----ATGCA-----TGGCTGG-CGGAAAATGGCCTCCCGTG-CGCTCGTTCGCGTGGTTGTCCGAAAATC-AGTGCCAAGGTCTAG-AGCGCCTCGACCAGCGGTGGGTGGKATGTTCCAATG-ACCCTCTTGCACGGCTGTGTGCTGCTCTGCCTTGATTTGTGGCGCCGA-TTTGATACCCCTCATGCGT--------TTACGAATGCTATATGCGACCCCAGG Oxalis_barrelieri ACCTGCGGAAGGATCATTGTCGATACCTGC-CTAGCAGCACGACCCGCGAACG-CGTTTGGATGGC-AAACCATCGCGCCG--CGGGGGGTTGCCCGTCCGCCTGCCTCT-GCCGGCG-ACGGCGCCCCCCGGC----CGGCCTAACAAC-AAACCCACGGCGCGAGTCGCGCCAAGGAATCCACA-AACGA--------------------TCGAGATCGGGCTCGACCCGAG----------TCTCTTT--TGTAAGATCCAAGGAAAAAAACGACTCTCGACAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAGCCGTTAGGCCGAGGGCACGCCTGCCTGGGTGTCACACGTCGTCGCCCCC-ACA-ATCCCCGCCCATCC----GGGCG-----GGGAGGG-CGGAAGTTGGCCTCCCGCGAGCTGCTGCCTCGCGGTTGGCCCAAATCGAAGTGCCAAGGCGTCG-AGAGCCTCGACCAGCGGTGGTTGGCATGTTCCAATG-ACCCCCTTGCCCGGTCGTGCGCGCTCCTCGCCCCAT-CGTGGCCCCTG----CGGA-CCCTTGCGCGTCGCTCCGGCGGCGCTCGC--TTCGCGACCCCAGG Oxalis_corniculata2 ACCTGCGGAAGGATCATTGTCGATACCTGC-CTAGCAGAGCGACCCGAGAACT-CGTTTACAAACC-GAAGGGCCGTTCCG--GAGAGGGCTCGGCGGC--CCGGCCTC-GGCCGGTGCCCGACGTCCCTCGACGGCGCGAGCCAACAAC-AATCC-CCGGCGCGAGCTGCGCCAAGGAAACCGCA-AATGAGGGTGGGGCTCCCGGGCCTCCGGAGACGGAGCGCGCCTCGGG--AGATCCCATCCTCCT--TGTAACAGTCGA-AATAAAAACGACTCTCGACAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAGCCGTTAGGCCGAGGGCACGTCTGCCTGGGTGTCACACATCGTCGCCCCC-AAACATCCACGCCTCCAG----GGGCG-----TGGCGGG-CGGAAACTGGCCTCCCGTGAGCCTACG-CTCGCGGCTGGCCCAAATTCAAGTGCCAAGGTGTCG-AGCGCCTCGACCAGCGGTGGTTGGCATGTTCCAATG-ACCCTCTATCCCGGTTGTGCGCGCCCGTCGCCTTGATCGTGGTGCTTA----CCGA-CCCTCTTGCGCCGCACCGACGACGCTCGC--TTCGCGACCCCAGG Oxalis_obtriangulata ------------------G--G-CCCCTGCTCT--CAGAACAACTTGAGAATG-TATTTGGTTAGC--AAAAAAAATTGAG--CTTTGGAGTGGTGGGCTTCTAGCC-TTGG-------TTATAGTCCGCTTATTCCAGGGCATAA-AA--AAACC-CCGGCGCGAGTTGCGCCAAGCAATCCACA-ATAGAGAGTGGGCCTCATGTGTC--TGGAGACGGACAAATCATGGAT--GCTCACAATCTT-CT--CGTATTTT-AA------AAAATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAGCCTTTAGGCCGAGGGCACGCCTGCCTGGGTGTCACACATCGTTGCCTCTG-AA-ACCCTTTC--TTTT----AAGAG-----TTTTA-GCCGGAAAATGGCCTCCCATGCCCCCCGTTGTTGTGG-TGGCCAAAATTCAAGTGCCAA-GTCTCGAAGTGCCTCGACCAACGTTGGTT-GCATGGT-C-ATGAACCCT-TTGTTTGGCCG-GGGG-GC-TTGCCTTGG-TTT-GG-GCCTA--TTGGGA-CCAT-TT-C-T-CTTTTGTTGA-CTTTTT--TG------------ Oxalis_perdicaria ACCTGCGGAAGGATCATTGTCGATACCTGCTTTTGCAGAACAACATGCGAATA-TATTCGGGAAGG-AAAAA---TTCGAG--CCGCGGACGAGTCGGGTGCTTGCCCTAGG-------CCAGTGTCCGCTTGCTCCGCGGCCTAAAAAC-AAACC-CCGGCGCGAGTCGCGCCAAGGAATCTACA-ATAGAGAGTTTGCTCCGCGTGTC--TGGAGACGGACAACGCAGTGGA--GCACTCGTTCTC-TT--CATATTGTCAA------AAAATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCCAAGCCTTTAGGCCGAGGGCACGCCTGCCTGGGTGTCACACATTGTCGCCTCC-AAA-GCCCATG---CTCT----AAGCA-----TGGCTGG-CGGAAAATGGCCTCCCGGG-CGCTCGTTCGCGCGGTTGGCCGAAAACC-TGTGCCAAGGTCTAG-AGCGCCTCGACCAGCGGTGGTTGGCATGTTCCAATG-ACCCTCTTGCACGGCTGTGTGCTGCTCTGCCTTGA-TTGTGGCGCCGA-TTTGTGACCCATCATGCGT--------CGACGCATGC--TATGCGACCCCAGG Oxalis_pescaprae ACCTGCGGAAGGATCATTGTCGATACCTGCTTTTGCAGATCAACACGCGAACG-TATTCGGG-AGG-GAAAA---TCCGAG--CTGCGTGCG-----------------------------AGCGGCTGCTCGTTCCGTGGCCCAAAAACAAAACC-CCGGCGCGAGTCGCGCCAAGGAATCTACA-ATAGGGAGTTTGCTCCGCGTGTC--CGGAGACGGACTACGCKCGGAA--GCAGGCGTTCTCTTT--CAAATTGTCAA-------AAATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAGCCTTTAGGCCGAGGGCACGCCTGCCTGGGTGTCACACATTGTCGCCTCC-AAA-TCCTCTG---CTCTCTCCGAGCA-----TTGCCGG-CGGAAAATGGCCTCCCGTG-CGCTCGTCCGCGCGGTTGGCCGAAAATC-AGTGCCAAGGTCAAG-AGCGCCTCGACCAGCGGTGGTTGGCATGTTCCAATG-ACCCTCTTGCACGGCCGTGTGCCGCTCTTCCCTGT-TTGCGGCGCCTA-ATCGTGACCCCTCATGCAT--------CGACGCATGC--TATGCGACCCCAGG Oxalis_stricta ACCTGCGGAAGGATCATTGTCGATACCTGC-CTAGCAGAGCGACCCGAGAACT-CGTTTCGAAACC-GAAAGGCCGTCCGG--AAGAGGGCTCGTCGGC--CCGGCC-TCGGCCGGCGCCCGACGTCCCTCGACGGGGCGAGCCGACAAC-AACCC-CCGGCGCGAGCCGCGCCAAGGAAACCGCA-AAAGAGGGTGGGGCTCCCGGGCCTCCGGGGACGGAGCGCGCCTCGGG--AGATCCCATCCTCCT--TGTAACAGTCGA-AATAAAAACGACTCTCGACAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAGCCGTCAGGCCGAGGGCACGTCTGCCTGGGTGTCACACATCGTCG-CCCC-AAACACCCACGCCTCCAG----GGGCG-----TGGCGGG-CGGAAACTGGCCTCCCGCGAGCCTCCG-CTCGCGGCTGGCCCAAATTC-AGCGCCAAGGCGTCG-AGCGCCTCGACCAGCGGTGGTTGGCATGTTCCAATG-ACCCTCTATCCCGGTTGTGCGCGCCCGTCGCCTTGTYCGCGGCGCTTA----CCGA-CCCTCCAGCGCCGCTCCGGCGACGCTCGC--TTCGCGACCYCAGG Oxalis_triangularis ACCTGCGGAAGGATCATTGTCGATACCTGCTTTTGCAGAACAACATGCGAATG-TATTCTTGAAGR-AAAAA---TTCAAG--CTGYGGACGAGTC-GGTGCTGGCC-CTGGG------CTAGTGTCTGCTTGTTCCGTGGCCCAAAAAC-AAACC-CCGGCGCGAGTCGCGCCAAGGAATCTACA-ATAGAGRGTYTGCTCCGTGTGTC--TGGAGACGGACTACGCGCGGAA--GCACACGTTCTC-TT--CATATTGTCAA------AAAATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCCAAGCCTTTAGGCCGAGGGCACGCCTGCCTGGGTGTCACACATTGTCGCCTCC-AAA-GCCCATG---CTCT----AAGCA-----TGGCTGG-CGGAAAATGGCCTCCCGTG-CGCTCGTTCTCGCGGTTGGCCGAAAATC-AGTGCCAAGGTC-AG-AGCGCCTCGACCAGCGGTGGTTGGCATGTTCCAATG-ACCCTCTTGCACGGCTGTGYGCTGCTCTGCCTTGA-TTGTGGTGCCGA-TTTGTGACCCCTCATGCAT--------CGACGCATGC--YATGCGACCCCAGG Oxalis_pachyrrhiza ACCTGCGGAAGGATCATTGTCGATACCTGC-TTGGCAGAACAACTTGCGAACG-TATTCACGAAGG-AAAAAG------AG--CTCCGGGCGAGGCGGCCTCTAGCC-CCGGC------T-AGTGCCTCCTTGCTCCGTGGCCTAAACTC-AAAAC-CCGG--CGAGTTGCGCCAAGGAATCTACG-ACAGG--------------------------CGGACTGCGCCTGGAA--GCGCGCGGTCTC-CT--TACATAGTCAAAATTAAAAAATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAGCCTTTAGGCCGAGGGCACGCCTGCCTGGGTGTCACACATTGTCGCCTCC-AAA-GCCCTTTG--CTCG----AAGCA-----TTGCTGG-CGGAAAATGGCCTCCCGTG-CGCTCGCTCGCGCGGTTGGCCGAAAATC-AGTGCCAAGGTCTGG-AGCGCCACGACCAGCGGTGGTTGGCACGTTCCAATG-ACCCTCTTGCACGGTCGCTCGCCGCTCCGACTTGA-ACGTGGTGCCTATTTTGTGACCCCTTACGCGTCGCTTTGCCGACGCTCGC--TATGCGACCCCAGG Oxalis_valdiviensis ACCTGCGGAAGGATCATTGTCGATACCTGC-TTGGCAGAACAACTTGCGAACG-TATTCATGAAGC-AAAAGGAACTCGGGCTCTCCGGGCGAGTCGGCTTCTAGCC-CAGGC------TGGGTGCCTCCTCGTTCCGTGGCCTAAACTC-AAAAC-CCGGCGCGAGTTGCGCCAAGGAATCTACG-ATAGG--------------------------CGGACGGCGCGTGGAA--GCGCGCGGTCTC-CTCATACATAGTAAAAAC---AAAATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAGCCTTTAGGCCGAGGGCACGCCTGCCTGGGTGTCACACATTGTCGCCTCC-AAA-GCCCTTTG--CTCG----AAGCA-----TTGCTGG-CGGAAAATGGTCTCCCGTG-CGCTTGCTCGCGCGGTTGGCCGAAAATC-GGTGCCAAGGTCTGG-AGAGCCACGACCAGCGGTGTTTGGCGCGTTCCAATG-ACCCTCTTGCACGGTCGTGCGCTGCTCCGCCTTGA-CTGTGGTGCCTA-TTTGTGACCCCTTACGCGTCGCTTTGCCGACGCTCGC--TATGCGACCCCAGG Oxalis_dolichopoda -CCTGCGGAAGGATCATTGTCGATACCTGC-TTGGCAGAACAACATGCGAACG-TATTCATGAAGG-AAAAAGAATTCGAG--CTTCGGGCGAGTTGGCCTCTAGCC-CTGGC------T-AGTGCCTCCTTGTTCCGTGGCCTAACCTC-AAAAC-CCGGCGCGAGTTGTGCCAAGGAATCTACG-ATGGG--------------------------CGGACTGCGCCT--AA--GCGCACGGTCTC-CT--TATATAGTCGATA----AAAAAGACTCTCGGCAAC------------------------------------------------------------------TCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCTAAG-CTTTAGGCCGAGGGCACGCCTGCCTGGGTGTCACACATTGTCGCCTCC-AAA-GCCCTTTGCTCTCG----AAGCA-----TTGTTGG-CGGAAAATGGCCTCTCGTG-CGATCGCTCGCGTGGTTGGCTGAAAATC-AGTGCCAAGGTGTGG-AGCGCCACGACCAGCGGTGGTTGGCACGTTCCAATG-ACCCTCTTGCACGGTCGTGCGCTGCTCCAACTTGA-ATGCGTTGCCTA-TTTGTGACCCCTTACGCGTTGCTTTGTTGACGCTCGC--TATGCGACCCCAGG Oxalis_vulcanicola ACCTGCGGAAGGATCATTGTCGATACCTGC-TTGGCAGAACAACATGCGAACG-TATTCATGAAGG-AAAAAGAATTCGAG--CTTCGGGCGAGTTGGCATCTAGCC-CTGGC------T-AGTGCCTCCTTGTTCCGTGGCCTAACCTC-AAAAC-CCGGCACGAGTTGTGCCAAGGAATCTACG-ATGGG--------------------------CGGACTGCGCCTAGAA--GCGCACGGTCCC-CT--TATATAGTCGATA----AAAATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCTAAG-CTTTAGGCCGAGGGCACGCCTGCCTGGGTGTCACACATTGTCGCCTCC-AAA-GCCCTTTGCTCTCG----AAGCA-----TTGCTGG-CGGAAAATGGCCTCTCGTG-CGCTCGCTCGCGTGGTTGGCTGAAAATC-AGTGCCAAGGTGTGG-AGCGCCACGACCAGCGGTGGTTGGCACGTTCCAATG-ACCCTCTTGCACGGTCGTGTGCTGCTCCAACTTGA-ATGCGGTGCCTA-TTTGTGACCCCATACGCGTTGCTTTGTTGACGCTCGC--TATGCGACCCCAGG Oxalis_micrantha ACCTGCGGAAGGATCATTGTCGATACCTGC-CTGGCAGAACAACTTGCGAACG-TATTCATGAAGG-AAAAGGTATTCGGG--CTCCGGGCGAGTCGGCTTCCAGCC-CAGGC------TGGGTGCCTCCTCGTTCCGTGGCCTAAACAC-AAAAC-CCGGCGCGAGTTGCGCCAAGGAATCTACG-ATAGG--------------------------CGGACTGCGCGTGGAAGCGCGCGCGGTCTC-CTCATACATAGTCAAAA--AAAAAATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAGCCTTTAGGCCGAGGGCACGCCTGCCTGGGTGTCACACATTGTCGCCTCC-AAA-GCCCTCTG--CTCG----AAGCA-----TTGCTGG-CGGAAAATGGCCTCCCGTG-CGCTCGCTCGTGCGGTTGGCCGAAAATC-GGTGCCAAGGTCTGG-AGAGCCACGACCAGCGGTGGTTGGCGCGTTCCAATG-ACCCTCTTGCACGGTCGTGCGCTGCTCCGCCTTGA-CTGTGGTGCCTA-TTTGTGACCCCTTACGCGTCGCTTTGCCGACGCTCGC--TATGCGACCCCAGG Oxalis_oregana ACCTGCGGAAGGATCATTGTCGATACCTGC-TTAGCAGAACAACTTGAGAATG-TATTCGGTTAGGAAAAAAAAATT-GAG--CTTTGGAGTGGTTGGCTTCTAGCC-TTGGC------T-AGTTTCCGCTTATTCCAGGGCATAAAAA--AAACC-CCGGCGCGAGTTGCGCCAAGCAATCCACA-ATAGAGAGTGTGCCTCATGTGTC--TGGAGACGGACAACTCATGGAT--GCACACGATCTTCTTG-TAT--TGTACAAA------AATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAGCCTTTAGGCCGAGGGCACGCCTGCCTGGGTGTCACACATCGTTGCCTTTGAAA--CCCTTTC--CTTT----AAGTG-----TTTTAGG-CGGAAAATGGCCTCCCGTG-CGCCCGTTGTTGTGGTTGGCCGAAAATCAAGTGCCAAGGTCTCG-AGTGCCTCGACCAACGTTGGTTGGCATGTTCCAATG-ACCCTCTTGCTTGGTTGTGTGCGGCTTTGCCTTGG-TTTTGGTGCCTA--TTGTGACCCAT-ATGCGTCGCTTTGTTGACGCTTGC--TATGCGACCCCAGG ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 691; END; BEGIN TREES; Title 'Trees from "Oxalis_seal.tre"'; LINK Taxa = Taxa; TRANSLATE 1 Biophytum_abyssinicum, 2 Oxalis_corniculata1, 3 Oxalis_corymbosa, 4 Oxalis_wulingensis, 5 Oxalis_griffithii, 6 Oxalis_acetosella, 7 Oxalis_articulata, 8 Oxalis_barrelieri, 9 Oxalis_corniculata2, 10 Oxalis_obtriangulata, 11 Oxalis_perdicaria, 12 Oxalis_pescaprae, 13 Oxalis_stricta, 14 Oxalis_triangularis, 15 Oxalis_pachyrrhiza, 16 Oxalis_valdiviensis, 17 Oxalis_dolichopoda, 18 Oxalis_vulcanicola, 19 Oxalis_micrantha, 20 Oxalis_oregana; TREE PAUP_1 = (1,((((2,9),13),8),((((((3,7),12),11),14),((15,(17,18)),(16,19))),((((4,5),6),10),20)))); END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 691; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 691; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1345087798548; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 5980284539804154344; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 2067045212318414917; checksumv 0 2 3028721675 null numChars 691 short true bits 2305843009213693967 states 15 sumSquaresStatesOnly 250290.0 NumFiles 1 NumMatrices 1; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1160 753; setLocation 50 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #5980284539804154344 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 1696.1345087788495.3814747298801403828; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1060 686; setLocation 50 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 6; orientUp; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #2067045212318414917 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1060 686; setLocation 50 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;