NEXUS
[File created by TreeBASE:  7/26/07  21:07:51]
[Matrix accession#: M2223]

BEGIN TAXA;
	TITLE M2223;
	DIMENSIONS  NTAX=14;
	TAXLABELS
		Charianthus_alpinus	Charianthus_corymbosus	Charianthus_dominicensis	Charianthus_grenadensis	Charianthus_nodosus	Charianthus_purpureus	Clidemia_guadalupensis	Graffenrieda_latifolia	Leandra_lima	Miconia_howardiana	Miconia_laevigata	Tetrazygia_bicolor	Tetrazygia_crotonifolia	Tetrazygia_fadyenii
	;
END;

BEGIN CHARACTERS;
	TITLE M2223;
	DIMENSIONS NCHAR=776;
	FORMAT DATATYPE = standard MISSING = ? GAP = - symbols = " 0 1 2 3 4 5 6 a t c g r y k m s w n " ;
	MATRIX
		Charianthus_alpinus            GCGGAAGGATCATTGTCGAAATCGAACGGAAGAACGACCCGCGAATCGTCMCAGCTAACTAGACAGAGCCCGTGAGCACCTAACGCTCATGGGGCTCGCGTCGCGTCGACGCGGGTGT-CCTCG-AGACCCGCGTCGTACCGGCGGACAAACAACCTCAGCACGGATCGTGCCAAGGAGCTGCATGGAGAGAATCGTCGTCCCACGCCCTCGATAGTCCTCGACGCGGGACGGGGG-------ATGCACGCAA-TCTCTACTCGA--GTCTAAACGACTCTCGGCAACGGATATCTCGGCTCTTGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCAATTCTTTGAACGCAAGTTGCGCCCGAAGCCATTCGGCCGAGGGCACGCCTGCCTGGGTGTCGTGAATCCCCTTGCCCCTAGGCACCC-GCATGAGCATTGGCGGGGA---TGTATGCTCGGGCGCAGAACATGGTCTCCCGTGGGATCGGCATGCACGGCATGTCGAGGTGCGGTTGGCCGAAAATCGAGC-ATGACGGTGACGGGCACCACGGCGTTCGGTGG-ATCGAATGAGATTGGCTGCGCCGTGGGCTCGGCATGCGGCGGGCT-CCGGACTTCGAGTATATACCCGAGCGCGATCCCAGGTCAGGCGGGGCTACCCGCTGAGTTTAAG100000?1001000000100000(01)100002110330001000101??002000331?221100010101110
		Charianthus_corymbosus         GCGGAAGGATCATTGTCGAAATCGAACGGAAGAACGACCCGCGAATCGTCACAGCTAACTGGACTGAGCCCGTGAGCACCTAACGCTCATGGGGCTCGCGTCGCGTCGACGCGGGTGT-CCTCG-AGACCCGCGTCGTACCGGCGGACAAACAACGTCAGCACGGATCGTGCCAAGGAGCTGCATGGAGAGAATCGTCGTCCCACGCCCTTGATAGTCCTCGACGCGGGACGGGGG-------ATGCACGCAA-TCTCTACTCGA--GTCTAAACGACTCTCGGCAACGGATATCTCGGCTCTTGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCAATTCTTTGAACGCAAGTTGCGCCCGAAGCCATTCGGCCGAGGGCACGCCTGCCTGGGTGTCGTGAATCCCCTTGCCCCTAGGCACCC-GCATGAGCATTGGCGGGGA---TGTATGCTCGGGCGCAGAACATGGTCTCCCGTGGGATCGGCATGCACGGCATGTCGAGGTGCGGTTGGCCGAAAATCGAGC-ATGACGGTGACGGGCACCACGGCGTTCGGTGG-ATCGAATGAGATTGGCTGCGCCGTGGGCTCGGCATGCGGCGGGCT-CCGGACTTCGAGTATATACCCGAGCGCGATCCCAGGTCAGGCGGGGCTACCCGCTGAGTTTAAG100000?100100000000000011000021(12)0030001001101??001000231?221100010001110
		Charianthus_dominicensis       GCGGAAGGATCATTGTCGAAATCGAACGGAAGAACGACCCGCGAATCGTCACAGCTAACTGGACAGAGCCCGTGAGCACCTAACGCTCATGGGGCTCGCGYCGCGTCGACGCGGGTGT-CCTCG-AGACCCGCGTCGTACCGGCGGACAAACAACGTCAGCACGGATCGTGCCAAGGAGCTGCATGGAGAGAATCGTCGTCCCACGCCCTTGATAGTCCTCGACGCGGGACGGGGG-------ATGCACGCAA-TCTCTACTCGA--GTCTAAACGACTCTCGGCAACGGATATCTCGGCTCTTGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCAATTCTTTGAACGCAAGTTGCGCCCGAAGCCATTCGGCCGAGGGCACGCCTGCCTGGGTGTCGTGAATCCCCTTGCCCCTAGGCACCC-GCATGAGCATTGGCGGGGA---TGTATGCTCGGGCGCAGAACATGGTCTCCCGTGGGATCGGCATGCACGGCATGTCGAGGTGCGGTTGGCCGAAAATCGAGC-ATGACGGTGACGGGCACCACGGCGTTCGGTGG-ATCGAATGAGATTGGCTGCGCCGTGGGCTCGGCATGCGGCGGGCT-CCGGACTTCGAGTATATACCCGAGCGCGATCCCAGGTCAGGCGGGGCTACCCGCTGAGTTTAAG100001010(01)001000100100011000021(12)0030001001101??001000231?221100010001110
		Charianthus_grenadensis        GCGGAAGGATCATTGTCGAAATCGAACGGAAGAACGACCCGCGAATCGTCACAGCTAACTAGACAGAGCCCGTGAGCACCTAACGCTCATGGGGCTCGCGTCGCGTCG?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????CGGCAACGGATATCTCGGCTCTTGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCAATTCTTTGAACGCAAGTTGCGCCCGAAGCCATTCGGCCGAGGGCACGCCTGCCTGGGTGTCGTGAATCCCCTTGCCCCTAGGCACCC-GCATGAGCATTGGCGGGGA---TGTATGCTCGGGCGCAGAACATGGTCTCCCGTGGGATCGGCATGCACGGCATGTCGAGGTGCGGTTGGCCGAAAATCGAGC-ATGACGGTGACGGGCACCACGGCGTTCGGTGG-ATCGAATGAGATTGGCTGC???????????????????????????????????????????????????????????????????????????????????????????1000011100100000100000011000021(12)0330001000101??002000331?221100210101110
		Charianthus_nodosus            GCGGAAGGATCATTGTCGAAATCGAACGGAAGAACGACCCGCGAATCGTCACAGCTAACTAGACAGAGCCCGTGAGCACCTAACGCTCATGGGGCTCGCGTCGCGTCGACGCGGGTGT-CCTCG-AGACCCGCGTCGTACCGGCGGACAAACAACGTCAGCACGGATCGTGCCAAGGAGCTGCATGGAGAGAATCGTCGTCCCACGCCCTTGATAGTCCTCGACGCGGGACGGGGG-------ATGCACGCGA-TCTCTACTCGA--GTCTAAACGACTCTCGGCAACGGATATCTCGGCTCTTGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCAATTCTTTGAACGCAAGTTGCGCCCGAAGCCATTCGGCCGAGGGCACGCCTGCCTGGGTGTCGTGAATCCCCTTGCCCCTAGGCACCC-GCATGAGCATTGGCGGGGA---TGTATGCTCGGGCGCAGAACATGGTCTCCCGTGGGATCGGCATGCACGGCATGTCGAGGTGCGGTTGGCCGAAAATCGAGC-ATGACGGTGACGGGCACCACGGCGTTCGGTGG-ATCGAATGAGATTGGCTGCGCCGTGGGCTCGGCATGCGGCGGGCT-CCGGACTTCGAGTATATACCCGAGCGCGATCCCAGGTCAGGCGGGGCTACCCGCTGAGTTTAAG100001210101000011000114100002110330001000101??002000331?221211110001110
		Charianthus_purpureus          GCGGAAGGATCATTGTCGAAATCGAACGGAAGAACGACCCGCGAATCGTCACAGCTAACTGGACAGAGCCCGTGAGCACCTAACGCTCATGGGGCTCGCGTCGCGTCGACGCGGGTGT-CCTCG-AGACCCGCGTCGTACCGGCGGACAAACAACGTCAGCACGGATCGTGCCAAGGAGCTGCATGGAGAGAATCGTCGTCCCACGCCCTTGATAGTCCTCrACGCG??????????????????????????????????????????????????????CGGCAACGGATATCTCGGCTCTTGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCAATTCTTTGAACGCAAGTTGCGCCCGAAGCCATTCGGCCGAGGGCACGCCTGCCTGGGTGTCGTGAATCCCCTTGCCCCTAGGCACCC-GCATGAGCATTGGCGGGGA---TGTATGCTCGGGCGCAGAACATGGTCTCCCGTGGGATCGGCATGCACGGCATGTCGAGGTGCGGTTGGCCGAAAATCGAGC-ATGACGGTGACGGGCACCACGGCGTTCGGTGG-ATCGAATGAGATTGGCTGCGCCGTGGGCTCGGCATGCGGCGGGCT-CCGGACTTCGAGTATATACCCGAGCGCGATCCCAGGTCAGGCGGG???????????????????100001210(01)010000100(01)0001100002110330001000101??002000331?221100010001110
		Clidemia_guadalupensis         GCGGAAGGATCATTGTCGAAATCGAACGGAAGAACGACCCGCGAATCGTCATTGCGTACTAGACAGAGCCCAAGAGCACCTAACGCTCATGGGGCTCGCGTCGTGTCGGCGCGGGTGT-CCTCG-AGACCCGCGTCGTACCGGCGGACAAACAATGTCAGCACGGATCGTGCCAAGGAGCTTTATTGAGAGAATCGTCGTCCCACGCCTTTGATAGTCCTCGATGCGCGACGGGGGGCGGGGGACGTACGCAA-TCTCTACCCAA-AGTCTAAACGACTCTCGGCAACGGATATCTCGGCTCTTGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGCGAACCATCAATTCTTTGAACGCAAGTTGCGCCCGAAGCCTTACGGCCGAGGGCACGCCTGCCTGGGTGTCGTGAATCCCCTTGCCCCTAGGCACCC-GCATGAGCATTGGCGGG---TAT-TATGCTCGGGCGCAGAATGTGGTCTCCCGTTGGACTGGCATGCACGGCATGTCGAGGTGCGGTTGGCCGAAAATCGAGC-ATGGCGGTGACGGGCACCACGGCGTTCGGTGG-ATCGAATGAGATTGGCTGCGCCGTGGGCTCGGCATGCGGCGGGCT-CTGGACTTTGAATAT--CCCCGAGTGCGATCCCAGGTCAGGCGGGGCTACCCGCTGAGTtTAAG1000112?0200000000000323100000000210001100011??00010013001211302100?1110
		Graffenrieda_latifolia         GCGGAAGGATCATTGTCGAAATCGAACGGAAGAACGACCCGCGAACCGTCACCGCGTACTAGAGAGACCTCGTGAGCACCCAAAGCGCACGCGGCTCGCGTCGCGTCGGCGCGGGAGT-ACTAG-AGACCCGCGTCGTACCGGCGAACGAACAACTTCAGCACGGATCGTGCCAAGGAGCTGCATTTTGAGAATCGTCGTCCCACGCCCCC-ATCGTCCTCGATGCGGGACGGGGG-------ATGCACGCAA-TCTCTGATAAG--GTCTGAACGACTCTCGGCAACGGATATCTCGGCTCTTGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGCGAACCATCAATTCTTTGAACGCAAGTTGCGCCCGAAGCCATTCGGCCGAGGGCACGCCTGCCTGGGTGTCGTGAATCCCCTTGCCCCTAGTCACCC-GCACGAGCATCGGCGGGGATTATATACGCGAGGGCGCAGAATATGGTCTCCCGTGGGATCGGCATGCGCGGCATGCCGAGGCGCGGTTGGCCGAAAATCGAGC-ATGGCGGTGACGGGCACCACGGCGTCGGGTGGGATCGAACGAGATTGGCCGCGTCGTGGTCTCGGCATGCTGCGGGCT-CCGGACTTTGGCAAT--CCCCGAGTACGATCCCAGGTCAGGCGgggATACCCGCTGAGTtTAAG000000??0000000000000000000000000000000?00000000000000000000000000010000
		Leandra_lima                   GCGGAAGGATCATTGTCGAAATCGAACGGAAGAACGACCCGCGAATCGTCATTGCTCACTAGACAGAGCCCGTGAGCGCCTAGCGCTCATGGGGCTCGCGTCGCGTCGGCGCGGGTGT-CCTCG-AGACCCGCGTCGTACCGGCGGACAAACAACGTCAGCACGGATCGTGCCAAGGAGCTGCATGGAGAGAATCGTCGTCCCACGTCCTCGAT----------GCGGGACGGGGG-------ATGTACGCAA-TCTCTACTCAA--GTCTAAACGACTCTCGGCAACGGATATCTCGGCTCTTGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCAATTCTTTGAACGCAAGTTGCGCCCGAAGCCATTCGGCCGAGGGCACGCCTGCCTGGGCGTCGTGAATCCCCTTGCCCCTAGGCACCC-GCATGAGCATTGGCGGGGA-TAT--ATGCTGGGGCGCAGAACATGGTCTCCCGTGGGATCGGCATGCACGGCATGACGAGGTGCGGTTGGCCGAAAATCGAGC-ATGGCGGTGACGGGCACCACGGCGTTCGGTGG-ATCGAATGA?ATTGGCTGC-CCGTGGGCTCGGCATGCGGCGG-CTTCCGGACTTTGAATAT--?CCCGAGTGCGATCCCA?GTCA?GCGGGGCTACCCGTTGAGTTTAAG1001012?030001002201020210011000212210101101001000410131?2211201000?1110
		Miconia_howardiana             GCGGAAGGATCATTGTCGAAATCGAACGGAAGAACGACCCGCGAATCGTCATTGCGTACTAGACAGAGCCCGTGAGCACCTAACGCTCATGGGACTCGCGTCGCGTCGGCGTGGGTGT-ACTCG-AGACCAGCGTCGTACCGGCGGACAAACAACGTCAGCACGGATCGTGCCAAGGAGCTGCATGGAGAGAATCGTCGTCCCACGCCTTTGATAGTCCTCGATGCGGGACGGGGGGCGGGGGATGTAC-CA--TCTCTACTCAA--GTCTAAaCGACTCTCGGCAACGGATATCTCGGCTCTTGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGCGAACCATCAATTCTTTGAACGCAAGTTGCGCCCGAAGCCATTCGGCCGAGGGCACGCCTGCCTGGGTGTCGTGAATCCCCTTGCCCCTAGGCACCC-GCATGAGCATTGGCGGGGA---TATATGCTCGGGCGCAGAATATGGTCTCCCGTGGGATCGGCATGCACGGCATGTCGAGGTGCGGTTGGCCGAAAATCGAGCAATGGCTGTGACGGGCACCACGGCGTTCGGTGG-ATCGAATGAGATTGGCTGCGCCGTGGGCTCGGCATTAGGCGGGCT-CCGGACTTTGAGTAT--CCCCGAGTACGATCCCAGGTCAGGCGGGGCTACCCGCTGAGTtTAAG1001012?00000001300100021100120(13)0000001010101??0012201102231??0201011110
		Miconia_laevigata              GCGGAAGGATCATTGTCGAAATCGAACGGAAGAACGACCCGCGAATCGTCGTTGCGTACTAGACAGAGCCCGTGAGCACCTAACGCTCATGGGGCTCGCGTCGCGTCGGCGCGGGTGTGCACTGGAGACCCGCGTCGTACCGGCGGACAAACAATGTCAGCACGGATCGTGCCAAGGAGCTTTATGGAGAGAATCGTCGTCCCACGCCTTTGGTGGTCCTCGATGCGGGACGGGGGGCGAGGGATGTACGCAA-TCTCTACTCGA--GTCAAAACGACTCTCGGCAACGGATATCTCGGCTCTTGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGCGAACCATCAATTCTTTGAACGCAAGTTGCGCCCGAAGCCATTCGGCCGAGGGCACGCCTGCCTGGGTGTCGTGAATCCCCTTGCCCTTGGGCACCCCGCATGAGCATTGGCGGGGA---TATACGCTCGGGCGCAGAATATGGTCTCCCGTGGGATCGGCATGCACGGCATGTCGAGGTGCGGTTGGCCGAAAATCGAGC-ATGGCGGTGACGGGCACCACGGCGTTCGGTGG-ATCGAATGAGATTGGCTGCGTCGTGGGCTCGGCATGCGGCGGGCT-CCGGACTTTGAATAT--CCCCGAGTGCGATCCCAGGTCAGGCGGGGCTAC?CGCTGAGTTTAA?1000014?00000000010100021000110(03)0120001010000020100001100111000101011110
		Tetrazygia_bicolor             GCGGAAGGATCATTGTCGAAATCGAACGGAAGAACGACCCGCGAACCGTCATTGCTTACTAGACAGAGCCCGTGAGCGCCTAACGCTCGTGGGGCTCGCGCCGCGTCGGCGCGGGTGT-CCTCG-AGACCCGCGTCGTACCGGCGGACAAACAACGTCAGCACGGATCGTGCCAAGGAGCTGCAAGGAGAGAATCGTCGTCCCACGCCTTTGATAGTCCTCGACGCGGGACGGGGG-------ACGTACGCAAATCTCTACTCAAAAGTCTAAACGACTCTCGGCAACGGATATCTCGGCTCTTGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCAATTCTTTGAACGCAAGTTGCGCCCGAAGCCATTCGGCCGAGGGCACGCCTGCCTGGGTGTCGTGAATCCCCTTGCCCCTAGGCACCCCGCATGAGCATTGGCGGGGA-TATATATGCTCGGGCGCAGAACATGGTCTCCCGTGGGATCGGCATGCACGGCACGTCGAGCTGCGGTTGGCCGAAAATCGAGC-ATGGCGGTGACGAGCACCGCGGCGTTCGGTGG-ATCGAATCAGATTGGCTGCGCCGTGGGCTCGGCATGCGGCGGGCT-CCGGACTTTGAATAT--CCCCGAGTGCGATCCCAGGTCAGGCGGGGCTACCCGCTGAGTTTAAG101000??1000000002001000101012001001011010021??10000022002111001000?1110
		Tetrazygia_crotonifolia        GCGGAAGGATCATTGTCGAAATCGAACGGAAGAACGACCCGCGAATCGTCATTGCTTACTAGACAGAGCCCGTGAGCACCTAACGCTCATGGGGCTCGCGTCGCGTCGGCGCGGGTGT-CCTCG-AGACCCGCGTCGTACCGGCGGACAAACAACGTCAGCACGGATCGTGCCAAGGAGCTGCACGGAGAGAATCGTCGTCCCACGCCTTTGATAGTCCTCGACGCGGGACGGGGG-------ACGTACGCAA-TCTCTACTCAA--GTCTAAACGACTCTCGGCAACGGATATCTCGGCTCTTGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCAATTCTTTGAACGCAAGTTGCGCCCGAAGCCATTCGGCCGAGGGCACGCCTGCCTGGGTGTCGTGAATCCCCTTGCCCCTAGGCACCC-GCACGAGCATTGGC--------------CTCGGGCGCAGAACATGGTCTCCCGCGGGATCGGCATGCACGGCATGTCGAGGTGCGGTTGGCCGAAAATCGAGC-ATGGCGGTGACGGGCACCACGGCGTTCGGTGG-ATCGAATGAGATTGGCTGCGCCGTGGGCTCGGCATGCGGCGGGCT-CCGGACTTTGAATAT--CCCCGAGAACGATCCCAGGTCAGGCGGGACTACCCGCTGAGTTTAAG110101301000001002110000100001001000011002011??10100113002211002000?1111
		Tetrazygia_fadyenii            GCGGAAGGATCATTGTCGAAATCGAACGGAAGAACGACCCGCGAATCGTCATTGCTTACTAGACAGAGCCCGTGAGCACCTAACGCTCATGGGGCTCGCGCCGCGTCGGCGCGGGTGT-CCTCG-AGACCCGCGTCGTACCGGCGGACAAACAACGTCAGCACGGATCGTGCCAAGGAGCCGCAAGGAGAGAATCGTCGTCCCACGCCTTTGATAGTCCTCGACGCGGGACGGGGG-------ACGTACGCAA-TCTCTACTCAAAAGTCTAAACGACTCTCGGCAACGGATATCTCGGCTCTTGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCAATTCTTTGAACGCAAGTTGCGCCCGAAGCCATTCGGCCGAGGGCACGCCTGCCTGGGTGTCGTGAATCCCCTTGCCCCTAGGCACCC-GCATGAGCATTGGCGGGGA---TATATGCTCGGGCGCAGAACATGGTCTCCCGTGGGATCGGCATGCACGGCATGTCGAGGTGCGGTTGGCCGAAAATCGAGC-ATGGCGGTGACGGGCACCACGGCGTTCGGTGG-ATCGAATCAGATTGGCTGCGCCGTGGGCTCGGCATGCGGCGGGCT-CCGGACTTTGAATAT--CCCCGAGTGCGATCCCAGGTCAGGCGGGGCTACCCGCTGAGTTTAAG100000?000100000020010001000000113010110000201?1010003301201100001001110
	;
END;

BEGIN CODONS;
CODESET * UNTITLED = Universal.ext: all ; 
 END;

BEGIN ASSUMPTIONS;
OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; 
 
 EXSET morphology = 1 - 704 ; 
 EXSET ITS = 705 - 776 ; 
 
 END;