NEXUS
[File created by TreeBASE:  7/26/07  21:07:51]
[Matrix accession#: M2225]

BEGIN TAXA;
	TITLE M2225;
	DIMENSIONS  NTAX=14;
	TAXLABELS
		Charianthus_alpinus	Charianthus_corymbosus	Charianthus_dominicensis	Charianthus_grenadensis	Charianthus_nodosus	Charianthus_purpureus	Clidemia_guadalupensis	Graffenrieda_latifolia	Leandra_lima	Miconia_howardiana	Miconia_laevigata	Tetrazygia_bicolor	Tetrazygia_crotonifolia	Tetrazygia_fadyenii
	;
END;

BEGIN CHARACTERS;
	TITLE M2225;
	DIMENSIONS NCHAR=704;
	FORMAT DATATYPE = DNA MISSING = ? GAP = - symbols = " 0 1 2 3 4 5 6 " ;
	MATRIX
		Charianthus_alpinus            GCGGAAGGATCATTGTCGAAATCGAACGGAAGAACGACCCGCGAATCGTCMCAGCTAACTAGACAGAGCCCGTGAGCACCTAACGCTCATGGGGCTCGCGTCGCGTCGACGCGGGTGT-CCTCG-AGACCCGCGTCGTACCGGCGGACAAACAACCTCAGCACGGATCGTGCCAAGGAGCTGCATGGAGAGAATCGTCGTCCCACGCCCTCGATAGTCCTCGACGCGGGACGGGGG-------ATGCACGCAA-TCTCTACTCGA--GTCTAAACGACTCTCGGCAACGGATATCTCGGCTCTTGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCAATTCTTTGAACGCAAGTTGCGCCCGAAGCCATTCGGCCGAGGGCACGCCTGCCTGGGTGTCGTGAATCCCCTTGCCCCTAGGCACCC-GCATGAGCATTGGCGGGGA---TGTATGCTCGGGCGCAGAACATGGTCTCCCGTGGGATCGGCATGCACGGCATGTCGAGGTGCGGTTGGCCGAAAATCGAGC-ATGACGGTGACGGGCACCACGGCGTTCGGTGG-ATCGAATGAGATTGGCTGCGCCGTGGGCTCGGCATGCGGCGGGCT-CCGGACTTCGAGTATATACCCGAGCGCGATCCCAGGTCAGGCGGGGCTACCCGCTGAGTTTAAG
		Charianthus_corymbosus         GCGGAAGGATCATTGTCGAAATCGAACGGAAGAACGACCCGCGAATCGTCACAGCTAACTGGACTGAGCCCGTGAGCACCTAACGCTCATGGGGCTCGCGTCGCGTCGACGCGGGTGT-CCTCG-AGACCCGCGTCGTACCGGCGGACAAACAACGTCAGCACGGATCGTGCCAAGGAGCTGCATGGAGAGAATCGTCGTCCCACGCCCTTGATAGTCCTCGACGCGGGACGGGGG-------ATGCACGCAA-TCTCTACTCGA--GTCTAAACGACTCTCGGCAACGGATATCTCGGCTCTTGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCAATTCTTTGAACGCAAGTTGCGCCCGAAGCCATTCGGCCGAGGGCACGCCTGCCTGGGTGTCGTGAATCCCCTTGCCCCTAGGCACCC-GCATGAGCATTGGCGGGGA---TGTATGCTCGGGCGCAGAACATGGTCTCCCGTGGGATCGGCATGCACGGCATGTCGAGGTGCGGTTGGCCGAAAATCGAGC-ATGACGGTGACGGGCACCACGGCGTTCGGTGG-ATCGAATGAGATTGGCTGCGCCGTGGGCTCGGCATGCGGCGGGCT-CCGGACTTCGAGTATATACCCGAGCGCGATCCCAGGTCAGGCGGGGCTACCCGCTGAGTTTAAG
		Charianthus_dominicensis       GCGGAAGGATCATTGTCGAAATCGAACGGAAGAACGACCCGCGAATCGTCACAGCTAACTGGACAGAGCCCGTGAGCACCTAACGCTCATGGGGCTCGCGYCGCGTCGACGCGGGTGT-CCTCG-AGACCCGCGTCGTACCGGCGGACAAACAACGTCAGCACGGATCGTGCCAAGGAGCTGCATGGAGAGAATCGTCGTCCCACGCCCTTGATAGTCCTCGACGCGGGACGGGGG-------ATGCACGCAA-TCTCTACTCGA--GTCTAAACGACTCTCGGCAACGGATATCTCGGCTCTTGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCAATTCTTTGAACGCAAGTTGCGCCCGAAGCCATTCGGCCGAGGGCACGCCTGCCTGGGTGTCGTGAATCCCCTTGCCCCTAGGCACCC-GCATGAGCATTGGCGGGGA---TGTATGCTCGGGCGCAGAACATGGTCTCCCGTGGGATCGGCATGCACGGCATGTCGAGGTGCGGTTGGCCGAAAATCGAGC-ATGACGGTGACGGGCACCACGGCGTTCGGTGG-ATCGAATGAGATTGGCTGCGCCGTGGGCTCGGCATGCGGCGGGCT-CCGGACTTCGAGTATATACCCGAGCGCGATCCCAGGTCAGGCGGGGCTACCCGCTGAGTTTAAG
		Charianthus_grenadensis        GCGGAAGGATCATTGTCGAAATCGAACGGAAGAACGACCCGCGAATCGTCACAGCTAACTAGACAGAGCCCGTGAGCACCTAACGCTCATGGGGCTCGCGTCGCGTCG?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????CGGCAACGGATATCTCGGCTCTTGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCAATTCTTTGAACGCAAGTTGCGCCCGAAGCCATTCGGCCGAGGGCACGCCTGCCTGGGTGTCGTGAATCCCCTTGCCCCTAGGCACCC-GCATGAGCATTGGCGGGGA---TGTATGCTCGGGCGCAGAACATGGTCTCCCGTGGGATCGGCATGCACGGCATGTCGAGGTGCGGTTGGCCGAAAATCGAGC-ATGACGGTGACGGGCACCACGGCGTTCGGTGG-ATCGAATGAGATTGGCTGC???????????????????????????????????????????????????????????????????????????????????????????
		Charianthus_nodosus            GCGGAAGGATCATTGTCGAAATCGAACGGAAGAACGACCCGCGAATCGTCACAGCTAACTAGACAGAGCCCGTGAGCACCTAACGCTCATGGGGCTCGCGTCGCGTCGACGCGGGTGT-CCTCG-AGACCCGCGTCGTACCGGCGGACAAACAACGTCAGCACGGATCGTGCCAAGGAGCTGCATGGAGAGAATCGTCGTCCCACGCCCTTGATAGTCCTCGACGCGGGACGGGGG-------ATGCACGCGA-TCTCTACTCGA--GTCTAAACGACTCTCGGCAACGGATATCTCGGCTCTTGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCAATTCTTTGAACGCAAGTTGCGCCCGAAGCCATTCGGCCGAGGGCACGCCTGCCTGGGTGTCGTGAATCCCCTTGCCCCTAGGCACCC-GCATGAGCATTGGCGGGGA---TGTATGCTCGGGCGCAGAACATGGTCTCCCGTGGGATCGGCATGCACGGCATGTCGAGGTGCGGTTGGCCGAAAATCGAGC-ATGACGGTGACGGGCACCACGGCGTTCGGTGG-ATCGAATGAGATTGGCTGCGCCGTGGGCTCGGCATGCGGCGGGCT-CCGGACTTCGAGTATATACCCGAGCGCGATCCCAGGTCAGGCGGGGCTACCCGCTGAGTTTAAG
		Charianthus_purpureus          GCGGAAGGATCATTGTCGAAATCGAACGGAAGAACGACCCGCGAATCGTCACAGCTAACTGGACAGAGCCCGTGAGCACCTAACGCTCATGGGGCTCGCGTCGCGTCGACGCGGGTGT-CCTCG-AGACCCGCGTCGTACCGGCGGACAAACAACGTCAGCACGGATCGTGCCAAGGAGCTGCATGGAGAGAATCGTCGTCCCACGCCCTTGATAGTCCTCrACGCGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCGGCAACGGATATCTCGGCTCTTGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCAATTCTTTGAACGCAAGTTGCGCCCGAAGCCATTCGGCCGAGGGCACGCCTGCCTGGGTGTCGTGAATCCCCTTGCCCCTAGGCACCC-GCATGAGCATTGGCGGGGA---TGTATGCTCGGGCGCAGAACATGGTCTCCCGTGGGATCGGCATGCACGGCATGTCGAGGTGCGGTTGGCCGAAAATCGAGC-ATGACGGTGACGGGCACCACGGCGTTCGGTGG-ATCGAATGAGATTGGCTGCGCCGTGGGCTCGGCATGCGGCGGGCT-CCGGACTTCGAGTATATACCCGAGCGCGATCCCAGGTCAGGCGGG???????????????????
		Clidemia_guadalupensis         GCGGAAGGATCATTGTCGAAATCGAACGGAAGAACGACCCGCGAATCGTCATTGCGTACTAGACAGAGCCCAAGAGCACCTAACGCTCATGGGGCTCGCGTCGTGTCGGCGCGGGTGT-CCTCG-AGACCCGCGTCGTACCGGCGGACAAACAATGTCAGCACGGATCGTGCCAAGGAGCTTTATTGAGAGAATCGTCGTCCCACGCCTTTGATAGTCCTCGATGCGCGACGGGGGGCGGGGGACGTACGCAA-TCTCTACCCAA-AGTCTAAACGACTCTCGGCAACGGATATCTCGGCTCTTGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGCGAACCATCAATTCTTTGAACGCAAGTTGCGCCCGAAGCCTTACGGCCGAGGGCACGCCTGCCTGGGTGTCGTGAATCCCCTTGCCCCTAGGCACCC-GCATGAGCATTGGCGGG---TAT-TATGCTCGGGCGCAGAATGTGGTCTCCCGTTGGACTGGCATGCACGGCATGTCGAGGTGCGGTTGGCCGAAAATCGAGC-ATGGCGGTGACGGGCACCACGGCGTTCGGTGG-ATCGAATGAGATTGGCTGCGCCGTGGGCTCGGCATGCGGCGGGCT-CTGGACTTTGAATAT--CCCCGAGTGCGATCCCAGGTCAGGCGGGGCTACCCGCTGAGTtTAAG
		Graffenrieda_latifolia         GCGGAAGGATCATTGTCGAAATCGAACGGAAGAACGACCCGCGAACCGTCACCGCGTACTAGAGAGACCTCGTGAGCACCCAAAGCGCACGCGGCTCGCGTCGCGTCGGCGCGGGAGT-ACTAG-AGACCCGCGTCGTACCGGCGAACGAACAACTTCAGCACGGATCGTGCCAAGGAGCTGCATTTTGAGAATCGTCGTCCCACGCCCCC-ATCGTCCTCGATGCGGGACGGGGG-------ATGCACGCAA-TCTCTGATAAG--GTCTGAACGACTCTCGGCAACGGATATCTCGGCTCTTGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGCGAACCATCAATTCTTTGAACGCAAGTTGCGCCCGAAGCCATTCGGCCGAGGGCACGCCTGCCTGGGTGTCGTGAATCCCCTTGCCCCTAGTCACCC-GCACGAGCATCGGCGGGGATTATATACGCGAGGGCGCAGAATATGGTCTCCCGTGGGATCGGCATGCGCGGCATGCCGAGGCGCGGTTGGCCGAAAATCGAGC-ATGGCGGTGACGGGCACCACGGCGTCGGGTGGGATCGAACGAGATTGGCCGCGTCGTGGTCTCGGCATGCTGCGGGCT-CCGGACTTTGGCAAT--CCCCGAGTACGATCCCAGGTCAGGCGgggATACCCGCTGAGTtTAAG
		Leandra_lima                   GCGGAAGGATCATTGTCGAAATCGAACGGAAGAACGACCCGCGAATCGTCATTGCTCACTAGACAGAGCCCGTGAGCGCCTAGCGCTCATGGGGCTCGCGTCGCGTCGGCGCGGGTGT-CCTCG-AGACCCGCGTCGTACCGGCGGACAAACAACGTCAGCACGGATCGTGCCAAGGAGCTGCATGGAGAGAATCGTCGTCCCACGTCCTCGAT----------GCGGGACGGGGG-------ATGTACGCAA-TCTCTACTCAA--GTCTAAACGACTCTCGGCAACGGATATCTCGGCTCTTGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCAATTCTTTGAACGCAAGTTGCGCCCGAAGCCATTCGGCCGAGGGCACGCCTGCCTGGGCGTCGTGAATCCCCTTGCCCCTAGGCACCC-GCATGAGCATTGGCGGGGA-TAT--ATGCTGGGGCGCAGAACATGGTCTCCCGTGGGATCGGCATGCACGGCATGACGAGGTGCGGTTGGCCGAAAATCGAGC-ATGGCGGTGACGGGCACCACGGCGTTCGGTGG-ATCGAATGA?ATTGGCTGC-CCGTGGGCTCGGCATGCGGCGG-CTTCCGGACTTTGAATAT--?CCCGAGTGCGATCCCA?GTCA?GCGGGGCTACCCGTTGAGTTTAAG
		Miconia_howardiana             GCGGAAGGATCATTGTCGAAATCGAACGGAAGAACGACCCGCGAATCGTCATTGCGTACTAGACAGAGCCCGTGAGCACCTAACGCTCATGGGACTCGCGTCGCGTCGGCGTGGGTGT-ACTCG-AGACCAGCGTCGTACCGGCGGACAAACAACGTCAGCACGGATCGTGCCAAGGAGCTGCATGGAGAGAATCGTCGTCCCACGCCTTTGATAGTCCTCGATGCGGGACGGGGGGCGGGGGATGTAC-CA--TCTCTACTCAA--GTCTAAaCGACTCTCGGCAACGGATATCTCGGCTCTTGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGCGAACCATCAATTCTTTGAACGCAAGTTGCGCCCGAAGCCATTCGGCCGAGGGCACGCCTGCCTGGGTGTCGTGAATCCCCTTGCCCCTAGGCACCC-GCATGAGCATTGGCGGGGA---TATATGCTCGGGCGCAGAATATGGTCTCCCGTGGGATCGGCATGCACGGCATGTCGAGGTGCGGTTGGCCGAAAATCGAGCAATGGCTGTGACGGGCACCACGGCGTTCGGTGG-ATCGAATGAGATTGGCTGCGCCGTGGGCTCGGCATTAGGCGGGCT-CCGGACTTTGAGTAT--CCCCGAGTACGATCCCAGGTCAGGCGGGGCTACCCGCTGAGTtTAAG
		Miconia_laevigata              GCGGAAGGATCATTGTCGAAATCGAACGGAAGAACGACCCGCGAATCGTCGTTGCGTACTAGACAGAGCCCGTGAGCACCTAACGCTCATGGGGCTCGCGTCGCGTCGGCGCGGGTGTGCACTGGAGACCCGCGTCGTACCGGCGGACAAACAATGTCAGCACGGATCGTGCCAAGGAGCTTTATGGAGAGAATCGTCGTCCCACGCCTTTGGTGGTCCTCGATGCGGGACGGGGGGCGAGGGATGTACGCAA-TCTCTACTCGA--GTCAAAACGACTCTCGGCAACGGATATCTCGGCTCTTGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGCGAACCATCAATTCTTTGAACGCAAGTTGCGCCCGAAGCCATTCGGCCGAGGGCACGCCTGCCTGGGTGTCGTGAATCCCCTTGCCCTTGGGCACCCCGCATGAGCATTGGCGGGGA---TATACGCTCGGGCGCAGAATATGGTCTCCCGTGGGATCGGCATGCACGGCATGTCGAGGTGCGGTTGGCCGAAAATCGAGC-ATGGCGGTGACGGGCACCACGGCGTTCGGTGG-ATCGAATGAGATTGGCTGCGTCGTGGGCTCGGCATGCGGCGGGCT-CCGGACTTTGAATAT--CCCCGAGTGCGATCCCAGGTCAGGCGGGGCTAC?CGCTGAGTTTAA?
		Tetrazygia_bicolor             GCGGAAGGATCATTGTCGAAATCGAACGGAAGAACGACCCGCGAACCGTCATTGCTTACTAGACAGAGCCCGTGAGCGCCTAACGCTCGTGGGGCTCGCGCCGCGTCGGCGCGGGTGT-CCTCG-AGACCCGCGTCGTACCGGCGGACAAACAACGTCAGCACGGATCGTGCCAAGGAGCTGCAAGGAGAGAATCGTCGTCCCACGCCTTTGATAGTCCTCGACGCGGGACGGGGG-------ACGTACGCAAATCTCTACTCAAAAGTCTAAACGACTCTCGGCAACGGATATCTCGGCTCTTGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCAATTCTTTGAACGCAAGTTGCGCCCGAAGCCATTCGGCCGAGGGCACGCCTGCCTGGGTGTCGTGAATCCCCTTGCCCCTAGGCACCCCGCATGAGCATTGGCGGGGA-TATATATGCTCGGGCGCAGAACATGGTCTCCCGTGGGATCGGCATGCACGGCACGTCGAGCTGCGGTTGGCCGAAAATCGAGC-ATGGCGGTGACGAGCACCGCGGCGTTCGGTGG-ATCGAATCAGATTGGCTGCGCCGTGGGCTCGGCATGCGGCGGGCT-CCGGACTTTGAATAT--CCCCGAGTGCGATCCCAGGTCAGGCGGGGCTACCCGCTGAGTTTAAG
		Tetrazygia_crotonifolia        GCGGAAGGATCATTGTCGAAATCGAACGGAAGAACGACCCGCGAATCGTCATTGCTTACTAGACAGAGCCCGTGAGCACCTAACGCTCATGGGGCTCGCGTCGCGTCGGCGCGGGTGT-CCTCG-AGACCCGCGTCGTACCGGCGGACAAACAACGTCAGCACGGATCGTGCCAAGGAGCTGCACGGAGAGAATCGTCGTCCCACGCCTTTGATAGTCCTCGACGCGGGACGGGGG-------ACGTACGCAA-TCTCTACTCAA--GTCTAAACGACTCTCGGCAACGGATATCTCGGCTCTTGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCAATTCTTTGAACGCAAGTTGCGCCCGAAGCCATTCGGCCGAGGGCACGCCTGCCTGGGTGTCGTGAATCCCCTTGCCCCTAGGCACCC-GCACGAGCATTGGC--------------CTCGGGCGCAGAACATGGTCTCCCGCGGGATCGGCATGCACGGCATGTCGAGGTGCGGTTGGCCGAAAATCGAGC-ATGGCGGTGACGGGCACCACGGCGTTCGGTGG-ATCGAATGAGATTGGCTGCGCCGTGGGCTCGGCATGCGGCGGGCT-CCGGACTTTGAATAT--CCCCGAGAACGATCCCAGGTCAGGCGGGACTACCCGCTGAGTTTAAG
		Tetrazygia_fadyenii            GCGGAAGGATCATTGTCGAAATCGAACGGAAGAACGACCCGCGAATCGTCATTGCTTACTAGACAGAGCCCGTGAGCACCTAACGCTCATGGGGCTCGCGCCGCGTCGGCGCGGGTGT-CCTCG-AGACCCGCGTCGTACCGGCGGACAAACAACGTCAGCACGGATCGTGCCAAGGAGCCGCAAGGAGAGAATCGTCGTCCCACGCCTTTGATAGTCCTCGACGCGGGACGGGGG-------ACGTACGCAA-TCTCTACTCAAAAGTCTAAACGACTCTCGGCAACGGATATCTCGGCTCTTGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCAATTCTTTGAACGCAAGTTGCGCCCGAAGCCATTCGGCCGAGGGCACGCCTGCCTGGGTGTCGTGAATCCCCTTGCCCCTAGGCACCC-GCATGAGCATTGGCGGGGA---TATATGCTCGGGCGCAGAACATGGTCTCCCGTGGGATCGGCATGCACGGCATGTCGAGGTGCGGTTGGCCGAAAATCGAGC-ATGGCGGTGACGGGCACCACGGCGTTCGGTGG-ATCGAATCAGATTGGCTGCGCCGTGGGCTCGGCATGCGGCGGGCT-CCGGACTTTGAATAT--CCCCGAGTGCGATCCCAGGTCAGGCGGGGCTACCCGCTGAGTTTAAG
	;
END;

BEGIN CODONS;
CODESET * UNTITLED = Universal.ext: all ; 
 END;

BEGIN ASSUMPTIONS;
OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; 
 
 
 
 END;