#NEXUS [written Mon Oct 14 23:35:23 SGT 2013 by Mesquite version 2.75 (build 566) at Simba.local/192.168.1.6] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=148; TAXLABELS Argulus_japonicus_1 Argulus_japonicus_2 Argulus_japonicus_3 Argulus_japonicus_4 Argulus_japonicus_5 Argulus_japonicus_6 Argulus_japonicus_7 Baccalaureus_falsiramus_Adult Baccalaureus_falsiramus_Ascothoracid_larva Baccalaureus_falsiramus_Nauplius_1 Baccalaureus_falsiramus_Nauplius_2 Baccalaureus_falsiramus_Nauplius_3 Baccalaureus_falsiramus_Nauplius_4 Baccalaureus_falsiramus_Nauplius_5 Baccalaureus_falsiramus_Nauplius_6 Bredocaris_admirabilis_1 Bredocaris_admirabilis_2 Bredocaris_admirabilis_3 Bredocaris_admirabilis_4 Bredocaris_admirabilis_5 Bredocaris_admirabilis_6 Darwinula_stevensoni_1 Darwinula_stevensoni_2 Darwinula_stevensoni_3 Darwinula_stevensoni_4 Darwinula_stevensoni_5 Darwinula_stevensoni_6 Darwinula_stevensoni_7 Darwinula_stevensoni_8 Darwinula_stevensoni_9 Derocheilocaris_remanei_1 Derocheilocaris_remanei_2 Derocheilocaris_remanei_3 Derocheilocaris_remanei_4 Derocheilocaris_remanei_5 Derocheilocaris_remanei_6 Derocheilocaris_remanei_7 Derocheilocaris_remanei_8 Derocheilocaris_remanei_9 Eubranchipus_grubii_1 Eubranchipus_grubii_2 Eubranchipus_grubii_3 Eubranchipus_grubii_Adult Glomeris_marginata_Adult Hesslandona_angustata_1 Hesslandona_angustata_2 Hesslandona_unisulcata_6 Hutchinsoniella_macracantha_1 Hutchinsoniella_macracantha_10 Hutchinsoniella_macracantha_11 Hutchinsoniella_macracantha_12 Hutchinsoniella_macracantha_13 Hutchinsoniella_macracantha_14 Hutchinsoniella_macracantha_15 Hutchinsoniella_macracantha_16 Hutchinsoniella_macracantha_17 Hutchinsoniella_macracantha_18 Hutchinsoniella_macracantha_2 Hutchinsoniella_macracantha_3 Hutchinsoniella_macracantha_4 Hutchinsoniella_macracantha_5 Hutchinsoniella_macracantha_6 Hutchinsoniella_macracantha_7 Hutchinsoniella_macracantha_8 Hutchinsoniella_macracantha_9 Hutchinsoniella_macracantha_Adult Klausmuelleria_salopensis Labidocera_aestiva_Adult Labidocera_aestiva_copepodid_1 Labidocera_aestiva_copepodid_2 Labidocera_aestiva_copepodid_3 Labidocera_aestiva_copepodid_4 Labidocera_aestiva_copepodid_5 Labidocera_aestiva_Nauplius_1 Labidocera_aestiva_Nauplius_2 Labidocera_aestiva_Nauplius_3 Labidocera_aestiva_Nauplius_4 Labidocera_aestiva_Nauplius_5 Labidocera_aestiva_Nauplius_6 Lepas_anatifera_Cyprid Lepas_anatifera_Nauplius_1 Lepas_anatifera_Nauplius_2 Lepas_anatifera_Nauplius_3 Lepas_anatifera_Nauplius_4 Lepas_anatifera_Nauplius_5 Lepas_anatifera_Nauplius_6 Manawa_staceyi_2 Manawa_staceyi_3 Manawa_staceyi_4 Manawa_staceyi_6 Nebalia_brucei_Adult Nebalia_sp._g Nebalia_sp._i Orchestia_cavimana_1 Orchestia_cavimana_2 Orchestia_cavimana_3 Orchestia_cavimana_4 Orchestia_cavimana_5 Orchestia_cavimana_6 Orchestia_cavimana_Hatchling Pleomothra_apletocheles_1 Pleomothra_apletocheles_Adult Pleomothra_apletocheles_Nauplius_1 Pleomothra_apletocheles_Nauplius_2 Pleomothra_apletocheles_Nauplius_3 Pleomothra_apletocheles_Nauplius_4 Pleomothra_apletocheles_Nauplius_5 Pleomothra_apletocheles_Nauplius_6 Pleomothra_apletocheles_Nauplius_7 Porcellio_scaber_10 Porcellio_scaber_11 Porcellio_scaber_12 Porcellio_scaber_13 Porcellio_scaber_14 Porcellio_scaber_15 Porcellio_scaber_16 Porcellio_scaber_17 Porcellio_scaber_18 Porcellio_scaber_9 Porcellio_scaber_manca_1 Porcellio_scaber_manca_2 Rehbachiella_kinnekullensis_A_1 Rehbachiella_kinnekullensis_A_14 Rehbachiella_kinnekullensis_A_2 Rehbachiella_kinnekullensis_A_3 Rehbachiella_kinnekullensis_B_17 Rehbachiella_kinnekullensis_B_4 Rehbachiella_kinnekullensis_B_8 Sacculina_carcini_Cyprid Sacculina_carcini_Nauplius_1 Sacculina_carcini_Nauplius_2 Sacculina_carcini_Nauplius_3 Sacculina_carcini_Nauplius_4 Triops_cancriformis_1 Triops_cancriformis_2 Triops_cancriformis_3 Triops_cancriformis_4 Triops_cancriformis_5 Triops_cancriformis_Adult Vargula_hilgendorfii_1 Vargula_hilgendorfii_2 Vargula_hilgendorfii_3 Vargula_hilgendorfii_4 Vargula_hilgendorfii_5 Yicaris_dianensis_1 Yicaris_dianensis_2 Yicaris_dianensis_3 Yicaris_dianensis_6 ; END; BEGIN CHARACTERS; TITLE All_semaphoronts_Data; DIMENSIONS NCHAR=146; FORMAT DATATYPE = STANDARD GAP = - MISSING = ? SYMBOLS = " 0 1 2 3 4 5 6 7 8 9 E F I J L O P Q X"; CHARSTATELABELS 1 Antennule / absent rudimentary_limb_bud present, 2 'Antennule, with a secondary annulated branch (flagellum)' / flagellum_absent present, 3 'Antennule, with a tertiary branch (flagellum)' / tertiary_flagellum_absent present, 4 'Antennule, with a scale' / absent present, 5 'Antennule, number of annulations' / not_annulated two three four_ five six seven eight_ nine ten_or_more, 6 'Antennule, extent of setation' / 'setation setae/sensilla not confined to tip' 'setae/sensillae confined to tip' No_setae, 7 'Antennule, insertion of anterior setae' / seta_absent setae_insert_medially_ setae_insert_anteriorly, 8 Distinctive_large_seta_on_antennule / large_seta_absent present, 9 Aesthetascs_on_antennule / hundreds_ one_on_every_or_almost_every_antennular_segment only_a_few_aesthetascs_situated_distally_on_the_antennule No_aesthetascs, 10 'Antennule, shape ' / 'shape elongate, tubular' as_small_buds 'as horn-like structure' with_proximal_hook as_chelicerae Sacculina_Cyprid, 11 'Antennule, positioning' / remain_separate 'basally close to each other in "''V"''-shaped pattern', 12 Antennule_with_an_attachment_disc_covered_with_cuticular_villi / absent present, 13 'Antennule with (motile) distal claw for mechanical attachment' / absent present, 14 Antenna / absent rudimentary_limb_bud present, 15 'Antennae, length of protopod' / length_of_protopod_less_than_half_total_length_of_limb more_than_half_total_length_of_limb protopod_undifferentiated, 16 'Antenna with masticatory/arthritic/gnathobasic process' / absent present, 17 'Antenna, morphology of masticatory process' / 'cluster of about 2-5 spines' divided_in_two_branches single_spine 'brush-like fringe of stiff bristles', 18 'Antenna, anterior branch of masticatory process' / 'with brush-like setae' 'with single comb-row' no_visible_setae, 19 Antennal_endopod / absent present, 20 'Antenna, endopod setation' / endopod_setation_not_distal_setation_alone only_distal_setation no_setation, 21 'Second antennae: exopod' / absent present, 22 'Antenna, number of setae on exopod' / many seven six five two None, 23 'Second antennae: basipodite' / with_small_segment_absent present, 24 Antennal_endopod_segments / endopod_not_clearly_divided_into_segments two_clear_segments three_clear_segments four_clear_segments five_segments six_segments Flagellum, 25 'Antennal exopod multi-annulated' / 'not multiannulated or paddle-shaped' multiannulated, 26 'Second antennal exopod paddle-shaped' / 'not paddle-shaped' 'exopod forms a leaf-shaped paddle ', 27 Antennal_exopod_setation_type / no_setae single_row_of_setae_on_inner_surface 'plumose/feathered', 28 'Antenna, segmentation of exopod' / segments_of_same_size_or_gradually_getting_smaller_distally 'one or two small segments proximally, followed by larger segment, again followed by three setae-bearing segments' Original_segmentation_obscurred_by_the_fusion_of_segments, 29 Antenna_with_proximal_endite / absent present, 30 Proximal_endite_on_antenna_is_enlarged_to_form_a_coxa / median_structure coxa, 31 Mandible / absent rudimentary_limb_bud present, 32 'Mandibular endopod (palp)' / absent present, 33 'Mandible, segmentation of endopod' / three_segments_ two_segments segmentation_indistinct one_segment 'none"-coxa only' four, 34 'Mandibular palp: setation of endopod segment 1' / more_than_two_setae two_setae one_seta no_setae, 35 'Mandibular palp as filter screen of >3 setae' / absent present, 36 Mandibular_exopod / absent present, 37 'Mandibular exopod multi-annulated' / 'paddle-shaped or a lamellae-bearing shaft' made_up_of_a_number_of_tubular_articles_, 38 'Mandibular exopod paddle-shaped' / 'multi-annulated or a lamellae-bearing shaft ' 'exopod forms a leaf-shaped paddle ', 39 Exopods_of_mandibular_segments_with_inwardly_directed_setae / absent row_of_setae 'plumose/feathered', 40 'Mandibular exopod with 3-2 setation pattern' / absent present, 41 Mandible_with_proximal_endite / absent present, 42 Proximal_endite_of_mandible_enlarged_to_form_a_coxa / median_structure coxa, 43 Mandibular_coxa_fused_with_basis / separate_coxa_and_basis '"normal" coxal podomere secondarily fused with basis' coxa_only, 44 Mandibular_basis_with_toothed_endite / absent present, 45 Mandibular_gnathal_edge / consisting_of_molar_and_incisor_process_ only_ellipsoid_molar_present number_of_teeth_arranged_in_a_row shovel_with_terminal_teeth 'series of 1-3 long spines' 'none (larval)' '''blade'' with one plumose seta', 46 'Mandible: row of teeth along edge of molar surface' / absent present, 47 Maxillule / absent__ rudimentary_limb_bud present, 48 Maxillular_exopod / absent present, 49 'Maxillular exopod multi-annulated' / 'paddle-shaped or a lamellae-bearing shaft' made_up_of_a_number_of_slightly_flattened_tubular_articles_, 50 'Maxillular exopod paddle-shaped' / 'multi-annulated or a lamellae-bearing shaft ' 'exopod forms a leaf-shaped paddle', 51 Maxillular_exopod_reaching_into_arthrodial_membrane / 'exopod arises from limb stem, does not reach into arthrodial membrane' basipod_not_completely_closed_sclerotised_ring, 52 Maxillular_exopod_modification_as_branchial_plate / absent present, 53 Maxillule_with_proximal_endite / absent present, 54 Maxillular_palp / absent present, 55 Maxillule_differentiated_from_thoracopods / differentiated not_differentiated, 56 'Maxillular modification (Branchiura)' / absent hooks suction_discs, 57 Maxillular_endopod_chelate_ / absent present, 58 Maxilla / absent rudimentary_limb_bud present, 59 Maxillary_exopod / absent present, 60 'Maxillary exopod multi-annulated' / 'paddle-shaped or lamellae-bearing shaft' made_up_of_a_number_of_slightly_flattened_tubular_articles_, 61 'Maxillary exopod paddle-shaped' / 'multi-annulated or a lamellae-bearing shaft ' 'exopod forms a leaf-shaped paddle', 62 Maxillary_exopod_reaching_into_limb_membrane / 'exopod arises from limb stem, does not reach into arthrodial membrane' basipod_not_completely_closed_sclerotized_ring, 63 Maxilla_with_proximal_endite / absent present, 64 Epipodite_on_maxilla / absent present, 65 Maxilla_with_tooth / absent present, 66 Maxilla_as_labium / absent present, 67 'Maxillary palp (labial palp)' / absent composed_of_3_or_4_segments 'short, unsegmented, or replaced by a row of short setae' transformed_into_a_setigerous_plate transformed_into_labella, 68 Maxillary_endopod_chelate / absent present, 69 Maxilla_differentiated_from_thoracopods / differentiated not_differentiated, 70 Labrum / absent present, 71 'Labrum, number of major posterior spines' / none one three four '>four', 72 Labrum_reduced / absent 'present (reduced)', 73 Sternum / unfused fused, 74 Paragnaths / absent present, 75 'Post-cephalic filter feeding apparatus with sternitic food groove' / absent present, 76 'Postmandibular limbs with limb base differentiated as basipod + coxa' / absent present, 77 'Protopodite of post-mandibular limbs elongate, fleshy, extended as numerous soft, setiferous endites ' / absent present, 78 'First thoracopod (sixth limb)' / absent present, 79 First_thoracopod_as_maxilliped / normal transformed_into_maxilliped, 80 Epipodite_on_maxilliped_respiratory / absent present, 81 'Second thoracopod (seventh limb)' / absent present, 82 Seventh_limb_as_cleaning_limb / absent 'present, articulated' 'present, vermiform', 83 'Third thoracopod (eighth limb)' / absent present, 84 Number_of_additional_thoracic_limbs / none one two three four five six seven eight nine_or_more, 85 'Eighth thoracopod modified into small, subspherical appendages' / absent present, 86 'Trunk limbs, dorsal lobe of exopods' / absent small long, 87 'Sixth limb, number of endites' / about_eight six five less_than_five_ 'none/undifferentiated/indistinct' one, 88 Trunk_limbs_with_lobate_endites_formed_by_folds_in_limb_bud / absent present, 89 Thoracopods_with_epipodites / absent present, 90 'Thoracopod epipodites paddle-shaped' / absent present, 91 'Trunk limb tips, developmental direction' / points_ventrally points_laterally, 92 'Intercoxal sclerites on thoracopods 2-6' / absent 'present (as couplers)', 93 Denticles_on_limbs / absent present, 94 Differentiated_pleopods / absent present, 95 Number_of_pleopods / one two 'three (pleopods 1, 2, & 3)' 'three (third to fifth pleopods missing)' four five six, 96 Uropods / absent present, 97 Gonopods / absent gonopods_formed_from_one_pair_of_limbs_in_males 'genitals in both sexes (gonopods) formed from two pairs of limbs', 98 Paired_thoracic_dorsal_setae / Absent present, 99 Annulated_caudal_filament / absent present, 100 'Furcal rami/cerci' / absent present 'present, not multi-annulated (reduced to buds with or without setae)', 101 Furcal_position / 'terminal, in line with anus' posterior_to_anus anterior_to_anus, 102 Furcal_setae / absent present, 103 Telson_shape / round laterally_depressed 'dorso-ventrally depressed', 104 Dorsal_pair_of_telsonal_setae / absent present, 105 Dorsocaudal_spine / absent present, 106 Telson_cleft / absent 'distinct, shallow to almost reaching the base', 107 Caudal_papilla / absent 'present, anteroventrally folded, derived from preanal growth zone', 108 Caudal_process / absent present, 109 Body_segmentation_externally_visible / absent present, 110 Toothed_furrows / absent type_1_with_5_lobes 'type 1 with 4 lobes (forming X-shape)', 111 Tergopleural_outgrowths / absent present, 112 Coxal_plates / absent present, 113 Number_of_somites / three five eight nine 10 11 12 13 14 15 16 18 19 20 21 22 24 25_or_more, 114 'Neck (dorsal) organ' / absent present, 115 Lattice_organs / absent present, 116 Carapace / absent present, 117 Presence_of_headshield / absent present, 118 Headshield_extension / 'develops as a simple posterior extension of the head shield to cover post-cephalic body' headshield_fuses_with_paired_carapace_anlagen_to_cover_postcephalic_limbs 'absent (does not extent to cover post-cephalic body)', 119 Cephalic_shield_continuous_with_free_trunk_dorsum / absent present, 120 Cephalic_shield_with_distinct_facetotectan_ridges / absent present, 121 Carapace_with_distinct_hinge_line / absent 'Dorsal fold or crease (carina) along the midline' 'discrete valves physically separated at the midline (hinge)', 122 Ventral_extent_of_the_carapace / Carapace_partially_covers_limbs Carapace_can_enclose_limbs_with_the_margins_of_the_carapace_meeting_ventrally 'Carapace small (larval)', 123 Dorsal_area_of_bivalved_carapace / with_dorsal_furrow with_interdorsum, 124 Incisur / absent present, 125 Doublure / absent present, 126 'Frontolateral horns/pores' / absent present, 127 Frontal_filaments / absent present, 128 Rostrum / absent present_and_fused_to_head present_and_hinged_to_head, 129 Carapace_adductor_muscles / absent present, 130 Postoral_adductor_muscle / absent present, 131 'Carapace molt retention (i.e. ''growthlines'')' / absent present, 132 Corpora_allata / absent present, 133 Wings / absent present, 134 Number_of_median_eyes / none one two three four, 135 'Naupliar eye, number of ocelli' / three four, 136 Number_of_lateral_eyes / none one two, 137 Number_of_compound_eyes / none two, 138 Internalized_compound_eyes / absent present, 139 'Head/mouth orientation' / 'prognathous, mouth directed anteroventrally' 'hypognathous, mouth directed ventrally' mouth_directed_posteriorly, 140 Gut / present absent_or_reduced, 141 Bellonci_organ / absent present, 142 Dorsal_heart_with_segmental_ostia_and_pericardial_sinus / absent present, 143 'Role of serosa (= cuticle secreting membrane) in definitive dorsal closure (formation of dorsal body wall)' / serosa_and_embryo_contribute_to_definitive_dorsal_closure 'provisional dorsal closure (serosa degenerates without contributing to definitive dorsal closure)', 144 Differentiation_of_amnion_as_provisional_dorsal_closure_of_embryo / absent present, 145 'Blastodermal cuticle (cuticular egg envelope)' / absent present, 146 'Ectoteloblasts (forming part of metanaupliar/egg-naupliar region of germ band)' / absent present_ ; MATRIX Argulus_japonicus_1 2000200033000200--1010?20022??21300-----??????20----??01?20---?0000?0?????0?010-0-00-04-0-0-00-00002?1200?001000??01110000-0000000000??010?0?????? Argulus_japonicus_2 2000200033000200--100-?3----??20--------????2-20----??01?20---?0000?0?????0?010-1011-04-0-?000-00002?1200?00?000??01110000-0000000000??010?0?????? Argulus_japonicus_3 2000200033000200--100-??----??20--------??????20----??02?20---?0000?0?????0?010-1011-04-0-?000-00002?1200100?000??01110000-0000000000??010?0?????? Argulus_japonicus_4 2000200033000200--100-?3----??20--------??????20----??02?20---?0000?0?????0?010-1011-04-0-?000-00002?1200100?000??01110000-0000000000??010?0?????? Argulus_japonicus_5 2000200033000200--100-?3----??20--------??????20----??02?20---?0000?0?????0?010-1011-04-0-?000-00000--200100?000??01110000-0000000000??010?0?????? Argulus_japonicus_6 200020003300020???1?0-??----??20--------??????20----??02?20---?0000?0?????0?010-1011-04-0-?000-00000--200100?000??01110000-0000000000??010?0?????? Argulus_japonicus_7 200020003300020???1?0-??----??20--------????2-20----??02?20---?0000?0101110?010-1011-04-0-?000-0?000--2001000000??01110000-00000000003?010?0?1???? Baccalaureus_falsiramus_Adult 200030?0200010----------------20---1001????0??2?00????0002?????000000100?00??10-101200400-?0?0-0?001?100000010009?110-0-21-0?000?10000-00-?0?????? Baccalaureus_falsiramus_Ascothoracid_larva 200050?0200012????1?1?????????2?????00?????0??2?00????0002?????000000100?00??10-101300400-?010-0?001?1000?0?10009?110-0-21-0?010??0001?00-???????? Baccalaureus_falsiramus_Nauplius_1 2000?0?0?0000200--1013100010??212-011010???05-0----------0-----------101?00--0--0-00---------0-00002?1200?010000???01000-----000??-001?00-?1?????? Baccalaureus_falsiramus_Nauplius_2 200040?0?0000200--1011121010??2101011010???05-1----------0-----------101?00--0--0-00---------0-00002?1200?010000???01000-----010??-001?00-?1?????? Baccalaureus_falsiramus_Nauplius_3 200030?0?0000200--1010121010??2101011010???05-1--------0-0-----------101?00--0--0-00---------0-00002?12001010000???01000-----010??-001?00-?1?????? Baccalaureus_falsiramus_Nauplius_4 2000?0?0?0000200--1010121010??2101011010???05-1--------0-0-----------101?00--0--0-00---------0-00002?12001010000???01000-----010??-001?00-?1?????? Baccalaureus_falsiramus_Nauplius_5 2000?0?0?0000200--1010121010??2101011010???05-1--------0-1-----------101?00--0--0-00---------0-00002?12001010000???01000-----010??-001?00-?1?????? Baccalaureus_falsiramus_Nauplius_6 200030?0?0001200--1010121010??2101011010???0??1--------0-1-----------101?00--0--0-00---------0-00002?12001010000???01000-----010??-001?00-?1?????? Bredocaris_admirabilis_1 200090?1?0000200--1010??10101121000110101100??11-----0-000-----------100??0000--0-00--------10-00001010000010000?10010?0----000010-?00-010???????? Bredocaris_admirabilis_2 200090?1?0000200--1010??101011210001101011003?21100010-000-----------100??0000--0-00-------010-00001010000010000?10010?0----000010-?00-010???????? Bredocaris_admirabilis_3 200090?1?0000200--1010??101011210001101011003?211000100002??????-??-?100??00010-1000-0?00-?010-00001010000010000?10010?0----000010-?00-010???????? Bredocaris_admirabilis_4 200090?1?0000200--1010??101011210001101011003?21100010000211001000001100??00010-1011-0?00-?010-00001010000010000?10010?0----000010-?00-010???????? Bredocaris_admirabilis_5 200090?1?0000200--1010??101011210001101011003?21100010000211001000001100??00010-101?-0?00-?010-00001010000010000?10010?0----000010-?00-010???????? Bredocaris_admirabilis_6 200090?1?0000200--10101?1010112100011010110030211000100002110010000011001100010-1017-0000-?010-00001010000010000?10010?0----000010-?00-010???????? Darwinula_stevensoni_1 2000400030000200--111512000211210000----1100300----------0-----------1????0000--0-00------?-00-0000120?000000000??010-0-21-010001?000??00-2000???? Darwinula_stevensoni_2 2000401020000200--10141200021121000100001100301--------000-----------1????0000--0-00------?-00-0000121?000000000??010-0-21-010001?000??00-2000???? Darwinula_stevensoni_3 2000401020000200--10141200021121000100001100302100?1?0-000-----------1????0000--0-00------?-00-0000121?000000000??010-0-21-010001?000??00-2000???? Darwinula_stevensoni_4 2000401020000200--10141200021121001100001100302100?1?10001-----------1????0000--0-00------?--0-0000121?000000000??010-0-21-010001?000??00-2000???? Darwinula_stevensoni_5 2000401020000200--10141200021121001100001100302100?1?10002100??00000-1????00010-0-00---00-?-00-0000121?000000000??010-0-21-010001?000??00-2000???? Darwinula_stevensoni_6 2000401020000200--10141300021121001100001100302100?1?10002100??0000011????00010-1000---00-?-00-0000121?000000000??010-0-21-010001?000??00-2000???? Darwinula_stevensoni_7 2000401020000200--10141300021121001100001100302100?1?10002100??0000011????00010-1000---00-?-00-0000121?000000000??010-0-21-010001?000??00-2000???? Darwinula_stevensoni_8 2000401020000200--10141300021121001100001100302100?1?10002100??0000011????00010-1000---00-?-00-0000121?000000000??010-0-21-010001?000??00-2000???? Darwinula_stevensoni_9 2000401020000200--10141300021121001100001100302100?1?10002100??0000011????00010-1000---00-?-00-0100121?000000000??010-0-21-010001?0003?00-2000???? Derocheilocaris_remanei_1 20007000?0000201101010?2101011210?0110101100??20----1?-000-----------100??0?00--0-00---------0-00002?100100011002?0010-0-----00000-00??00-???????? Derocheilocaris_remanei_2 20007000?0000201101010?2101011210?0110101100??20----1?-000-----------100??0?00--0-00---------0-00001?100000011004?0010-0-----00000-00??00-???????? Derocheilocaris_remanei_3 20007000?0000201101010?2101011210?0110101100??20----1?-000-----------1?0??0?00--0-00---------0-00001?10000001100??0010-0-----00000-00??00-???????? Derocheilocaris_remanei_4 20007000?0000201101010?2101011210?0110101100??20----1??001------0000-1?00?0?00--0-01---------0-00001?100000011007?0010-0-----00000-00??00-???????? Derocheilocaris_remanei_5 20007000?0000201101010?2101011210?0110101100??20----1?0001------0000-1?01?0?01101011---------0-00001?10000011?008?0010-0-----00000-00??00-???????? Derocheilocaris_remanei_6 20007000?0000201101010?2101011210?0110101100??20----1?00020---10000001?01?0?01101012-0300-?000-00001?10000011?008?0010-0-----00000-00??00-???????? Derocheilocaris_remanei_7 20007000?0000200--1010?2101011210?0110101100??20----1?00020---10000001?01?0?01101012-0300-?000-00001?100000112008?0010-0-----00000-00??00-???????? Derocheilocaris_remanei_8 20007000?0000200--1010?2101011210?0110101100??20----1?00020---10000001?01?0?01101012-0300-?000-00001?100000112008?0010-0-----00000-00??00-???????? Derocheilocaris_remanei_9 2000700020000200--1010?2101011210201101011002-20----1?00020---1000000100110?01101012-0300-?000-0?001?100000112008?0010-0-----00000-004?00-2?1????? Eubranchipus_grubii_1 20000100300002112011100010100-210100--0-1100??0---------00---------0-100?00000--0-00-0-00---?0-00?010000000010008100120------000-0-00100??2??????? Eubranchipus_grubii_2 20000100300002112011100010100-210100--0-1100??10----1000010---1000000100?110110010140031110000-00101010000001000I100120------000-0-00100102??????? Eubranchipus_grubii_3 20000100300002111011100010100-210100--0-11001120----1000010---1000000100?110110010160011110000-02101010000001000J100120------000-0-001001020?????? Eubranchipus_grubii_Adult 20000100?0000210--0-150-00020-204--0--0-112-1120---01000010---1000000100?11011011018001111?000-02101010000001000Q100120------000-0-001001020?1???? Glomeris_marginata_Adult 2000??00300000----------------204--0----???00-20----?100020---?00??00100??0?010-10190-400-?000-0?000--000?001000F00012-------0000?-000-21000010010 Hesslandona_angustata_1 2000?100?10002?1??101?1110101121110110101100??21100010-000-----------100110?00--0-00------?-?0-0?000--0000000000?001??0021101000??0?02?00-???????? Hesslandona_angustata_2 2000???0?10002?1??101?111010112111011010111-??21100010-000-----------100110000--0-00------?-?0-0?000--0000000000?001??0021101000??0?02?00-???????? Hesslandona_unisulcata_6 200070?0?10002?10-101?111010112101011010111-2-211000101002110010000011001100010-1000---00-?0?0-0?001--0000000000?001??0021101000??0?02?00-2??????? Hutchinsoniella_macracantha_1 20005010200002010-10100110001121220110001100201101?010-001---??0-000-100??0010--0-00------?-00-000010120010010102?0010-0----0000?0-000-00-2?0????? Hutchinsoniella_macracantha_10 20005010200002010-10100110001121220110001100202101?0100002101?1100001100??00110-1011-01?0-?000-00001012001001010P?0010-0----0000?0-000-00-2?0????? Hutchinsoniella_macracantha_11 2000501020000200--101001100011212200----1100202101?0100002101?1100001100??00110-1011-01?0-?000-00001012001001010Q?0010-0----0000?0-000-00-2?0????? Hutchinsoniella_macracantha_12 2000501020000200--101001100011212200----1100202101?0100002101?1100001100??00110-1011-01?0-?000-00001012001001010Q?0010-0----0000?0-000-00-2?0????? Hutchinsoniella_macracantha_13 2000501020000200--101001100011212200----1100202101?0100002101?1100001100??00110-1012-01?0-?000-00001012001001010Q?0010-0----0000?0-000-00-2?0????? Hutchinsoniella_macracantha_14 2000501020000200--10100110001120---0----1100202101?0100002101?1100001100??00110-1013-01?0-?000-00001012001001010Q?0010-0----0000?0-000-00-2?0????? Hutchinsoniella_macracantha_15 2000501020000200--10100110001120---0----1100202101?0100002101?1100001100??00110-1013-01?0-?000-00001012001001010Q?0010-0----0000?0-000-00-2?0????? Hutchinsoniella_macracantha_16 2000501020000200--10100110001120---0----1100202101?0100002101?1100001100??00110-1014-01?0-?000-00001012001001010Q?0010-0----0000?0-000-00-2?0????? Hutchinsoniella_macracantha_17 2000501020000200--10100110001120---0----1100202101?0100002101?1100001100??00110-1014-01?0-?000-0?001012001001010Q?0010-0----0000?0-000-00-2?0????? Hutchinsoniella_macracantha_18 2000501020000200--10100110001120---0----1100202101?0100002101?1100001100??00110-1015101?0-?000-0?001012001001010Q?0010-0----0000?0-000-00-2?0????? Hutchinsoniella_macracantha_2 20005010200002010-10100110001121220110001100202101?010-001101??00000-100??0010--0-00------?-00-000010120010010104?0010-0----0000?0-000-00-2?0????? Hutchinsoniella_macracantha_3 20005010200002010-10100110001121220110001100202101?0100002101?1100001100??00110-0-00-01?0-?-00-000010120010010106?0010-0----0000?0-000-00-2?0????? Hutchinsoniella_macracantha_4 20005010200002010-10100110001121220110001100202101?0100002101?1100001100??00110-1000-01?0-?000-000010120010010108?0010-0----0000?0-000-00-2?0????? Hutchinsoniella_macracantha_5 20005010200002010-10100110001121220110001100202101?0100002101?1100001100??00110-1000-01?0-?000-00001012001001010E?0010-0----0000?0-000-00-2?0????? Hutchinsoniella_macracantha_6 20005010200002010-10100110001121220110001100202101?0100002101?1100001100??00110-1000-01?0-?000-00001012001001010I?0010-0----0000?0-000-00-2?0????? Hutchinsoniella_macracantha_7 20005010200002010-10100110001121220110001100202101?0100002101?1100001100??00110-1010-01?0-?000-00001012001001010J?0010-0----0000?0-000-00-2?0????? Hutchinsoniella_macracantha_8 20005010200002010-10100110001121220110001100202101?0100002101?1100001100??00110-1010-01?0-?000-00001012001001010L?0010-0----0000?0-000-00-2?0????? Hutchinsoniella_macracantha_9 20005010200002010-10100110001121220110001100202101?0100002101?1100001100??00110-1010-01?0-?000-00001012001001010O?0010-0----0000?0-000-00-2?0????? Hutchinsoniella_macracantha_Adult 2000501020000200--10100110001120---0----1100202101?0100002101?1100001100??00110-1015101?0-?000-0?001012001001010Q00010-0----000010-000-00-2001???? Klausmuelleria_salopensis 2000???0?10002?10?1?1?12101011210?01101?1100??21100010-000-----------100110000--0-00---????-?0-0?00????00?000000?001??0011-01000??000??00-???????? Labidocera_aestiva_Adult 20009000?0?002?0--10101110111121300100?0???03-2100?0?10002?????000000?????0?011-1013-0400-?100-0?001010000001000?10010-0-----00000-003?00-20?1???? Labidocera_aestiva_copepodid_1 20008000?0?002?0--1010111011112130010000???03-2100?0?100020---?000000?????0?011-1010-0400-??00-000010100000010003?0010-0-----00000-00??0??20?????? Labidocera_aestiva_copepodid_2 20008000?0?002?0--1010111011112130010000???03-2100?0?100020---?000000?????0?011-1011-0400-??00-000010100000010004?0010-0-----00000-00??0??20?????? Labidocera_aestiva_copepodid_3 20009000?0?002?0--1010111011112130010000???03-2100?0?100020---?000000?????0?011-1012-0400-??00-000010100000010004?0010-0-----00000-00??0??20?????? Labidocera_aestiva_copepodid_4 20009100?0?002?0--1010111011112130010000???03-2100?0?100020---?000000?????0?011-1013-0400-??00-000010100000010004?0010-0-----00000-00??0??20?????? Labidocera_aestiva_copepodid_5 20009000?0?002?0--1010111011112130010000???03-2100?0?100020---?000000?????0?011-1013-0400-??00-000010100000010004?0010-0-----00000-00??0??20?????? Labidocera_aestiva_Nauplius_1 2000200030?002?12-1012?010100-2120011010???05-0----------0-----------140??0--0--0-00------?--0-0000101000?000000??00??-0-----00000-00??0??20??000? Labidocera_aestiva_Nauplius_2 2000200030?002?12-1012?010100-2120011010???05-0----------0-----------140??0--0--0-00------?--0-0000101000?010000??00??-0-----00000-00??0??20?????? Labidocera_aestiva_Nauplius_3 2000200030?002?10-1011?01010102120011010???05-0----------0-----------140??0--0--0-00------?--0-0000101000?010000??00??-0-----00000-00??0??20?????? Labidocera_aestiva_Nauplius_4 2000200030?002?10-1010?01010102110011010???06-1----------0-----------140??0--0--0-00------?--0-0000101000?010000??00??-0-----00000-00??0??20?????? Labidocera_aestiva_Nauplius_5 2000200030?002?10-1010?01010102110011010???06-1----------0-----------140??0--0--0-00------?--0-0000101000?010000??00??-0-----00000-00??0??20?????? Labidocera_aestiva_Nauplius_6 2000200030?002?10-1010?01010112110011010???06-1----------1-----------140??0--0--0-00------?--0-00001010001010000??00??-0-----00000-00??0??20?????? Lepas_anatifera_Cyprid 20002???200102?0--1?1???1020??2????1102????0??2110????100211???000?011???00??10-0-00-???0-?-?0-000010100010?1000301011?0-----00011-00??0102000???? Lepas_anatifera_Nauplius_1 2000000030?00200--1013100010??212001101????04?0---------?0---------?-100?00--0--0-00------?--0-00001?0?000010000?0?01000-----110??-003?00-2?0????? Lepas_anatifera_Nauplius_2 20003000?0?002010-1011101020??211001102?11004?0----------0-----------130?00--0--0-00------?--0-00001?0?000010000?0?01000-----110??-003?00-2?0????? Lepas_anatifera_Nauplius_3 20003??0?0?00201??101?1?10?0??21??0110??1100??0----------0-----------140?00--0--0-00------?--0-00001?0?000010000?0?01000-----110??-003?00-2?0????? Lepas_anatifera_Nauplius_4 20003??0?0?00201??101?1?10?0??21??0110??1100??0----------0-----------140?00--0--0-00------?--0-00001???000010000?0?01000-----110??-003?00-2?0????? Lepas_anatifera_Nauplius_5 20004??0?0?002013-101?1?10?0??21??0110??1100??0----------0-----------140?00--0--0-00------?--0-00001?0?000010000?0?01000-----110??-003?00-2?0????? Lepas_anatifera_Nauplius_6 20004000?0?102013-1010131020??210001102?11004?10----?0-0-0-----------140?00?-0--0-00------?--0-00001?0?000010000?0?01000-----110??-003?00-2?0????? Manawa_staceyi_2 200030?0?00002?0--1?1??400????210?01???0???0??1----------1-----------101??0?-0--0-00---------0-00000--?00?00?000??010-0-12-00000??0000-00-2??????? Manawa_staceyi_3 200030?0?00002?0--1?1??400????210001???0???0??2????0??0001-----------10???0?00--0-00---------0-00000--?00?00?000??010-0-12-00000??0000-00-2??????? Manawa_staceyi_4 200030?0?00002?0--1?1??400????210001???0???0??2????0??0002?????00000110???0?010-0-00-0400-?-00-00000--?00000?000??010-0-20-00000??0000-00-2??????? Manawa_staceyi_6 200030?0?00002?0--1?1??4001???210001???011002-2????0?100021????000001100??00010-1010-0400-?000-0100121?0000010002?010-0-21-000001?0000-00-200????? Nebalia_brucei_Adult 210190?0?0000200--100-06----0-211100----111-0-20----11000210101000?001?0??1?110-1015014010?001600001010000001000L?010-0-?0-00002100000-010?0?1???? Nebalia_sp._g 2000020031000220--?2?50???0?0-202--?----0-?05-10---000?0010---000000?101?000010-1015004?0-1001200001000000001000I?000--------00110-000-00-2??????? Nebalia_sp._i 2000020030000220--?2?50???0?0-212-00----???0??20----?10001??????000001?0??0?010-1015004?0-?001400001000000001000I?010-0-?2?00002100000-0102??????? Orchestia_cavimana_1 1--------1---1----------------1---------------0----------0-----------0--000--0--0-00---------0-00000---00-100000?1000--------000??-000-0???0?????0 Orchestia_cavimana_2 1--------1---1----------------1---------------1----------1-----------0--000--10-101500400-1000-00000---00-000000?1000--------000??-000-0???0?????0 Orchestia_cavimana_3 20001200300002?0--120-?3----??202--0----???05-1-------0--1----------0100010--10-101500300-1001600000---00-000001?1000--------000??-000-0???0?????0 Orchestia_cavimana_4 20004200300002?0--120-?5----??202--0----???05-20----?100020---?000000100110?0110101500300-?001610000--0000001001?1000--------000??-000-0??20?????0 Orchestia_cavimana_5 20004200300002?0--120-?5----??201--0----???05-20----?100020---?000000100110?0110101500300-?001610000--0000001001?10012-0-----000??-000-0??20?????0 Orchestia_cavimana_6 20004200300002?0--120-?5----??201--0----???00-20----?100020---?000000100110?0110101500300-?001610000--0000001001?10012-0-----000??-000-0??20?????0 Orchestia_cavimana_Hatchling 20004000?00002?0--100-?5----??201--0----???00-20----?000020---?000000100110?0110101500300-?00161?000--0000001001?10012-0-----000??-000-01020?????0 Pleomothra_apletocheles_1 2100?000?00002?0--1010?200??1121??01???0??????20----??00120---?000?00?????00011-101800?????0?0-00001??10000010008?0010-0-----00000-000-00-20?????- Pleomothra_apletocheles_Adult 2100900010000200--1010?201101120---1???011000120----1000120---1000?101?01100011-101900?????0?0-0?001??1000001000Q00010-0-----00000-000-00-20?1???- Pleomothra_apletocheles_Nauplius_1 2000??00?00002????1?1?????????2???????????????0----------0-----------0--??0--0--0-00------0-10-00000--?0000000000?00??-?-----00000-000-00-21?????0 Pleomothra_apletocheles_Nauplius_2 2000??00?00002????1?1?????????2???????????????0----------0-----------0--??0--0--0-00------0-10-00000--?0000000002?00??-?-----00000-000-00-21?????0 Pleomothra_apletocheles_Nauplius_3 2000??00?00002????1?1?????????21??01???0??????1-----??-0-1--------?--0--??0--0--0-00------0-10-00000--?0000000003?00??-?-----00000-000-00-21?????0 Pleomothra_apletocheles_Nauplius_4 2000??00?00002????1?1?????????21??01???0??????1-----??-0-1--------?--0--??0--0--0-00------0-10-00000--?0000000004?00??-?-----00000-000-00-21?????0 Pleomothra_apletocheles_Nauplius_5 2000??00?00002????1?1?????????21??01???0??????1-----??-0-1--------?--0--??0--0--0-00------0-10-00000--?0000000005?00??-?-----00000-000-00-21?????0 Pleomothra_apletocheles_Nauplius_6 2000??00?00002????1?1?????????21??01???0??????1-----??-0-1--------?--0--??0--0--0-00------0-10-00000--?0000000006?00??-?-----00000-000-00-21?????0 Pleomothra_apletocheles_Nauplius_7 2000??00?00002????1?1?????????21??01???0??????1-----??-0-1--------?--0--??0--0--0-00------0-10-00000--?0000000007?00??-?-----00000-000-00-21?????0 Porcellio_scaber_10 1--------1---1----------------1---------------1----------1-----------0--?00--1--0-00------0-00-00000---00-000000?0000--------000??-000-00-?0?????1 Porcellio_scaber_11 1--------1---1----------------1---------------1-------0--1----------00--000--10-1014------0-00-00000---00-00100070000--------000??-000-00-?0?????0 Porcellio_scaber_12 1--------1---1----------------1---------------1-------0--1----------0100000--10-1014------0-01000000---00-001000F0000--------000??-000-00-?0?????0 Porcellio_scaber_13 1--------1---2?0------?-----??1---------------1-------0--1----------0100010--10-1015------0-01600000--0000001000F0000--------000??-000-00-?0?????0 Porcellio_scaber_14 20002200310002?0--120-?5----??1---------------2??????00002?????000000100110?011010150040100001600000--0000001000F00012-0-----000??-000-00-?0?????0 Porcellio_scaber_15 20002200310002?0--120-?5----??1---------------20----?000020---?000000100110?01101015005010?001600000--0000001001?10012-0-----000??-000-00-?0?????0 Porcellio_scaber_16 20002200310002?0--120-?5----??1---------------20----?000020---?000000100110?0110101500?010?001410000--0000001001?10012-0-----000??-000-00-?0?????0 Porcellio_scaber_17 20002200310002?0--120-?5----??1---------------20----?000020---?000000100110?0110101500?010?001410000--0000001001?10012-0-----000??-000-010?0?1???0 Porcellio_scaber_18 20002200310002?0--120-?5----??1---------------20----?000020---?000000100110?0110101500?010?001410000--0000001001?10012-0-----000??-000-010?0?1???0 Porcellio_scaber_9 1--------1---1----------------1---------------0----------0-----------0--?00--0--0-00------0--0-00000---00-00000020000--------000??-000-00-?0?????1 Porcellio_scaber_manca_1 2000?200310002?0--110-?5----??202--0----???00-20----?000020---?000000100110?01101015005010?001410000--0000001001?10012-0-----000??-000-010?0?1???0 Porcellio_scaber_manca_2 2000?200310002?0--110-?5----??202--0----???00-20----?000020---?000000100110?0110101500?010?001410000--0000001001?10012-0-----000??-000-010?0?1???0 Rehbachiella_kinnekullensis_A_1 2000???1??0002??????????????0-2?????????11014-0----------0-----------100100--0--0-00---------0-0000200001000000011001?-0-----000?0-00??0102??????? Rehbachiella_kinnekullensis_A_14 20009??0?00002????????????????2?????????11?02-2101001?100210101000001100?11?110-101700000-?000-00001012000001000E10010-0-----000?0-00??0102??????? Rehbachiella_kinnekullensis_A_2 20009??0?00002012?10100310100-215001101?11014-0----------0-----------100100--0--0-00---------0-0000200001000000011001?-0-----000?0-00??0102??????? Rehbachiella_kinnekullensis_A_3 2000???0???002????????????????????????????????11??00?0?000-----------100100000--0-00---------0-0000?????1?00?000?1001?-0-----000?0-00??0102??????? Rehbachiella_kinnekullensis_B_17 20009??0?00002????????????????2?????????11?02-2101001?1002?0101000001100?11?110-101900000-?000-00001012000001000I10010-0-----000?0-00??0102??????? Rehbachiella_kinnekullensis_B_4 200090?0?00002010-10110310100-215001101?11002-21010001-0011??0000000-100??01?0--0-00---------0-00001010000001000?1001?-0-----000?0-00??0102??????? Rehbachiella_kinnekullensis_B_8 200090?0?00002010-10100310100-215101101?11002-2101001110021??010000011001111110?101100?0???000-00001010000001000410010-0-----000?0-00??0102??????? Sacculina_carcini_Cyprid 2000?00025?100----------------0------------0--0----------0-----------????00--10-101300400-?0?0-00001?0?00?0??000??1011-0-----10011-001?00-???????? Sacculina_carcini_Nauplius_1 2000?100?0?002?0--1?1???10????21?--110?0???05-0----------0-----------1???00--0--0-00---------0-00001?00000000000???010-0-----110??-00??00-???????? Sacculina_carcini_Nauplius_2 2000?100?0?002?0--1?1???10????21?--110?0???05-0----------0-----------1???00--0--0-00---------0-00001?00000000000???010-0-----110??-00??00-???????? Sacculina_carcini_Nauplius_3 2000?100?0?002?0--1?1???10????21?--110?0???05-0----------0-----------1???00--0--0-00---------0-00001?00000010000???010-0-----110??-00??00-???????? Sacculina_carcini_Nauplius_4 2000?100?0?002?0--1?1???10????21?--110?0???05-0----------0-----------1?1?00--0--0-00---------0-00001?00000010000???010-0-----110??-00??00-???????? Triops_cancriformis_1 20000100?000021122111300101011211100----11005-0---------00---------0-100100--0--0-00------?--0-00000--00000010002101110002-00000?0000110??2??????? Triops_cancriformis_2 20000100?000021120111300101011211100----1100??10----100000---------0-100?000010-10130?21??0000-000010021000010004101110000-00000?0000110112??????? Triops_cancriformis_3 20000100?000021110111300101011211100----1100??20----100000---------0-100?010110-10160?21??0000-000010021000010006101110000-00000?0000110112??????? Triops_cancriformis_4 20000100?000021110111300101011211100----11002-20----100000---------0-100?110110-10190?21??0000-00001002100001000J1011100?0-00000?0000110112??????? Triops_cancriformis_5 20000100?000021120111300101011213100----11002-20----100000---------0-100?110110-10190?21??0000-00001002100001000O1011100?0-00000?0000110112??????? Triops_cancriformis_Adult 20000100?0000{0 2}20--????00??-20-204--0----11202-20----100000---------0-100?110110-1019012111?000-00001002100001000Q101110010-00000100001101120?1???? Vargula_hilgendorfii_1 2000501020000210--11101210001121000100001100?02100?0??0002?00??110000100??00010-0-00--300-?-00-0000110?0000000003?010-0-21-110001?0001?01020?????? Vargula_hilgendorfii_2 2000501020000210--10101210001121000100001100?02100?0??0002?00??110000100??00010-1000--300-?000-0000110?000000000??010-0-21-110001?0001?01020?????? Vargula_hilgendorfii_3 2000501020000210--10101210001121000100001100?02100?0??0002?00??110000100??00010-1200--3010?000-0000110?000000000??010-0-21-110001?0001?01020?????? Vargula_hilgendorfii_4 2000?01020000210--10101210001121000100001100?02100?0??0002?00??110000100??00010-1200--3010?000-0000110?000000000??010-0-21-110001?0001?01020?????? Vargula_hilgendorfii_5 2000701020000210--10101210001121000100001100?02100?0??0002?00??110000100??00010-1200--3010?000-0100110?000000000??010-0-21-110001?0001?0102011???? Yicaris_dianensis_1 20003?00?10002????1???1?1010??20---110101100??210100100001?0101100000???110010--0-00---?--?-00-0?000--0000?01000??0010?0----0000-?-?0??010???????? Yicaris_dianensis_2 2000?????????2????1??01?10101120---110101100??210100100002?0101100000???1100110-1000-00?10?000-0?001?10000?01000??0010?0----0000-?-?0??010???????? Yicaris_dianensis_3 2000?????????2????1??01?10101120---110101100??210100100002?01011000001001100110-1014-00?10?000-0?001?10000?01000??0010?0----0000-?-?0??010???????? Yicaris_dianensis_6 2????????????2????????????????2???????????????2??????????2????????????????00110-1014-00?10?000-0?001?10000?01000??0010?0----0000-?-?0??010???????? ; END; BEGIN TREES; Title All_sem_molec; LINK Taxa = Taxa; TRANSLATE 1 Argulus_japonicus_1, 2 Argulus_japonicus_2, 3 Argulus_japonicus_3, 4 Argulus_japonicus_4, 5 Argulus_japonicus_5, 6 Argulus_japonicus_6, 7 Argulus_japonicus_7, 8 Baccalaureus_falsiramus_Adult, 9 Baccalaureus_falsiramus_Ascothoracid_larva, 10 Baccalaureus_falsiramus_Nauplius_1, 11 Baccalaureus_falsiramus_Nauplius_2, 12 Baccalaureus_falsiramus_Nauplius_3, 13 Baccalaureus_falsiramus_Nauplius_4, 14 Baccalaureus_falsiramus_Nauplius_5, 15 Baccalaureus_falsiramus_Nauplius_6, 16 Bredocaris_admirabilis_1, 17 Bredocaris_admirabilis_2, 18 Bredocaris_admirabilis_3, 19 Bredocaris_admirabilis_4, 20 Bredocaris_admirabilis_5, 21 Bredocaris_admirabilis_6, 22 Darwinula_stevensoni_1, 23 Darwinula_stevensoni_2, 24 Darwinula_stevensoni_3, 25 Darwinula_stevensoni_4, 26 Darwinula_stevensoni_5, 27 Darwinula_stevensoni_6, 28 Darwinula_stevensoni_7, 29 Darwinula_stevensoni_8, 30 Darwinula_stevensoni_9, 31 Derocheilocaris_remanei_1, 32 Derocheilocaris_remanei_2, 33 Derocheilocaris_remanei_3, 34 Derocheilocaris_remanei_4, 35 Derocheilocaris_remanei_5, 36 Derocheilocaris_remanei_6, 37 Derocheilocaris_remanei_7, 38 Derocheilocaris_remanei_8, 39 Derocheilocaris_remanei_9, 40 Eubranchipus_grubii_1, 41 Eubranchipus_grubii_2, 42 Eubranchipus_grubii_3, 43 Eubranchipus_grubii_Adult, 44 Glomeris_marginata_Adult, 45 Hesslandona_angustata_1, 46 Hesslandona_angustata_2, 47 Hesslandona_unisulcata_6, 48 Hutchinsoniella_macracantha_1, 49 Hutchinsoniella_macracantha_10, 50 Hutchinsoniella_macracantha_11, 51 Hutchinsoniella_macracantha_12, 52 Hutchinsoniella_macracantha_13, 53 Hutchinsoniella_macracantha_14, 54 Hutchinsoniella_macracantha_15, 55 Hutchinsoniella_macracantha_16, 56 Hutchinsoniella_macracantha_17, 57 Hutchinsoniella_macracantha_18, 58 Hutchinsoniella_macracantha_2, 59 Hutchinsoniella_macracantha_3, 60 Hutchinsoniella_macracantha_4, 61 Hutchinsoniella_macracantha_5, 62 Hutchinsoniella_macracantha_6, 63 Hutchinsoniella_macracantha_7, 64 Hutchinsoniella_macracantha_8, 65 Hutchinsoniella_macracantha_9, 66 Hutchinsoniella_macracantha_Adult, 67 Klausmuelleria_salopensis, 68 Labidocera_aestiva_Adult, 69 Labidocera_aestiva_copepodid_1, 70 Labidocera_aestiva_copepodid_2, 71 Labidocera_aestiva_copepodid_3, 72 Labidocera_aestiva_copepodid_4, 73 Labidocera_aestiva_copepodid_5, 74 Labidocera_aestiva_Nauplius_1, 75 Labidocera_aestiva_Nauplius_2, 76 Labidocera_aestiva_Nauplius_3, 77 Labidocera_aestiva_Nauplius_4, 78 Labidocera_aestiva_Nauplius_5, 79 Labidocera_aestiva_Nauplius_6, 80 Lepas_anatifera_Cyprid, 81 Lepas_anatifera_Nauplius_1, 82 Lepas_anatifera_Nauplius_2, 83 Lepas_anatifera_Nauplius_3, 84 Lepas_anatifera_Nauplius_4, 85 Lepas_anatifera_Nauplius_5, 86 Lepas_anatifera_Nauplius_6, 87 Manawa_staceyi_2, 88 Manawa_staceyi_3, 89 Manawa_staceyi_4, 90 Manawa_staceyi_6, 91 Nebalia_brucei_Adult, 92 Nebalia_sp._g, 93 Nebalia_sp._i, 94 Orchestia_cavimana_1, 95 Orchestia_cavimana_2, 96 Orchestia_cavimana_3, 97 Orchestia_cavimana_4, 98 Orchestia_cavimana_5, 99 Orchestia_cavimana_6, 100 Orchestia_cavimana_Hatchling, 101 Pleomothra_apletocheles_1, 102 Pleomothra_apletocheles_Adult, 103 Pleomothra_apletocheles_Nauplius_1, 104 Pleomothra_apletocheles_Nauplius_2, 105 Pleomothra_apletocheles_Nauplius_3, 106 Pleomothra_apletocheles_Nauplius_4, 107 Pleomothra_apletocheles_Nauplius_5, 108 Pleomothra_apletocheles_Nauplius_6, 109 Pleomothra_apletocheles_Nauplius_7, 110 Porcellio_scaber_10, 111 Porcellio_scaber_11, 112 Porcellio_scaber_12, 113 Porcellio_scaber_13, 114 Porcellio_scaber_14, 115 Porcellio_scaber_15, 116 Porcellio_scaber_16, 117 Porcellio_scaber_17, 118 Porcellio_scaber_18, 119 Porcellio_scaber_9, 120 Porcellio_scaber_manca_1, 121 Porcellio_scaber_manca_2, 122 Rehbachiella_kinnekullensis_A_1, 123 Rehbachiella_kinnekullensis_A_14, 124 Rehbachiella_kinnekullensis_A_2, 125 Rehbachiella_kinnekullensis_A_3, 126 Rehbachiella_kinnekullensis_B_17, 127 Rehbachiella_kinnekullensis_B_4, 128 Rehbachiella_kinnekullensis_B_8, 129 Sacculina_carcini_Cyprid, 130 Sacculina_carcini_Nauplius_1, 131 Sacculina_carcini_Nauplius_2, 132 Sacculina_carcini_Nauplius_3, 133 Sacculina_carcini_Nauplius_4, 134 Triops_cancriformis_1, 135 Triops_cancriformis_2, 136 Triops_cancriformis_3, 137 Triops_cancriformis_4, 138 Triops_cancriformis_5, 139 Triops_cancriformis_Adult, 140 Vargula_hilgendorfii_1, 141 Vargula_hilgendorfii_2, 142 Vargula_hilgendorfii_3, 143 Vargula_hilgendorfii_4, 144 Vargula_hilgendorfii_5, 145 Yicaris_dianensis_1, 146 Yicaris_dianensis_2, 147 Yicaris_dianensis_3, 148 Yicaris_dianensis_6; TREE equal_traditional = (44,(((19,20,21,(18,(16,17,((47,67,(45,46)45)69,((((76,(74,75)67,(77,78,79)41)40,(80,129)3)30,(10,(11,12,13,(14,15)60)82)63)31,((81,(82,83,84,(85,86)50)38)17,(132,133,(130,131)51)46)42)23)29)31)32)29,((69,(70,71,72,73,68)24)79,(9,8)81)21)16,(((((127,((122,124)39,(103,104,(105,106,107,108,109)35)75)34)40,(128,(123,126)50)55)43,(((125,40,134)49,((41,(42,43)56)78,((135,136)3,(137,138,139)10)60)4)40,(63,64,65,(60,61,62,(59,(48,58)53)6)6,(49,(50,51,52,(55,56,(57,66,(53,54)16)1)62)72)42)75)45)1,((145,146)6,(147,148)52)28)6,(101,102)98)1,((((1,(2,(3,4,(5,6,7)56)58)95)91,((90,((140,(141,(142,143,144)63)13)99,((22,23,24,25)5,(26,(27,28,29,30)67)10)61)51)29,(89,(87,88)87)49)15)0,(31,32,33,34)65)24,(37,38,39,(35,36)9)50)7,(91,(93,((((92,96)4,(113,(112,(111,(95,(110,(94,119)52)79)43)37)53)57)7,(114,(115,(116,(117,118,(120,121)66)3)16)7)36)36,(97,(98,99,100)6)5)27)52)72)100); TREE equal_NT = (44,(((((19,20,21,(18,(80,(16,17)24)42)42)33,(127,(128,(123,126)52)53)18)38,((71,72,73,68,(69,70)42)80,(129,(9,8)66)3)20)10,(91,(93,(92,96,(113,(112,(111,(95,(110,(94,119)34)59)19)14)27)33,(97,98,99,100,114,115,116,117,118,(120,121)64)25)6)19)37)10,(((((47,(67,(45,46)41)2)77,((140,141,(142,143,144)56)99,((26,(25,(22,23,24)30)8)2,(27,28,29,30)64)63)48)8,(90,(89,(87,88)63)32)18)1,(37,38,39,(35,36)27)71)12,(1,(2,(3,4,(5,6,7)51)52)89)86)12,(((((((122,124,125,40,134,(41,(42,43)30)68,(135,136,137,138,139)55)0,(130,131,(132,133,(81,(82,83,84,(85,86)52)36)17)40)44)15,((76,(74,75)64,(77,78,79)35)37,(10,(11,12,13,(14,15)53)73)48)5)6,(103,104,(105,106,107,108,109)42)36)8,(31,32,33,34)56)13,((145,146,(147,148)47)36,(59,60,61,62,63,64,65,(48,58)80,(49,(50,51,52,(53,54,55,56,57,66)46)44)9)96)2)13,(101,102)80)13)100); TREE implied1_traditional = (44,((((((16,17,(18,(19,20,21)47)45)70,((79,(77,78,(76,(74,75)67)21)2)51,(80,(10,((11,12,13,(14,(15,(9,8)58)28)4)16,((81,(82,83,84,(85,(86,129)47)51)50)51,(132,133,(130,131)48)44)30)51)44)23)7)12,(45,67,(46,47)32)77)4,(((91,(92,93)13)11,(96,(115,((100,(99,(97,98)11)26)37,((116,117,118)16,(120,121)62)41)45)34)44)25,(114,(113,(112,(111,((94,95)23,(119,110)53)49)67)48)54)20)43)15,(69,70,71,72,73,68)92)16,((((((122,124,125)29,(103,104,(105,106,107,108,109)30)91)18,(40,((41,(42,43)63)88,(134,(135,(136,137,138,139)32)57)73)53)73)17,(101,102)95)17,((127,(128,(123,126)54)69)30,((48,58)62,(59,60,61,62,63,64,65,(49,(50,51,52,(53,54,55,56,57,66)62)77)40)43)88)1)17,(145,146,(147,148)62)58)15,((1,(2,(3,4,(5,6,7)52)57)91)97,(89,(90,((((31,32,33,34)28,(35,36,37,38,39)59)31,(140,141,(142,143,144)73)99)2,(22,(23,24,(25,(26,(27,28,29,30)70)24)56)39)51)13)14,(87,88)94)22)8)100); TREE implied1_NT = (44,((((((16,17,(18,(19,20,21)47)45)70,((79,(77,78,(76,(74,75)67)21)2)51,(80,(10,((11,12,13,(14,(15,(9,8)58)28)4)16,((81,(82,83,84,(85,(86,129)47)51)50)51,(132,133,(130,131)48)44)30)51)44)23)7)12,(45,67,(46,47)32)77)4,(((91,(92,93)13)11,(96,(115,((100,(99,(97,98)11)26)37,((116,117,118)16,(120,121)62)41)45)34)44)25,(114,(113,(112,(111,((94,95)23,(119,110)53)49)67)48)54)20)43)15,(69,70,71,72,73,68)92)16,((((((122,124,125)29,(103,104,(105,106,107,108,109)30)91)18,(40,((41,(42,43)63)88,(134,(135,(136,137,138,139)32)57)73)53)73)17,(101,102)95)17,((127,(128,(123,126)54)69)30,((48,58)62,(59,60,61,62,63,64,65,(49,(50,51,52,(53,54,55,56,57,66)62)77)40)43)88)1)17,(145,146,(147,148)62)58)15,((1,(2,(3,4,(5,6,7)52)57)91)97,(89,(90,((((31,32,33,34)28,(35,36,37,38,39)59)31,(140,141,(142,143,144)73)99)2,(22,(23,24,(25,(26,(27,28,29,30)70)24)56)39)51)13)14,(87,88)94)22)8)100); TREE implied3_traditional = (44,((((((16,17,(18,(19,20,21)44)40)74,(((79,(77,78,(76,(74,75)69)22)2)52,(10,(11,12,13,(14,15)31)48)38)3,((9,8)71,((81,(82,83,84,(85,(86,(80,129)34)6)7)9)18,(132,133,(130,131)44)37)5)5)3)9,(45,67,(46,47)32)83)3,(((92,(96,(115,((100,(99,(97,98)11)23)34,((116,117,118)15,(120,121)63)38)40)29)24)9,(114,(113,(112,(111,((94,95)21,(119,110)50)61)77)65)67)13)12,(93,91)8)61)15,((((((122,124,125)41,(103,104,(105,106,107,108,109)35)89)4,(40,((41,(42,43)63)91,(134,(135,(136,137,138,139)36)62)74)51)74)15,(101,102)96)7,((127,(128,(123,126)54)65)38,((48,58)65,(59,60,61,62,63,64,65,(49,(50,51,52,(53,54,55,56,57,66)63)77)42)43)93)9)4,(145,146,(147,148)59)54)0,(71,72,73,68,(69,70)25)91)3,((((1,(2,(3,4,(5,6,7)53)58)93)96,(87,88)93)21,(89,(90,(22,((140,(141,(142,143,144)75)31)99,((23,24)9,(25,26,(27,28,29,30)71)53)27)28)37)6)35)14,(31,32,33,34)47)36,(35,36,37,38,39)55)100); TREE implied3_NT = (44,((((((16,17,(18,(19,20,21)44)40)74,(((79,(77,78,(76,(74,75)69)22)2)52,(10,(11,12,13,(14,15)31)48)38)3,((9,8)71,((81,(82,83,84,(85,(86,(80,129)34)6)7)9)18,(132,133,(130,131)44)37)5)5)3)9,(45,67,(46,47)32)83)3,(((92,(96,(115,((100,(99,(97,98)11)23)34,((116,117,118)15,(120,121)63)38)40)29)24)9,(114,(113,(112,(111,((94,95)21,(119,110)50)61)77)65)67)13)12,(93,91)8)61)15,((((((122,124,125)41,(103,104,(105,106,107,108,109)35)89)4,(40,((41,(42,43)63)91,(134,(135,(136,137,138,139)36)62)74)51)74)15,(101,102)96)7,((127,(128,(123,126)54)65)38,((48,58)65,(59,60,61,62,63,64,65,(49,(50,51,52,(53,54,55,56,57,66)63)77)42)43)93)9)4,(145,146,(147,148)59)54)0,(71,72,73,68,(69,70)25)91)3,((((1,(2,(3,4,(5,6,7)53)58)93)96,(87,88)93)21,(89,(90,(22,((140,(141,(142,143,144)75)31)99,((23,24)9,(25,26,(27,28,29,30)71)53)27)28)37)6)35)14,(31,32,33,34)47)36,(35,36,37,38,39)55)100); TREE implied10_traditional = (44,((((((16,17,(18,(19,20,21)36)25)69,((((79,(77,78,(76,(74,75)74)25)5)55,(80,129)49)28,(10,(11,12,13,(14,15)58)80)51)27,((81,(82,83,84,(85,86)19)15)4,(132,133,(130,131)49)44)23)12)22,(45,67,(46,47)30)89)10,(9,8)84)6,(91,(93,((92,((113,(112,(111,((94,95)10,(119,110)37)63)77)74)72,(114,(115,(116,(117,118,(120,121)68)8)38)5)5)15)23,(96,(97,(98,(99,100)11)0)33)10)42)27)81)16,((((((122,124,125)50,(40,((41,(42,43)63)91,(134,(135,(136,137,138,139)36)64)70)54)68)1,((127,(128,(123,126)55)62)43,(48,58,(59,(60,61,62,(63,64,65,(49,(50,51,52,(53,54,55,56,57,66)62)78)40)22)0)38)94)12)8,(145,(146,(147,148)60)8)52)11,(103,104,105,106,107,108,109)86)1,(101,102)97)18,(((1,(2,(3,4,(5,6,7)56)59)94)97,((90,(22,((140,(141,(142,143,144)74)33)99,((23,24)12,(25,26,(27,28,29,30)72)49)14)20)63)6,(89,(87,88)93)44)16)21,(31,32,33,34)70)22,(71,72,73,68,(69,70)25)90,(37,38,39,(35,36)2)51)100); TREE implied10_NT = (44,((((((16,17,(18,(19,20,21)36)25)69,((((79,(77,78,(76,(74,75)74)25)5)55,(80,129)49)28,(10,(11,12,13,(14,15)58)80)51)27,((81,(82,83,84,(85,86)19)15)4,(132,133,(130,131)49)44)23)12)22,(45,67,(46,47)30)89)10,(9,8)84)6,(91,(93,((92,((113,(112,(111,((94,95)10,(119,110)37)63)77)74)72,(114,(115,(116,(117,118,(120,121)68)8)38)5)5)15)23,(96,(97,(98,(99,100)11)0)33)10)42)27)81)16,((((((122,124,125)50,(40,((41,(42,43)63)91,(134,(135,(136,137,138,139)36)64)70)54)68)1,((127,(128,(123,126)55)62)43,(48,58,(59,(60,61,62,(63,64,65,(49,(50,51,52,(53,54,55,56,57,66)62)78)40)22)0)38)94)12)8,(145,(146,(147,148)60)8)52)11,(103,104,105,106,107,108,109)86)1,(101,102)97)18,(((1,(2,(3,4,(5,6,7)56)59)94)97,((90,(22,((140,(141,(142,143,144)74)33)99,((23,24)12,(25,26,(27,28,29,30)72)49)14)20)63)6,(89,(87,88)93)44)16)21,(31,32,33,34)70)22,(71,72,73,68,(69,70)25)90,(37,38,39,(35,36)2)51)100); TREE implied100_traditional = (44,(((19,20,21,(18,(16,17,((47,67,(45,46)21)81,((((76,(74,75)69,(77,78,79)23)47,(80,129)22)28,(10,(11,12,13,(14,15)60)84)62)27,((81,(82,83,84,(85,86)39)34)18,(132,133,(130,131)50)44)44)13)23)41)43)23,((71,72,73,68,(69,70)30)89,(9,8)81)21)14,(((((127,((122,124)36,(103,104,(105,106,107,108,109)41)81)42)48,(128,(123,126)54)65)50,(((125,40,134)57,((41,(42,43)59)84,((135,136)19,(137,138,139)1)60)14)47,(63,64,65,(60,61,62,(59,(48,58)63)5)5,(49,(50,51,52,(53,54,55,56,57,66)62)76)38)85)55)0,((145,146)9,(147,148)58)42)9,(101,102)98)8,((((1,(2,(3,4,(5,6,7)56)58)93)95,((90,((140,(141,(142,143,144)67)21)99,((22,23,24)12,(25,26,(27,28,29,30)71)24)47)61)6,(89,(87,88)92)52)16)12,(31,32,33,34)73)22,(37,38,39,(35,36)2)44)3,(91,(93,((92,((113,(112,(111,(95,(110,(94,119)46)72)53)68)65)68,(114,(115,(116,(117,118,(120,121)67)1)26)1)28)28)29,(96,(97,(98,(99,100)10)1)12)20)44)54)80)100); TREE implied100_NT = (44,(((19,20,21,(18,(16,17,((47,67,(45,46)21)81,((((76,(74,75)69,(77,78,79)23)47,(80,129)22)28,(10,(11,12,13,(14,15)60)84)62)27,((81,(82,83,84,(85,86)39)34)18,(132,133,(130,131)50)44)44)13)23)41)43)23,((71,72,73,68,(69,70)30)89,(9,8)81)21)14,(((((127,((122,124)36,(103,104,(105,106,107,108,109)41)81)42)48,(128,(123,126)54)65)50,(((125,40,134)57,((41,(42,43)59)84,((135,136)19,(137,138,139)1)60)14)47,(63,64,65,(60,61,62,(59,(48,58)63)5)5,(49,(50,51,52,(53,54,55,56,57,66)62)76)38)85)55)0,((145,146)9,(147,148)58)42)9,(101,102)98)8,((((1,(2,(3,4,(5,6,7)56)58)93)95,((90,((140,(141,(142,143,144)67)21)99,((22,23,24)12,(25,26,(27,28,29,30)71)24)47)61)6,(89,(87,88)92)52)16)12,(31,32,33,34)73)22,(37,38,39,(35,36)2)44)3,(91,(93,((92,((113,(112,(111,(95,(110,(94,119)46)72)53)68)65)68,(114,(115,(116,(117,118,(120,121)67)1)26)1)28)28)29,(96,(97,(98,(99,100)10)1)12)20)44)54)80)100); END; BEGIN TREES; Title All_semaphoronts; LINK Taxa = Taxa; TRANSLATE 1 Argulus_japonicus_1, 2 Argulus_japonicus_2, 3 Argulus_japonicus_3, 4 Argulus_japonicus_4, 5 Argulus_japonicus_5, 6 Argulus_japonicus_6, 7 Argulus_japonicus_7, 8 Baccalaureus_falsiramus_Adult, 9 Baccalaureus_falsiramus_Ascothoracid_larva, 10 Baccalaureus_falsiramus_Nauplius_1, 11 Baccalaureus_falsiramus_Nauplius_2, 12 Baccalaureus_falsiramus_Nauplius_3, 13 Baccalaureus_falsiramus_Nauplius_4, 14 Baccalaureus_falsiramus_Nauplius_5, 15 Baccalaureus_falsiramus_Nauplius_6, 16 Bredocaris_admirabilis_1, 17 Bredocaris_admirabilis_2, 18 Bredocaris_admirabilis_3, 19 Bredocaris_admirabilis_4, 20 Bredocaris_admirabilis_5, 21 Bredocaris_admirabilis_6, 22 Darwinula_stevensoni_1, 23 Darwinula_stevensoni_2, 24 Darwinula_stevensoni_3, 25 Darwinula_stevensoni_4, 26 Darwinula_stevensoni_5, 27 Darwinula_stevensoni_6, 28 Darwinula_stevensoni_7, 29 Darwinula_stevensoni_8, 30 Darwinula_stevensoni_9, 31 Derocheilocaris_remanei_1, 32 Derocheilocaris_remanei_2, 33 Derocheilocaris_remanei_3, 34 Derocheilocaris_remanei_4, 35 Derocheilocaris_remanei_5, 36 Derocheilocaris_remanei_6, 37 Derocheilocaris_remanei_7, 38 Derocheilocaris_remanei_8, 39 Derocheilocaris_remanei_9, 40 Eubranchipus_grubii_1, 41 Eubranchipus_grubii_2, 42 Eubranchipus_grubii_3, 43 Eubranchipus_grubii_Adult, 44 Glomeris_marginata_Adult, 45 Hesslandona_angustata_1, 46 Hesslandona_angustata_2, 47 Hesslandona_unisulcata_6, 48 Hutchinsoniella_macracantha_1, 49 Hutchinsoniella_macracantha_10, 50 Hutchinsoniella_macracantha_11, 51 Hutchinsoniella_macracantha_12, 52 Hutchinsoniella_macracantha_13, 53 Hutchinsoniella_macracantha_14, 54 Hutchinsoniella_macracantha_15, 55 Hutchinsoniella_macracantha_16, 56 Hutchinsoniella_macracantha_17, 57 Hutchinsoniella_macracantha_18, 58 Hutchinsoniella_macracantha_2, 59 Hutchinsoniella_macracantha_3, 60 Hutchinsoniella_macracantha_4, 61 Hutchinsoniella_macracantha_5, 62 Hutchinsoniella_macracantha_6, 63 Hutchinsoniella_macracantha_7, 64 Hutchinsoniella_macracantha_8, 65 Hutchinsoniella_macracantha_9, 66 Hutchinsoniella_macracantha_Adult, 67 Klausmuelleria_salopensis, 68 Labidocera_aestiva_Adult, 69 Labidocera_aestiva_copepodid_1, 70 Labidocera_aestiva_copepodid_2, 71 Labidocera_aestiva_copepodid_3, 72 Labidocera_aestiva_copepodid_4, 73 Labidocera_aestiva_copepodid_5, 74 Labidocera_aestiva_Nauplius_1, 75 Labidocera_aestiva_Nauplius_2, 76 Labidocera_aestiva_Nauplius_3, 77 Labidocera_aestiva_Nauplius_4, 78 Labidocera_aestiva_Nauplius_5, 79 Labidocera_aestiva_Nauplius_6, 80 Lepas_anatifera_Cyprid, 81 Lepas_anatifera_Nauplius_1, 82 Lepas_anatifera_Nauplius_2, 83 Lepas_anatifera_Nauplius_3, 84 Lepas_anatifera_Nauplius_4, 85 Lepas_anatifera_Nauplius_5, 86 Lepas_anatifera_Nauplius_6, 87 Manawa_staceyi_2, 88 Manawa_staceyi_3, 89 Manawa_staceyi_4, 90 Manawa_staceyi_6, 91 Nebalia_brucei_Adult, 92 Nebalia_sp._g, 93 Nebalia_sp._i, 94 Orchestia_cavimana_1, 95 Orchestia_cavimana_2, 96 Orchestia_cavimana_3, 97 Orchestia_cavimana_4, 98 Orchestia_cavimana_5, 99 Orchestia_cavimana_6, 100 Orchestia_cavimana_Hatchling, 101 Pleomothra_apletocheles_1, 102 Pleomothra_apletocheles_Adult, 103 Pleomothra_apletocheles_Nauplius_1, 104 Pleomothra_apletocheles_Nauplius_2, 105 Pleomothra_apletocheles_Nauplius_3, 106 Pleomothra_apletocheles_Nauplius_4, 107 Pleomothra_apletocheles_Nauplius_5, 108 Pleomothra_apletocheles_Nauplius_6, 109 Pleomothra_apletocheles_Nauplius_7, 110 Porcellio_scaber_10, 111 Porcellio_scaber_11, 112 Porcellio_scaber_12, 113 Porcellio_scaber_13, 114 Porcellio_scaber_14, 115 Porcellio_scaber_15, 116 Porcellio_scaber_16, 117 Porcellio_scaber_17, 118 Porcellio_scaber_18, 119 Porcellio_scaber_9, 120 Porcellio_scaber_manca_1, 121 Porcellio_scaber_manca_2, 122 Rehbachiella_kinnekullensis_A_1, 123 Rehbachiella_kinnekullensis_A_14, 124 Rehbachiella_kinnekullensis_A_2, 125 Rehbachiella_kinnekullensis_A_3, 126 Rehbachiella_kinnekullensis_B_17, 127 Rehbachiella_kinnekullensis_B_4, 128 Rehbachiella_kinnekullensis_B_8, 129 Sacculina_carcini_Cyprid, 130 Sacculina_carcini_Nauplius_1, 131 Sacculina_carcini_Nauplius_2, 132 Sacculina_carcini_Nauplius_3, 133 Sacculina_carcini_Nauplius_4, 134 Triops_cancriformis_1, 135 Triops_cancriformis_2, 136 Triops_cancriformis_3, 137 Triops_cancriformis_4, 138 Triops_cancriformis_5, 139 Triops_cancriformis_Adult, 140 Vargula_hilgendorfii_1, 141 Vargula_hilgendorfii_2, 142 Vargula_hilgendorfii_3, 143 Vargula_hilgendorfii_4, 144 Vargula_hilgendorfii_5, 145 Yicaris_dianensis_1, 146 Yicaris_dianensis_2, 147 Yicaris_dianensis_3, 148 Yicaris_dianensis_6; TREE equal_traditional = (44,(122,124,125,40,134,92,93,91,96,97,98,99,100,114,115,116,117,118,31,32,33,34,35,36,37,38,39,(((((16,17)29,(18,(19,20,21)28)18)40,(47,(67,(45,46)39)10)78)6,((127,(128,(123,126)52)54)17,(145,(146,(147,148)52)7)43,((48,58)79,(59,(60,61,62,(63,64,65,(49,(50,51,52,(53,54,55,56,57,66)61)72)28)8)21)12)94)4)10,(90,9,8,80,129,((140,(141,(142,143,144)71)9)99,(22,23,24,25,26,(27,28,29,30)65)61)35,(89,(87,88)64)32)10)12,(41,(42,43)39)72,(135,136,137,138,139)53,(1,2,3,4,5,6,7)80,((76,(74,75)61,(77,78,79)35)33,(10,(11,12,13,(14,15)51)72)50)6,(71,72,73,68,(69,70)48)87,(113,(112,(111,(95,(110,(94,119)35)59)23)10)31)37,(120,121)65,(103,104,(105,106,107,108,109)45)39,(101,102)89,(130,131,(132,133,(81,(82,83,84,85,86)37)14)41)43)100); TREE equal_NT = (44,(122,124,125,40,134,92,93,91,96,97,98,99,100,114,115,116,117,118,31,32,33,34,35,36,37,38,39,(((((16,17)3,(18,(19,20,21)5)1)16,(47,(67,(45,46)32)5)57)0,((127,(128,(123,126)37)36)2,(145,(146,(147,148)33)2)20,((48,58)57,(59,(60,61,62,(63,64,65,(49,(50,51,52,(53,54,55,56,57,66)47)55)15)0)10)12)86)0)0,(90,9,8,80,129,((140,(141,(142,143,144)61)0)98,(22,23,24,25,26,(27,28,29,30)49)31)14,(89,(87,88)39)12)1)1,(41,(42,43)29)48,(135,136,137,138,139)32,(1,2,3,4,5,6,7)62,((76,(74,75)34,(77,78,79)16)6,(10,(11,12,13,(14,15)39)50)26)1,(71,72,73,68,(69,70)40)69,(113,(112,(111,(95,(110,(94,119)24)40)13)8)17)26,(120,121)57,(103,104,(105,106,107,108,109)13)21,(101,102)78,(130,131,(132,133,(81,(82,83,84,85,86)8)2)25)22)100); TREE implied1_traditional = (44,(((((((((((67,((16,17,(18,(19,20,21)57)65)75,((10,((87,88)77,(105,106,107,108,109,(103,104)17)64)9)30,(11,12,13,(14,15)14)21)19)23)67,((9,8)56,(130,131,(132,133,(81,(82,83,84,(85,(86,(80,129)34)12)1)0)12)34)2)10)68,(45,(46,47)32)54)17,(90,(22,(23,24,(25,(26,(27,28,29,30)64)19)55)43)44)10)17,(((69,70,71,72,73,68)95,(140,141,(142,143,144)73)99)2,((31,32,33,34)38,(35,36,37,38,39)59)10)19)24,(145,(146,(147,148)64)8)73)24,(89,((127,(128,(123,126)46)65)19,((48,58)74,(59,(60,61,62,(63,64,65,(49,(50,51,52,(53,54,55,56,57,66)62)78)39)33)15)42)90)4)12)24,(122,124,125)27)16,(((1,(2,(3,4,(5,6,7)43)49)82)77,(74,(75,(79,(76,77,78)11)6)51)43)10,(101,102)95)19)17,(40,((41,(42,43)63)87,(134,(135,(136,137,138,139)30)64)27)22)24)15,(((91,(92,93)19)8,(96,(115,((100,(99,(97,98)30)40)48,((116,117,118)15,(120,121)61)41)51)33)12)27,(114,(113,(112,(111,((94,95)23,(119,110)53)40)57)39)58)13)12)100); TREE implied1_NT = (44,((((((((((((16,(17,(18,(19,20,21)57)65)13)75,(10,(11,12,13,(14,15)14)21)9)18,((103,104)17,(105,106,107,108,109)47)64)20,((67,(45,(46,47)32)54)58,((9,8)56,(130,131,(132,133,(81,(82,83,84,(85,(86,(80,129)34)12)1)0)12)34)2)10)22)13,(90,(22,(23,24,(25,(26,(27,28,29,30)64)19)55)43)44)10)15,(((69,70,71,72,73,68)95,(140,141,(142,143,144)73)99)2,((31,32,33,34)38,(35,36,37,38,39)59)10)19)23,(145,146,(147,148)64)73)23,(89,((123,128,126)65,((48,58)74,(59,60,61,62,(63,64,65,(49,(50,51,52,(53,54,55,56,57,66)62)78)39)33)42)90)19)27)30,(91,(101,102)95)19)38,(40,((41,(42,43)63)87,((134,(93,(87,88)77)35)37,((135,(136,137,138,139)30)64,(1,(2,(3,4,(5,6,7)43)49)82)77)34)37)37)37)30,((92,(96,(115,((100,(99,(97,98)30)40)48,((116,117,118)15,(120,121)61)41)51)33)12)17,(114,(113,(112,(111,((94,95)23,(119,110)53)40)57)39)58)13)6)30,((122,124,125)27,(127,(74,(75,(79,(76,77,78)11)6)51)43)30)30)100); TREE implied3_traditional = (44,((((((((((16,17,(18,(19,20,21)53)58)78,((67,(45,(46,47)32)43)69,((103,104,(105,106,107,108,109)47)63,(10,(11,12,13,(14,15)41)54)22)2)9)14,((9,8)69,(80,129)47)7)25,((22,((140,(141,(142,143,144)74)17)99,((23,24)11,(25,26,(27,28,29,30)66)55)36)24)21,(90,(89,(87,88)75)8)5)11)26,((((122,124,125)38,(127,(128,(123,126)53)62)33)13,((48,58)74,(59,(60,61,62,(63,64,65,(49,(50,51,52,(53,54,55,56,57,66)63)78)42)35)18)43)96)12,(145,(146,(147,148)65)8)74)14)26,(71,72,73,68,(69,70)24)95)26,((31,32,33,34)41,(35,36,37,38,39)57)4,(101,102)95)27,(1,(2,(3,4,(5,6,7)44)51)84)78)27,(130,131,(132,133,(81,(82,83,84,(79,(77,78,(76,(74,75)58)10)0)43,(85,86)11)17)27)43)19)6,((40,((41,(42,43)65)88,(134,(135,(136,137,138,139)33)61)61)48)53,(((92,(96,(115,((100,(99,(97,98)21)32)43,((116,117,118)11,(120,121)62)40)46)33)3)21,(114,(113,(112,(111,((94,95)21,(119,110)50)51)71)53)62)10)0,(93,91)13)20)2)100); TREE implied3_NT = (44,((((((((((16,17,(18,(19,20,21)53)58)78,((67,(45,(46,47)32)43)69,((103,104,(105,106,107,108,109)47)63,(10,(11,12,13,(14,15)41)54)22)2)9)14,((9,8)69,(80,129)47)7)25,((22,((140,(141,(142,143,144)74)17)99,((23,24)11,(25,26,(27,28,29,30)66)55)36)24)21,(90,(89,(87,88)75)8)5)11)26,((((122,124,125)38,(127,(128,(123,126)53)62)33)13,((48,58)74,(59,(60,61,62,(63,64,65,(49,(50,51,52,(53,54,55,56,57,66)63)78)42)35)18)43)96)12,(145,(146,(147,148)65)8)74)14)26,(71,72,73,68,(69,70)24)95)26,((31,32,33,34)41,(35,36,37,38,39)57)4,(101,102)95)27,(1,(2,(3,4,(5,6,7)44)51)84)78)27,(130,131,(132,133,(81,(82,83,84,(79,(77,78,(76,(74,75)58)10)0)43,(85,86)11)17)27)43)19)6,((40,((41,(42,43)65)88,(134,(135,(136,137,138,139)33)61)61)48)53,(((92,(96,(115,((100,(99,(97,98)21)32)43,((116,117,118)11,(120,121)62)40)46)33)3)21,(114,(113,(112,(111,((94,95)21,(119,110)50)51)71)53)62)10)0,(93,91)13)20)2)100); TREE implied10_traditional = (44,((40,((((((((16,17,(18,(19,20,21)51)47)79,((67,(45,(46,47)28)29)83,(80,129)51)11)15,((22,((140,(141,(142,143,144)76)23)99,(23,24,(25,(26,(27,28,29,30)69)11)50)11)36)30,((89,(87,88)78)37,(90,(9,8)73)9)17)3)7,(((127,(128,(123,126)54)61)36,(48,58,(59,(60,61,62,(63,64,65,(49,(50,51,52,(53,54,55,56,57,66)63)79)40)34)15)39)98)6,(145,(146,(147,148)67)13)73)11)9,(((71,72,73,68,(69,70)36)95,((37,38,39,(35,36)15)53,(101,102)93)3)1,(31,32,33,34)61)5)11,(((1,(2,(3,4,(5,6,7)48)47)79)89,((103,104,(105,106,107,108,109)51)67,(10,(11,12,13,(14,15)55)73)28)9)17,(79,(77,78,(76,(74,75)59)12)1)41)19)19,(130,131,(132,133,(81,(82,83,84,(85,86)30)32)17)44)39)7,(122,124,125)54)21)51,(((41,(42,43)64)88,(134,(135,(136,137,138,139)28)55)64)54,((92,(113,(112,(111,(95,(94,(119,110)36)21)57)74)65)70)9,((93,91)3,(96,(97,(98,(99,(100,((117,118,(116,(114,115)14)36)34,(120,121)66)3)39)38)36)26)14)33)32)56)100); TREE implied10_NT = (44,((40,((((((((16,17,(18,(19,20,21)51)47)79,((67,(45,(46,47)28)29)83,(80,129)51)11)15,((22,((140,(141,(142,143,144)76)23)99,(23,24,(25,(26,(27,28,29,30)69)11)50)11)36)30,((89,(87,88)78)37,(90,(9,8)73)9)17)3)7,(((127,(128,(123,126)54)61)36,(48,58,(59,(60,61,62,(63,64,65,(49,(50,51,52,(53,54,55,56,57,66)63)79)40)34)15)39)98)6,(145,(146,(147,148)67)13)73)11)9,(((71,72,73,68,(69,70)36)95,((37,38,39,(35,36)15)53,(101,102)93)3)1,(31,32,33,34)61)5)11,(((1,(2,(3,4,(5,6,7)48)47)79)89,((103,104,(105,106,107,108,109)51)67,(10,(11,12,13,(14,15)55)73)28)9)17,(79,(77,78,(76,(74,75)59)12)1)41)19)19,(130,131,(132,133,(81,(82,83,84,(85,86)30)32)17)44)39)7,(122,124,125)54)21)51,(((41,(42,43)64)88,(134,(135,(136,137,138,139)28)55)64)54,((92,(113,(112,(111,(95,(94,(119,110)36)21)57)74)65)70)9,((93,91)3,(96,(97,(98,(99,(100,((117,118,(116,(114,115)14)36)34,(120,121)66)3)39)38)36)26)14)33)32)56)100); TREE implied100_traditional = (44,((((134,(40,((((((((((((16,17)33,(18,(19,20,21)43)35)62,(47,(67,(45,46)21)5)83)3,(((127,(128,(123,126)55)65)31,((48,58)73,(59,(60,61,62,(63,64,65,(49,(50,51,52,(53,54,55,56,57,66)62)76)31)23)2)20)97)2,(145,(146,(147,148)60)8)56)12)9,((((140,(141,(142,143,144)74)22)99,((22,23,24)14,(25,26,(27,28,29,30)69)28)57)43,((89,(87,88)72)37,(90,(9,8)61)5)12)1,(80,129)14)7)7,((71,72,73,68,(69,70)47)94,((37,38,39,(35,36)21)57,(101,102)93)10)2)17,(1,(2,(3,4,(5,6,7)42)35)66)87)17,(31,32,33,34)63)9,(103,104,(105,106,107,108,109)50)54)10,((76,(74,75)59,(77,78,79)19)41,(10,(11,12,13,(14,15)56)77)41)7)17,(130,131,(132,133,(81,(82,83,84,85,86)42)26)41)45)7,(122,124,125)49)6)45)44,((41,(42,43)53)82,(139,(135,138,(136,137)8)10)56)8)18,(93,91)6)19,(((92,96)1,(113,(112,(111,(95,(110,(94,119)30)65)41)50)51)58)6,(114,(115,(116,(117,118,(120,121)67)1)26)1)32)38,(99,100,(97,98)3)23)100); TREE implied100_NT = (44,((((134,(40,((((((((((((16,17)33,(18,(19,20,21)43)35)62,(47,(67,(45,46)21)5)83)3,(((127,(128,(123,126)55)65)31,((48,58)73,(59,(60,61,62,(63,64,65,(49,(50,51,52,(53,54,55,56,57,66)62)76)31)23)2)20)97)2,(145,(146,(147,148)60)8)56)12)9,((((140,(141,(142,143,144)74)22)99,((22,23,24)14,(25,26,(27,28,29,30)69)28)57)43,((89,(87,88)72)37,(90,(9,8)61)5)12)1,(80,129)14)7)7,((71,72,73,68,(69,70)47)94,((37,38,39,(35,36)21)57,(101,102)93)10)2)17,(1,(2,(3,4,(5,6,7)42)35)66)87)17,(31,32,33,34)63)9,(103,104,(105,106,107,108,109)50)54)10,((76,(74,75)59,(77,78,79)19)41,(10,(11,12,13,(14,15)56)77)41)7)17,(130,131,(132,133,(81,(82,83,84,85,86)42)26)41)45)7,(122,124,125)49)6)45)44,((41,(42,43)53)82,(139,(135,138,(136,137)8)10)56)8)18,(93,91)6)19,(((92,96)1,(113,(112,(111,(95,(110,(94,119)30)65)41)50)51)58)6,(114,(115,(116,(117,118,(120,121)67)1)26)1)32)38,(99,100,(97,98)3)23)100); END; BEGIN TREES; Title all_sem_monophyly_trees; LINK Taxa = Taxa; TRANSLATE 1 Argulus_japonicus_1, 2 Argulus_japonicus_2, 3 Argulus_japonicus_3, 4 Argulus_japonicus_4, 5 Argulus_japonicus_5, 6 Argulus_japonicus_6, 7 Argulus_japonicus_7, 8 Baccalaureus_falsiramus_Adult, 9 Baccalaureus_falsiramus_Ascothoracid_larva, 10 Baccalaureus_falsiramus_Nauplius_1, 11 Baccalaureus_falsiramus_Nauplius_2, 12 Baccalaureus_falsiramus_Nauplius_3, 13 Baccalaureus_falsiramus_Nauplius_4, 14 Baccalaureus_falsiramus_Nauplius_5, 15 Baccalaureus_falsiramus_Nauplius_6, 16 Bredocaris_admirabilis_1, 17 Bredocaris_admirabilis_2, 18 Bredocaris_admirabilis_3, 19 Bredocaris_admirabilis_4, 20 Bredocaris_admirabilis_5, 21 Bredocaris_admirabilis_6, 22 Darwinula_stevensoni_1, 23 Darwinula_stevensoni_2, 24 Darwinula_stevensoni_3, 25 Darwinula_stevensoni_4, 26 Darwinula_stevensoni_5, 27 Darwinula_stevensoni_6, 28 Darwinula_stevensoni_7, 29 Darwinula_stevensoni_8, 30 Darwinula_stevensoni_9, 31 Derocheilocaris_remanei_1, 32 Derocheilocaris_remanei_2, 33 Derocheilocaris_remanei_3, 34 Derocheilocaris_remanei_4, 35 Derocheilocaris_remanei_5, 36 Derocheilocaris_remanei_6, 37 Derocheilocaris_remanei_7, 38 Derocheilocaris_remanei_8, 39 Derocheilocaris_remanei_9, 40 Eubranchipus_grubii_1, 41 Eubranchipus_grubii_2, 42 Eubranchipus_grubii_3, 43 Eubranchipus_grubii_Adult, 44 Glomeris_marginata_Adult, 45 Hesslandona_angustata_1, 46 Hesslandona_angustata_2, 47 Hesslandona_unisulcata_6, 48 Hutchinsoniella_macracantha_1, 49 Hutchinsoniella_macracantha_10, 50 Hutchinsoniella_macracantha_11, 51 Hutchinsoniella_macracantha_12, 52 Hutchinsoniella_macracantha_13, 53 Hutchinsoniella_macracantha_14, 54 Hutchinsoniella_macracantha_15, 55 Hutchinsoniella_macracantha_16, 56 Hutchinsoniella_macracantha_17, 57 Hutchinsoniella_macracantha_18, 58 Hutchinsoniella_macracantha_2, 59 Hutchinsoniella_macracantha_3, 60 Hutchinsoniella_macracantha_4, 61 Hutchinsoniella_macracantha_5, 62 Hutchinsoniella_macracantha_6, 63 Hutchinsoniella_macracantha_7, 64 Hutchinsoniella_macracantha_8, 65 Hutchinsoniella_macracantha_9, 66 Hutchinsoniella_macracantha_Adult, 67 Klausmuelleria_salopensis, 68 Labidocera_aestiva_Adult, 69 Labidocera_aestiva_copepodid_1, 70 Labidocera_aestiva_copepodid_2, 71 Labidocera_aestiva_copepodid_3, 72 Labidocera_aestiva_copepodid_4, 73 Labidocera_aestiva_copepodid_5, 74 Labidocera_aestiva_Nauplius_1, 75 Labidocera_aestiva_Nauplius_2, 76 Labidocera_aestiva_Nauplius_3, 77 Labidocera_aestiva_Nauplius_4, 78 Labidocera_aestiva_Nauplius_5, 79 Labidocera_aestiva_Nauplius_6, 80 Lepas_anatifera_Cyprid, 81 Lepas_anatifera_Nauplius_1, 82 Lepas_anatifera_Nauplius_2, 83 Lepas_anatifera_Nauplius_3, 84 Lepas_anatifera_Nauplius_4, 85 Lepas_anatifera_Nauplius_5, 86 Lepas_anatifera_Nauplius_6, 87 Manawa_staceyi_2, 88 Manawa_staceyi_3, 89 Manawa_staceyi_4, 90 Manawa_staceyi_6, 91 Nebalia_brucei_Adult, 92 Nebalia_sp._g, 93 Nebalia_sp._i, 94 Orchestia_cavimana_1, 95 Orchestia_cavimana_2, 96 Orchestia_cavimana_3, 97 Orchestia_cavimana_4, 98 Orchestia_cavimana_5, 99 Orchestia_cavimana_6, 100 Orchestia_cavimana_Hatchling, 101 Pleomothra_apletocheles_1, 102 Pleomothra_apletocheles_Adult, 103 Pleomothra_apletocheles_Nauplius_1, 104 Pleomothra_apletocheles_Nauplius_2, 105 Pleomothra_apletocheles_Nauplius_3, 106 Pleomothra_apletocheles_Nauplius_4, 107 Pleomothra_apletocheles_Nauplius_5, 108 Pleomothra_apletocheles_Nauplius_6, 109 Pleomothra_apletocheles_Nauplius_7, 110 Porcellio_scaber_10, 111 Porcellio_scaber_11, 112 Porcellio_scaber_12, 113 Porcellio_scaber_13, 114 Porcellio_scaber_14, 115 Porcellio_scaber_15, 116 Porcellio_scaber_16, 117 Porcellio_scaber_17, 118 Porcellio_scaber_18, 119 Porcellio_scaber_9, 120 Porcellio_scaber_manca_1, 121 Porcellio_scaber_manca_2, 122 Rehbachiella_kinnekullensis_A_1, 123 Rehbachiella_kinnekullensis_A_14, 124 Rehbachiella_kinnekullensis_A_2, 125 Rehbachiella_kinnekullensis_A_3, 126 Rehbachiella_kinnekullensis_B_17, 127 Rehbachiella_kinnekullensis_B_4, 128 Rehbachiella_kinnekullensis_B_8, 129 Sacculina_carcini_Cyprid, 130 Sacculina_carcini_Nauplius_1, 131 Sacculina_carcini_Nauplius_2, 132 Sacculina_carcini_Nauplius_3, 133 Sacculina_carcini_Nauplius_4, 134 Triops_cancriformis_1, 135 Triops_cancriformis_2, 136 Triops_cancriformis_3, 137 Triops_cancriformis_4, 138 Triops_cancriformis_5, 139 Triops_cancriformis_Adult, 140 Vargula_hilgendorfii_1, 141 Vargula_hilgendorfii_2, 142 Vargula_hilgendorfii_3, 143 Vargula_hilgendorfii_4, 144 Vargula_hilgendorfii_5, 145 Yicaris_dianensis_1, 146 Yicaris_dianensis_2, 147 Yicaris_dianensis_3, 148 Yicaris_dianensis_6; TREE equal_traditional = (44,((((((((16,17,(18,(19,20,21)54)50)92,((10,11,12,13,(14,15)50)94,(9,8)97,(129,(81,(82,83,84,85,86,80)24)49,(132,133,(130,131)31)69)43)58)17,(67,(47,(45,46)44)17)89)9,(((140,(141,(142,143,144)71)30)99,(22,23,24,25,26,(27,28,29,30)76)93)38,(90,(89,(87,88)93)55)67)21)15,(((122,124,125)83,(127,(128,(123,126)61)85)23)69,(145,(146,(147,148)69)10)88,(48,58,(59,(60,61,62,(63,64,65,(49,(50,51,52,(53,54,55,56,57,66)61)74)37)31)18)21)99)14)14,(79,(77,78,(76,(74,75)72)49)30)97,(31,32,33,(34,(35,(36,(37,38,39)29)20)48)2)75)27,(1,(2,(3,4,(5,6,7)32)27)50)99,((71,72,73,68,(69,70)26)93,(103,104,105,106,107,108,109)98,(101,102)70)27)25,(40,(41,(42,43)58)81,(134,(135,(136,137,138,139)68)65)90)85,((92,93,91)70,(96,(94,95)99)59,(97,(98,(99,100)20)30)32)9,((113,(112,(111,(119,110)99)84)91)90,(114,(115,(116,(117,118,(120,121)68)24)53)46)14)89)100); TREE equal_NT = (44,(92,93,91,97,98,99,100,(((16,17,(18,(19,20,21)54)50)92,((10,11,12,13,(14,15)50)94,(9,8)97,(129,(81,(82,83,84,85,86,80)24)49,(132,133,(130,131)31)69)43)58)17,(47,67,(45,46)44)89)9,((122,124,125)83,(127,(128,(123,126)61)85)23)69,(145,(146,(147,148)69)10)88,(40,(41,(42,43)58)81,(134,(135,(136,137,138,139)68)65)90)85,(1,(2,(3,4,(5,6,7)32)27)50)99,((48,58)71,(59,(60,61,62,(63,64,65,(49,(50,51,52,(53,54,55,56,57,66)61)74)37)31)18)21)99,(79,(77,78,(76,(74,75)72)49)30)97,(69,70,71,72,73,68)93,(96,(94,95)99)59,(114,115,116,117,118,120,121,(113,(112,(111,(119,110)99)84)91)90)89,(31,32,33,(34,(35,(36,(37,38,39)29)20)48)2)75,(((140,(141,(142,143,144)71)30)99,(22,23,24,25,26,(27,28,29,30)76)93)38,(89,90,(87,88)93)67)21,(103,104,105,106,107,108,109)98,(101,102)70)100); TREE implied1_traditional = (44,(((((((((16,17,(18,(19,20,21)61)75)91,((67,(45,(46,47)33)54)91,((10,(11,12,13,(14,(15,(9,8)94)26)1)8)59,(129,(81,(82,83,84,(85,(86,80)39)13)50)53,(132,133,(130,131)33)69)33)35)7)38,((22,(23,24,(25,(26,(27,28,29,30)83)40)55)29)91,(90,(89,(87,88)89)47)67)34)14,(((79,(77,78,(76,(74,75)70)48)39)95,(69,70,71,72,73,68)93,(31,32,33,(34,(35,(36,(37,38,39)21)3)49)34)78)13,(140,(141,(142,143,144)74)40)99)11)10,(145,(146,(147,148)80)37)87)8,(((122,124,125)88,(127,(128,(123,126)61)88)66)66,(48,58,(59,(60,61,62,(63,64,65,(49,(50,51,52,(53,54,55,56,57,66)62)79)40)44)37)54)100)27)2,((40,(41,(42,43)63)87,(134,(135,(136,137,138,139)71)72)93)76,(((91,(92,93)30)58,(94,95)99,(96,(97,(98,(99,100)33)59)78)39)59,(114,(113,(112,(111,(119,110)98)84)89)77,(115,(116,(117,118,(120,121)77)46)75)70)89)63)17)6,(1,(2,(3,4,(5,6,7)44)45)74)98)15,((103,104,105,106,107,108,109)98,(101,102)67)25)100); TREE implied1_NT = (44,(((((((((16,17,(18,(19,20,21)61)75)91,((67,(45,(46,47)33)54)91,((10,(11,12,13,(14,(15,(9,8)94)26)1)8)59,(129,(81,(82,83,84,(85,(86,80)39)13)50)53,(132,133,(130,131)33)69)33)35)7)38,((22,(23,24,(25,(26,(27,28,29,30)83)40)55)29)91,(90,(89,(87,88)89)47)67)34)14,(((79,(77,78,(76,(74,75)70)48)39)95,(69,70,71,72,73,68)93,(31,32,33,(34,(35,(36,(37,38,39)21)3)49)34)78)13,(140,(141,(142,143,144)74)40)99)11)10,(145,(146,(147,148)80)37)87)8,(((122,124,125)88,(127,(128,(123,126)61)88)66)66,(48,58,(59,(60,61,62,(63,64,65,(49,(50,51,52,(53,54,55,56,57,66)62)79)40)44)37)54)100)27)2,((40,(41,(42,43)63)87,(134,(135,(136,137,138,139)71)72)93)76,(((91,(92,93)30)58,(94,95)99,(96,(97,(98,(99,100)33)59)78)39)59,(114,(113,(112,(111,(119,110)98)84)89)77,(115,(116,(117,118,(120,121)77)46)75)70)89)63)17)6,(1,(2,(3,4,(5,6,7)44)45)74)98)15,((103,104,105,106,107,108,109)98,(101,102)67)25)100); TREE implied3_traditional = (44,(((((((16,17,(18,(19,20,21)61)73)92,((10,11,12,13,(14,15)10)19,(9,8)96,(129,(81,(82,83,84,(85,(86,80)38)13)54)55,(132,133,(130,131)30)67)43)32)11,(67,(45,(46,47)32)49)90)28,(((140,(141,(142,143,144)75)40)99,((22,23,24)4,(25,26,(27,28,29,30)82)50)93)0,(90,(89,(87,88)90)49)67)2)29,((((122,124,125)89,(127,(128,(123,126)60)87)65)70,(48,58,(59,(60,61,62,(63,64,65,(49,(50,51,52,(53,54,55,56,57,66)63)79)41)45)37)52)99)30,(145,(146,(147,148)80)34)88)25)24,((40,(41,(42,43)63)87,(134,(135,(136,137,138,139)73)74)94)80,(((91,(92,93)28)58,(94,95)99,(96,(97,(98,(99,100)34)60)77)38)57,((113,(112,(111,(119,110)98)84)88)77,(114,(115,(116,(117,118,(120,121)76)45)74)70)29)90)60)16)0,(1,(2,(3,4,(5,6,7)44)42)72)98,((79,(77,78,(76,(74,75)65)46)35)97,(69,70,71,72,73,68)92,(31,32,33,34)42,(35,36,37,38,39)49,(103,104,105,106,107,108,109)98,(101,102)68)13)100); TREE implied3_NT = (44,((((((((17,(16,(18,(19,(20,21)0)61)73)17)92,(((10,(12,(11,(13,(14,15)10)39)39)18)19,(9,8)96)40,((81,((82,(83,84)0)1,(85,(86,80)38)13)54)55,(129,(133,(132,(130,131)30)8)67)16)43)32)11,(67,(45,(46,47)32)49)90)28,(((140,(141,(142,(143,144)1)75)40)99,((24,(22,23)30)4,(25,(26,(30,(29,(27,28)0)0)82)31)50)93)0,(90,(89,(87,88)90)49)67)2)29,((((125,(122,124)3)89,(127,(128,(123,126)60)87)65)70,((48,58)66,(59,((60,(61,62)0)0,(65,(64,(63,(49,(52,(51,(50,(54,(53,(57,(66,(55,56)10)10)1)10)63)1)1)79)41)7)7)45)37)52)99)30,(145,(146,(147,148)80)34)88)25)24,(((40,(41,(42,43)63)87)10,(134,(135,(138,(139,(136,137)7)18)73)74)94)80,(((91,(92,93)28)58,((94,95)99,(96,(97,(98,(99,100)34)60)77)38)13)57,((113,(112,(111,(119,110)98)84)88)77,(114,(115,(116,(117,(118,(120,121)76)9)45)74)70)29)90)60)16)0,(((79,((76,(74,75)65)46,(77,78)0)35)97,(70,(69,(72,(73,(71,68)5)5)21)26)92)3,(((33,(32,(31,34)23)23)42,(39,(37,(38,(35,36)19)23)23)49)73,((107,(106,(109,((103,104)27,(105,108)0)9)9)9)98,(101,102)68)16)5)13)15,(1,(2,(4,(3,(5,(6,7)0)44)11)42)72)98)100); TREE implied10_NT = (44,((((((((16,17,(18,(19,20,21)60)70)94,((10,11,12,13,(14,15)33)77,(9,8)96,(129,(81,(82,83,84,(85,(86,80)26)4)43)60,(132,133,(130,131)29)71)46)42)20,(67,(45,(46,47)32)49)92)22,(((140,(141,(142,143,144)74)42)99,((22,23,24)18,(25,26,(27,28,29,30)82)45)93)29,(90,(89,(87,88)91)51)68)24)28,((((122,124,125)89,(127,(128,(123,126)61)88)65)74,((48,58)67,(59,(60,61,62,(63,64,65,(49,(50,51,52,(53,54,55,56,57,66)62)79)41)46)38)51)99)27,(145,(146,(147,148)79)36)90)30)33,((1,(2,(3,4,(5,6,7)49)44)75)99,((79,(77,78,(76,(74,75)66)48)37)98,(69,70,71,72,73,68)92,(31,32,33,34)32,(35,36,37,38,39)48,(103,104,105,106,107,108,109)98,(101,102)68)3)19)42,(40,(41,(42,43)63)90,(134,(135,(136,137,138,139)76)76)93)76)18,(((92,(93,91)1)60,(94,95)99,(96,(97,(98,(99,100)30)52)70)15)55,((113,(112,(111,(119,110)98)84)89)79,(114,(115,(116,(117,118,(120,121)75)41)70)65)28)90)41)100); TREE implied100_traditional = (44,(((((((((16,17,(18,(19,20,21)58)57)94,((10,11,12,13,(14,15)42)90,(9,8)94,(129,(81,(82,83,84,(85,(86,80)10)7)25)57,(132,133,(130,131)28)73)40)49)20,(67,(47,(45,46)19)26)91)19,(((140,(141,(142,143,144)70)33)99,((22,23,24)26,(25,26,(27,28,29,30)79)36)94)38,(90,(89,(87,88)92)56)71)26)22,((((122,124,125)86,(127,(128,(123,126)61)86)42)73,((48,58)73,(59,(60,61,62,(63,64,65,(49,(50,51,52,(53,54,55,56,57,66)62)79)37)38)28)36)99)18,(145,(146,(147,148)75)21)90)25)27,((31,32,33,(34,(35,(36,(37,38,39)26)9)47)27)76,(103,104,105,106,107,108,109)98,(101,102)69)19)3,((1,(2,(3,4,(5,6,7)46)37)67)99,(79,(77,78,(76,(74,75)69)57)41)98,(69,70,71,72,73,68)93)7)46,(40,(41,(42,43)62)89,(134,(135,(136,137,138,139)76)76)92)81)36,(((92,(93,91)11)71,(96,(94,95)99)38,(97,(98,(99,100)23)35)45)29,((113,(112,(111,(119,110)99)84)91)88,(114,(115,(116,(117,118,(120,121)70)29)59)53)16)90)23)100); TREE implied100_NT = (44,(((((((((16,17,(18,(19,20,21)58)57)94,((10,11,12,13,(14,15)42)90,(9,8)94,(129,(81,(82,83,84,(85,(86,80)10)7)25)57,(132,133,(130,131)28)73)40)49)20,(67,(47,(45,46)19)26)91)19,(((140,(141,(142,143,144)70)33)99,((22,23,24)26,(25,26,(27,28,29,30)79)36)94)38,(90,(89,(87,88)92)56)71)26)22,((((122,124,125)86,(127,(128,(123,126)61)86)42)73,((48,58)73,(59,(60,61,62,(63,64,65,(49,(50,51,52,(53,54,55,56,57,66)62)79)37)38)28)36)99)18,(145,(146,(147,148)75)21)90)25)27,((31,32,33,(34,(35,(36,(37,38,39)26)9)47)27)76,(103,104,105,106,107,108,109)98,(101,102)69)19)3,((1,(2,(3,4,(5,6,7)46)37)67)99,(79,(77,78,(76,(74,75)69)57)41)98,(69,70,71,72,73,68)93)7)46,(40,(41,(42,43)62)89,(134,(135,(136,137,138,139)76)76)92)81)36,(((92,(93,91)11)71,(96,(94,95)99)38,(97,(98,(99,100)23)35)45)29,((113,(112,(111,(119,110)99)84)91)88,(114,(115,(116,(117,118,(120,121)70)29)59)53)16)90)23)100); END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 146; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Mk1 (est.)': 1 - 146; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1381764923877; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 1700373104084171809; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 3560015766058835819; mqVersion 275; checksumv 0 3 3950647407 null getNumChars 146 numChars 146 getNumTaxa 148 numTaxa 148 short false bits 2305843009213956095 states 262143 sumSquaresStatesOnly 2.13449668201E11 sumSquares 4.6116862318770002E18 longCompressibleToShort false usingShortMatrix false NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState true false 206; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 802 630; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; desuppress; endTell; endTell; end;