#NEXUS [MacClade 4.06 registered to Mary Berbee, University of British Columbia] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=99; TAXLABELS Underwoodia_singeri_mes161_Chile Underwoodia_beatonii_JT28375_Australia Underwoodia_beatonii_JT28380_Australia Gymnohydnotrya_echinulata_clar4529 Gymnohydnotrya_australiana_OSC130601 L_C02_EcM_Salix_humboldtiana_Argentina R8M8_7x_EcM_Nothofagus_alpina_Argentina Dingleya_JT31575_Australia Nothojafnia_cf_thaxterii_N10_Argentina Labyrinthomyces_JT27750_Australia Reddellomyces_JT27723_Australia Leppia_JT28813_Australia Leppia_holotype_Australia Reddellomyces_JT27724_Australia Reddellomyces_JT4985_Australia Reddellomyces_JT6873_Australia P5M4_5a_EcM_Nothofagus_obliqua_Argentina L_C04_EcM_Salix_humboldtiana_Argentina Choiromyces_meandriformis_DL_Oregon Choiromyces_alveolatus_97 Choiromyces_alveolatus_HS2886 Choiromyces_meandriformis_RH691_Iowa Tuber_aestivum_JT30500_Sweden Tuber_mesentericum_CW105_Sweden Tuber_aestivum_AF516786_Europe Tuber_aestivum_China_GQ217542 Tuber_gennadii_BM667_Spain Tuber_gennadii_JT9627_Spain_paratype Tuber_gennadii_M1904_Italy Tuber_anniae_JT13209_Washington_holotype Tuber_borchii_GB14_Italy Tuber_borchii_GB1_Italy Tuber_anniae_JT22695_Oregon Tuber_asa_M1828_Italy Tuber_sp_JT28121_Japan Tuber_sp8_K228_Japan Tuber_sp9_K214_Japan Tuber_beyeleri_JT32597_Oregon Tuber_canaliculatum_JT28215_New_Jersey Tuber_canaliculatum_OSC59072_West_Virginia Tuber_bellisporum_JT11679_Oregon_holotype Tuber_bellisporum_JT7270_Oregon_paratype Tuber_castellanoi_JT19924_California_paratype Tuber_castellanoi_JT28069_California_holotype Tuber_gibbosum_JT26632_Washington Tuber_gibbosum_JT30580_Oregon Tuber_oregonense_JT30493_Oregon_paratype Tuber_oregonense_GB284_Oregon_holotype Tuber_oregonense_JT27985_Oregon_paratype Tuber_liaotongense_OSC87602_China Tuber_sancarloensis_ITCV181_Mexico_holotype Tuber_sancarloensis_ITCV885_Mexico Tuber_JT9769_Nepal Tuber_sp_ITCV884_Mexico Tuber_sp_ITCV908_Mexico Tuber_brumale_GB21_Italy Tuber_brumale_GB22_Italy Tuber_californicum_JT28058_California Tuber_cf_borchii_China Tuber_dryophilum_GB35_Italy Tuber_dryophilum_GB37_Italy Tuber_excavatum_BM100_Spain Tuber_excavatum_China_GQ217540 Tuber_excavatum_OSC80639_Italy Tuber_nitidum_BM105_Spain Tuber_ferrugineum_MA2721_Italy Tuber_fulgens_M2435_Italy Tuber_indicum_A_GB236_China Tuber_indicum_A_GB240_China Tuber_indicum_B_GB237_China Tuber_indicum_B_JT29410_Oregon Tuber_lyonii_GA21_Georgia Tuber_lyonii_OSC58244_Texas Tuber_magnatum_GB12_Italy Tuber_magnatum_GB13_Italy Tuber_magnatum_JT19460_Italy Tuber_sp_RH73_Iowa Tuber_sp1_K201_Japan Tuber_sp2_K215_Japan Tuber_sp14_K186_Japan Tuber_macrosporum_JT13362_Italy Tuber_malacodermum_JT32319_Spain Tuber_melanosporum_GB200_Italy Tuber_multimaculatum_OSC62169_Spain_paratype Tuber_panniferum_JT12835_Spain Tuber_pseudoexcavatum_CJ408_China Tuber_regimontanum_ITCV909_Mexico_holotype Tuber_rufum_GB213_Italy Tuber_shearii_JT12498_North_Carolina Tuber_shearii_OSC51052_North_Carolina Tuber_sphaerosporum_JT12487_Oregon Tuber_sphaerosporum_JT19772_Oregon Tuber_sp_JT13224_West_Virginia Tuber_sp_ITCV910_Mexico Tuber_sp_JT32567_Mexico Tuber_sp_JT8755_Florida Tuber_sp_RH8270753_Iowa Tuber_sp_TB10248_New_York Tuber_spinoreticulatum_U188_Maryland_isotype; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=1352; FORMAT DATATYPE=DNA MISSING=? GAP=- ; MATRIX [ 1 ] [ 1 2 3 4 5 6 7 8 9 0 1 2 3 ] [ 1 2 3 4 5 6 7 8 9 0 1 2 3 4 5 6 7 8 9 0 1 2 3 4 5 6 7 8 9 0 1 2 3 4 5 6 7 8 9 0 1 2 3 4 5 6 7 8 9 0 1 2 3 4 5 6 7 8 9 0 1 2 3 4 5 6 7 8 9 0 1 2 3 4 5 6 7 8 9 0 1 2 3 4 5 6 7 8 9 0 1 2 3 4 5 6 7 8 9 0 1 2 3 4 5 6 7 8 9 0 1 2 3 4 5 6 7 8 9 0 1 2 3 4 5 6 7 8 9 0 1 2 3 4 5 ] [ 12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012] Underwoodia_singeri_mes161_Chile ??????????????????????????????????????????????????????????????????????????????????????????????????????????TCATTAACACGACCCGCCAGTGGAAAAGGGACTTGGGCGATCTGGCCTGCTG-----------CTGAGG------------------------TGGCGG-------------CAGTCGTCCTGCCCTGCCCGCCT-----ACCCTCTC--------------CGTGTACCT-CTCCC---TGTTGCTTCCC-CGGGA---------------------CGGCGGACCT-GTCCGCCCGGGCGACGCATGCCCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCACCCTGCCA--------------------------------------------------GCAGGGCGGTTGGGGCGTCTGCGCCCGCGTCGCCTAGGGAAGGT----AC----------CCACCACAC-------------TCCTTCTTGAACA---AGC----TGTC---TGACACG-GG----CC--CAAGGCCCCCAGGTATACAA-----ATACT-TGAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCTCAGGGCATGCCTGTTCGAGCGTCAC-AG--AA--AACCCCTAC--TCACAG-AATGTG-----TGGTGATGGCGTTTGGTG----G----GT----------------------CCCTTCCGGTCCACCGC-GCCCAAATCAAT--GGGCGGACA----ACTGAT--CTCACC--AGCTGACTTGGTAAGATGTATCCTGTTCGACGAAGCGTT-----GAAC------------AGATATCAGTCAGCA-GTGAG----GTTATGT----CCT-----------GCCCCCTCATTTGGACCCCCC-------GAGCAAT-TG----------TCCCCTG----GGTTGACCTCGGATCAGGCMGGGATACCCGCTGA-ACTTAAGCATATCAATAAGCGGAGGAAAA????????????????????????????????????????? [856] Underwoodia_beatonii_JT28375_Australia ??????????????????????????????????????????????????????????????????????????????????????????????????????????TCCGTCTCCAG?ATTTGGAAAAGGGA?CAGGGTGGGGGGA?CCGTCGCCAGG-----------GGGGGAATGCTGGTGGTCGTCCACCTCTTGTGCCCCCCCAGCAACGATGCGCGGTCCACTCACCCGCCCTTACCAAAACCCTGTC--------------CGCGTACCT-CTCCA---TGTTGCTTCCC-CGGGA--------------CCAAGTGCGGAGCCCTTACGGTGGTGATCGGGACCCCTCGTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCACTCGCCGCTGGGACCGAGTACCCCGGGGAAGGTACCCCCCAAAATCAATCGCTCTGAA---------------------------CCAGC----TGTC---TGACACA-GG----CCCACAAGGCCTTTGGTATACAA------ATACTCTCAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTCGGCATTCCTTAGGGCATGCCTGTTCGAGCGTCAC-TA--AA--ACCCCCCC---TCACACTTGCTTG-----TGGTGGTGGCGTCG-GTGG---GTACTGGGAACCGTGAGT-----------CCCCTCTTACCCACCCC-GCCGAAATCGAT--GGGCGGACA----ACTGAT--CTCAGC--TGCTGACTTAGT-----------------------------AAAAATCGACCTTGC------------------------------------------------------------------AGGGCCCCC-----------------------------------------------CGGGCCCGTCAGGCATC??????????????????????????????????????????????????????????????????????????????? [825] Underwoodia_beatonii_JT28380_Australia ???????????????????????????????????????????????????????????????????????????????TAGTCCGTCTCCAGATTTGGAAAGGGATCAGGG------------------------------------TGGGGGGACCCGTCGCCAGGGGGGGAATTGCTGGTGGTCGTCCACCTCTTGTGCCCCCCCAGCAACGATGCGCGGTCCACTCACCCGCCCTTACCAAAACCCTGTC--------------CGCGTACCT-CTCCA---TGTTGCTTCCC-CGGGA--------------CCAAGTGCGGAGCCCTTGCGGTGGTGATCGGGACCCCTCGTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCACTCGCCGCTGGGACCGAGTACCCCGGGGAAGGTACCCCCCAAAATCAATCGCTCTGAA---------------------------CCAGC----TGTC---TGACACA-GG----CCCACAAGGCCTTAGGTATACAA------ATACTCTCAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTCGGCATTCCTTAGGGCATGCCTGTTCGAGCGTCAC-TA--AA--ACCCCCCC---TCACACTTGCTTG-----TGGTGGTGGCGTCG-GTGG---GTACTGGGAACCGTGAGT-----------CCCCTCTTACCCACCCC-GCCGAAATCGAT--GGGCGGACA----ACTGAT--CTCAGC--TGCTGACTTAGTAAAAATCGACCTTGC------AGGGCCCCCCGGGCCCGTCAGGCATCAATCAAACAGTCAGGA-GTTAG----GTTACGT----CCC-----------GTCCCTC????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? [916] Gymnohydnotrya_echinulata_clar4529 ??????????????????????????????????????????????????????TAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTAGTTCACCTCCAGATTTGGAAAAGGGATAAATACGGGTGTGGTGGGATCCTTCGCCCGGTGGGA---TGCTGGTGGATGCCCACCACGTGCCCCCCGGCAACGATTCGCGGTCCCCTCACACCCACCCTTGCCAAACCATGTC--------------CGTGTACCT-CTCCA---TGTTGCTTCCC-CGGGA---------------------CCAGTGGTGGAGCCCGCGCCGTGGTGGACCACTCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCACCCGTCGCAGGGACCCGAGTAACCCCCGGGGAAGGTACCCCCCAAAACAAATCGCTATGAA---------------------------CCAGC----TGTC---TGACACA-GG----CCCACAAGGCCTTAGGTATATAA------ATACACTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCTTAGGGCATGCCTGTTCGAGCGTCAC-TA--AA--ACCCCCCC---TCACACTAGCTTG-----TGGTGGTGGCGTCG-GTGG---GTACCGGGGACCACGCGT-----------CCCCTCCGACCCACCCC-GCCGAAATCGAT--GGGCAGACA----ACTGAT--CTCAGC--AGCTGGCTTAGT-ACAATCGACCTTTCCGGCCCACCAGCCGGTCGGGC------------ATCAATCAGTCAGCA-GTTAG----GTTACGT----CCC-----------GCCCCTCAGTT--GGACCCCC-------ATCCAATGAAGTA-------GACTCTG----GGTTGACCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATCAATA????????????????????????????????????????????????????? [919] Gymnohydnotrya_australiana_OSC130601 ?????????????????????????????????????????????????????????????????????????????????????????????????????????ATCATTA----------------------ACACGTCCCCACAATGGAAAAGGG-----------AGGGGC------------------------AACTCA-------------CAGGCCCCTCCCTTCCAAC---------ACCCTCTC--------------CGCGTACCT-CTCCG---TGTTGCTTCCC-CGGGA---------------------CGACGGTCCC-CTCCGTCCGGTGTCGGACGCCTCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCCCCCCGTCACTCGACGGTCGCGGGTGGCGGCTCCCGTTCCCGAGCTGCCCGGGGAAGGT----AA----------CCCCCAAAC--------------AGAAAATCGCATTTGAACCAGATGTC---TGACGAG-GG----CC--CAGGGCCCGATGTATACAA------ATACT-TGAAAACTTTCAACAACGGATCTCTAGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCTTAGGGCATGCCTGTTCGAGCGTCAC-TA--AA--AGTCCCCCCC-TCACAC-AAGCTG-----TGGTGATGGCGTCG-GTA----GACTTGGCGGTCCCTGCGA----------CCCCTCCCGTCCACCCC-GTCAAAATCGATC--GGCGGACA----ACTGAT--ATCGGC--TGCTGACTTAGTAGAATCGACTCTTGTCGGCCACAGGTCGCG-----C------------AATTGTCAGTCAGGA-GTCGA----GTCGAGT----CCC-----------GCCCCTTCTCC--GGACCCCC-------GTCCAAAC------------ACCTCTG----GGTTGACCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATCAATAAGCGGAGGAAAA????????????????????????????????????????? [855] L_C02_EcM_Salix_humboldtiana_Argentina ???????????????????????????????????????????????????????????????????????????????????????????????????GGAAGGATCATTA---------------------------------------CAAATGT-----------TGAGGG------------------------TGTCCT-------------CAGGG----GCCCCCAAGCAAAC-----ACATGCCT--------------TGTGTATTC-CTCC----TGCCGGTCCCT-CAATC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGCGTCGCAGTAGGGGCTGAGGTGCCCAGCGGAGGG----CC----------CATTTTTAA------------CCCTTTGCTAAACC----------TGTCTCATGAGAT--GG----CC--CCGTGCCAGAATCTTTAA-------ACATT-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGCATTCCTCAGGGCATGCCTGTTCGAGCGTCAC-TA--AC--AACCATC----TCACAT-GCAATG-----TGGTCTTGGCTCAT-GTG----T-ATAGCGCCTCC----------------TGTGCTGACTTCACTAA-GCTGAAATGAATA-GGCCAGATA----AGCAAA-CCATGGC--AACTGACTCACA-G-------------------AGTGTTTAA-CAATG------------CTAAACTAGTCGGTA--CCTG----GTATGAA----TCT-----------GTGCCAGT-----GGACCCCC-CCGTTCATTCAAATGAGACA-----------------TGTTGACCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATCAATAAGCGGAGGA???????????????????????????????????????????? [749] R8M8_7x_EcM_Nothofagus_alpina_Argentina ???????????????????????????????????????????????????????????????????????????????????????????????????GGAAGGATCATTA---------------------------------------CAAATGT-----------TGAGGG------------------------TGTCCT-------------CAGGG----GCCCCCAAGCAAAC-----ACATGCCT--------------TGTGTATTC-CTCC----TGCCGGTCCCT-CAATC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGCGTCGCAGTAGGGGCTGAGGTGCCCAGCGGAGGG----CCCATTTTTAACCCTTTGCTA----------------------------AACC----TGTCTCATGAGAT--GG----CC--CCGTGCCAGAATCTTTAA-------ACATT-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGCATTCCTCAGGGCATGCCTGTTCGAGCGTCAC-TA--AC--AACCATC----TCACAT-GCAATG-----TGGTCTTGGCTCAT-GTG----T-ATAGCGCCTCC----------------TGTGCTGACTTCACTAA-GCTGAAATGAATA-GGCCAGATA----AGCAAA-CCATGGC--AACTGACTCACA-G-------------------AGTGTTTAA-CAATG------------CTAAACTAGTCGGTA--CCTG----GTATGAA----TCT-----------GTGCCAGT-----GGACCCCC-CCGTTCATTCAAATGAGACA-----------------TGTTGACCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATCAATAAGCGGAGGA???????????????????????????????????????????? [749] Dingleya_JT31575_Australia ???????????????????????????????????????????????????????????????????????????????????????????????????????????CATTA--------------------------------GAAAGCTTATACGT-----------AGAGGC------------------------TGCCGGAGAGGGGGGGCTCGAATCCCCTTCCCCGGTGGGGCTACAATAAACCCAA------------ACCGCGTACCT-GACCA---TGTTGCTTCCC-CGGAC---------------------CCCCCAGGGCGACCTGCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGGACCGGGAGAAGGG----CCGGAATGCATTTCCTGAAAG-------CACCCCAACCAGCATGTGGATGAGA----TGTC---TGACGCT-GG----CCTTTTGCGCCACCGGTTTTGTTTTA---ACATACTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCAGGGCATTCCTTGGGGCATGCCTGCTCGAGCGTCACATA--AA--AACCCCC----TCACAAGCATTTG-----TGGTGCTGGCGGAT-GTG------GCCACCCCCAGTT--------------TTGGGGGCGCCCACACC-GCTGAAATGGATC-AGGCGGACG---CAACCCCCTCTCGCC--AACTGGCTTAGT---------------------AAAATCGAC-GTGAA------------GTCAACCAGCCAGGA-GTAAG----GGAGACG----TCT-----------CGCCCGCAGTGAAGGACCCCG------CATCC----ACGGAGATGAGAAGCCTTG----GGTTGACCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATC????????????????????????????????????????????????????????? [818] Nothojafnia_cf_thaxterii_N10_Argentina ?????????????????????????????????????????????????????????????????????????????????????????????????TGCGGAGGATCATTA----------------GAAAATCGTTTGCAATCCGTAGGCATAACC-----------GGGGAG------------------------AGGAAG-------------GGGGTCAAACCCCCCTTTCCCCG-----ATGCTCTAACAGGAACCCAAACCGCGTACCCCAACCA---TGTTGCTTCCC-CAGAC---------------------CCGCAGGGAG-ACCTGCCTGGCACGTGCCCCTCCT---------------------------------------------------------------------------------------------------------------------------------------------------CACCG------------------------------------------------------------------------------------------------------------ATGGGAACGGCCGGCCGCGGACTGGGAGAAGGG----CCGGAATTTACTTCCAGAAAA-------CACCAATCCAGCCCGAAGA-TGAGA----AGTC---TGACGCGTGC----CT--CCGGGCCACAGGTTTTACATA----ACACAATTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCAGGGCATTCCTTGGGGCATGCCTGCTCGAGCGTCACAGA--AC--AACCCCC----TCACAAGCAATTG-----TGGTGATGGCGGAC-GTG----G-CTTCC-GGCTCCC--------CCATACCGGGAACGGCCCACACC-GCTGAAATCGATC-AGGCGGACGC---AACCTC-CCTCGTC--AACTGGCTTAGT-AAATTCGACG---------------------TCAA------------GTCAACCAGCCAGGA-GTGGG----GTGTTGT----CCG-----------GCCCACACTAC-AGGAGCCAC-------ATCCATC-GCGATGAGA---AACCTCG----GGTTGACCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATCAATAAGCGGGAGGA??????????????????????????????????????????? [866] Labyrinthomyces_JT27750_Australia ???????????????????????????????????????????????????????????????????????????????????????????????????????????CATTA---------------AAGAAAGATTTAACCTGTAGATGCTGCAGGA-----------GAGGGG------------------------GGGTCA-------------GATCCCCCTTTCCCAGCGGGCTACGAA-ACCCAAAC--------------CGCGTACCT-GACCA---TGTTGCTTCCC-CGGAC---------------------CCGCAGGGCG-ACCTGCCCGGTGCTGGGCCCCCCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGCAGGGGGACGCGCCGGCCATGGGCCGGGAGAAGGG----CCGGAATGTACTTTCCTGAAAAGAAGAACCCCCCAACCAGCCCGAAGATGTGG----AGTC---TGACGCC-GG----CC-TTCGTGCCGTCGGTTTAGTTTTTA--ACACACTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCAGGGCATTCCTTGGGGCATGCCTGCTCGAGCGTCACATA--AA--AGCCCCC----TCACAAGCATTTG-----TGGTGCTGGCGATT-GTG----G--CCGTCCCCCCTCGC------------CGGGGGGGGCCCACTCC-GCTGAAATGGATC-AGGCGGACG----CAACCCTTCTCGCC--CACTGGCTTAGTAAA------------------ACCGACGTC----AA------------GTCGACCAGCCAGGA-GTTTG----GTGGCGT-----CT-----------TGCCCGCAACGAAGGACCCCC------CCTCCTCC-ATGGAGTTGAGAAACCTTG----GGTTGACCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATC????????????????????????????????????????????????????????? [866] Reddellomyces_JT27723_Australia ???????????????????????????????????????????????????????????????????????????????????????????????????????????CATTA---------------AGAGAAAATGTAACCGGTAGATGCTGCAGGA-----------GAGGGG------------------------GGCTCA-------------AATCCCCCTTTCCCAGCGCGCCACAAA-ACCCAAAC--------------CGCGTACCC-AACCA---TGTTGCTTCCC-CGGAC---------------------CCGCAGGGTG-ACCTGCCCGGCGCTGGGCCCCCCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGCAGGGGGACGCGTCGGCCGTGGGCCGGGAGAAGGG----TCGGAATGTACTTTCCTGAAG---AAACCCCCCCAACCTGCCCGAAGATGTGG----AGTC---TGACGTC-GG----CC-TCGGTGCCGTCGGTTTTGTTTTTA--ACACACTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCAGGGCATTCCTTGGGGCATGCCTGCTCGAGCGTCACATA--AA--AGCCCCC----TCACAAGCATTTG-----TGGTGCTGGCGATT-GTG----G--CTGTCCCCCTTCG-------------CTGGGCGGGCCCACACC-GCTGAAATGGATC-AGGCGGACG----CAACCCTTCTCGCC--CACTGGCTTAGTAAA------------------ACCGACTTC----AA------------GTCGACCAGCCTGGA-GTTTG----GTGGCGT-----CT-----------TGCCGGCAACGAAGGACCCCC------CCTCCTTAGACGGAGTTGAGAAACCTTG----GGTTGACCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATC????????????????????????????????????????????????????????? [863] Leppia_JT28813_Australia ???????????????????????????????????????????????????????????????????????????????????????????????????????????CATTA----------------------------TCCGTAGATGCTGCCGGA-----------GAGGGG------------------------GGTCGA-------------ATCCCCT--TTCCCAGTGCGCTACAAGAAACCCAAA------------ACCGTGTACCT-GACCA---TGTTGCTTCCC-CGGAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCCAGGGCGACCTGCGGTGGACCGGGAGAAGGG----CCGGAATGCATTTCCTGGAAA-------CCCCCCAACCAGCCTGTGGATGAGA----CGTC---TGACGCT-GG----CC-TTCGCGCCACCGGTTTTGTTTTA---ACATACTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCAGGGCATTCCTTGGGGCATGCCTGCTCGAGCGTCACGTA--AA--AACCCCC----TCACAAGCATTTG-----TGGTGCTGGCGGAT-GTG----G--CCACCCCCAGTT--------------TTGGGGGTACCCACACC-GCTGAAATGGATC-AGGCGGACG---CAGCCCCCTCTCGCC--AACTGGCTTAGTAAA------------------ATCGACGTG----AA------------GTCAACCAGCCAGGA-GGGAG----GGAGACG----TCT-----------TGCCCACAGTAAAGGACCCCG------CATCCACGGAGGTGAGA----AGCCTTG----GGTTGACCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATCAATAAGCGGAGGAAAAGAAACCAACAGG????????????????????????????? [805] Leppia_holotype_Australia ????????????????????????????????????????????????????????????????????????????????????????????????????????????ATTA-----------------------------------------TACGT-----------AGAGGC------------------------TGCCGGAGAGGGGGGGCTCGAATCCCCTTCCCCGGTGGGGCTACAATAAACCCAA------------ACCGCGTACCT-GACCA---TGTTGCTTCCC-CGGAC---------------------CCCCCAGGGCGACCTGCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGGACCGGGAGAAGGG----CCGGAATGCATTTCCTGAAAA-------CACCCCAACCAGCATGTGGATGAGA----TGTC---TGACGCT-GG----CCTTTTGCGCCACCGGTTTTGTTTTA---ACATACTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCAGGGCATTCCTTGGGGCATGCCTGCTCGAGCGTCACATA--AA--AACCCCC----TCACAAGCATTTG-----TGGTGCTGGCGGAT-GTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCA?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? [735] Reddellomyces_JT27724_Australia ???????????????????????????????????????????????????????????????????????????????????????????????????????????CATTA----------------------------AGAAAGTAATCCGTAGGCATCGCCTGGAGAGGGGA------------------------GGTCAT-------------AAATCCCCTTTCCCGGTGCTCTACCAA-ACCCAAAC--------------CGTGTACCA-AACCA---TGTTGCTTCCC-CAGCC---------------------CCGCAGGGAG-ACCTGCCCGGCATTGGCCCCCCGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTGGCCGAGGGCCTGCCCGCTGTGGGCTGGGAGAAGGG----CCTGAACGAGTATGTTCTGAA-ACCCGTCACCCCAAACACCCTGAAGAGGAGA----AGTC---TGACCAT-GG-----CGTTTGCGCCAACCGTTTTGTTACA---ACATACTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCAGGGCATTCCTTGGGGCATGCCTGCTCGAGCGTCACATAGTAA--AACCCCC----TCACAAGAGTTTG-----TGGTGGTGACGGAT-GTG----GCTTCGCCCCCTGACT-------------TTGGGGGGCCCCACACC-GTTGAAATGGATC-CGGCGGACG---CAACCCCCCCTCGACCAAACTGGCTTAGT---------------------AATGCTCGACGTCAA------------GTCGACCAGCCAGGA-GCGGT----GTCGACG----TCC-----------TGCCCGCAACAATGGACCCCC----CCCATCCATG---GCGATGAGGAAACCTAG----GGTTGACCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATC????????????????????????????????????????????????????????? [872] Reddellomyces_JT4985_Australia ???????????????????????????????????????????????????????????????????????????????????????????????????????????CATTA--------------AAGAAGAGATTTAACCTGTAGATGCTGCAGGA-----------GAGGGG------------------------GGGTCA-------------GATCCCCTTTTCCCAGCGGGCTACGAA-ACCAAAAC--------------CGCGTACCT-GACCA---TGTTGCTTCCC-CGGAC---------------------CCGCAGGGCG-ACCTGCCCGGTGCTGGGCCCCCCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGCAGGGGGACGCGCCGGCCATGGGCCGGGAGAAGGG----CCGGAATGTACTTTCCTGAAAAGAAGAACCCCCCAACCAGCCCGAAGATGTGG----AGTC---TGACGCC-GG----CC-TTCGTGCCGTCGGTTTAGTTTTTA--ACACACTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCAGGGCATTCCTTGGGGCATGCCTGCTCGAGCGTCACATA--AA--AGCCCCC----TCACAAGCATTTG-----TGGTGCTGGCGATT-GTG----G--CCGTCCCCCCTCGC------------TGGGGGGGGCCCACTCC-GCTGAAATGGATC-AGGCGGACG----CAACCCTTCTCGCC--CACTGGCTTAGTAAA------------------ACCGACGTC----AA------------GTCGACCAGCCAGGA-GTTTG----GTGGCGT-----CT-----------TGCCCGCAACGAAGGACCCCC------CCTCCTCC-ATGGAGTCGAGAAACCTTG----GGTTGACCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATC????????????????????????????????????????????????????????? [867] Reddellomyces_JT6873_Australia ???????????????????????????????????????????????????????????????????????????????????????????????????????????CATTA-----------------AGAAAGTAATCCGTAGATATCGCCTGGAG-----------AGGGGA------------------------CGTCAA-------------AATCCCCTTTCCCCGGTGCTCTACCAA-ACCCAAAC--------------TGTGTACCA-AACCA---TGTTGCTTCCC-CAGCC---------------------CCGCGGGGTG-ACCTGCCCGGCATTGGTCCCCCCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTTTGACCGAGAGGGCCTGCCGGCTGTGGGCTGGGAGAAGGG----CCTGAACGAGTGTGTTCTAAA-AACCCTCCCCCAAAACAGCCTGAAGAGGAGA----AGTC---TGACCAT-GG----CC-TTTGCGCCAACCGTTTTGTTACA---ACATACTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCAGGGCATTCCTTGGGGCATGCCTGCTCGAGCGTCACATAGAAA--AACCCCC----TCACGAGCATTTG-----TGGTGCTGACGGAT-GTG----G-CTCGCCCCCCCGACC------------TGGGGGAGCCCCACACC-GTTGAAATGGATC-CGGCGGACG----CAACCCTCCTCGCCCAAACTGGCTTAGT---------------------AATGCTCGATACCTA------------GTCGACCAGCCAGGA-GTAGG----GTTGACG----TCT-----------CGCCCGCAACAATGGACCCCCTCCGTCCGTCAGGATGAGG--------AACCTAG----GGTTGACCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATC????????????????????????????????????????????????????????? [873] P5M4_5a_EcM_Nothofagus_obliqua_Argentina ???????????????????????????????????????????????????????????????????????????????????????????????????GGAAGGATCATTA---------------ACCAGTCCGGATAACGGAAAAAGGCACGCGG-----------GGGGAG------------------------ATCCGTCGCCAGCGGCTGCGACTCCCGCTGTCCTGTCCCGCCC----ACCCTCTC--------------CGTGTACCT-CTCCA---TGTTGCTTTCC-TGGGA---------------------CGGTTGGCCCAGCCTGCCCGGTGGTGGGCTCCTCG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCCCCGTCTGTTGGGGCGCTGAGGTGCCCGCGGCCGAGTTTCCCGGGGAAGGT----ACCCTTCATAAATCCCCTGCA------------------------------GCAACCTGTC---TGACACA-GG----CC--CATGGCCATTGCTACAT--------AATTACATAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGCATTCCTCAGGGCATGCCTGTTCGAGCGTCAC-AG--AA--AGCCCCCCCTCACACAC-AAGCTG-----TGGTGATGTCGTTG-GTG----AGCC-------------------------TCAACCGGCTCCACCAC-GTCCAAATCCAT--GGGCGGACA----ACTGAT--CTCAGC--AGCTGACTTAGTAAGATAGAGTTCATCTGCAGTACTTGCTGTCAGAAG------------GAACATCAGTCAGGA-GCTAG----GTTACGT---CCCG-----------TCCCCGCCTCATTGGAACCCC----CCCATGAAATT------------ATCTTTG----GGTTGACCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATCAATAAGCGGAGG????????????????????????????????????????????? [864] L_C04_EcM_Salix_humboldtiana_Argentina ???????????????????????????????????????????????????????????????????????????????????????????????????GGAAGGATCATTA---------------------------------------CAAATGA-----------CTGGGA------------------------TGTCCT-------------ATCGG----ACCCCCAAGCAAA------CACATCTA--------------TGTGTACTC-TGCCA---TGTTGCTTCCC-CAGAC---------------------CAGTGGCCAC-TGCTGCCAGCCCAGCCCCTAATGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTCCTGGGTTGAGGTGTCTGGGGAAGGG----CTCAATATCAAACTTTTCAAC------------------------CCACTAGT----CGTC---TGAGAA--GG----CC--ATGTGCCGCAATATTTA--------AACAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCAC-TA--AA--AACCGAC----TCACAT-ATCGTG-----TGGTATTGGTAGAA-GTG----G-ATAGTACTAACA---------------CTACTTTGTCTTACTCT-GCTGAAATGAATA-GGCCAGAAA----AGTGGA-CCATGGT--AATAGATTCCAG-G-------------------AGTGTTTTA-AAATG------------CTATACTAGTCTTAT--CCAA----GTCATAT----TCT-----------GAGCCACT-----GGACCCCCC------ATTTAGTC-CA---------AACAACAGT--GGTTGACCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATCAATAAGCGGAGGA???????????????????????????????????????????? [776] Choiromyces_meandriformis_DL_Oregon ???????????????????????????????????????????????????????????????TAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTA------------------------------------CACCATCTCC-----------GGCGGG------------------------CGTCCC-------------CGCGAGGGGTCGCCCAACGGTATCAAGAAACCCCCC---------------GTGTACCT-CTCCA---TGTTGCTTCCC-CAGGC---------------------CGGCAGCCGTCGCCTGCCCGGCCCACGCCCCATCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGGCGTGTGGCCGGAGGTGCCCGGGGGAGGA----CC----------AACCCCAAC---------CTCCAACCATCCAGTGGAAGAGA----AGTC---TGACCG--GG----CC--ACGTGCCATCTGTATTA--------ACAAACTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCAC-TA--AC--AAACCCC----TCACTTCTGTATAG----TGGTGTTGGCGGAA-GTG----G-------TGCCCGCGCTGGGGTTCGTCTCCCCCGCCGCCCACTCC-GCCGAAATGCATC-GGGCGGACA----AACTGA-TCTCAGC--AACTGACTTAGT---------------------------------AAA------------ATCAATCAGCCAGGA-GTTAG----GTTACGTTACGCCT-----------TGCCGGCCAGCTTGGACCCCC-------ATCCAACTTGGTACA-----AATCATG----GGCTGACCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATC????????????????????????????????????????????????????????? [808] Choiromyces_alveolatus_97 ????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????GC-----------?GGCGG------------------------TCCCG?-------------AGACGGGACGCCTGACCGTGTTATCAGAAACCCCAC--------------CGCGTACCG-CTCCA---TGTTGCTTCCC-CAGGT---------------------CAGCAGCCCT---TTGCCTGCCCG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCACGCCGGAGGCGCCTGGGGGAGGG----CC----------CACTCCAAT-------------CTCGCTTTGTCCAGCGGAAGAGAAGTC---TGACTT--GG----CC-ACAGTGCCATCAGTATTA--------ACGTACTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCAC-TA--AC--AACCTCG----TCACTT-CCACTG-----TGGTGTTGGCGGCA-GTG----G------TCACCAGCACGGAGGATCTTCTCCCCGTCTGCCCACTCC-GCCGAAATAAATC-AGGCGGACA----AACTGA-TCTCAGC--GACTGACTTAGT---------------------------------AAA------------ATCAATCAGCCAGGA-GTGAG----GTTACGT----CCA-----------GCCCAGCTTC---GGACCCCC-------ATCCGTTGCCACGCA-----GACCATG----GGTTGGCCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATC????????????????????????????????????????????????????????? [818] Choiromyces_alveolatus_HS2886 ???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????GCGG------------------------TCCCGT-------------AGACGGGACGCCTGACCGTGTTATCAGAAACCCCAC--------------CGCGTACCG-CTCCA---TGTTGCTTCCC-CAGGT---------------------CAGCAGCCCT---TTGCCTGCCCGGCACGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGAGGCGCCTGGGGGAGGG----CC----------CACTCCAAT-------------CTCGCTTTGTCCAGCGGAAGAGAAGTC---TGACTT--GG----CC-ACAGTGCCATCAGTATTA--------ACGTACTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCAC-TA--AC--AACCTCG----TCACTT-CCACTG-----TGGTGTTGGCGGCA-GTG----G------TCACCAGCACGGAGGATCTTCTCCCCGTCTGCCCACTCC-GCCGAAATAAATC-AGGCGGACA----AACTGA-TCTCAGC--GACTGACTTAGT---------------------------------AAA------------ATCAATCAGCCAGGA-GTGAG----GTTACGT----CCA-----------GCCCAGCTTC---GGACCCCC-------ATCCGTT-GCCACGCA----GACCATG----GGTTGGCCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATC????????????????????????????????????????????????????????? [829] Choiromyces_meandriformis_RH691_Iowa ???????????????????????????????????????????????????????????????????????????????????????????????????????????CATTA------------------------------------CACGATCTCC-----------GGTGGG------------------------CGTCCC-------------CGGAAGGGGTCGTCCAACGGTATCAAGCAATCCCC---------------TGCGTACCT-CTCCA---TGTTGCTTCCC-CAGGT---------------------CGGCAGCCGTCGCCTGCCCAGCCCATGCCCCATCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGGTGTGTGGCCGGAGGTGCCCGGGGGAGGA----CC----------AACCCCAAC---------CTCCAACCATCCAGTGGAAGAGA----AGTC---TGACCG--GG----CC--ATGTGCCATCTGTATTA--------ACAAACTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCTTAGGGCATGCCTGTTCGAGCGTCAC-TA--AC--AAACCCC----TCACTTCTGTATAG----TGGTGTTGGCGGAA-GTG----G-------TGCCCGCGCTGGGGATCGTGTCCCCGGTGGCCCACTCC-ACCGAAATGCATT-GGGCAGACA----AACTGA-TCTCAGC--AACTGACTTAGC---------------------------------AAA------------ATCAATCAGTCAGGA-GTTAG----GTTATGT-----CT-----------TGCCAGCCGGCTTGGACCCCC-------ATCCAACTTGGTACA-----AATCATG----GGTTGACCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATC????????????????????????????????????????????????????????? [803] Tuber_aestivum_JT30500_Sweden ??????????????????????????????????????????????????????????????????????????????GGTTTCCGTAGGTGAACCTGCGGAAGGATCATTA--------------------------------------AACAAGCC-----------GGGTGA------------------------CGCCCG-------------TGGGGCGGCCACCCAGAGCACCA-----AACCACAG-------------CTGCGTACAA-TGCCA---TGTTGCTTCCC-CGGGC---------------------CAGCGGCCGT-CGCCGCCCGTCGGCGAGACACAGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTGGATCGCCGCGCGGAGGCGCCCGGGGGTGGG----GC----TCCCGCCCCTCGAAA-----------CTAAGACGTCGGGAG-CGTGGACTGTGTC---TGACCTGGGC----CACATTGGGCCGCCGAAAACTTG------ACAAG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAGGTAATGTGAATTGCAGAACTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTGGGGCATTCCTCAGGGCATGCCTGTCCGAGCGTCAG-TG--CA--AACCACC----TCACGG-AACACG-----TGGTGCTGGCGGAG-GTG----GTGTCGGATCGGGCCGCGATGGCGGC---CCGGTCCTCCCCACCCC-GCCGAAATGTATG-GGGAGCAAC----ACGCATTGGC-GG---ACCCGACTTGGT-A-------------------GACGCTGTGGTTAGC------------GTGGAGCAGTCGCGGGGCCA?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? [863] Tuber_mesentericum_CW105_Sweden ???????????????????????????????????????????????????????????????????????????????????????????????????????????CATTA---------------------------------------CAACAGC-----------CGGGGA------------------------CGCCCC-------------ATGGGCGGCACCCCTGAGCACCAA----ACCACAGC--------------TGCGTACCA-TGCCG---AGTTGCTTCCC-CGGGC---------------------CGGCGGCCGT-CGCCGCCCGCCGTGCGAGTCGCCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTGGCTCGCCCGGCGGAGGCGCCCGGGGGTGGT----TGGGGTCCAGCCCCGACGTGA-----------AAAACGCTTTGGACGGATAACGAGAAGTC---TGAACCCGGCGCC-CTCTTGGGGCCGCCAACCT---------GAAAAG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAGGTAATGTGAATTGCAGAACTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTGGGGCATTCCTCAGGGCATGCCTGTCCGAGCGTCAG-TG--CA--AACCCCC----TCACGGAAACCCG-----TGGTCCTGGTGGAG-GTGGAGAGAGTCGGGCTCCCC---------------AGCCCGGCCGCCACCCC-GCCCAAATGAAAG-GGGAGGAAC--------GCGTGTCCGCGGACCCGACTTGGT-A-------------------GACGTTGTGATAAGC------------GTAGAGCAGTCGTGC-GCCGT----CCACGGT----CCC-----------TCCCGCCT----CGAGCCCCC-------AC-----------------------------AGTGGGCCGCCGA--------GGGTCTTCTCAGG??????????????????????????????????????????????????????????????????????? [793] Tuber_aestivum_AF516786_Europe ??????????????????????????????????????????????????????????????????????????????????TCCGTAGGTGAACCTGCGGAAGGATCATTA--------------------------------------GACAAGCC-----------GGGTGA------------------------CGCCAG-------------TGGGGCGGCCACCCAGAGCACCA-----AACCACAG-------------CTGCGTACAA-TGCCA---TGTTGCTTCCC-CGGGC---------------------CAGCGGCCGT-CGCCGCCCGTCGGCGAGACACAGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTGGATCGCCGCGCGGAGGCGCCCGGGGGTGGG----GC-----TCCCGCCCCTCAAA--------ACTAAAACGTCGGGAGCATTGGAC----TGTC---TGACCTGGGC----CACATTGGGCCGCCGAAAACTTG------ACAAG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAGGTAATGTGAATTGCAGAACTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTGGGGCATTCCTCAGGGCATGCCTGTCCGAGCGTCAG-TG--CA--AACCACC----TCACGGAAACACG-----TGGTGCTGGCGGAG-GTG----T-GGTGTCTGATCGGGCCGCGATGGCGGCCCGGTCCTCCCCACCCC-GCCGAAATGTATG-GGGAGCAAC----ACGCATTGGC-GG---ACCCGACTTGGT-A-------------------GACGCTGTGGTTAGC------------GTGGAGCAGTCGCGG-GGCCA----TTGCTGT----CCC-----------TCCCGCCTC----GAGCCCGTGGCGG-CATCTCCG-GGG---------CATCTCGTCAGGTTTGACCTCGGATCAGGTAGGGGTACCCGCTGA-ACTTAAGCATATCAATAAGCGGAGGA???????????????????????????????????????????? [829] Tuber_aestivum_China_GQ217542 ????????????????????????????????????????????????????????GAAGTAAAAAGTCGTAACAAGGTTT--CCGTAGGTGAACCTGCGGAAGGATCATTA--------------------------------------AACAAGCC-----------GGGTGA------------------------CGCCCG-------------TGGGGCGGCCACCCAGAGCACCA-----AGCCACAT-------------CTGTGTACGA-TGCCG---TGTTGCTTCCC-CGGGC---------------------CAGCGGCCGT-TGCCGCCCACCGGCGAGACACTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTGGATCGCCAGGTGGAGGCGCCCGGGGGTGGG----GC----TCCCGCCCCTTGAAA-----------CCAAACCACCGGAGCATGGAC----TGTC---TGATCTG-GG----CCACACTGGACCCCCAAAGCTTG------ACAAG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAGGTAATGTGAATTGCAGAACTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTGGGGCATTCCTCAGGGCATGCCTGTCCGAGCGTCAG-TG--CA--AACCACC----TCACGG-AAGTCG-----TGGTGCTGGCGGAG-GTG----GTGTCGG-GTCGAGCTGCGATGGCGGCCCGGTCCCCCACCCACCCC-GCCGAAATGTATG-GGGAGGAAC----GCGCATTGGC-GG---ACCCGACTTGGT-A-------------------GATGTCGCGATTATC------------GCGAAGCAGTCGTGGGGCCAT----T----------GCT----------GTCCCTCCCGCCTCGAGCCCGTGACGG-CATCCCGG-GGG---------CATCTTGTCAGGTTTGACCTCGGATCAGGTAGGGGTACCCGCTGA-ACTTAAGCATATCAATAAG??????????????????????????????????????????????????? [823] Tuber_gennadii_BM667_Spain ???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????GGGT------------------------GGTC?TGACTCCGTGGTGGGTCGGAGCCGCCCCCTTCATCAA-----ACACTTCC--------------CGCGTACCT-CTCCA---TGTTGCTTCCC-CGGGC---------------------CAGCGGCCTTCTGCCGCCCGTCCCGACGCCTGGCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCCGGTGACGGAGGCGCCCGGGGGAGGC----CCACCGACAAAACGCTACAGA----------------------GCCGACAAGT--GGAGTC---TGACAG--GG----CC--TGGTGCCCG-ATGGTGCAA------ACAAG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCAACGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGCACTCCTCAGGGCATGCCTGTCCGAGCGTCAC-AG--AAATACCCCAC----TCACCAGCCTTTG----GTGGTCTTGGCCCAG-GTG----GATTCAGGGGGCCGCCAAGT---------GCGGTCCAGTCCACCGC-GCCGAAATGCATATGGCCGGGCA----GCCGGT--GCCGGT--GACTGACTTAGT---------------------AATGGGTGCCGCAGG------------GCAAACCAGTCAGGA-GCCGT----CTCGAGC----CCC-----------GAGCCCAGG----GAAGGCCC------CACGTGGCCCCCCGAAAGAGAGATCATG----GGTTGACCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATC????????????????????????????????????????????????????????? [870] Tuber_gennadii_JT9627_Spain_paratype ???????????????????????????????????????????????????????????????????????????????????????????????????????????CATTA-----------------------------GTATTATATCTGTGTGC-----------CGGGGT------------------------GGTCATGACTCCGTGGTGGGTCGGAGCCGCCCCCTTCATCAA-----ACACTTCC--------------CGCGTACCT-CTCCA---TGTTGCTTCCC-CGGGC---------------------CAGCGGCCTTCTGCCGCCCGTCCCGACGCCTGGCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCCGGTGACGGAGGCGCCCGGGGGAGGC----CCACCGACAAAACGCTACAGA----------------------GCCGACAAGT--GGAGTC---TGACAG--GG----CC--TGGTGCCCG-ATGGTGCAA------ACAAG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCAACGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGCACTCCTCAGGGCATGCCTGTCCGAGCGTCAC-AG--AAATACCCCAC----TCACCAGCCTTTG----GTGGTCTTGGCCCAG-GTG----GATTCAGGGGGCCGCCAAGT---------GCGGTCCAGTCCACCGC-GCCGAAATGCATATGGCCGGGCA----GCCGGT--GCCGGT--GACTGACTTAGT---------------------AATGGGTGCCGCAGG------------GCAAACCAGTCAGGA-GCCGT----CTCGAGC----CCC-----------GAGCCCAGG----GAAGGCCC------CACGTGGCCCCCCGAAAGAGAGATCATG----GGTTGACCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATC????????????????????????????????????????????????????????? [830] Tuber_gennadii_M1904_Italy ???????????????????????????????????????????????????????????????????????????????????????????????????????????CATTA------------------------------ATATTATTCTGTGTGA-----------GGGGGG------------------------AGGCCATGACTCCGCGGCGGGTCGGTGCTTCCTCAATCTTCA-----ATCACCCC--------------TGTGTACCT-CTCCA---TGTTGCTTCCC-CGGTC---------------------CAGCGGCCAT-TGCCGCCCGCACCCGG?CCGCTTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGTCCGGGGTCGGAGGTGGCCGGGGGAGGG----CCAACCACGAAACTCTGCAAA---------------------GCCGACCGTGC----AGTC---TGACCG--GG----CC--TCGCGCCCG-AAGCTACAA------ACAAG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCAACGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGCACTCCTCAGGGCATGCCTGTCCGAGCGTCACAGA--AA--GACCCCC----TCAGCAGCCTTTGGTTGGTGGTGTTGGCCGGC-GTG----GAGTGGGACGGCCGTCGTAGGCGTGCG--CGTCCCCACTTCACCCA-GCCGAAATGCATATGGCCGGGCA----GCCGGT--GGCGGT--GACTGACTTAGTAACA-----------------ACTGCCGCA----GG------------GCATACCAGTCAGCA-GCCGT----CCCGAGC----CCC-----------GAGCCCTG-----GGAGCACC------CCCGTGTGCCTCCCGCAAACACTTACGG????????????????????????????????????????????????????????????????????????????????????????????????????????????? [843] Tuber_anniae_JT13209_Washington_holotype ?????????????????????????????????????????????????????????????????AGTCGTAACAAGGTTT--CCGTAGGTGAACCTGCGGAAGGATCATTA---------------------------------------CAAATGT-----------CTGGGA------------------------TGTCCA-------------ATCGG----GCCCCCAAGCAAA------CACATCCA--------------TGTGTACAC-TCCCA---TGTTGCTTTCC-CAGAT---------------------CAGTGGCCAC-TGCTGCCAGCCCAACCCCTTGATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGGTCCTGGGTTGAGGTGTCTGGGGAAGGG----CCCAATAACAAACCTTTGAAC------------------------CAATTAGT----TGTC---TGAGTA--GG----CC--ACCTGCCGC-AATCTTTAA-----AACATG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCAC-TA--AA--AACCCCC----TCACAG-ATAATG-----TGGTATTGGTAGAA-GTG----A-ACGGTACTTACA---------------TTACCTTGTCTCACTCT-GCTGAAATGAATT-GGCCAGAGA----AGTGGACCCATGGT--AATTGACTCCAG-G-------------------AGTGTTTTT-CAATG------------CTAAACTAGTCTTTA-CCCAA----GTCAAGT----TCT-----------GAGCTACC-----GGACCCCC------CATTAAGTCCAA---------AACAGAGT---GGTTGACCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATC????????????????????????????????????????????????????????? [779] Tuber_borchii_GB14_Italy ???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????CATTACAAAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTA-TGGGATGCCCTATC---GGACTCCCAA-GCAAAACACATTCCTGTGTACTCTCCCTCATTAAACTTTTGAAC-CAATTAGT----AGTC---TGAGAA--GG----CC--ATGTGCTGT-AAAATTTAA------ACATG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCAC-TA--AA--AACCCCC----TCACAG-ATAATG-----TGGTATTGGTAGAA-GTGG---A--TGGTACTAACAC---------------TACTTTGTCTGACTCT-ACTGAAATGAATA-GGCCAGAGA----AGTTGACCG-TGGT--AATAGACTCCAG-G-------------------AGTGTTTTA-AAATG------------CTAAATTAGTCTTCT--CCAA----GTCATGT----TCT-----------GAGCTACC-----GGACCCCC------CATTTAGTCCAA---------ACTAGAGA---GGTTGACCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATC????????????????????????????????????????????????????????? [942] Tuber_borchii_GB1_Italy ???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????CATTAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAATGTATGGGATGCCCTATC---GGACTCCCAA-GCAAAACACATTCCTGTGTACTCTCCCTCATTAAACTTTTGAAC-CAATTAGT----AGTC---TGAGAA--GG----CC--ATGTGCCGT-AAAATTTAA------ACATG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCAC-TA--AA--AACCCCC----TCACAG-ATAATG-----TGGTATTGGTAGAA-GTGG---A--TGGTACTAACAC---------------TACTTTGTCTGACTCT-ACTGAAATGAATA-GGCCAGAGA----AGTTGACCG-TGGT--AATAGACTCCAG-G-------------------AGTGTTTTA-AAATG------------CTAAATTAGTCTTCT--CCAA----GTCATGT----TCT-----------GAGCTACC-----GGACCCCC------CATTTAGTCCAA---------ACTAGAGA---GGTTGACCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATC????????????????????????????????????????????????????????? [941] Tuber_anniae_JT22695_Oregon ???????????????????????????????????????????????????????????????????????????????????????????????????GGAAGGATCATTA---------------------------------------CAAATGT-----------CTGGGA------------------------TGTCCA-------------ATCGG----GCCCCCAAGCAAA------CACATCCA--------------TGTGTACAC-TCCCA---TGTTGCTTTCC-CAGAT---------------------CAGTGGCCAC-TGCTGCCAGCCCAACCCCTTGATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGGTCCTGGGTTGAGGTGTCTGGGGAAGGG----CCCAATAACAAACCATTGAAC------------------------CAATTAGT----TGTC---TGAGTA--GG----CC--ACCTGCCGC-AATCTTTAA-----AACATG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCAC-TA--AA--AACCCCC----TCACAG-ATAATG-----TGGTATTGGTAGAA-GTG----A-ACGGTACTTACA---------------TTACCTTGTCTCACTCT-GCTGAAATGAATT-GGCCAGAGA----AGTGGACCCATGGT--AATTGACTCCAG-G-------------------AGTGTTTTT-CAATG------------CTAAACTAGTCTTTA-CCCAA----GTCAAGT----TCT-----------GAGCTACC-----GGACCCCC------CATTAAGTC------------CAAAACAGAGTGGTTGACCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATC????????????????????????????????????????????????????????? [781] Tuber_asa_M1828_Italy ??????????????????????????????????????????????????????????GAAGTAAAA?GTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTA---------------------------------------CAAATAT-----------CTGGGA------------------------TGTTCA-------------ACTGG----ACTCCCAAGTAAA------CACATTCA--------------TGTGTACCC-TTCCA---TGTTGCTTCCC-CAGAC---------------------CAGTGGCCAT-TGCCACCAGTCAAGTCCCTAATTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGCTCCTGGGCTGAGGTGTCTGGGGAAGGA----CCCATTATCAAACCTTTAAAC------------------------AAATTAGT----TGTC---TGAGAC--GG----CC--ATGTGCCGC-AATCTTTAA-----AATATA-TTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTAGGTATTCCTGAGGGCATGCCTGTTCGAGCGTCAC-TA--AA--AACCATC----TCACAG-ATAATG-----TGGTATTGGTAGAA-GTG----G-GTAGTACTGGATT--------------GTACTTTATCCTACTCC-ACCGAAATCAATA-GGTCAGAAA----TGTGGA-CCATGGT--AACAGACTCTCA-G-------------------AGTGTTATAAAAATA------------CTATACTAGTCTTAA--CCTG----GTTGGAA----TCT-----------GAGTCACT-----GGACCCCC-------CTTGAGTCC-----------AAACAAAGAGAGGTTGACCTCG?????????????????????????????????????????????????????????????????????????????????????????????? [782] Tuber_sp_JT28121_Japan ???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????CTTCTTGGACACCACATTGTGGGTCCT--------------TGTGTCAATGTACCT---TTTTTCTTTTT-TATAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTGTAAA------------------------------ACTAGCAGTC---TGACTA--GG----CC--ATGTGCCTT-TTTAATGAA------ATAAG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATTGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCAC-TA--CA--AACCCTC----TCACATTGTAATAATGTGTGGTATTGGCAGAA-GTC----GTAGGGACCT-------------------TTCCCAGAATCCACTCT-GCTGAAATATATC-GTGCAGATA----TCCCAT--ACTGGT--AAATGACTTTTTTATGCTAAAGCGTTC------AACGCTCTCCAGCAC------------TTGAGTCAGTTGGCCAT--------TGGTAGA----ACC-----------GCACGTTATCA--GGACCCCC-------ATCCTTT-GTATAT------ATCTTTG----GGTTGACCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATCAATAAGCGGAGGAAAAGAAACCAACAGGGATTGCCTCAGTAACGGCGAGTGAAGCGG [815] Tuber_sp8_K228_Japan ??????????????????????????????????????????????????????????????????????????????????????????????????????????acattg----------------------------------------------------------tgggt------------------------------------------------------ccttgtgtc------------------------------aatgtacct---------tttttcttttt-tatac-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------tcttgtaaa--------------------------actagc----agtc---tgacta--gg----cc--atgtgcctt-tttaatgaa------ataag-ttaaaactttcaacaacggatctcttggctctcgcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcattgaatctttgaacgcacattgcgccctttggtattccttagggcatgcctgttcgagcgtcac-ta--ca--aaccctc----tcacattgtaataatgtgtggtattggcagaa-gtc------gtagggacct-----------------ttcccagaatccactct-gctgaaatatatc-gtgcagata------tcccatactggt--aaatgacttttttatgctaaagcgttc------aacgctctccagcac------------ttgagtcagttggcc-attggtagaaccgcacgttatca------------------------ggaccccc-------atccttt-------gtatatatctttg----ggttgacctcggatcaggtagggatacccgctga-acttaagcatatcaataagcggag?????????????????????????????????????????????? [681] Tuber_sp9_K214_Japan ????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????tt-----------ctggga------------------------taccac---------------tctgtgggtccttgtgccaa------accctaaa--------------catgtacaa-ac------tattagaaaca-ctagc--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------agtc---tgactt--gg----ta--atatgccat-tttaataga------ataag-ttaaaactttcaacaacggatctcttggctctcgcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattccgtgaatcattgaatctttgaacgcacattgcgccctttggtattccttagggcatgcctgttcgagcgtcac-ta--ta--taccctc----tcacat-ataatg-----tggtattggccaaa-gtg------gtgggaaata-----------------ctcccataagtcactat-gccaaaatttatt-gcacggaca----actaat--accgcc--aactgactttgt-a-------------------agcattattgagcat------------gtaaaccagtcagga-gtcggtgaagttgggcaaacctt------------------------ggaccccc-------atccagt-------------ataattttcttggttgacctcggatcaggtagggatacccgctga-acttaagcatatcaataa???????????????????????????????????????????????????? [718] Tuber_beyeleri_JT32597_Oregon ???????????????????????????????????????????????????????????????????????????????????????????????????????????CATTA-------------------------------------------------------------------------------------------------------------------------------------------------------------TTATA----ATGCG---TGGAAATGCCC-CTAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGGG----CT----------CTCTATAAA-----------------------ACTCTAAACTTACTGTC---TGAGAA--GG----CC--ATGTGCCGT-AATCTTTAA------ACATT-TTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCATAGGGCATGCCTGTTCGAGCGTCAC-TA--AA--AACCTCA----TCACAA-AGAGTG-----TGGTATTGGCAGAA-GTG----G-GTAGGGCCAGCAAGGA-----------AGTGCTGGCCCCACTCT-GCTGGAATGAATA-GGCCGGAAA----TGTAGA-CCATGGT--AACAGACTTTCA-G-------------------AGTATCGTC-AAATG------------CTAAATTAGTTTGTATGCTTG----GTCAGAA----TCT-----------AGGCCATT-----GGACCCCC-------ATTCTGT-ATAAAGCAGCAA-----------TGTTGACCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATC????????????????????????????????????????????????????????? [669] Tuber_canaliculatum_JT28215_New_Jersey ???????????????????????????????????????????????????????????????????????????????????????????????????????????CATTA-------------------------------------GAGAGATAT-----------CAGGGA------------------------GGCCCA-------------TCCGG----TTCCCCG----------------------------------AGCAAACAA-TCCCAACGCGTTGCCAATG-AATGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTC---TGAGCA--GG----CC--ACCAGCCTG-AAACAACCA------ACATG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGCACTCCTCAGGGCATGCCTGTTCGAGCGTCAA-TA--GA--AACCCCCC---TCACC--CTCCTG-----GGG????GGGGGAG-GTG----G-GT?G???TCCC----------------GGCGCCTGGCCCACCCC-CCCGAAACGCATG-GGCCCGAGAGACGACTGGC-----TGC--GACTGACATTCT-A-------------------AGCGCTTTG-CAGGC------------CTGAACCGGTCCGCA-GTCAC----GTCGAGC-----------------------------------------------------------------------------GGTG????????????????????????????????????????????????????????????????????????????????????????????????????? [637] Tuber_canaliculatum_OSC59072_West_Virginia ?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????GAGCAACAATCCCAACGCGTTGCCAATG-AATGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTC---TGAGCA--GG----CC--ACCAGCCTG-AAACAACCA------ACATG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGCACTCCTCAGGGCATGCCTGTTCGAGCGTCAA-TA--GA--AACCCCCC---TCACC--CTC?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? [912] Tuber_bellisporum_JT11679_Oregon_holotype ???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????GGGA------------------------TGC?CT-------------TTAA?-----------------------GGC?TCCC--------------TTAGTA----AACCAA--TATTAAACCCT-TATAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACCCATAGTC---TGAGAA--GG----CT--ATGTGCCAT-AATTATATA------ATATG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCAC-TA--AACTAGACCCC----TCACGT-TTGACG-----TGGTATTGATGGAA-GTG----GGATAGA-------------------------AATTGCTTTACTCC-TTCAAAATTTAAA-GGCCGGAAA----AATGAT--CTCGGT--GACAGACTTGCA-G-------------------AGTGTTGTG-AAAAC------------CTAAATTAGTCTTGA-GCCAG----GTCTAGT----CCG-----------TGCTTCT------GGACCCCC-------ATCCAAT-------------------------GTAAACT----ATTAGA??????????????????????????????????????????????????????????????????????????????????????? [702] Tuber_bellisporum_JT7270_Oregon_paratype ???????????????????????????????????????????????????????????????????????????????????????????????????????ATGCCTTTA--------------------------------------------------------------------------------------------------------------------------------------AGGCTCCC--------------TTAGTA----AACCAA--TATTAAACCCT-TATAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACCCATAGTC---TGAGAA--GG----CT--ATGTGCCAT-AATTATATA------ATATG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGTGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCAC-TA--AACTAGACCCC----TCACGT-TTGACG-----TGGTATTGATGGAA-GTG----GGACAGA-------------------------AATTGCTTTACTCC-TTCAAAATTTAAA-GGCCGGAAA----AATGAT--CTCGGT--GACAGACTTGCA-G-------------------AGTGTTGTG-AAAAC------------CTAAATTAGTCTTGA-GCCAG----GTCTAGT----CCG-----------TGCTTCT------GGACCCCC-------ATCCAAT-GTA---------AACT-------------------ATTAGA??????????????????????????????????????????????????????????????????????????????????????? [628] Tuber_castellanoi_JT19924_California_paratype ???????????????????????????????????????????????????????????????????????????????????CCGTAGGTGAACCTGCGGAAGGATCATTA---------------------------------------CATATGC-----------CTGGGA------------------------TGCCTT-------------TA--------------------------AGGTTCCC--------------TGAGTAA---ACCCA---TATTTAAACCCTTATAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA---------------------------CTTGT----AGTC---TGAGAA--GA----CT--ATGTGATGT-AATTATATA------ATATG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCAC-TA--AACCAGACCCT----TCACGT-TTAACG-----TGGTATTGATGGAA-GTG----GGGCAGA-------------------------AATTGCTCTACTCC-TTCAAAATTGAAA-GGCCGGAAA----AATGAT--CTCGGT--GACAGACTTGCA-G-------------------AGTGTTGTG-AAAAC------------CTAAATTAGTCTTGA-GCGAG----GTCGAGT----CCG-----------TGCTTCT------GGACCCCC-------ATCCAAT-------------------------GTAAACT----ATTAGA??????????????????????????????????????????????????????????????????????????????????????? [650] Tuber_castellanoi_JT28069_California_holotype ?????????????????????????????????????????TCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTTCCCGTAGGTGAACCTGCGGAAGGATCATTA---------------------------------------CATATGC-----------CTGGGA------------------------TGCCTT-------------TA--------------------------AGGTTCCC--------------TGAGTAA---ACCCA---TATTTAATCCCTTATAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA---------------------------CTTGT----AGTC---TGAGAA--GA----CT--ATGTGATGT-AATTATATA------ATATG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCAC-TA--AACCAGACCCT----TCACGT-TTAACG-----TGGTATTGATGGAA-GTG----GGGCAGA-------------------------AATTGCTCTACTCC-TTCAAAATTGAAA-GGCCGGAAA----AATGAT--CTCGGT--GACAGACTTGCA-G-------------------AGTGTTGTG-AAAAC------------CTAAATTAGTCTTGA-GCGAG----GTCGAGT----CCC-----------GTGCTTCT-----GGACCCCC-------ATCCAAT-G-----------TAAACTATTAGAGTTGACCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATC????????????????????????????????????????????????????????? [667] Tuber_gibbosum_JT26632_Washington ???????????????????????????????????????????????????????????????????????????????????CCGTAGGTGAACCTGCGGAAGGATCATTA---------------------------------------AATATAC-----------CTGAGA------------------------TGCCTT-------------TA--------------------------AGGCTCTC--------------TGAGTAA---ACCCA---TATTAAACACT-TATAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACTCATAGTC---TGAGAA--GG----CT--ATTTGCCGT-AATTATATA------ATATG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCAC-TA--AACTAGACCCC----TCACGT-TTGACG-----TGGTATTGATCGAA-GTA----AGGCAGA-------------------------AATTGCTTTACTCC-TTCAAAATTGAAA-GGCCGGAAA----AGTGAT--CTTGGT--GACAGACTTGCA-G-------------------AGTGTTGTG-AAAAC------------CTAAATTAGTCTTCA-GTCAG----GTCAGGT----CCG-----------AGCTTCT------GGACTCCC-------ATTCAAT-ATA---------AACT-------------------ATTAGA??????????????????????????????????????????????????????????????????????????????????????? [649] Tuber_gibbosum_JT30580_Oregon ???????????????????????????????????????????????????????????????????????????????????CCGTAGGTGAACCTGCGGAAGGATCATTA---------------------------------------AATATAC-----------CTGAGA------------------------TGCCTT-------------TA--------------------------AGGCTCTC--------------TGAGTAA---ACCCA---TATTAAACACT-TATAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACTCATAGTC---TGAGAA--GG----CT--ATTTGCCAT-AATTATATA------ATATG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCAC-TA--AACTAGACCCC----TCACGT-TTGACG-----TGGTATTGATGGAA-GTA----AGGCAGA-------------------------AATTGCTTTACTCC-TTCAAAATTGAAA-GGCCGGAAA----AGTGAT--CTTGGT--GACAGACTTGCA-G-------------------AGTGTTGTG-AAAAC------------CTAAATTAGTCTTCA-GTCAG----GTCAGGT-----CC-----------GAGCTTCT-----GGACTCCC-------ATTCAAT-ATA---------AACT-------------------ATTAGA??????????????????????????????????????????????????????????????????????????????????????? [649] Tuber_oregonense_JT30493_Oregon_paratype ??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????GGGCTC?T--------------TTAGTAA---ACTCA---TATTAAACACT-TATAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA---------------------------CTTAC----AGTC---TGAGAA--GG----CC--ATAGGCCGT-AATCATATA------ATATG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCAC-TA--AACTATACTTC----TCACGT-CTGACG-----TGGTATTGGTAGAA-GTG----GTGCAGA-------------------------AATTGCTCCACTCC-TCTAAAATTGAAA-GGCCGGAAA-----ATGAT--CTCGGT--GAGAGACTTGTA-G-------------------AGTGTTTTG-AAAAC------------CTAAATCAGTCTTCA-GCCAG----GTTGAGT----CCG-----------TGCTTCT------GGACCCCC-------ATCCACAG------------TAACATATTAAAGTTGACCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGC?????????????????????????????????????????????????????????????? [777] Tuber_oregonense_GB284_Oregon_holotype ???????????????????????????????????????????????????????????????????????????????????CCGTAGGTGAACCTGCGGAAGGATCATTA--------------------------------------CCATATCA-----------CTGGGA------------------------TGCCCT-------------GATGGGCT------------------------------------------CATTTAGTAAACTCA---TATTAAACACT-TATAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA---------------------------CTTAC----AGTC---TGAGAA--GG----CC--ATAGGCCGT-AATCATATA------ATATG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCAC-TA--AACTATACTTC----TCACGT-CTGACG-----TGGTATTGGTAGAA-GTG----GTGCAGA-------------------------AATTGCTCCACTCC-TCTAAAATTGAAA-GGCCGGAAA-----ATGAT--CTCGGT--GAGAGACTTGTA-G-------------------AGTGTTATG-AAAAC------------CTAAATCAGTCTTCA-GCCAG----GTTGAGT----CCG-----------TGCTTCT------GGACCCCC-------ATCC--------------------------------------------------------------ACAGTAACATATTAAA?????????????????????????????????????????????????????? [617] Tuber_oregonense_JT27985_Oregon_paratype ???????????????????????????????????????????????????????????????????????????????????CCGTAGGTGAACCTGCGGAAGGATCATTA--------------------------------------CCATATCA-----------CTGGGA------------------------TGCCCT-------------GATGGGCT------------------------------------------CATTTAGTAAACTCA---TATTAAACACT-TATAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA---------------------------CTTAC----AGTC---TGAGAA--GG----CC--ATAGGCCGT-AATCATATA------ATATG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCAC-TA--AACTATACTTC----TCACGT-CTGACG-----TGGTATTGGTAGAA-GTG----GTGCAGA-------------------------AATTGCTCCACTCC-TCTAAAATTGAAA-GGCCGGAAA-----ATGAT--CTCGGT--GAGAGACTTGTA-G-------------------AGTGTTATG-AAAAC------------CTAAATCAGTCTTCA-GCCAG----GTTGAGT----CCG-----------TGCTTCT------GGACCCCC-------ATCCACA-GT-------------------------------------------------------------AACATATTAAA?????????????????????????????????????????????????????? [617] Tuber_liaotongense_OSC87602_China ????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????aTCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGCATTCCTTGGGGCATGCCTGTTCGAGCGTCAC-TG--CA--AACCCAC----TCATAA-ATATTA-----TGGTATTGATGGAA-GTG----A-ACGGAACCAATCTA-------------TGTGTTCAGGTCATCCC-ATCGAAATGTATA-AGCAGGACA----ATCAAC--CTGTGC--AATGGACTTAGT-A-------------------ACTGTCTTG-AAGAC------------ATAAACCAGTTTGTT-GCTTG----GTTTTGA----CTT-----------AGCTTCCAT----GGACCTCC-------ATCCAAG-ATAATA------AACTCTG----GGTT????????????????????????????????????????????????????????????????????????????????????????????????????? [1233] Tuber_sancarloensis_ITCV181_Mexico_holotype ???????????????????????????????????????????????????????????????????????????????????????????????????????????CATTA------------------------------------------------------------------------------------------------------------------------------------------------------TTATAATGCGTGAAA-----A---TGCCCCTAACA-CGGGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATACTCTAGAAAACT----CT----------------AAA---------------------------CTTAC----AGTC---TGAGAA--GG----CC--ATGGGCCAT-AATCTTTAA------ACATT-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCATAGGGCATGCCTGTTCGAGCGTCAC-TA--AC--AACCCCA----TCACAA-AGAGTG-----TGGTATTGGCAGAA-GTG----G-GTAGGGCTGGC----------------AGTGTTGGCCCCACTCT-GCTGGAATGAATA-GGCCGGAAA----TGTAGA-CCATGAT--AACAGACTTTCA-G-------------------AGTATCCCC-TGATG------------CTAAATTAGTTTGTA-GGCTG----GTCAGAA----TCC-----------AGGTCGTT-----GGACCCCC-------ATTCTGT-GTAAAGCAGTAA-----------TGTTGACCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATC????????????????????????????????????????????????????????? [665] Tuber_sancarloensis_ITCV885_Mexico ???????????????????????????????????????????????????????????????????????????????????????????????????????????CATTA------------------------------------------------------------------------------------------------------------------------------------------------------TTATAATGCGTGGAA---------TGCCCTTAACA-GGGGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATACTCTAGAAAACT----CT----------AAACTTAAA-------------------------------------GTC---TGAGAA--GG----CC--ATGGGCCAT-AATCTTTAA------ACATT-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCATAGGGCATGCCTGTTCGAGCGTCAC-TA--AC--AACCCCA----TCACAA-CGAGTG-----TGGTATTGGCAGAA-GTG----G-GTAGG----------------GCTGGCTGTGCTGGCCCCACTCT-GCTAGAATGAATA-GGCCGGAAA----TGTAGA-CCATGGT--AACAGACTTTCA-G-------------------AGTATCTCG-TGATG------------CTAAATTAGTTTGTA-GGCTG----GTCAGAA----TCC-----------AGGCTGTT-----GGACCCCC-------ATTCTGT-GTAAAGCAGTAA-----------TGTTGACCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATC????????????????????????????????????????????????????????? [664] Tuber_JT9769_Nepal ???????????????????????????????????????????????????????????AGTAAAAGTCGTAACAAGGTTT--CCGTAGGTGAACCTGCGGAAGGATCATTA-----------------------------------------------------------------------------------------TTAT-------------AAGG----------------------------------------------CGTGGAAAG-GCCCC---TGTGACCGTCC-T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACAAGGGCCTAATAGAAAA----CT--------------CTAAA---------------------------CTTAC----TGTC---TGAGAA--GG----CC--ACGTGCCGT-AATCTTTAA------ACATT-TTAAAACCTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCATAGGGCATGCCTGTTCGAGCGTCAC-TA--AC--AACCCCA----TCACAA-TGAGTG-----TGGTATTGGCAGAA-GTG----G-GTAGGGCTAGC----------------ATTGCTGGCCCCACTCT-GCTGGAATGAATA-GGCCGGAAA----TGTAGA-CCATGGT--AACAAACTTTCA-G-------------------AGTATTTTA-AGATG------------CTAAATTAGTTTGTA-GGCTG----GTCAGAA----TCC-----------AGGCCATT-----GGACCCCC-------ATTCTGT------------------------------------GTAAAGCAGTAATGTT????????????????????????????????????????????????????????????????????????????? [649] Tuber_sp_ITCV884_Mexico ??????????????????????????????????????????????????????????????????????????????????????????????????????????????TA---------------------------------------TACATAT-----------CTGGGA------------------------TACCAA------------------TAAGGTCCCTGAATCCAT-----CTCCTCAC--------------TGTGTACCA-ATCCA---TGTTGCTTTCC-CAGGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTCCTGGGGAAGGT----CC----------CAACCCAAC------------------ACTGATAATTGAGTGTGTAGTC---TGAGTA--GG----CC--CAGTGCCTTGAAATTTTAA------ACAAG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGCATTCCTTGGGGCATGCCTGTTCGAGCGTCAC-TA--CA--AACCCTC----TCATAG-ATACTA-----TGGTATTGATGGAA-GTG----A-ACTGTATCCATTGG-------------TGTACTCACACCACTCC-ATCGAAATGAATA-GGCAGGACA----AGTGGC--AACTGC--AATCGACTTAGTAA-------------------ATGGTTTTC--AGAC------------ATGGACCAGTCCTTT-GCTAC----GTTGCAC------------------AGCCTGTATCCATGGACTCCC-------ATCCAGTGAG----------CACTTTG----GGTTGACCTCGAATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATC????????????????????????????????????????????????????????? [730] Tuber_sp_ITCV908_Mexico ?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????TCTCCTCAC--------------TGTGTACCA-ATCCA---TGTTGCTTTCC-CAGGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCCCTGGGGAAGGT----CC----------AACCCAACA-------------------CTGATAATTGAGTGTGTAGTC---TGAGTA--GG----CC--CAGTGCCTTGAAATTTTAA------ACAAG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGCATTCCTTGGGGCATGCCTGTTCGAGCGTCAC-TA--CA--AACCCTC----TCATAG-ATACTA-----TGGTATTGATGGAA-GTG----A-ACAGTATCCATTGG-------------TGTACTCACACCACTCC-ATCGAAATGAATA-GGCAGGACA----AGTGGC--AACTGC--AATCGACTTAGTAA-------------------ATGGTTTTC--AGAC------------ATGGACCAGTCCTTT-GCTAC----GTTGCAC------------------AGCCTGTATCCATGGACTCCC-------ATCCAGTGAG----------CACTTTG----GGTTGACCTCGAATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATC????????????????????????????????????????????????????????? [826] Tuber_brumale_GB21_Italy ???????????????????????????????????????????????????????????????????????????????????????????????????????????CATTA---------------------------------------TAAATAT-----------CTGGGA------------------------?TC?------------------------GTCCCTGATCTTC------AATCTCTC--------------TGTGTACCA-ATCCA---TGTTGCTTTCA-CAGGC--------------------TAAGTGATATT-TCCTACTCGTCAGTGGTACACAATGTCAGAGCCAATCTAATGCTTTCCACTATTGCTATCT--------------------------------TGTACTACCTGACTCCAGTTGCTACACATTGCCGATATATCCTTCCTTTGATTATCTAAGCTATTGTACTTGCTATGGTATCGATCGTTAGACTGTATTGGTGTCTTGCTACAAATTGGACAGGTTGACAGGTAGTTGGTCATTACATTCTATTTGTTCTGTCATTAATACCGCAAACGTTTAGCTATTATATTGTTAGAGCTATGTAGGCTCCTGTGGAAGGT----CT----------TCACCTTAA-----------CAAATTGTATGAGTA---TGT----AGTC---TGATAT--GG----CC--AAGTGCCAG-AT-TTATTG----AGATATT-TGAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATAGCGCCCTTTGGTATTCCTTAGGGCATACCTGTTCGAGCGTCAC-TG--CT--AACTTCC----TCACAA-ATATTG-----TGGTCTTGGTTGCT-GTA----G-ATTGTGGGTATATTTAGTACATA----TGCTCACGAGATACTCT-GCTAAAATTCATC-AGGTGGATA-----CCAGG-TATAAAT--AACAGACTTTAT-A-------------------AATGTCTAC-AGGAT------------ATGAATTAGTTGTTT-AGTAT----ATCTGAT--------------------ACTGCTATCATGGATCCCC-------------------------------------------ATCTTGAATAAATTATG??????????????????????????????????????????????????????????????????????????????????? [990] Tuber_brumale_GB22_Italy ?????????????????ACTGCCAGGTGCAAAGTTGGTCAAACTTGGTCATTTA?AGGAAGTAAAAGTCGTAACAAGGTTT--CCGTAGGTGAACCTGCGGAAGGATCATTA---------------------------------------TAAATAT-----------CTGGGA------------------------TTCAA-----------------------GTCCCTGATCTTC------AATCTCTC--------------TGTGTACCA-ATCCA---TGTTGCTTTCA-CAGGC--------------------TAAGTGATATT-TCCTACTCGTCAGTGGTACACAATGTCAGAGCCAATCTAATGCTTTCCACTATTGCTATCTTGTACTACCTGACTCCAGTTGCTACACATTGCCGATATATCCTTCCTTTGATTATCTAAGCTATTGAA?ACTGCTGGCCAGCTGCCGGCTAGTAGTTCTACTTGCTATGGTATCGATCGTTAGACTGTATTGGTGTCTTGCTACAAATTGGACAGGTTGACAGGTAGTTGGTCATTACATTCTATTTGTTCTGTCATTAATACCGCAAACGTTTAGCTATTATATTGTTAGAGCTATGTAGGCTCCTGTGGAAGGT----CT----------TCACCTTAA-----------CAAATTGTATGAGTA---TGT----AGTC---TGATAT--GG----CC--AAGTGCCAG-AT-TTATTG----AGATATT-TGAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATAGCGCCCTTTGGTATTCCTTAgGGCATACCTGTTCGAGCGTCAC-TG--CT--AACTTCC----TCACAA-ATATTG-----TGGTCTTGGTTGCT-GTA----?--------------------------------------------------------ATT???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? [1081] Tuber_californicum_JT28058_California ??????????????????????????????????????????????????????????????????????????????????????????????????????AGGATCATTA---------------------------------------CAAATGT-----------CTGGGA------------------------TGTCCA-------------ATTTG----GCTCCTAAGCAAA------CACTTCTA--------------TGTGTACTC-TCCCA---TGTTGCTTCCC-CAGAC---------------------CAGTGGCCAC-TGCTGCCAGTCCGGCCTCTTAACG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTTTCTGGTCTGAGATGTCTGGGGAAGGT----CC----------ATTATTAAA----------------CTTTTAAACCAATTGCC---AGTC---TGAGAA--GG----CC--ATGTGCCGT-AA-TCTTTA----AAACATA-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATACCTGTTCGAGCGTCAC-TA--AA--AACCATC----TCATAT-ATAATG-----TGGTATTGGTAGAA-GTG----G-GTAGTATTAATA---------------GTACTTTGTCTTACTCT-ACTGAAATGCATA-GGCCAGAAA----AGTGGA-CCATGGT--AACAGACTCTCA-G-------------------AGTGTTTTA-AAATG------------CTAAATTAGTCTTAC--CACA----GTTGATA----TCT-----------GAGCTACC-----GGATCCCC-------ATTTAGTC------------CAAACCAGAGAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATC????????????????????????????????????????????????????????? [776] Tuber_cf_borchii_China ???????????????????????????????????????????????????????????????????????????????????????????????????????????CATTA-----------------------------------CTAAACAATGT-----------GCGGGA------------------------TATCCC-------------ACCGGGG--ACTCCTTAGCAAAA-----CACATCCA--------------TGAGTACCC-TCCCA---TGTTGCTTCCC-CAGAC---------------------CAGTGGCCAC-TGCTGCCAGCTCTGTCCTCTAATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGGATCGTGGGTTGAGGTGTCTGGGGAAGGG----CCAACTGTCAAAACTTTTGAA---------------------------CCAATTTGTTGTC---TGAGAA--GG----CC--ATATGCCGC-AATATTTAA----AAACATG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCTTAGGGCATGCCTGTTCGAGCGTCAC-TA--AA--AACCCCC----TCACAG-ATAATG-----TGGTATTGGTAGAA-GTG----G-GTAGTACTAACA---------------GTGCTTTGTCCCACTCT-ACCAAAATTAATA-GGCCAGAAA----AGTGAA-CTTGGGT--AACAGACTCTCA-G-------------------AGTGTTTTA-AAATG------------CTAAACTAGTCTTAT--CCAG----GTTGGAA----TCT-----------GAGCCACT-----GGACCCCC-------ATTTAGT--------------------------------CCAAAACAGAGAG???????????????????????????????????????????????????????????????????????????????????? [769] Tuber_dryophilum_GB35_Italy ???????????????????????????????????????????????????????????????????????????????????????????????????????????CATTA---------------------------------------CATATGT-----------CCGGGA------------------------TGTCCA-------------A?GGG----GCTCCCAAGC?GAA-----CACATC?A--------------TGTGTACAC-TCCCA---TGTTGCTTCCC-CAGAT---------------------CAGTGGCCAC-TGCTGCCAGCCCTGCCCTTCATGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATTTCGGGTTGAGGTGTCTGGGGAAGGG----TCCAATATCAAACTTTTGAAC------------------------AAATCAGT----TGTC---TGAGAA--GG----CC--ATCCGCCGC-AAATTTTAA----AAATATATTAAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGTCTGTTCGAGCGTCAC-TA---A--AACCGCC----TCACAT-ATAATG-----TGGTATTGGTAGAA-GTG----G-GTAGTGCTAAAA---------------GCACCTTGTTCTACTCT-ACTGAAATGAATA-GGCCAGAAA----AGTGAA-CCATGGT--AGTAGACTCTCA-G-------------------AGTGTTTTA-ATATA------------CTAAACTAGTCTTA--GCCAG----GTTGGAA----TCT-----------GAGTTCCT-----GGACCCCC-------ATTTAGTC------------TAAATAAGAGAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATC????????????????????????????????????????????????????????? [778] Tuber_dryophilum_GB37_Italy ???????????????????????????????????????????????????????????????????????????????????????????????????????????CATTA---------------------------------------CATATGT-----------CTGGGA------------------------TGTCCA-------------ATGGG----GCTCCCAAGCAAAA-----CACATCCA--------------TGTGTACAC-TCCCA---TGTTGCTTCCC-CAGAT---------------------CAGTGGCCAC-TGCTGCCAGCCCTGCCCTTCATGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATTTCGGGTTGAGGTGTCTGGGGAAGGG----TCCAATATCAAACTTTTGAA----------------------------CAAATCAGTTGTC---TGAGAA--GG----CC--ATCCGCCGC-AAATTTTTA----AAATATA-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCAC-TA---A--AACCGCC----TCACAT-ATAATG-----TGGTATTGGTAGAA-GTG----G-GTAGTGCTAAAA---------------GCACCTTGTCCTACTCT-ACTGAAATGAATA-GGCCAGAAA----AGTGAA-CCATGGT--AGTAGACTCTCA-G-------------------AGTGTTTTA-ATATA------------CTAAACTAGTC-TTA-GCCAG----GTTGGAA----TCT-----------GAGTTCCC-----GGACCCCC-------ATTTAGT-C-----------TAAATAAGAGAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATC????????????????????????????????????????????????????????? [777] Tuber_excavatum_BM100_Spain ?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????C?TCT-----------GTGCGG------------------------TTCCCG-------------GGTTC-----------------------?AACCCTC--------------CGAGTACCC-ATCCA---TGTTGCTTCCC-CAGGC---------------------CGGCAGTCCT-TGCTGCCCGTCTCCCTCCATGTCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTCGTGGGATGGAGGTGTCTGGGGAGGGG----TCCAAACAGAAACTCTTGTGA------------------------ACACAGGC----AGTC---TGAGCG--GG----CC-CATGTGCCCTGTGAATATTG-----AACAAG-TTATAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTCGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCAC-TA--AC--AACCTCC----TCACGC-ACCCCG-----TGGTATTGGTGGAA-GCT----A-GCCGTGGGCCATCTC------------GGCTGCGGCGCTGCTCT-GCTGAAATGCATA-AGCAGGACA----ACTGGG-CCTCAGC--GAGTGACTTAGTAA-------------------AGTGTCATC-AAGAC------------CTAGAGCAGTCATCA-GCTAT----GGCTTGC----CCT-----------GCCCACCC-----GGACACTC-----CCATCCGGC-GTG---------AACCCTT----GGTTGACCTCGGATCAGGTAGGCATACCCGC?????????????????????????????????????????????????????????????????????????? [811] Tuber_excavatum_China_GQ217540 ???????????????????????????????????????????????????????TGGAAGTAAAAGTCGTAACAAGGTTT--CCGTAGGTGAACCTGCGGAAGGATCATTA----------------------------------------AAAAGT-----------GTAGGG------------------------GACCCG-------------TGTGTTCGGTCCCCCACCCCA-------AACCTCCC--------------CGAGTACCC-ATCCA---TGTTGCTTTCC-CAGGC---------------------CAGCAGCCCT-TGCTGCCCGTCCCACCATGCCCAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGCAGGACGGAGGTGCCTGGGGAAGGG----CCCAAACTGAAACTCTGGTGG------------------------ACACAGGC----TGTC---TGAGTG--GG----CC--ATGTGCCCG-GCAAATTGA------ACAAG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCTCAGGGCATGCCTGTTCGAGCGTCAC-TA--GC--AACCTTC----TCACGG-ATCCCG-----TGGTGTTGGTGGAA-GCT----C-CCCGTGGCCCTCCT-------------GGTCGCGCCGCAGCTCC-GCTGAAATGCATA-GGCAGGACA----AGTTGG-CCTCAGC--GAGCGACTTAGT-A-------------------GGTGTCGTC-AAGAC------------GTACAGCAGTCCGCA-GCTAG----GCCTCGC----CCT-----------GCACATCC-----AGATCCCC--CCCCTATCTGGT-GTG---------ATCTCTCTCTAGGTTGACCTCGGATCA????????????????????????????????????????????????????????????????????????????????????????? [785] Tuber_excavatum_OSC80639_Italy ???????????????????????????????????????????????????????????????????????????????????????????????????????????CATTA---------------------------------------AAAAGTA-----------TCGGGA------------------------CCCCCA-------------TATCCG---GTCCCCGAGCTCCA-----AACCCCTC--------------CGAGTACCC-ATCCA---TGTTGCTTTCC-CAGGC---------------------CAGCAGCCAT-TGCTGCCTGTCTGACCATGCCCGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCACAGGACAGAGGTGCCTGGGGAGGGG----CTCAAACAGAAACTCTAGTAC-----------------------ACA-CAGGC----TGTC---TGAGTG--GG----CC--ATGTGCCCTGCAAGATTGA------ACGAG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTCGGCATTCCTTAGGGCATGCCTGTTCGAGCGTCAC-TA--AC--AACCTTC----TCACGG-ATCCCG-----TGGTAGTGGC?GAA-GCT----CCACTGTGCCCCTCTG-------------GGCTGCGGTGCAGCTCC-GCTGAAATGCATA-AGCAGGACA----AGTGGG-CCTCAGC--GAGTGACTTAGT-A-------------------AGTGTCTTG-AAGAC------------GTAGAGCAGTCAGCA-GCTAG----GCCATGC----CCT-----------GCCCACCA-----GGACTCCT--CCCCCATCTGGT-GTG---------AACTCTT----GGTTGACCTCGGATCAGGTAGGCATACCCGCTGA-ACTTAAGCATATCAATAAGCGGAGGAAAAGAAACCAACAGGGATTGCCTCATA????????????????? [784] Tuber_nitidum_BM105_Spain ??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????GAATC---AGC----AGTC---TGAGTT--GG----CC--CAGTGCCGT-CTTCTTTGA------ATAAG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCTTGGGGCATGCCTGTTCGAGCGTCAC-TA--CA--AACCCCC----TCATAT-GTATTA-----TGGTATTGATGGAT-GTG----A-ACTCAGGCCTAGAA-------------TGCACCTCAGTCACCCC-GTCGAAATGCATA-GGCAGGACA----ATAAAC--CTCCGC--AAGGGACTTAGT-A-------------------AATGTTATG-AAGAC------------ATAAACCAGTCCGTC-GCTCG----GTTCTGTT----CT-----------GGCCTCCAC----GGACCTCC-------ATCCGAC-ATG---------AAATCTG----GGTTGACCTCGGATCAGGTAGGGATACCCGCTGA-ACTT?????????????????????????????????????????????????????????????????? [1203] Tuber_ferrugineum_MA2721_Italy ???????????????????????????????????????????????????TTAGAGGAAGTAAAAGTCGTAACAAGGTTT--CCGTAGGTGAACCTGCGGAAGGATCATTA---------------------------------------TTTGTTT-----------ATGGGA------------------------CACAAA-------------AGTG-----TTCTCTGATACAA------ACCCTCTC--------------TGTGTACCA-ATCCA---TGTTGCTTTCC-CAGGT--------GGTTGGTTTCAGTTGATGTCCAA-TCCTGCATGCTAGCTGAGTTAATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCACTAAGCGGGTCCCTGGGAAAGGG----CCTTAC------CAATGCAAA----------------CATTTGAATC---AGC----CGTC---TGAGTT--GG----CC--CAGTGCCGC-ATTATTTGA------ATAAG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGCATTCCTTGGGGCATGCCTGTTCGAGCGTCAC-TG--CA--AACCCGC----TCATAA-ATATTA-----TGGTAATGATGGAA-GTG----A-AGTGAGGACAGTAA-------------TGTGCCTCGGTCACCCC-ATTGAAATGTATT-GGCAGGACA----ATTAAC--CTCTGC--AATGGACTTAGT-A-------------------ACTGTTTTG-AAGAC------------ATCAATCAGTCAATT-GCGAG----GTTCTGG----CCT-----------GGCCCCGAT----GGATTTCC-------ATCAAAG-ATG---------AACTCTG----GGTTGACCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATCAATAAG??????????????????????????????????????????????????? [782] Tuber_fulgens_M2435_Italy ???????????????????????????????????????????????????????????????????????GTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTA--------------------------------------AAAAATGG-----------TTGGGA------------------------CCCCCC-------------ACATAAG--GTCCCCGAGCCCA------AACCTCCC--------------TGAGTACCA-ATCCA---TGTTGCTTCCC-CAGGC---------------------CAGCAGCCAT-TGCTGCCCGTCCGGCCGTTCCTGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCACAGGACGGAGGTGCCTGGGGAGGGG----TCCAAAAGCAGAAACTCTGGT----------------------GCACACATGC----TGTC---TGAGTT--GGTGGGCC--ATGTGCCCG-GTTAATTGA------ATTAT-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCTTAGGGCATGCCTGTTCGAGCGTCAC-TA--GC--AACCATC----TCACGG-ATCCCG-----TGGTCTTGGTGGAA-GCT----T-CCTGCGGCCCCTTT-------------GGCTGCAGCAAAGCTCC-GCTGAAATGTATA-AGCAGGACA----AACAGG-CCCCGGC--GAGTGACTTAGT-A-------------------AGTGTCGTG-AAGAC------------GTAGACCAGTCAGCA-GCCAG----GCCTTGC----CCT-----------GTTCACCCAGACACCCCCCCC-------ATCTGGT-GTG---------ATCTCTT----GGTTGACCTCGGATCAGGTAGGCATACCCGCTGA-ACTTAAGCATATC????????????????????????????????????????????????????????? [790] Tuber_indicum_A_GB236_China ???????????????????????????????????????????????????????????????????????????????????????????????????????????CATTA---------------------------------------TGATGCT-----------TTGGGA------------------------TACCGT-------------TGTGT----ATTCCTGAACACA------AACCTCCC--------------TGCGTATCA-CTCCA---TGTTGCTTCCA-TGGGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAGCCACTGTGCTGGTACCTGTGGGAGAT----CT----------CCACATTAA-----------CAGAGTATTTGATTA---CGC----CGTC---TGAGCT--GG----CC--ACGTGTCAG-AT-TTACT--------GAAG-TAAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAGGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCAC-TA--CA--CACCTTA----TCACAA-CATTTG-----TGGTCTTGGCAGGA-GTG----A-ATTGCTAGTCTATGACAATA-------TTCCAGCTGTCCACCAT-GCTGAAAATTATG-GGAAGGTTA-----CCAGG-CGTGAAC--AACAGACTTTGTAA-------------------AGGGTTGCA--GGAC------------CTGTATCAGTCACCA-GTCAT----GTCTGGT-------------------GCCTTACCTTAGGGACCCCC-------ATCCTAG-ATG---------AACTATG----GGTTGACCTCGAATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATC????????????????????????????????????????????????????????? [746] Tuber_indicum_A_GB240_China ???????????????????????????????????????????????????????????????????????????????????????????????????????????CATTA--------------------------------------TGAATGCT-----------TTGGGA------------------------TACCGT-------------CGTGT----ATTCCTGAACACA------AACCTCCC--------------TGCGTATCA-CTCCA---TGTTGCTTCCA-CGGGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAGCCACAGTGCTGGTACCTGTGGGAGAT----CT----------CCACGTTAA-----------CAGAGTATTTGATTA---CGC----CGTC---TGAGCT--GG----CC--ATGTGTCAG-AT-TTACT--------GAAG-TAAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAGGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCAC-TA--CA--CACCTTA----TCACAA-CATTTG-----TGGTCTTGGCAGGA-GTG----A-ATTGCTAGTCTATGAAAATA-------TTCCAGCTGTCCACCAT-GCTGAAAATTATG-GGAAGGTTA-----CCAGG-CGTGAAC--AACAGACTTTGTAA-------------------AGGGTTGCA--GGAC------------CTGTATCAGTCACCA-GTCAT----GTCTGGT----CCT-----------TACCTTAG-----GGACCCCC-------ATCCTAG-ATG---------AACTATG----GGTTGACCTCGAATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATC????????????????????????????????????????????????????????? [746] Tuber_indicum_B_GB237_China ???????????????????????????????????????????????????????????????????????????????????????????????????????????CATTA--------------------------------------TAAATACT-----------TTGGGA------------------------TACCAT-------------TGTGT----ATTCCTGGACACA------AACCTCTC--------------TGCGTATTA-CTCCA---TGTTGCTTCCA-CAGGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAGCTATCATGCTGGCACCTGTGGGAGAT----CT----------TCACATTAA-----------CAGAGTACTTGATTA---TGC----TGTC---TGAGCT--GG----CC--ACGTGTCAG-AT-TTACT--------GAAG-TAAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAGGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCAC-TA--CA--CACCTTA----TCACAA-TATTTG-----TGGTCTTGGCAGGA-GTG----A-ATTGCTGGTCTATGGAAGTA-------TTCCAGCCGTACACAAT-GCTAAAAAATATG-GGAAGGTTA-----CCAGA-TATGAAC--AACAGACTTTGTAA-------------------ATGGTTGTA--GGAC------------CTAGATCAGTCACAA-GTCAT----GTCTGGT----CCC-----------TAAGGACC-TTAAGGACCCCC-------ATCCTAG-ATG---------AACTATG----GGTTGACCTCGGATCAGGTAGGAATACCCGCTGA-ACTTAAGCATATC????????????????????????????????????????????????????????? [750] Tuber_indicum_B_JT29410_Oregon ????????????????????????????????????????????????????????????????????????????????????????GGTGAACCTGCGGAAGGATCATTA--------------------------------------TAAATACT-----------TTGGGA------------------------TACCAT-------------TGTGT----ATTCCTGAACACA------AACCTCTC--------------TGCGTATTA-CTCCA---TGTTGCTTCCA-CGGGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAGCTATCATGCTGGCACCTGTGGGAGAT----CT----------TCACATTAA-----------CAGAGTGCTTGATTA---TGC----TGTC---TGAGCT--GG----CC--ACGTGTCAG-AT-TTACT--------GAAG-TAAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAGGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCAC-TA--CA--CACCTTA----TCACAA-TATTTG-----TGGTCTTGGCAGGA-GTG----A-ATTGCTGGTCTATGGAAGTA-------TTCCAGCCGTACACAAT-GCTAAAAAATATG-GGAAGGTTA-----CCAGA-TATGAAC--AACAGACTTTGTAA-------------------ATGGTTGTA--GGAC------------CTAGATCAGTCACAA-GTCAT----GTCTGGT----CCC-----------TAAGGACCTTAA-GGACCCCC-------ATCCTAG-ATG---------AACTATG----GGTTGACCTCGGATCAGGTAGGAATMCCCGCTGA-ACTTAAGCATATC????????????????????????????????????????????????????????? [750] Tuber_lyonii_GA21_Georgia ???????????????????????????????????????????????????????????????????????????????????????????????????????????CATTA---------------------------------------TGCATAT-----------CTGGGA------------------------TACCAA-------------GAGG-----GTCCCTGAATCCAT-----CTCCTCAC--------------TGTGTACCA-ATCCA---TGTTGCTTTCC-CAGGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGCCTGGGAGAGGT----CC----------AACCCAACA-------------------CCAATAATTGAGTCCGCAGTC---TGAGTA--GG----CC--TAGCGCCTTGAATGTTTGA------ACAAG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTCTTGGTATTCCTTGAGGCATGCCTGTTCGAGCGTCAC-TA--CA--AACCCTC----TCATAG-TTATTA-----TGGTATTGATGGAA-GTG----A-ACTGTGTCTATTTA-------------TGTACTCACACCACTCC-ATTGAAATGAATA-GGCAGGACA----AGTGAC--AACTGC--AATGGACTTAGTAA-------------------ATGGTTTTC--AGAC------------ATGGACCAGTTCTTT-GCTAT----GTTGTAC------------------AGCCTGTATCCATGGACTCCC-------ATCCAGT-AAG---------CACCTTG----GGTTGACCTCGAATCAGGTAGGGATACCCGCTGA-ACTTAAGCATA??????????????????????????????????????????????????????????? [729] Tuber_lyonii_OSC58244_Texas ???????????????????????????????????????????????????????????????????????????????????????????????????????????CATTA---------------------------------------------------------------------------------------------------------------TAAGGTTCCTGATCCAT------CTCCTCAC--------------TGTGTACCA-ATCCA---TGTTGCTTTCC-CAGGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCCCTGGGGGAGGT----CC----------AACCCAACA-------------------CTGATAATTGAGTCTGTAGTC---TGAGTTA-GG----CC--TAGAGCCTAGAACTTTTAA------ACATG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCTTGGGGCATGCCTGTTTGAGCGTCAC-TA--CA--AACCCTC----TCATAG-ATATTA-----TGGTATTGATGGAA-GTG----A-ACTGTGTCTACTGG-------------TGTACTCGCACCACTCC-ATCGAAATGAATA-GGCAGGATA----GGTGGC--AACCGC--AAGCGACTTGATAA-------------------ACGGTTTTC--AGAC------------ATGGACCAGTCCTTT-GTTAT----GTTGCGC------------------AGCCTGTATCTATGGACTCCC-------ATCCACT-AAG---------CACTTTG----GGTTGACCTCAAATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATC????????????????????????????????????????????????????????? [710] Tuber_magnatum_GB12_Italy ???GGAGGTTGGCACGGCCACTGCGGGGCGCAAAGTTGGTCAAACTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTA---------------------------------------CACATGT-----------CGGGGG------------------------CGCCAA----------------GGATGCGTCTCCGAATCCTG-----AATATCTC-------------CTGTGTACCA-TGCCA---TGTTGCTTCCC-CAGGG---------------------TCACGGTCAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGCCGCCTGGGAGGAGG-----------GCACAGTCCCAAAA----------------ACTACTGTCATCCTACCAGCAGTC---TGAGAAAGGG----CCCATCAGGCCTGACAAACTTAA-------ACAG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAGGTAATGTGAATTGCAGAACTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGCATTCCTCAGGGCATGCCTGTTTGAGCGTCAC-TG--AA--AACCCAC----TCACGGAATCACG-----TGGTGCTGATGGAG-GTG----GCTTGGTACCGCAGCGGCG----------GTGGCCGGGTCCACCCT-GTCGAATTTCATT-GGGAGGATG-----ACGGACCCCCGGC--TGCTGACTTTGTAGAC-----------------ATCGCCTTG--AAAT------------GCGTGCTAGTTGCCA-GTCAG----GCCCGGT----CCTGCACGCTTGAGGATCCCTGCCATGGGATCCAC------TGTCCAACTG----------------------GGTTGACCTCAGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATC????????????????????????????????????????????????????????? [770] Tuber_magnatum_GB13_Italy TGCGGAGGTTGGCACGGCCACTGCGGGGCGCAAAGTTGGTCAAACTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTA---------------------------------------CACATGT-----------CGGGGG------------------------CGCCAA----------------GGATGCGTCTCCGAATCCTG-----AATATCTC-------------CTGTGTACCA-TGCCA---TGTTGCTTCCC-CAGGG---------------------TCACGGTCAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGCCGCCTGGGAGGAGG-----------GCACAGTCCCAAAA----------------ACTACTGTCATCCTACCAGCAGTC---TGAGAAAGGG----CCCATCAGGCCTGACAAACTTAA-------ACAG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAGGTAATGTGAATTGCAGAACTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGCATTCCTCAGGGCATGCCTGTTTGAGCGTCAC-TG--AA--AACCCAC----TCACGGAATCACG-----TGGTGCTGATGGAG-GTG----GCTTGGTACCGCAGCGGCG----------GTGGCCGGGTCCACCCT-GTCGAATTTCATT-GGGAGGATG-----ACGGACCCCCGGC--TGCTGACTTTGTAGAC-----------------ATCGCCTTG--AAAT------------GCGTGCTAGTTGCCA-GTCAG----GCCCGGT----CCTGCACGCTTGAGGATCCCTGCCATGGGATCCAC------TGTCCAACTG----------------------GGTTGACCTCAGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATC????????????????????????????????????????????????????????? [770] Tuber_magnatum_JT19460_Italy ???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????AGGA------------------------TGC-------------------------GTCTCCGAATCCTG-----AATATCTC-------------CTGTGTACCA-TGCCA---TGTTGCTTCCC-CAGGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCACGGTCACTGTGCCGCCTGGGAGGAGG----GCACAG------TCCCAAAAA-----------------CTACTGTCATCCTACCAGCAGTC---TGAGAAAGGG----CCCATCAGGCCTGACAAACTTAA-------ACAG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAGGTAATGTGAATTGCAGAACTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGCATTCCTCAGGGCATGCCTGTTTGAGCGTCAC-TG--AA--AACCCAC----TCACGGAATCACG-----TGGTGCTGATGGAG-GTG----GCTTGGTACCGCAGCGGCG----------GTGGCCGGGTCCACCCT-GTCGAATTTCATT-GGGAGGATG-----ACGGACCCCCGGC--TGCTGACTTTGTAGAC-----------------ATCGCCTTG--AAAT------------GCGTGCTAGTTGCCA-GTCAG----GCCCGGT----CCT-----------GCACGCTTGA---GGATCCCT------------------------------------------GCCATGGGATCCACT----------------GTCCAACTGGGTT????????????????????????????????????????????????????????? [768] Tuber_sp_RH73_Iowa ????????????????????????????????????????????????????????????AAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTA---------------------------------------GACATAT-----------CTGGGA------------------------TGCCAT-------------TCTGG----GTCCCCGACTCCA------AACCCCTC--------------TGTGTACCA-ATCCA---TGTTGCTTCCA-CAGTTTAAGAGTTCCTCTGTGGGTGGCATTTGCCAT-CGTTGCCTGCTCTGGTTGTTGACC--------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTCCGTTGTTGCCGTCTGCTTGAAGTGGATGAGTGCAGCAGCCCAGACTGCTATACCGTGCAGGTATCGCCAGCTATAACCGCCCATATTCAGCCTCCACACTGGTGGAGCTATTGAGGCATCTGTGAGAGGG----TCCAAATCCAACCATGTCTGT------------------------GAACCAGC----TGTC---TGACCT--GG----CC--ATGTGCCGG-ATTCAATAA------ACAAG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATAGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGTGTCAC-TA--CA--AACCCCCC---TCACAG-ATATTG-----TGGTGTTGGTAGGA-GTG----G-GTGACAGGTGCAAT-------------GGTGCCTGTTCTACTCT-GCCGAAATTCATT-GGAAGGACA-----GTGAG-CCTGATA--AGTAGACTTTGT-A-------------------AATGTCCAT-GGGAT------------ATGAATCAGTCTTGT-ACCCG----GCCCAGT----CCT-----------GCCTACCC-----GGACCCCC------CATCCATG-ATG---------AACAATG----GGTTGACCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATCAATAAGCGGAGGAAAAGAAACCAACAGGGATTGCCCCCA?????????????????? [904] Tuber_sp1_K201_Japan ??????????????????????????????????????????????????????????????????????????????????????????????????CCCGTCCAGCATTC--------------------------------------------------------------------------------------------------------------------------------------ACCCTC----------------TGTGTACCCTTACCG---TGTTGCTTCCC-CAGGC---------------------CAGCGGCCAC-TGCTGCCAGCCACCCGGACCGCCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCGCGGTCGGGGTCCTGAGGTGCCTGGGGGAGGG----CC----------CAACCGCAC------------AATCCGTCGCTCATCCAAGC----AGTC---TGAGCA--GG----CC--ACCCGCCTG-AG-AAGGTA------ACATG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGCATTCCTCAGGGCATGCCTGTTCGAGCGTCAA-TA--GA--AGCCCTTCCAGTCACCC-TCCCGG-----TGGTACTGGGGGAG-GTG----G-GTAGCCCACCA----------------GGCATGAGGCCCACCCCTCCCGAAAGCCATG-GGCCCGCGA----GCCGAC--AGCCGT--CGCTGACTTTGT-A-------------------AGAGCTTGG-AAAGC------------CTGAACCAGTCGGCA-GCGCG----CGTCGGT------C-----------GGCGCCCCAAACTGGACCCCC------AATCCAGCAAGA---------CAATCT-----GGGTGACCTCGGATCA????????????????????????????????????????????????????????????????????????????????????????? [751] Tuber_sp2_K215_Japan ?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????ccct-------------cccgg----caccccgagccagc-----aaaccccc--------------tgtgtacactttcca---tgttgcttccc-caggc---------------------cagcggccac-ctgccgccagcccgacccctcccg-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------cggtcaaccacgggctgaggcgcctgggggaggt----cc----------ctgccccaa-----------caaagtggttcaatc-aatgc----agtc---tgagca--gg----cc--acctgcctg-aaccaggta------acatg-ttaaaactttcaacaacggatctcttggctctcgcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctctggcattcctcagggcatgcctgttcgagcgtcaa-ta--ga--aaccccac---tcaccc-tcccgg-----tggtactgggggag-gtg----g-gtcgccctcca----------------ggcgcgagatccacccc-cctgaaaagcatg-ggcccgaga----gacgac--ggctgc--gactgacactct-a-------------------agcgctttctgaagc------------cagaaccagtccacc-gccat----gtcgagcggcgcac-----------cact---------ggagcccc------catccagc-acaaa-------cactctg----ggttgacctc??????????????????????????????????????????????????????????????????????????????????????????????? [861] Tuber_sp14_K186_Japan ?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????aatgt-----------gcggga------------------------tatccc-------------accgggg--actccttagcgaaa-----cacattca--------------tgagtacac-ttcca---tgttgcttccc-cagac---------------------cagtggccac-tgctaccagctctgttctacaatg---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------tgggatcttgagttgaggcgtttggggaaggg----ccaactgttaaacctttgaac------------------------catttagt----tgtc---tgagaa--gg----cc--atatgccgc-aa-cattta----aaacatg-ttaaaactttcaacaacggatctcttggctctcgcaacgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcaccctttggcattccttagggtatgcctgttcgagcgtcac-ta---a--aaccgcc----tcacag-atagtg-----tggtattggtagaa-gtg----g-gcagtactaaca---------------gtgctctctcctactct-acccaaatgaata-ggccagaaa----agtgaa-ctatggc--atcggactctca-g-------------------agtgttttc-aaatg------------ctaaactagtcttgc--ctag----gtttgaa----tct-----------gagccact-----ggaccccc-----ccatttagt-cca---------aacaaag---aggttgacctcggatcaggtagggatacccgctga-acttaagcatatcaataa???????????????????????????????????????????????????? [821] Tuber_macrosporum_JT13362_Italy ?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????TTCAGGTTCCCCGAGCAAA------CAACCCCA--------------TGTGTACAC-TTCCA---TGTTGCTTCCC-CAGGC---------------------CAGCGGCCAC-TGCTGCCAGCCCGACCCCTCCGGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTCGACCACGGGCTGAGGTGCCTGGGGGAGGG----CC----------CATCCCCAA------------CACGTCGCTCATCA--AAGC----AGTC---TGAGCA--GG----CA--GTCGGCCTG-AATCAAGTA------ACATG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGCATTCCTCAGGGCATGCCTGTTCGAGCGTCAA-TA--CA--AACCCCCC---TCACCC-TCCTGG-----TGGTGCTGGCGGAG-GTG----G-GTCGCCCTCCC----------------GGCGACAGGCCCACCCC-GTCGAAACTCATG-GGCCCGAGA----GCCGAC--GGCTGC--GACTGACATTCC-A-------------------AGCGCTTTG-AAAGC------------CAGAACCAGTCCGCG-CCGAA----GTCTCGC-------------------------------GGTGCCCC--------------------------------------ACTGGGCCTCCCGTC---CAGCGCAACACTCTGG-GTT??????????????????????????????????????????????????????????????????? [837] Tuber_malacodermum_JT32319_Spain ???????????????????????????????????????????????????????????????????????????????????????????????????????????CATTA---------------------------------------TGCATCT-----------AGGGGA------------------------TACCAA-------------TGAG-----TTCCCTGAAGTGAAA----GCCCTCCA--------------TGTGTACCA-ATCCA---TGTTGCTTTCC-CAGGTTGTTGGTCACGGGTCGCCAGCCATCGCTCAA-TGGTGTCCACTGGTTGAGTGCATC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGAGGCTAAAGTGCTCCGTAGAATCCGTTCCTTCAGTTACTCGGTTGAAAAACGCCGCCATTTAGTCCGTAGGGATCCCCGTGAGCACCTGGGAGAGGG----CC----------TATCCAAAT-----------CGATTATTTTTGATC---AGC----TGTC---TGAGTT--GG----CC--AAGTGCCAT-ATTCTTTGA------ACAAG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGCATTCCTTGGGGCATGCCTGTTCGAGCGTCAC-TA--CA--AACCCCT----TCATAA--TATTA-----TGGTATTGATGGAT-GTG----A-ACTGTGGCAACCAG-------------TGTCCCTGGATCACCCT-GTCGAAATGTATG-GGCAGGACA----ATCAAC--CTCTAC--AATAGACTTAGT-A-------------------ACTGTTCCA-AAGAC------------AAGAGACAGTCCCTT-GCAGG----GTTGTGG----CCT-----------CGCCTCCAT----GGACCTCC??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? [890] Tuber_melanosporum_GB200_Italy ???????????????????????????????????????????????????????????????????????????????????????????????????GCGGAGGTCATTA---------------------------------------TGAATGCT----------TTGGGA------------------------TACCGT-----------------TGTGTATTCCCGAACACA------AACCTCTC--------------TGCGTATCA-CTCCA---TGTTGCTTCCA-CAGGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAGTGACCATGCTGGCACCTGTGGGAGAT----CT----------CTATGTTAA--------------CGGAGTATTTGATTGTGC----TGTC---TGAGCT--GG----CC--ATGTGTCAG-----ATTTA-----GTAAAG-TAAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAGGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCAC-TA--CA--CACCTTA----TCACAA-AGTTTG-----TGGTCTTGGCAGGA-GTG----A-ATTGCTAGTCTATCAAAATG-------TTCCAGCTGTACACTCT-GCTAAAAATTATG-AGAAGGTTA-----CCAGG-CATGAAC--GACGGACTTTATAA-------------------ACGGTTATA--AGAC------------CTGGATCAGTCACAA-GTCTT----GTCTGGT----CCT-----------TACCTTAA-----GGACCCCC-------ATCCTAG-ATG---------AACTATG----GGTTGACCTCGAATCAGGGAGGGATACCCGCTGA-ACTTAAGCATATC????????????????????????????????????????????????????????? [746] Tuber_multimaculatum_OSC62169_Spain_paratype ???????????????????????????????????????????????????????????????????????????????????????????????????????????CATTA----------------------------------------ATATAT-----------TTGGGA------------------------TACCCT----------------TACAGGTTCCCTATCCTTTA-----AACCTCTC--------------TGTGTACCA-ATCCA---TGTTGCTTTCCTCAGAT---------------------CAGCAGCCAC-TGCTGCCTGTATAGTTCACAATGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTAATATACAGAGGTATCTGGGGGAGGG----TC----------TTCTTATAA-------------CTCATATTGTTAACCATGC----AGTC---TGAGTT--GG----CT--GAATACCATACATATCTTG-----AATAAG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGTATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCTCAGGGCATGCCTGTTCGAGCGTCAC-TA--CA--AACCTCAC---TCACAA-CAATTG-----TGGTAATGGTAGGA-GTG----G-ATTATTATGACAAA-------------GTCACCAGTCACACCCT-ACCGAAATGCATT-GGGCGGACT----TTTAGG--CTTAGT-GAAGAGACTTAGT-A-------------------CATGTTCAA-AGAAT------------ATATAATAGTCTCAT-GCTAG----GTTAGGT----CCT-----------GCCTGCCT-----GGACCTCC-------ATCTGGT-TTA---------TATACTG----GGTTGACCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATC????????????????????????????????????????????????????????? [782] Tuber_panniferum_JT12835_Spain ???????????????????????????????????????????????????????????????????????????????????????AGGTGAACCTGCGGARGGRTCATTA---------------------------------------AACAAGC-----------TTGGGA------------------------CCCCGG-------------AAAGGYGGSCTCCCTGCGCGTCAA----ACCACATC--------------TGCGTACAC-TGCCA---TGTTGCTTCCC-CAGGC---------------------CGGCGACCGC-GCTCGCCCGTCAGCGTGGCGCTAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGCCTCGCCTCGTCGGAGGTGCCTGGGGGTGGG----GGTCGG------TACCCTCAT-----------CAAGTTTAACCACTGTTTGACCGTCAGTC---CGACCA--GG--------TGGAGCCGCGAGGCCACCGACTCGAAATAG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAGGTAATGTGAATTGCAGAACTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGCACTCCTCAGGGCTTGCCTGTCCGAGCGTCAG-TG--CA--AACCCGC----TCACGGAAGTCCG-----TGGTTCTGACGGAG-GTGGAACGTGTTGGGCTCGCC---------------GCCCGGCCGGCCACCCCAGTCCAAATCAATG-GGGCGGAGG------AAGCGTGGCATC--GCCCGACTTGGT-A-------------------GACGTCTTGATAAGC------------GTATGACAGTCGGAA-GC-------GGTCAAC-------------------------------GGTCCCGC-----------------------------------------CCGCCACGCGTCAGTTGTGGC-----------GCCTTGGCATCTTCATCAGGTTT??????????????????????????????????????????????? [764] Tuber_pseudoexcavatum_CJ408_China ???????????????????????????????????????????????????????????????????????????????????????????????????????????CATTA---------------------------------------TTGATAT-----------CTGGGA------------------------TATCTT-----------------TACAGATTCCCAATTACA------AACCTCTC--------------TGGTTATTA-GTCCA---TGTTGCTTTCA-CAAGT---------------------TAAGAGACAT-TCTTGCTTGCCAGTTGTAGCTGTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTCATACTTGGGTAGCAGATCATTACATTGTAACCAATTCATGTATGCTACTACTGCTTGCGCTTTAGTACTATACAGGCACTTGTGAAAGGT----CT------------------------------CAACTAAGCTTTAAATTATGT----GGTC---TGACTT--GG----CC--AAGTGCCAT-ATCTCT----------TAAG-TGAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATATTGCGCCCTTTGGCATTCCTTAGGGCATGCCTGCTCGAGCGTCAC-AG--AA--AACCCCA----TCACAG-TTCCTG-----TGGTCTTGGTATGA-GTG----G-GTTGATAGTATGTGGAGA---------CATGCTTATAACACTCT-ACTGAAATTTATA-GACAGGATA-----CCGGA-TATGGGC--AATAGACTTTGT-A-------------------AATATCCAC-AGGAT------------ATATATCAGTCATGT-GTCAT----GTTTGGT--------------------CCTGATATTATGGACTCCT-------ATTCTAT-ACA---------AACATTG----GGTTGACCTCGAATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATC????????????????????????????????????????????????????????? [834] Tuber_regimontanum_ITCV909_Mexico_holotype ???????????????????????????????????????????????????????????????????????????????????????????????????????????CATTA---------------------------------------TGATGCT-----------TTGGGA------------------------TACCAT-------------TATGG----GTTCCTGATCACAA-----AACCTCTC--------------TGCGTATCA-ATCCA---TGTTGCTTCCA-CAGGT---------------------CAAGAGAAAT-TCCTCCTCGACTTGTTTAGCTTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACCTTTCGTCATGGCTATGCAAGCACCTGTGGTAGAT----CT----------CAATTTCAA-----------CCAAGTATTTGATCA---TGC----TGTC---TGACCT--GG----CC--ATGTGTCAG-ATTTATT---------TAAG-TGAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAGGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTCGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCAC-TG--CA--CACCTTA----TCACAA-AATTTG-----TGGTCTTGGTAGGA-GTG----A-ATTACTGGTCCATGAAAATG-------TTCCAGTTGTACACCTT-GCTGAAATTTATA-GGAAGCTTA-----CCAGG-CATGAAT--AACAGACTTTGTAA-------------------ACGGCCATA--GGAC------------CTGAATCAGTCACAA-GTCAT----GCCAGGT----CCT-----------TACC-----TTAAGGATCCCC-------ATCCTAT-ATG---------AACTATG----GGTTGACCTCGAATCAGGTAGGG?????????????????????????????????????????????????????????????????????????????????? [789] Tuber_rufum_GB213_Italy ???????????????????????????????????????????????????????????????????????????????????????????????????????????CATTA---------------------------------------TACATAC-----------AGGGGA------------------------CGTTTT-------------AGCG-----TTCCCGGACCCAA------ACCCTCTC--------------TGTGTACAA-ATCCA---TGTTGCTTTCC-CAGGT------------------GGTTGGTGGCAGC-AGCTGTCCAACTCTGCCTGTATAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTACCTCTTTGGATGAACTATGCAGGCCCCTGGGAGAGGG----CC----------TATCCTGAG---------------CCAATTATTGAATTAGC----TGTC---TGAGTT--GG----CC--CAGTGCCAT-TTTCTTTAA------ACAAG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCTTGGGGCATGCCTGTTTGAGCGTCAC-TG--CA--AACCCGC----TCATAA-ATATTA-----TGGTTGTGATGGAA-GTG----A-ACTGAGGCTATCAG-------------TATGCCTGGGTCACCCT-GTCGAAATTCATA-GGCAGGACA----ATTAAC--CACTGC--AATGGACTTAGT-A-------------------ACTGTTTCA-AAGAC------------ATCAACCAGTCCCTT-GCTAG----GTGCTGG----CCT-----------GGCCTCCAT----GGACCTCC-------ATCCAAG-ATA---------AACTCTG----GGTTGACCTCGGATC?????????????????????????????????????????????????????????????????????????????????????????? [790] Tuber_shearii_JT12498_North_Carolina ??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????TGGG-----------------------------------------------------TTCCCAAAACAAA------CACATTCA--------------TGTGTATCC-TCCCA---TGTTGCTTTCC-CAAGC---------------------CAGTGGCCAC-TGCTACCAGCCAGTCCATTATTTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCTTCAGGTTGAGGTGCTTGGGAAAGGG----TCATTTAACAAACTTTATA-----------------------------TTAACCTATTGTC---TGATGA--GG----CT--ATATGCCAT-AATATGTAA------ACATG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCAC-----AAACAATCTGA----TCACCA-TATGTG-----TGGTATTGGCAGAA-GTG----G----------------ATATAGTCATGAGTTTCAGACTCCACTCC-GCTGGAATAAATA-GGCTGGAAA----AGTAGA-TCATAGC--AACAGACTTTCA-G-------------------AGTATTTTG-GAATA------------CTAAATTAGTTTAGA-GCAGA----TCAGAAT----CCA-----------GGCCAGT------TGACCCCC-------ATCCTGT-GTA--------------------------------ATGCAGTAAGGTTG??????????????????????????????????????????????????????????????????????????????? [792] Tuber_shearii_OSC51052_North_Carolina ????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????GGA------------------------TGCTCT---------------ATATGGGTTCCCAAAACAAA------CACATTCA--------------TGTGTATCC-TCCCA---TGTTGCTTTCC-CAAGC---------------------CAGTGGCCAC-TGCTACCAGCCAGTCCATTATTTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCTTCAGGTTGAGGTGCTTGGGAAAGGG----TCATTTAACAAACTTTATATT-----------------------------AACCTATTGTC---TGATGA--GG----CT--ATATGCCAT-AATATGTAA------ACATG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCAC-----AAACAATCTGA----TCACCA-TATGTG-----TGGTATTGGCAGAA-GTGGATATAGTCATGA--------------------GTTTCAGACTCCACTCC-GCTGGAATAAATA-GGCTGGAAA----AGTAGA-TCATAGC--AACAGACTTTCA-G-------------------AGTATTTTG-GAATA------------CTAAATTAGTTTAGA-GCAGA----TCAGAAT----CCA-----------GGCCAGTT------GACCCCC-------ATCCTGTG------------TAATGCAGTAAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATC????????????????????????????????????????????????????????? [826] Tuber_sphaerosporum_JT12487_Oregon ?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????TTGGGC------------------------------------------------------TCCCAAGCAAA------CACATCCA--------------TGTGTACTC-TCCCA---TGTTGCTTCCC-CAGAC---------------------CAGTGGCCAC-TGCTGCCAGCCCAGTTCCCTAATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTTTCTGGCCTGAGGTGTCTGGGGAAGGG----CTCAATATCAAACCTTCAAAC------------------------TAATTAGT----TGTC---TGACAA--GG----CC--ATGTGCCGT-AATCTTTAA-----AACATA-TTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTCGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCAC-TA--AA--AACCTTC----TCACAT-ATAATG-----TGGTATTGGTAGAA-GTG----A-ATAGTACTACTA---------------GTGCTTTGTCTTACTCT-ACTGAAATGAATA-GGCCAGAAA----AGCGGA-CCATGGT--AATAGACTCTCA-G-------------------AGTGTTTTA-AAATG------------CTAAATTAGTCTC---GCCAT----GGTTGAT---ATCT-----------GAGCCATT-----GGACCCCC---------------------------------------ATTTAGTCCAAACCAGAGAG???????????????????????????????????????????????????????????????????????????????????? [795] Tuber_sphaerosporum_JT19772_Oregon ?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????TCGGAT------------------------CTCCCA-----------------TCGGGGCTCCCAAGCAAA------CACATCCA--------------TGTGTACTC-TCCCA---TGTTGCTTCCC-CAGAC---------------------CAGTGGCCAC-TGCTGCCAGCCCAGTTCCCTAATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTTTCTGGCCTGAGGTGTCTGGGGAAGGG----CTCAATATCAAACCTTCAAAC------------------------TAATTAGT----TGTC---TGACAA--GG----CC--ATGTGCCGT-AATCTTTAA-----AACATA-TTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTCGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCAC-TA--AA--AACCATC----TCACAT-ATAATG-----TGGTATTGGTAGAA-GTG----A-ATAGTACTACTA---------------GTGCTTTGTCTTACTCT-ACTGAAATGAATA-GGCCAGAAA----AGCGGA-CCATGGT--AATAGACTCTCA-G-------------------AGTGTTTTA-AAATG------------CTAAATTAGTCTC---GCCAT----GGTTGAT-------------------ATCTGAGTCATTGGACCCCC-------ATTTAGTC------------CAAACTAGAGAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATC????????????????????????????????????????????????????????? [827] Tuber_sp_JT13224_West_Virginia ????????????????????????????????????????????????????????????????????GT?GTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTA---------------------------------------TTCATAT-----------ATGGGA------------------------CATACA-------------AGTG-----TTTCCTGACCCAA------ATCCTCTT--------------TGTGTACTT-ATCCA---TGTTGCTTTCC-CAGGT-------------------------GGTTGG-TTTTACTAGTTGTTTAACCCTTCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTAGTTGAGTTAACTTTACTATGTAGGCTCCTGGGAGAGGG----CC----------TATTTCAAG---------------CAAACTATTAAATCAGT----TGTC---TGAGTT--GG----CC--TAGTGTCAT-ATCTTTTTA-----AATAAA-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGTATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCTTGGGGCATGCCTGTTCGAGCGTCAC-TA--CA--AACCCAC----TCATAA-ATATTA-----TGGTAATGGTGGAT-GTG----A-AAGGAGGCTACTAG-------------TATGTCTCAGTCACCCC-ATTGAAATACATA-GGCAGGACA----ATTATC--TTTAGC--AAAGGACTTAGT-A-------------------ACTGTTATG-AAAAC------------ATATATTAGTTTCTT-GCTAG----GATTTGG----ACT-----------GACTTCTAT----GGATCTCC-------ATTAAAG-ATA---------AATTCTG----GGTTGACCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATC????????????????????????????????????????????????????????? [785] Tuber_sp_ITCV910_Mexico ?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????GTGTTCCTAGTTCTC------ATCCTCCC--------------TGTGTACCA-ATCCG---TGTTGCTTTCC-CAGTT--------GGGTTGGTATGAGCTGTGGTTCAACTTTACCTGCTTAGCCCTGTCAAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGAGGTGTTAAAGTCACTACTTTGCTCTTAGTATCTTCCTGAAAGAATGTGCTTTCAAAGTTGCAGGCTACATTCAGAGCAAGTGCTATGTGGGACCACTGGGAAAGG----TT----------TTACTTAAA------------------GCTGATTATAAAATTGAATGTC---TGAGAT--GG----CT--TATGGCTATGTACTTTTGA------ATAAG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCACCCCTTGGTATTCCTTGGGGCATGCCTGTTCGAGCGTCAC-TA--CA--AACCCTA----TCATAA-ATATTA-----TGGTACTGATGGAA-GTG----A-ATCATGGCTATTAA-------------TGCTTCTGGTCCACTCT-GTTGAAATGCATA-GGCAGGACA----ATCAAC--CTCTAC--AGCAGACTTAGT-A-------------------ATTGTTTTA-AAATC------------ACAAATCAGTCATGT-ACCA?----GTTTGGG----CCT-----------GTCCTCTTT----GGA???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? [984] Tuber_sp_JT32567_Mexico ??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????TGGGA------------------------TACCAA-------------AGTG-----TTCCCTAACTTGA------ACCCTCTC--------------?GTGTATCA-ATCCA---CGTTGCTTTCC-CGGGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTAGGCCTTCCAGGCTTCCGGGAAAGGT----CCCGTAGAAATCTATTGATTA-------------------------AATTGGC----TGTC---TGAGTT--GG----CC--CAGGGCCAT-AATCTTTGA------AAATG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGTATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCTTGGGGCATGCCTGTTCGAGCGTCAC-TG--CA--AACCCGC----TCATAG-CTATTA-----TGGTATTGATGGAA-GTG----A-ACTGTGGCAACTGA-------------TGCGCACTGTTTACCCT-ATCGAAATGCATA-GGCAGGAAG-----ATGAA-CTTCCGT--ACAGGACTTGGT-A-------------------ATTGTTTTT-AAGAC------------ATAAATTAGTCCCTT-GCGGT----GTTCTGA----CCT-----------AGCCTCCAA----GGACCTCC-------ATCCAAG-ACA---------AACAGAG----GGTTGACCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATC????????????????????????????????????????????????????????? [790] Tuber_sp_JT8755_Florida ??????????????????????????????????????????????????????????????????????????????????????????????????????GCTC??ATGA-------------------------------------------------------------------------------------------------------------------GCTCTCAAATAAA------CACATTCA--------------TGTGTATAC-TTCCA---TGTTGCTTTCC-CAGGC---------------------CAGTGGCCAC-TGCCACCAGCCAGTCCATTATTCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCTTCAGGTTGAGGTGCTTGGGAAAGGG----CCAATTATCAAACTTCTTTAT--------------------------ATTAACCTATTGTC---TGATGA--GG----CT--ATATGCCGT-AATATGTAA------ATATG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCAT-----AAACAATCTGA----TCACCA-TATGTG-----TGGTATTGGCAGAA-GTG----G----------------ATATAGTCAAGAGTATTGGACTCCACTCT-GCTGGAATGAATA-GGCTGGAAA----AGTAGA-TCATAGC--AATAGACTTTCA-G-------------------AGTATCTTA-GAATG------------CTAAATTAGTTTGGA-GCTGA----TCAGAAC----CCA-----------GGCCAGTT------GACCCTT-------ATCCTGT------------------------------------GTAAAGCAG-----------------TAAGAATG??????????????????????????????????????????????????????????? [713] Tuber_sp_RH8270753_Iowa ????????????????????????????????????????????????????????????????????????????????????????????????????????????ATTA---------------------------------------TGCATAA-----------ATGGGA------------------------TACCGA-------------AGCG-----TTCCCTGACTCAA------ACCCTCCC--------------TGTGTATCA-ACCCA---TGTTGCTTTCC-CAGTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCAGTCTTTTCAGGCCGCTGGGAGAGGT----CC-----------CATAGAAA-----------TCTATTGATCGAATT---GGC----TGTC---TGAGTT--GG----CC--CAGTGCCAT-ATTCTTTGA------AAATG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGTATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCACCCCTTGGTATTCCTTGGGGCATGCCTGTTCGAGCGTCAC-TG--CA--AACCCGC----TCATAA-CCATTA-----TGGTGTTGATGGAA-GTG----A-TCTGTAGCAACCAC-------------TGCTTACTGTTCACCCC-ATTGAAATGCATA-GGCAGGATA-----ATGAA-CCTCCTC--ACTGGACTTGGT-A-------------------ACTGTTTTA-GAAAC------------ATAAATTAGTCCCTT-GTGGT----GTTCTGG----CCT-----------GGCCTTCAA----AGACCCCC-------ATTCAAG-GCG---------AATATAG----GGTTGACCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATC????????????????????????????????????????????????????????? [740] Tuber_sp_TB10248_New_York ??????????????????????????????????????????????????????????????????????????????????????????????????????????????TA---------------------------------------TGCATAA-----------ATGGGA------------------------TACCAA-------------AGCG-----TTCCCTGACTCAA------ACCCTTCC--------------TGCGTATCA-ACCCA---TGTTGCTTTCC-CAGTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCAGTCCTTTCAGGCCGCTGGGAGAGGT----CCCATAGAAATCTATTGATCA-------------------------AATTGGC----TGTC---TGAGTT--GG----CC--CAGTGCCAT-ATTCTTTGA------AAATG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCGTATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCACCCCTTGGTATTCCTTGGGGCATGCCTGTTCGAGCGTCAC-TG--CA--AACCCGC----TCATAA-CCATTA-----TGGTGTTGATGGAA-GTG----A-TCTGTAGCAACCAC-------------TGCTTACTGTTCACCCC-ATCGAAATGCATA-GGCAGGATA-----ATGAA-CCTCCTC--ACTGGACTTGGT-A-------------------ACTGTTTTC-GAGAC------------ATAAATTAGTCCCTT-GTGGT----GTTCTGG----CCT-----------GGCCTTCAA----AGACCCCC-------ATTCAAG-GCG---------AATACAG----GGTTGACCTCGGATCAGGTAGGGATACCCGCTGA-ACTTAAGCATATC????????????????????????????????????????????????????????? [740] Tuber_spinoreticulatum_U188_Maryland_isotype ??????????????????????????????????????????????????????????????GTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTA---------------------------------------TACATAT-----------GTGGAA------------------------CTCCAA-------------GTGGGTTC?GACACCATGTT--------AACCTC----------------TGTGTACCG-AGCCA---TGTTGCTTTCC-CAGGC---------------------TACCTACTGT-TGGTATCCACCTGCTCTTCCCTGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGGTTGAGCTGTGTGGGTTTCCTGGGAAAGG----TA----------TAATATAAA-------------TGCTAATTGTTGAACAAGC----TGTC---TGAGGA--GG----CC--CAGTGCCGC-ATATTTTGA------ATAAG-TTAAAACTTTCAACAACGGATCTCTTGGCTCTCACATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATcGAATCTTTGAACGCACATTGCGCCTCTTGGTATTCCTTGAGGCATGCCTGTTCGAGCGTCAC-----AATTACCCCTG----TCACGG-ATCTCG-----TGGTGTTGATGGTA-GTG----G-ATTCCAGTCACTGATG-----------TGTGGCTATACTACTCC-AT?GAAATGAATA-GGGAGGACT----ACTGGC--CTCAGC--AATGGACTTAGT-A-------------------AATGTTTTC-AGAAT------------GTAAACCAGTCTTGT-GCCAG----GTCTGGT----CCG-----------GTC?TACT-----GGATCCCG------CATCCAAC-ATG---------TATTCT-----GGGTGACCT???????????????????????????????????????????????????????????????????????????????????????????????? [782] ; END; BEGIN ASSUMPTIONS; OPTIONS DEFTYPE=unord PolyTcount=MINSTEPS ; EXSET * UNTITLED = 1-286 303-713 725-742 746-764 929-948 955-966 985-1029 1058-1079 1090-1139 1150-1201 1210-1352; END; BEGIN CODONS; CODONPOSSET * CodonPositions = N: 1-1352; CODESET * UNTITLED = Universal: all ; END; Begin trees; [Treefile saved Sunday, January 23, 2011 12:24 AM] [! >Data file = NoHell_ITS_Dec6_ML > >Processing TREES block from file "NoHell_ITS_Dec6_test.tre": > Keeping: trees from file (replacing any trees already in memory) > 17 trees read from file ] Translate 1 Underwoodia_singeri_mes161_Chile, 2 Underwoodia_beatonii_JT28375_Australia, 3 Underwoodia_beatonii_JT28380_Australia, 4 Gymnohydnotrya_echinulata_clar4529, 5 Gymnohydnotrya_australiana_OSC130601, 6 L_C02_EcM_Salix_humboldtiana_Argentina, 7 R8M8_7x_EcM_Nothofagus_alpina_Argentina, 8 Dingleya_JT31575_Australia, 9 Nothojafnia_cf_thaxterii_N10_Argentina, 10 Labyrinthomyces_JT27750_Australia, 11 Reddellomyces_JT27723_Australia, 12 Leppia_JT28813_Australia, 13 Leppia_holotype_Australia, 14 Reddellomyces_JT27724_Australia, 15 Reddellomyces_JT4985_Australia, 16 Reddellomyces_JT6873_Australia, 17 P5M4_5a_EcM_Nothofagus_obliqua_Argentina, 18 L_C04_EcM_Salix_humboldtiana_Argentina, 19 Choiromyces_meandriformis_DL_Oregon, 20 Choiromyces_alveolatus_97, 21 Choiromyces_alveolatus_HS2886, 22 Choiromyces_meandriformis_RH691_Iowa, 23 Tuber_aestivum_JT30500_Sweden, 24 Tuber_mesentericum_CW105_Sweden, 25 Tuber_aestivum_AF516786_Europe, 26 Tuber_aestivum_China_GQ217542, 27 Tuber_gennadii_BM667_Spain, 28 Tuber_gennadii_JT9627_Spain_paratype, 29 Tuber_gennadii_M1904_Italy, 30 Tuber_anniae_JT13209_Washington_holotype, 31 Tuber_borchii_GB14_Italy, 32 Tuber_borchii_GB1_Italy, 33 Tuber_anniae_JT22695_Oregon, 34 Tuber_asa_M1828_Italy, 35 Tuber_sp_JT28121_Japan, 36 Tuber_sp8_K228_Japan, 37 Tuber_sp9_K214_Japan, 38 Tuber_beyeleri_JT32597_Oregon, 39 Tuber_canaliculatum_JT28215_New_Jersey, 40 Tuber_canaliculatum_OSC59072_West_Virginia, 41 Tuber_bellisporum_JT11679_Oregon_holotype, 42 Tuber_bellisporum_JT7270_Oregon_paratype, 43 Tuber_castellanoi_JT19924_California_paratype, 44 Tuber_castellanoi_JT28069_California_holotype, 45 Tuber_gibbosum_JT26632_Washington, 46 Tuber_gibbosum_JT30580_Oregon, 47 Tuber_oregonense_JT30493_Oregon_paratype, 48 Tuber_oregonense_GB284_Oregon_holotype, 49 Tuber_oregonense_JT27985_Oregon_paratype, 50 Tuber_liaotongense_OSC87602_China, 51 Tuber_sancarloensis_ITCV181_Mexico_holotype, 52 Tuber_sancarloensis_ITCV885_Mexico, 53 Tuber_JT9769_Nepal, 54 Tuber_sp_ITCV884_Mexico, 55 Tuber_sp_ITCV908_Mexico, 56 Tuber_brumale_GB21_Italy, 57 Tuber_brumale_GB22_Italy, 58 Tuber_californicum_JT28058_California, 59 Tuber_cf_borchii_China, 60 Tuber_dryophilum_GB35_Italy, 61 Tuber_dryophilum_GB37_Italy, 62 Tuber_excavatum_BM100_Spain, 63 Tuber_excavatum_China_GQ217540, 64 Tuber_excavatum_OSC80639_Italy, 65 Tuber_nitidum_BM105_Spain, 66 Tuber_ferrugineum_MA2721_Italy, 67 Tuber_fulgens_M2435_Italy, 68 Tuber_indicum_A_GB236_China, 69 Tuber_indicum_A_GB240_China, 70 Tuber_indicum_B_GB237_China, 71 Tuber_indicum_B_JT29410_Oregon, 72 Tuber_lyonii_GA21_Georgia, 73 Tuber_lyonii_OSC58244_Texas, 74 Tuber_magnatum_GB12_Italy, 75 Tuber_magnatum_GB13_Italy, 76 Tuber_magnatum_JT19460_Italy, 77 Tuber_sp_RH73_Iowa, 78 Tuber_sp1_K201_Japan, 79 Tuber_sp2_K215_Japan, 80 Tuber_sp14_K186_Japan, 81 Tuber_macrosporum_JT13362_Italy, 82 Tuber_malacodermum_JT32319_Spain, 83 Tuber_melanosporum_GB200_Italy, 84 Tuber_multimaculatum_OSC62169_Spain_paratype, 85 Tuber_panniferum_JT12835_Spain, 86 Tuber_pseudoexcavatum_CJ408_China, 87 Tuber_regimontanum_ITCV909_Mexico_holotype, 88 Tuber_rufum_GB213_Italy, 89 Tuber_shearii_JT12498_North_Carolina, 90 Tuber_shearii_OSC51052_North_Carolina, 91 Tuber_sphaerosporum_JT12487_Oregon, 92 Tuber_sphaerosporum_JT19772_Oregon, 93 Tuber_sp_JT13224_West_Virginia, 94 Tuber_sp_ITCV910_Mexico, 95 Tuber_sp_JT32567_Mexico, 96 Tuber_sp_JT8755_Florida, 97 Tuber_sp_RH8270753_Iowa, 98 Tuber_sp_TB10248_New_York, 99 Tuber_spinoreticulatum_U188_Maryland_isotype ; tree PAUP_1 = [&R] (((((1:0.03423078,17:0.06087081):0.02334289,5:0.01860139):0.02471048,(2:0.00000001,3:0.00000001):0.01449343):0.00468178,4:0.00752408):0.03993220,((((((((((((6:0.00000001,7:0.00000001):0.08932388,((18:0.03848879,(60:0.00790696,61:0.00000001):0.00787275):0.00000001,(91:0.00000001,92:0.00000001):0.01524402):0.00387466,58:0.02298642):0.00438148,34:0.03860826):0.00377151,(59:0.00524648,80:0.02293902):0.00970621):0.00590956,((30:0.00000001,33:0.00000001):0.01221670,(31:0.00399861,32:0.00000001):0.00740331):0.01553219):0.01862869,(((38:0.01947094,53:0.01752899):0.01407481,(51:0.00000001,52:0.01142596):0.03293735):0.01685240,((89:0.00000001,90:0.00000001):0.01322142,96:0.02310669):0.01544255):0.01354612,((((41:0.00000001,42:0.00377661):0.00379334,(43:0.00377125,44:0.00000092):0.01908031):0.00374284,(45:0.00378715,46:0.00000001):0.00764885):0.01509385,(47:0.00000001,48:0.00000001,49:0.00000001):0.01174598):0.08218333):0.02157971,84:0.06738232):0.00818570,(((35:0.00000001,36:0.00000001):0.07302471,37:0.06172668):0.03432181,(((56:0.00642598,57:0.00000001):0.07104923,(((((68:0.00376792,69:0.00000001):0.01550900,(70:0.00000001,71:0.00377020):0.01262252):0.00543172,83:0.01751797):0.02982601,87:0.01745004):0.01767802,86:0.05969876):0.00628881):0.01381715,77:0.03690114):0.00797201):0.02649628):0.00632016,((((((50:0.01547850,(((54:0.00000001,55:0.00000001,73:0.02682581):0.00413806,(72:0.00460863,99:0.05126174):0.01439273):0.02998722,66:0.02624114):0.00477553):0.00846525,(93:0.04266372,(95:0.02180060,(97:0.00377194,98:0.00000001):0.02239338):0.01791968):0.01218531):0.00374266,65:0.01660264):0.00637042,88:0.02051800):0.00457237,82:0.03212874):0.01460220,94:0.02803264):0.02416967):0.01660110,(((62:0.02990864,64:0.01975160):0.00500136,67:0.03801687):0.00498508,63:0.02291643):0.03308937):0.02342664,(((((((23:0.00000001,25:0.00000001):0.00390125,26:0.01504121):0.02195555,24:0.02484370):0.03142675,85:0.04937583):0.03647034,((74:0.00000001,75:0.00000001):0.00380257,76:0.00374789):0.06833747):0.03258427,(((39:0.00000001,40:0.00000001):0.04539968,(79:0.01200507,81:0.02248796):0.00488367):0.01225819,78:0.01526365):0.03722764):0.01803707,((27:0.00000001,28:0.00000001):0.01925600,29:0.02727816):0.03429992):0.02146647):0.02155680,(((((((8:0.00000001,13:0.00000001):0.00206140,12:0.00180782):0.00772836,((10:0.00000001,15:0.00000001):0.00375153,11:0.00000001):0.01494397):0.00370364,9:0.02691129,(14:0.00379442,16:0.00371667):0.01901622):0.06298531,(20:0.00000001,21:0.00000001):0.01264947):0.01067087,19:0.00000001):0.00772592,22:0.01117274):0.00972283):0.00998305):0; End; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 1155; END; BEGIN MacClade; Version 4.0 84; LastModified -920381701; FileSettings editor '0' '0' '1' '1'; Singles 000; Editor 0001100111111110010001001 '1' '12' Geneva '10' '260' '1' all; EditorPosition '44' '6' '723' '1099'; TreeWindowPosition '46' '6' '739' '1102'; ListWindow Characters closed Geneva '9' '50' '10' '273' '406' 000; ListWindow Taxa closed Geneva '9' '50' '10' '276' '490' 100000; ListWindow Trees closed Geneva '9' '50' '10' '276' '490' ; ListWindow TypeSets closed Geneva '9' '50' '10' '276' '490' ; ListWindow WtSets closed Geneva '9' '50' '10' '276' '490' ; ListWindow ExSets closed Geneva '9' '50' '10' '276' '490' ; ListWindow CharSets closed Geneva '9' '50' '10' '276' '490' ; ListWindow TaxSets closed Geneva '9' '50' '10' '276' '490' ; ListWindow CharPartitions closed Geneva '9' '50' '10' '276' '490' ; ListWindow CharPartNames closed Geneva '9' '50' '10' '276' '490' ; ListWindow WtSets closed Geneva '9' '50' '10' '276' '490' ; ChartWindowPosition '52' '30' '686' '964'; StateNamesSymbols closed Geneva '9' '10' '50' '30' '148' '220'; WindowOrder Data; OtherSymbols &/ 00 ?-; Correlation '0' '0' '1000' '0' '0' 10011010; Salmo 00000001; EditorFile '4'; ExportHTML _ MOSS '100' 110000; PrettyPrint 10; EditorToolsPosition '130' '651' '169' '111'; TreeWindowProgram 10; TreeWindow 0000; Continuous '0' '3' 1; Calculations 0000001; SummaryMode '0' '0' 0; Charts Geneva '9' (normal) 0010; NexusOptions '0' '0' '50' 001001011; TipLabel '1'; TreeFont Geneva '9' (normal); TreeShape 1.0 1.0 0100; TraceLabels 0101; ChartColors '0' '0' '65535' '9' '0' 1; ChartBiggestSpot 1; ChartPercent 10; ChartBarWidth '10' 1; ChartVerticalAxis 10101; ChartMinMax '0'; TraceAllChangesDisplay '1' 1; BarsOnBranchesDisplay '0' '0' '60000' '10000' '10000' '10000' '10000' '60000' '65000' '65000' '65000' '6' '1' 0000101; ContinuousBranchLabels 0; AllStatesBranchLabels 1; IndexNotation '2' 1; PrintTree 10.00 '2' '2' '2' '2' '2' '2' '2' '2' '2' '2' '2' Geneva '9' (normal) Geneva '10' (normal) Geneva '9' (normal) Geneva '9' (normal) Geneva '9' (bold ) Geneva '9' (normal) Geneva '9' (normal) '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '1' '1' '1' '1' '0' '-4637' '-39' '4' '-40' '0' '1' '2' '1' '8' '0' '0' '0' '2' 1000111000000000000100000111000; MatchChar 00 .; EntryInterpretation 01; ColorOptions 00; TreeTools '0' '5' '4' '0' '10' '4' '0' 00100111111101110; EditorTools '0' '0' '0' '1000' '0' '0' '4' '5' '0' 110010101110111; PairAlign '2' '2' '3' '2' '1' '1' '2' '1' '3' 1011; BothTools '1'; END; BEGIN MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1291688772306; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 6009489103695640072; tell It; setDefaultOrder 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 25 23 24 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103; attachments ; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 6230950255032888636; checksumv 0 2 3719376619 null getNumChars 1352 numChars 1352 getNumTaxa 99 numTaxa 99 short true bits 3458764513820540943 states 15 sumSquaresStatesOnly 1240051.0 sumSquares -5.810724383218509E20 NumFiles 1 NumMatrices 1; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1126 672; setLocation 42 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #6230950255032888636 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1026 605; setLocation 42 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; endTell; setActive; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; colorCells #mesquite.charMatrices.ColorByState.ColorByState; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; END;