NEXUS
[File created by TreeBASE:  7/26/07  21:07:42]
[Matrix accession#: M2202]

BEGIN TAXA;
	TITLE M2202;
	DIMENSIONS  NTAX=8;
	TAXLABELS
		Penicillium_felllutanum_746	Penicillium_coffeae_35366	Penicillium_indicum_3387	Penicillium_brocae_31472	Penicillium_phoeniceum_2070	Penicillium_chermesinum_2048	Penicillium_charlesii_778	Penicillium_thiersii_28162
	;
END;

BEGIN CHARACTERS;
	TITLE M2202;
	DIMENSIONS NCHAR=743;
	FORMAT DATATYPE = DNA MISSING = ? GAP = - ;
	MATRIX
		Penicillium_felllutanum_746        gaggcgttctccctcttcGTAAGTTG--TCTGATCTT-GATTGCGAATTTTGTTTGGCCTAGGGAAACGCAGCTAACC-ATGTTATTTTC---AACAGgacaaggatggcgatgGTGAGTGC--------------CCGACGACACCAGACAT-AAAAGTCCC---CCAGCAATTGGAATCATTTTTACTGAGACGAAATGGTGA-TTAGgacaaatcaccaccaaggagcttggcactgtcatgcgctcgcttggccagaacccctccgagtctgagctgcaggacatgatcaacgaagtcgacgccgataacaacggcaccattgatttccccgGTACAAAATTGCTGCAC----CACCCCCTCTCCGGCC--CTTCTCAGCTGAC-CC--GGACTGTTACTGATTT-CG-ACTAGaattccttaccatgatggcccgcaagatgaaggataccgactcagaggaggagattcgcgaggcattcaaggtgttcgaccgcgacaacaacggtttcatctccgccgctgagctgcgtcatgtcatgacctccatcggcgagaagctgaccgacgacgaggtggacgagatgatccgtgaagctgaccaggacggtgatggccgtatcgactGTACGTTCCAGCAGATCGGGAGAGCCCCTCGGTTTCCCCACTGCTCCCGTCAATCCCCCC--TCTTCACCACATTCCATGCTAACATTAGGTTTCTGATAGacaacgagttc
		Penicillium_coffeae_35366          gaggcgttctccctctttGTAAGTAC--AGCGAGGAT-GATA---AATCTCG---------GGAATACCCTGCTAACC-TGAATTACCTG---TACAGgacaaggatggcgatgGTAAGCCTAA---TCTCCGC--CCGACAACACTGGACAC-AACAAGCCT---TT-GCAATTGGAATATCCCCGACTAAGACGAATTGAATA-ATAGgccagatcaccaccaaggagcttggtaccgtcatgcgctccctcggccagaacccctccgagtctgagctgcaggacatgatcaacgaggttgacgccgacaacaacggcaccattgatttccctgGTATGTGATTCCTGCGCTGTTCACCGGAACTCCATGCGACTTTTGTTCTTCGTCC--GGACCTGTGCTTACAA-CATAACAGagttccttaccatgatggcccgcaagatgaaggataccgactcagaggaggagattcgtgaggcattcaaggtgttcgaccgtgacaacaacggcttcatctccgccgccgagctgcgccacgtcatgacttccattggtgagaagctgaccgacgacgaagtggacgagatgatccgcgaggcggaccaggatggcgacggccgtattgactGTATGTCACTCCA-----------CCCCAA----TCCCGGGAGGCCT----ATTTCCCAC--CCTTCATCGCTTGT--TGCTAACCGTCCGGAAC----AGacaacgagttc
		Penicillium_indicum_3387           gaggcgttctccctctttGTAAGTGC--TCCGATCTT-GATTGCGTGTCTTGCTTGACTTGGAACGCTTTAGCTAACAAATAATGCCCTG--TAATAGgacaaggatggcgatgGTGAGTGCGA---TCTGCGCC-CGGGCGACACTAGGCAC--TCTTGGCCA--TGAGAAATTGAAGAAATTTTTACTGAGACGGATCAATGA-ACAGgacaaatcaccaccaaggagctcggcactgtcatgcgctctctcggccagaacccctccgagtctgagctgcaggacatgatcaatgaggttgacgccgataacaacggcactatcgatttccccgGTACGAGACATCTGCGAT----------TTTCTATACCCTCACTAAATTCACTCA--GACCTTTTACTGACGTCCA--ATAGagttccttaccatgatggctcgtaagatgaaggataccgactcagaggaggagattcgggaggcattcaaggtgttcgaccgtgacaacaacggtttcatctccgccgctgagctgcgccatgtcatgacctccatcggtgagaagctcaccgacgatgaggttgatgagatgatccgcgaagcggaccaggatggcgacggccgtatcgactGTAAGTCTCAATT-AACGGGAAAGCCCC--------TCAACTTCCCTACTTATTCCTTCGAACCTCCCTTTGATTAA-TGCTAACCATTCTATTCACGTAGacaacgagttc
		Penicillium_brocae_31472           gaggcattctccctgtttGTGAGTACCATTTACTACT-GGCTAGAAAAATAAAACGTTGCCTAAAACCAATACTAATGGATACTTTTCCCGGTAATAGgacaaggatggcgatgGTGAGTGCGACCGTCTTCGATACCGATGATTTTAGATGCGATCACGCCTGATTTATCGATTGAACAAATA---ACTGAGACGAATAAACTCGACAGgccagattaccaccaaggagctgggcactgtcatgcgctccctcggccagaacccctccgagtctgagttgcaggacatgattaacgaggttgacgctgataacaacggaaccattgacttccctgGTACGACCGTCCTTCCC-------------TTCGAACG------ATTCAAGCTCC--AGACCCATATTAACATGCGACACAGagttccttaccatgatggcacgtaagatgaaggacaccgactccgaggaggagattcgcgaggctttcaaggtctttgaccgcgacaacaacggatttatctctgccgccgagctgcgccatgtgatgacctcaattggtgagaagctgactgacgacgaggtggacgagatgatccgtgaggcggaccaggatggtgatggtcgcattgactGTATGTTCCCTCGGAAACCCCGC-CCTCGAACTGCAACAGCGGGCCT----TATCTACAC--GATTCACTAGAACAC---ACAAGCTGACCTATC--ACAGacaacgagttc
		Penicillium_phoeniceum_2070        gaggccttctcccttttcGTAAGTAC--ATCGATGAT----G----ATATAGCTCC-CGCGAGGATTCCCTACTAACC-AGAAATACCTG---CACAGgacaaggatggcgatgGTAAGCCTAA---TATCCGC--CCGACAACATTGGACAG-ATCAAGTCT----CTGCAATTGAGAGATCCCCGGCTAAGACGAATTGAACA-ATAGgacaaatcaccaccaaggagcttggtaccgtcatgcgctccctcggccagaacccctccgagtctgagcttcaggacatgatcaacgaggttgacgccgacaacaacggcaccatcgatttccctgGTATGTCATACCTGCGATTCCCATCGGAGCTACACGCGAGTTTCGTGCTTCGCTA--GGACCTGCGCTGACAC-CTCCACAGagttccttaccatgatggcccgcaagatgaaggataccgactcagaggaggagattcgtgaggcattcaaggtgttcgaccgcgacaacaacggtttcatctccgccgccgagctgcgccacgtcatgacctccattggtgagaagcttaccgacgacgaagtggatgagatgatccgcgaggcggaccaggatggcgacggccgtattgactGTATGTCCCGAGA-----------------A---TCTCGGGAGGCCC---CATTTCCCGC--CCCTCGTCGCTTGGC--GCTAACCGATCGAAAT----AGacaacgagttc
		Penicillium_chermesinum_2048       gaggcgttctccctcttcGTAAGTGC--TCCGATCTT-GATCGCGGGTTTTGCTTG-CCTTGCAACACTTAGCTAACCAGTAATGCCTTGG--AATAGgacaaggatggcgatgGTGAGTGCGA---TCTGCGCC-CGGGCGACACTAGGCACTCTCGGTCAT----GAGCAATCGAGGAAATTTTTACTGAGACGAATTGATGA-ATAGgacaaatcaccaccaaggagctgggcactgtcatgcgctctctcggccagaacccctccgagtctgagctgcaggacatgatcaatgaggttgacgctgataacaacggcaccatcgattttcccgGTACGAGATACCTGCGATTT--------TCTAGGACC--C--CACTGCTTCCACCTAGATCGTTTACTGACGTTCA--ATAGagttccttaccatgatggcccgtaagatgaaggataccgactcagaggaggagattcgggaggcattcaaggtgttcgaccgtgacaacaacggcttcatctctgctgctgagctgcgccatgtcatgacctccatcggtgagaagctaaccgacgatgaggttgatgagatgatccgcgaagcggaccaggatggcgatggccgtatcgactGTAAGTCTCAATA-AACGGGAAAGCTCC--------TCAAGCTTTCTCGCTCATTCCTTCGACCGCCCTCCGGTCCAATGCTAACCACGCAATTCGTGTAGacaacgagttc
		Penicillium_charlesii_778          gaggcgttctccctcttcGTAAGTTG--TCTGATCTTTGATTGCGGATTTTGTTTGGCCTAGGGAAACGCAGCTAACC-GCGTTATTCTC---AACAGgacaaggatggcgatgGTGAGTGC--------------CCGATGACACCAGACAT--TAAAGCCC--TCCAGCAATTGGAGTCATCTTGACTGAGACGAAATGATCA-TTAGgacaaatcaccaccaaggagcttggcactgtcatgcgctcgcttggccagaacccctccgagtctgagctgcaggacatgatcaacgaagtcgacgccgacaacaacggcaccattgatttccccgGTATAAAATTGCTGCACCC--CCTTCCCTCTCTGGCC--CTTCTCGGTTGAC-CC--GGACTGTTACTGATCTTCG-ACTAGaattccttaccatgatggcccgcaagatgaaggataccgactcagaggaggagattcgcgaggcattcaaggtgttcgatcgcgacaacaacggtttcatctccgccgctgagctgcgtcacgtcatgacctccatcggcgagaagctgaccgacgacgaggtggacgagatgatccgtgaagccgaccaggacggggatggccgtatcgactGTACGTTCCAGCAGGCCGGGAAAGCCCCTCGGTTTCTCCACTGCTCTCGTCAACCCCCCCCCTCTTCACCACATTCCCTGCTAACATTGAGTTTCTGATAGacaacgagttc
		Penicillium_thiersii_28162         gaggccttctccttgtttGTGAGTAACCTGATCTATT-GATTC--AAGGTTATTGG----CTTGGTTTAGTACTAATGGATACTTTCTCCGGCCATAGgacaaggatggcgatgGTGAGTGCGA----C--CGTTTACGATGACTTCAAGCTTGATTGTGCCA----CGGCCATTCAGCGACCAATAACTAAGAC-AAGTGATCA-ATAGgacaaatcaccaccaaggagctgggtactgtcatgcgctccctcggccagaacccctctgagtctgagctgcaggacatgattaatgaggtcgacgctgacaacaacggcaccattgacttccctgGTATGACTTCTCCTCAAA----ACTCGCAATCACGCCG--GGGTATTCTACC-CG--AGACTCATAATAACTTGCG--ACAGaattcctcaccatgatggcccgtaagatgaaagacaccgactccgaggaggagattcgtgaggcattcaaggtgttcgaccgcgataacaacggttttatctccgcggccgaactgcgccatgtcatgacttcgatcggcgagaagctgaccgatgatgaggtggatgagatgatccgcgaggcggaccaggatggtgatggccggatcgactGTATGCTTCCCTT-----------TCCCTTTCGGGACCAAGCATTTG----ACTTTCCAT----GTCATCGGAACA--TGTCGCGCTAACCTATC--ACAGacaacgagttc
	;
END;

BEGIN CODONS;
CODONPOSSET * CodonPositions = 
 N: 1 - 743 ; 
 CODESET * UNTITLED = Universal: all ; 
 END;

BEGIN ASSUMPTIONS;
OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; 
 EXSET * Exclude = 19 - 98 115 - 210 337 - 418 632 - 732 ; 
 END;