#NEXUS [written Thu Oct 25 13:14:42 BST 2012 by Mesquite version 2.72 (build 527) at Salvi-PC/192.168.6.233] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=22; TAXLABELS Flexopecten_glaber_1 Flexopecten_flexuosus Pecten_jacobaeus_1 Pecten_jacobaeus_2 Pecten_maximus_1 Pecten_maximus_2 Pecten_keppelianus_1 Pecten_keppelianus_2 Pecten_novaezelandiae Amusium_pleuronectes Manupecten_pesfelis_1 Manupecten_pesfelis_2 Semipallium_fulvicostata Azumapecten_farreri Mizuhopecten_yessoensis Talochlamys_multistriata Talochlamys_pusio Mimachlamys_varia_1 Mimachlamys_varia_2 Aequipecten_opercularis_1 Mimachlamys_nobilis Spondylus_gaederopous ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=665; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Flexopecten_glaber_1 CGCCTG-TTTATCAAAAACATGG-CCTTTTGCGT-TCATAAAAGGTCG-GTCCTTCCC-GGTGA-TTT----ATTTAAACGGATGCGGTAAAGCGTGCTAAGGTAGCTAAGTTA-TGGTCTTTTAATTTTAGGCCCT----------GTGAAAGGATTGACGAGCTTGAGTCTGTCTCTATCT---AAATTTTATGAAATTGAATTTTAAGTGCAAATGCTTAAGTGGACATGAAAGACGAGAAGACCCCGTGAAGTT-------------GTAGCGGGAGC----------------------------------------------------------------------------------------AGGAAAGCTCCTT-----------CTTTT-GCTGGGGCAGCAAAAGAGCTAGGTTAGACTCTTTTTTCTT---TTAGGTTGGTGA----AAGACCCA------TT--AA---GTGAGTATCAGAAGAAGTTACTCCGGGGATAACA-GCGTAATTTATCTTGATA-GTTCTTATAGATGGGTAAGTTTGCGACCTCGATGTTGGCTCTGGATATCCTGAGGC-TGTAGTCGGTCTCGA-CGGTTGG-TATGTT-CGCCCA--TTAAAATCCTACGTGATCTGAGTTCAGA-CCGG Flexopecten_flexuosus CGCCTG-TTTATCAAAAACATGG-CCTTTTGAGT-TCATAAAAGGTCG-GTCCTTCCC-GGTGA-TTT----GTTTAAACGGATGCGGTAAAGCGTGCTAAGGTAGCTAAGTTA-TGGTCTTTTAATTTTAGGCCCT----------GTGAAAGGATTGACGAGCTTGAGTCTGTCTCTACCT---AAATTTTATGAAATTGAATTTTAAGTGCAAATGCTTAAGTGGACATGAAAGACGAGAAGACCCCGTGAAGTT-------------GTAGCGGGAGC----------------------------------------------------------------------------------------AGGAAAGCTCCTT-----------CTTTT-GCTGGGGCAGCAAAAGAGCTAGGTTAGACTCTTTTTTATT---TTAGGTTGGTGA----AAGACCCA------TT--AA---GTGAGTATCAGAAGAAGTTACTCCGGGGATAACA-GCGTAATTTATCTTGATA-GTTCTTATAGATGGGTAAGTTTGCGACCTCGATGTTGGCTCTGGATATCCTGAGGC-TGTAGTCGGTCTCGA-CGGTTGG-TATGTT-CGCCCA--TTAAAATCCTACGTGATCTGAGTTCAGA-CCGG Pecten_jacobaeus_1 CGCCTG-TTTATCAAAAACATGG-CTCCCTGAGCAATATGGGGGGTCG-TGCCTTCCC-GGTGAGCTTGCGGGCTTAAACGGACGCGGTAAAGCGTGCTAAGGTAGCTAAATTA-TGGCCTATTAATTGTAGGTCCT----------GTGAATGGTTTGACGAGTTTCCAACTGTCTCTAGTT---TTTTTTGGTGAACTTGAATTGGATGTGCAAATGCTTCCATGGGTAAGAAAGACGAGAAGACCCCGTGAAGTTAGAAATTTAAGTTATTGGGAAGTTCCAAGGCTA----------TTTGTAGCCGAATCGTT--GAGGAGC-ACTAGAACTTAGTGT------------------------TTCAGAAGGGGTGAATAATA----GCAGTTTTGGCTGGGGCAGCAAAGGAGCAAAGCTAGACTCCTTTAGGGT---GTAAAACAGATGTGTTACGACCCACAAACATT--AAGGTGTGATTATCAGAAGAAGTTACTCCGGGGATAACA-GCGTAATCTGTCTTGATA-GTTCTTATAGATGGGCGGGTTTGCGACCTCGATGTTGGCTCTGGATATCCTAAGGCTTGTAGGCGGTCTTGA-GGGTTGG-TTCGTT-CGCCCA--TAAAAATCTGACGTGATCTGAGTTCAGA-CCGG Pecten_jacobaeus_2 CGCCTG-TTTATCAAAAACATGG-CTCCCTGAGCAATATGGGGGGTCG-TGCCTTCCC-GGTGAGCTTGCGGGCTTAAACGGACGCGGTAAAGCGTGCTAAGGTAGCTAAATTA-TGGCCTATTAATTGTAGGTCCT----------GTGAATGGTTTGACGAGTTTCCAACTGTCTCTAGTT---TTTTTTGGTGAACTTGAATTGGATGTGCAAATGCTTCCATGGGTAAGAAAGACGAGAAGACCCCGTGAAGTTAGAAATTTAAGTTATTGGGAAGTTCCAAGGCTA----------TTTGTAGCCGAATCGTT--GAGGAGC-ACTAGAACTTAGTGT------------------------TTCAGAAGGGGTGAATAATA----GCAGTTTTGGCTGGGGCAGCAAAGGAGCAAAGCTAGACTCCTTTAGGGT---GTAAAACAGATGTGTTACGACCCACAAACATT--AAGGTGTGATTATCAGAAGAAGTTACTCCGGGGATAACA-GCGTAATCTGTCTTGATA-GTTCTTATAGATGGGCGGGTTTGCGACCTCGATGTTGGCTCTGGATATCCTAAGGCTTGTAGGCGGTCTTGA-GGGTTGG-TTCGTT-CGCCCA--TAAAAATCTGACGTGATCTGAGTTCAGA-CCGG Pecten_maximus_1 CGCCTG-TTTATCAAAAACATGG-CTCCCTGAGCAATATGGGGGGTCG-TGCCTTCCC-GGTGAGCTTGCGGGCTTAAACGGACGCGGTAAAGCGTGCTAAGGTAGCTAAATTA-TGGCCTATTAATTGTAGGTCCT----------GTGAATGGTTTGACGAGTTTCCAACTGTCTCTAGTT---TTTTTTGGTGAACTTGAATTGGATGTGCAAATGCTTCCATGGGTAAGAAAGACGAGAAGACCCCGTGAAGTTAGAAATTTAAGTTATTGGGAAGTTCCAAGGCTA----------TTTGTAGCCGAATCGTT--GAGGAGC-ACTAGAACTTAGTGT------------------------TTCAGAAGGGGTGAATAATA----GCAGTTTTGGCTGGGGCAGCAAAGGAGCAAAGCTAGACTCCTTTAGGGT---GTAAAACAGATGTGTTACGACCCACAAACATT--AAGGTGTGATTATCAGAAGAAGTTACTCCGGGGATAACA-GCGTAATCTGTCTTGATA-GTTCTTATAGATGGGCGGGTTTGCGACCTCGATGTTGGCTCTGGATATCCTAAGGCTTGTAGGCGGTCTTGA-GGGTTGG-TTCGTT-CGCCCA--TAAAAATCTGACGTGATCTGAGTTCAGA-CCGG Pecten_maximus_2 CGCCTG-TTTATCAAAAACATGG-CTCCCTGAGCAATATGGGGGGTCG-TGCCTTCCC-GGTGAGCTTGCGGGCTTAAACGGACGCGGTAAAGCGTGCTAAGGTAGCTAAATTA-TGGCCTATTAATTGTAGGTCCT----------GTGAATGGTTTGACGAGTTTCCAACTGTCTCTAGTT---TTTTTTGGTGAACTTGAATTGGATGTGCAAATGCTTCCATGGGTAAGAAAGACGAGAAGACCCCGTGAAGTTAGAAATTTAAGTTATTGGGAAGTTCCAAGGCTA----------TTTGTAGCCGAATCGTT--GAGGAGC-ACTAGAACTTAGTGT------------------------TTCAGAAGGGGTGAATAATA----GCAGTTTTGGCTGGGGCAGCAAAGGAGCAAAGCTAGACTCCTTTAGGGT---GTAAAACAGATGTGTTACGACCCACAAACATT--AAGGTGTGATTATCAGAAGAAGTTACTCCGGGGATAACA-GCGTAATCTGTCTTGATA-GTTCTTATAGATGGGCGGGTTTGCGACCTCGATGTTGGCTCTGGATATCCTAAGGCTTGTAGGCGGTCTTGA-GGGTTGG-TTCGTT-CGCCCA--TAAAAATCTGACGTGATCTGAGTTCAGA-CCGG Pecten_keppelianus_1 CGCCTG-TTTATCAAAAACATGG-CTCCCTGAGCAATATGGGGGGTCG-TGCCTTCCC-GGTGAGCTTGCGAGCTTAAACGGACGCGGTAAAGCGTGCTAAGGTAGCTAAATTA-TGGCCTATTAATTGTAGGTCCT----------GTGAATGGTTTGACGAGTTTCCAACTGTCTCTAGTT---TTTTTTGGTGAACTTGAATTGGATGTGCAAATGCTTCCATGGGTAAGAAAGACGAGAAGACCCCGTGAAGTTAGAAATTTAAGTTATTGGGAAGTTCCAAAGCTAA---------TTTGTAGCTGAATCGTT--GAGGAGC-ACTA-TATTTAGTGT------------------------TTCAGAAGGGATGAATAATA----GCAGTTTTGGCTGGGGCAGCAAAGGAGCAAAGCTAGACTCCTTTAGGGT---GTAGAACAGATGTGTTACGACCCACAAACATT--AAGGTGTGATTATCAGAAGAAGTTACTCCGGGGATAACA-GCGTAATCTGTCTTGATA-GTTCTTATAGATGGGCGGGTTTGCGACCTCGATGTTGGCTCTGGATATCCTAAGGCTTGTAGGCGGTCTTGA-GGGTTGG-TTCGTT-CGCCCA--TAAAAATCTGACGTGATCTGAGTTCAGA-CCGG Pecten_keppelianus_2 CGCCTG-TTTATCAAAAACATGG-CTCCCTGAGCAATATGGGGGGTCG-TGCCTTCCC-GGTGAGCTTGCGAGCTTAAACGGACGCGGTAAAGCGTGCTAAGGTAGCTAAATTA-TGGCCTATTAATTGTAGGTCCT----------GTGAATGGTTTGACGAGTTTCCAACTGTCTCTAGTT---TTTTTTGGTGAACTTGAATTGGATGTGCAAATGCTTCCATGGGTAAGAAAGACGAGAAGACCCCGTGAAGTTAGAAATTTAAGTTATTGGGAAGTTCCAAAGCTAA---------TTTGTAGCTGAATCGTT--GAGGAGC-ACTA-TATTTAGTGT------------------------TTCAGAAGGGATGAATAATA----GCAGTTTTGGCTGGGGCAGCAAAGGAGCAAAGCTAGACTCCTTTAGGGT---GTAGAACAGATGTGTTACGACCCACAAACATT--AAGGTGTGATTATCAGAAGAAGTTACTCCGGGGATAACA-GCGTAATCTGTCTTGATA-GTTCTTATAGATGGGCGGGTTTGCGACCTCGATGTTGGCTCTGGATATCCTAAGGCTTGTAGGCGGTCTTGA-GGGTTGG-TTCGTT-CGCCCA--TAAAAATCTGACGTGATCTGAGTTCAGA-CCGG Pecten_novaezelandiae CGCCTG-TTTATCAAAAACATGG-CTCCCTGAGCAATATGGGGGGTCG-TGCCTTCCC-GGTGAGCTTGTGGGCTTAAACGGACGCGGTAAAGCGTGCTAAGGTAGCTAAATTA-TGGCCTATTAATTGTAGGTCCT----------GTGAATGGTTTGACGAGTTTCCAACTGTCTCTAGTT---TTTTTTGGTGAACTTGAATTGGATGTGCAAATGCTTCCATGGGTAAGAAAGACGAGAAGACCCCGTGAAGTTAGAAATTTAAGTTATTGGGAAGTTCCAAGGCTAA---------TTTGTGGCCGAATCGTT--GAGGAGC-ACTATAATCTAGTGT------------------------TTTAGAAGGGGTGAATAATA----GCAGTTTTGGCTGGGGCAGCAAAGGAGCAAAGCTAGACTCCTTTAGGGT---ATAAAACAGATGTGTTACGACCCACAAACATT--AAGGTGTGATTATCAGAAGAAGTTACTCCGGGGATAACA-GCGTAATCTGTCTTGATA-GTTCTTATAGATGGGCGGGTTTGCGACCTCGATGTTGGCTCTGGATATCCTAAGGCTTGCAGGCGGTCTTGA-GGGTTGG-TTCGTTTCGCCCA--TAAAAATCTGACGTGATCTGAGTTCAGA-CCGG Amusium_pleuronectes CGCCTG-TTTATCAAAAACATGG-CTCCTTGAATATCATGAGGGGTCG-TGCCTTCCC-GGTGAGCTTGCGAGCTTAAACGGACGCGGTAAAGCGTGCTAAGGTAGCTAAATTA-TGGCCTATTAATTGTAGGTCCT----------GTGAATGGTTTGACGAGTTTCCAACTGTCTCTAATT---TTTTTTGGTGAACTTGAATTGGATGTGCAAATGCTTCCATGGGTAAGAAAGACGAGAAGACCCCGTGAAGTTAGAAATTTTAGCTATTGAGGCCTTTT--AACTA------------TGAAGTTAAGT-GTT--AAAGG----TTA-TACTTT---------------------------------GTTAGGTGAATAGTG----ACAGTTTTGGCTGGGGCAGCAAAAGAGCAAAGTTAGACTCTTTTAGTTTT--ATGTGACTGGTGTGTTACGACCCACAAATTTT--AGGGTGTGATTATCAGAAGAAGTTACTCCGGGGATAACA-GCGTAATCTGTCCTGACA-GTTCTTATAGATGGGCGGGTTTGCGACCTCGATGTTGGCTCTGGATATCCTAAGGCTTGTAGGCGGTCTTTA-GGGTTGG-TTCGTT-CGCCCA--TGAAAATCCAACGTGATCTGAGTTCAGA-CCGG Manupecten_pesfelis_1 CGCCTG-TTTATCAAAAACATGG-CTTTCTGAGAAACATGGGGGGTCG-TGCCTTCCC-AGTGGGTATACGAGCCTAAACGGACGCGGTAAATCGTGCTAAGGTAGCTAAATTA-TGGCCTATTAATTGTAGGTCCT----------GTGAATGGTTTGACGAGTCTTCGTCTGTCTCAAGGT---TATTTTAGTGAACTTGAATTAAATGTGCAAATGCATTTATAGGTGAGAAAGACGAGAAGACCCCGTGAAGTTAGAAATTTTTACTGTAGCGTAACCCCTTAATATATA----ATATTTGTCGCTTAATCATT--GACTACCTAATACTACTTAGTGCTGGTGTAGTGGG---GGTTGAGGGATAAGCAGAGGAGTGCAGTT--AATAGGTTTTGGCTGGGGCAGCAAAAAGGCAAATCTAGACCTTTTTAGTTT----ATTAACGGGTGCGTTATGATCCACATAAGAGGGTAAATGTGCATAGCAGAAGAAGTTACTCCGGGGATAACA-GCGTTATCCACCCTGACA-GTTCTTATAGATGGGTGGGTTTGCGACCTCGATGTTGGCTCTGGGTATCCTGAGGC-TGTAGGCGGTCTCGA-AGGTTGG-TTTGTT-CGCCCA-TTAAAACCC-GACGTGATCTGAGTTCAGA-CCGG Manupecten_pesfelis_2 CGCCTG-TTTATCAAAAACATGG-CTTTCTGAGAAACATGGGGGGTCG-TGCCTTCCC-AGTGGGTATACGAGCCTAAACGGACGCGGTAAATCGTGCTAAGGTAGCTAAATTA-TGGCCTATTAATTGTAGGTCCT----------GTGAATGGTTTGACGAGTCTTCGTCTGTCTCAAGGT---TATTTTAGTGAACTTGAATTAAATGTGCAAATGCATTTATAGGTGAGAAAGACGAGAAGACCCCGTGAAGTTAGAAATTTTTACTGTAGCGTAACCCCTTAATATATA----ATATTTGTCGCTTAATCATT--GACTACCTAATACTATTTAGTGCTGGTGTAGCGGG---GGTTGAGGGATAAGCAGAGGAGTGCAGTT--AATAGGTTTTGGCTGGGGCAGCAAAAAGGCAAATCTAGACCTTTTTAGTTT----ATTAACGGGTGCGTTATGATCCACATAAGAGGGTAAATGTGCATAGCAGAAGAAGTTACTCCGGGGATAACA-GCGTTATCCACCCTGACA-GTTCTTATAGATGGGTGGGTTTGCGACCTCGATGTTGGCTCTGGGTATCCTGAGGC-TGTAGGCGGTCTCGA-AGGTTGG-TTTGTT-CGCCCA-TTAAAACCC-GACGTGATCTGAGTTCAGA-CCGG Semipallium_fulvicostata CGCCTG-TTTATCAAAAACATGG-CTTTCTGAAAAACATAGAGGGTCG-TGCCTTCCC-AGTGGGTATACGAGCCTAAACGGACGCGGTAAATCGTGCTAAGGTAGCTAAATTA-TGGCCTATTAATTGTAGGTCCT----------GTGAATGGTTTGACGAGTCTTCATCTGTCTCAAAGT---TATTTTGGTGAACTTGAATTAAATGTGCAAATGCATTTATGGGGAAGAAAGACGAGAAGACCCCGTGAAGTTAGAAATTTTTAATATAATGTAAAGTCTTGATGATCG----GGGATTATTGTTATTTTACTA-GAAGGTTTACTATTACTCAG-GAGAAGGTAGTAGG-CAAGCTGGTGGGAGAGTTGAGAAATATAGTT--AATAGGTTTTGGCTGGGGCAGCAAAGAGGCAAAGCTAGACCTCTTTAGTCT----ATTGACGGGTGCGTTACGATCCACATGGTTGGTCAGATGTGCTTAGCAGAAGAAGTTACTCCGGGGATAACA-GCGTTATCCATCCTGATA-GCTCTTATAGATGGGTGGGTTTGCGACCTCGATGTTGGCTCTGGGTATCCTGAGGC-TGTAGGTGGTCTCAA-GGGTTGGGTTTGTT-CGCCCA-TTAAAACCC-GACGTGATCTGAGTTCAGA-CCGG Azumapecten_farreri CGCCTGGTTTATCAAAAACATGG-CTTTCTGAAGAGCATGGGGGGTCG-TGCCTTCCCCAGTGGGCATACGAGCCTAAACGGACGCGGTTTATCGTGCTAAGGTAGCTAAATTA-TGGCCTATTAATTGTAGGTCCT----------GTGAATGGTTTGACGAGTCCTCGACTGTCTCGAGGT---TGTTTTGGTGAACTTGAATTGAATGTGCAAATGCTTTCATGGGAAAGAAAGACGAGAAGACCCCGTGAAGTTAGAAATTCCTATTACAGCGTTAATCCGCTTTGATGTTTGTAGATCAGGCGTTTTAGAACTTTAATTTTCCAATACGGCTAGAGTTAGGGGTATTGGATGTTTATAGTTTTTAAGTAGGGGAGTGTGGTTTTGATGAGTTTTGGCTGGGGCAGCAAAGAGGCAAAACTAGACCTCTTTAGACA----CACAACGGGTGCGTTACGACCCACAAAA-ATGAATTGTGTGATTAGCAGAATGAGTTACTCCGGGGATAACAGCCGTAATCTTCCTTGATAAGTTCTTATAGATGGGCGGGTTTGCGACCTCGATGTTGGCTCTGGGTATCCTGAGGCTTGCAGGCGGTCTCAAAGGGTTGG-TTCGTT-CGCCCAATTAAAACCTTGACGTGATCTGAGTTCAAAACCGG Mizuhopecten_yessoensis CGCCTG-TTTATCAAAAACATGG-CTTTCTGACTAACATGGGGGGTCG-TGCCTTCCC-GGTGGGTATACGAGCCTAAACGGACGCGGTAAATCGTGCTAAGGTAGCTAAATTA-TGGCCCATTAATTGTGGGTCCT----------GTGAATGGTTTGACGAGTCCTCTACTGTCTCAAGGT---TGTTTTGGTGAACTTGAATTGAATGTGCAAATGCTTTCATACGAAAGAAAGACGAGAAGACCCCGTGAAGTTAGAAATTCCTATTACAGCGTAAACCCACATTGAC-----TGTGTCAG-CGTTAAAGAGC--AGATAGGGCTTTGGATCTTTTTTTGAAGGTCCCGGC--TTTATGGCTTTTGAGCAGCGGAATGTAGTTTTGACGAGTTTTGGCTGGGGCAGCAAAGAGGCAAAACTAGACCTTTTTAATCA----CTAAACGGATACGTTACGACCCACAAAACATGAAAATCGTGATTAACAGAAGGAGTTACTCCGGGGATAACATGCGTAATCTTCCTTGATA-GTTCTTATAGATGGGCGGGTTTGCGACCTCGATGTTGGCTCTGGGTATCCTGAGGCATGCAGGCGGTCTCAA-GGGTTGG-TTCGTT-CGCCCA-TTAAAACCC-GACGTGATCTGAGTTCAGA-CCGG Talochlamys_multistriata CGCCTG-TTTATCAAAAACATGG-CCTCTTGAGAAACATGGGGGGTCG-TGCCTTCCC-GGTGGGTACAAGAGCCTAAACGGACGCGGTAAATCGTGCTAAGGTAGCTAAATTA-TGGCCTATTAATTGTAGGTCCT----------GTGAATGGTTTGACGAGTCCTCTACTGTCTCAAGGT---TGTTTTGGTGAACTTGAATGGAACGTGCAAATGCTTTCATGAGAGAGAAAGACGAGAAGACCCCGTGAAGTTAGAAATTCCCGCTATAACGAGAAGTCCCTCTTA--------------ATGT-A----------ATTAAT-TGTAAG-----------------------------------TCGTGGGGAAATATGGTT--GGTGAGTTTTAGCTGGGGCAGCTAAGGGGCAAGCCTAGACCCCTTTTATCT----TTAAACGGGTGCGTTACGATCCACAGAA-ATGAATGTTGTGATTAGCAGAAGGAGTTACTCCGGGGATAACA-GCGTAGTCCGCCTTGATA-GTTCGTATAGATGGGCGGGTTCGCGACCTCGATGTTGGCTCTGGATATCCTGAAGCTTGCAGGCGGTTTCAA-GGGTTGG-TTCGTT-CGCCCA-TTAAAATCC-AACGTGATCTGAGTTCAGA-CCGG Talochlamys_pusio CGCCTG-TTTATCAAAAACATGG-CCGCTTGAGAAACATGGGGGGTCT-GGCCTTCCC-GGTGGGTACAAGAGCCTAAACGGACGCGGTAAATCGTGCTAAGGTAGCTAAATTA-TGGCCTATTAATTGTAGGTCCT----------GTGAATGGTTTGACGAGTCCTCTACTGTCTCAAGGT---TGTTTTGGTGAACTTGAATGGAACGTGCAAATGCTTTCATGAGAGAGAAAGACGAGAAGACCCCGTGAAGTTAGAAATTCCCGCTATAACGAGAAGTCCCTCTTA--------------ATGTGA----------ATTAAT-TGTAAG-----------------------------------TCGTGGGGAAATATGGTT--GGTGAGTTTTAGCTGGGGCAGCTAAGGGGCAAGCCTAGACCCCTTTTATCT----TTAAACGGGTGCGTCACGATCCACAGAA-ATGAATGTTGTGATTAGCAGAAGGAGTTACTCCGGGGATAACA-GCGTAGTCCGCCTTGATA-GTTCGTATAGATGGGCGGGTTCGCGACCTCGATGTTGGCTCTGGATATCCTGAAGCTTGCAGGCGGTTTCAA-GGGTTGG-TTCGTT-CGCCCA-TTAAAATCC-AACGTGATCTGAGTTCAGA-CCGG Mimachlamys_varia_1 CGCCTG-TTTATCAAAAACATGG-CTTTCTGAGAAACATGGGGGGTCG-TGCCTTCCC-AGTGGGTATACGAGCCTAAACGGACGCGGTAAATCGTGCTAAGGTAGCTAAATTA-TGGCCTATTAATTGTAGGTCCT----------GTGAATGGTTTGACGAGTCCCCTACTGTCTCGAGGT---TGTTTTGGTGAAATTGAATTGAACGTGCAAATGCTTTCATGGGGAAGAAAGACGAGAAGACCCCGTGAAGTTAGGAATGCCTGCCATAACGTAAAATCCCTATAAC-----------AGATGTTATTAGCA--ATATAAATATGCAAGGCTTGGGGTTCTTGTGTAGAA-----------TTGTCGTTGGGAAGAATGGTC--AGTGCGTTTTGGCTGGGGCAGCAAAGAGGCAAAACTAGCCCTCTTTATTCG----AAAAACGGATGCGTTACGACCCACAGGA-ATGTATGTTGTGACTAGCAGAATGAGTTACTCCGGGGATAACA-GCGTAGTCCGCCTCGATA-GTTCGTATAGACGGGCGGGTTCGCGACCTCGATGTTGGCTCTGGGTATCCTGAGGCTTGCAGGGGGTCTCAA-GGGTTGG-TTCGTT-CGCCCA-TTAAAACCC-GACGTGATCTGAGTTCAGA-CCGG Mimachlamys_varia_2 CGCCTG-TTTATCAAAAACATGG-CTTTCTGAGAAACATGGGGGGTCG-TGCCTTCCC-AGTGGGTATACGAGCCTAAACGGACGCGGTAAATCGTGCTAAGGTAGCTAAATTA-TGGCCTATTAATTGTAGGTCCT----------GTGAATGGTTTGACGAGTCCCCTACTGTCTCGAGGT---TGTTTTGGTGAAATTGAATTGAACGTGCAAATGCTTTCATGGGGAAGAAAGACGAGAAGACCCCGTGAAGTTAGGAATGCCTGCCATAACGTGAAATCCCTATAAC-----------AGATGTTATTAGCA--ATATAAATATGCAAGGCTTGGGGTTCTTGTGTAGAA-----------TTGTCGTTGGGAAGAATGGTC--AGTGCGTTTTGGCTGGGGCAGCAAAGAGGCAAAACTAGCCCTCTTTATTCG----AAAAACGGATGCGTTACGACCCACAGGA-ATGTATGTTGTGACTAGCAGAATGAGTTACTCCGGGGATAACA-GCGTAGTCCGCCTCGATA-GTTCGTATAGACGGGCGGGTTCGCGACCTCGATGTTGGCTCTGGGTATCCTGAGGCTTGCAGGGGGTCTCAA-GGGTTGG-TTCGTT-CGCCCA-TTAAAACCC-GACGTGATCTGAGTTCAGA-CCGG Aequipecten_opercularis_1 CGCCTG-TTTATCAAAAACATGG-CCTACTGTAT-TTATAGTAGGTCG-TTCCTTCCC-AGTGAGAT---GA-CTTAAACGGATGCGGTAAAGCGTGCTAAGGTAGCTAAATTA-TGGCCCTCTAATTGGGGGCCCT----------GTGAATGGATTGACGAGCCTATAACTGTCTCTAGCT---GAATTATATGAAATTGAATTTTAAGTGCAAATGCTTAAATATAAGTGATAGACGAGAAGACCCCGTGAAGTTGTTAACT----AAGTGGCA-GAAATTTCT-------------------------------------------TACCAC--------------------------------------------TTTTGTT-------GTT--GGCTGGGGCAGCAAAAGAGCAAGATCAGACTCTTTCTTTTC----TTTGTTTGATAG---ACGATCCACTTACTTT--ATTTAGTGATTAACAGAAGAAGTTACTCCGGGGATAACA-GCGTTATTTTCTTTGATA-GTTCTTATAGATGAGAAAGTTTGCGACCTCGATGTTGGCTCCGGATATCCTGAGGC-TGTAGGCGGTCTCAA-TGGTTGG-TATGTT-CGCCCA-TTAAAATCCTGACGTGATCTGAGTTCAGA-CCGG Mimachlamys_nobilis CGCCTG-TTTATCAAAAACATGGTCTTTTTGTGTACCATAAAAAGTCG-TGCCTTCCC-AGTGGGTTTT--AACCTAAACGGATGCGGTAAATCGTGCTAAGGTAGCTAAATTA-TGGCCCATTAATTGTGGGTCTT----------GCGAACGGCTTGACGAGTTCCCTACTGTCTCGAAGT---TGTTTTGGTGAACTTGAATTGGATGTGCAAATGCTTCCATGGGTGAGAAAGACGAGAAGACCCCGTGAAGTTAGAAATTTTTTATCTAGTATGAATTTTCAGTTT---------------TTTTTGAGTTTGCAGATGTAAGTTGAGATCTTGA-----------------------------GAGTTGAAAAATATGGTT--CTATTGTTTTGGCTGGGGCAGCAAGAAGGCAAAACTAGACCTTCTTTATTA----AAAAACGGGTGCGTTACGACCCATAGTT-TTGAAAGGAATGATTATCAGAAGAAGTTACTCCGGGGATATCA-GCGTTATCCGTCCTGATA-GTCCTTATAGATGGGCGGGTTTGCGACCTCGATGTTGGCTCTGGTTATCCTGAGGCTTGCAGGAGGTCTCGA-GGGTTGG-TTTGTT-CGCCCA--TAAAATCC-GACGTGATCTGAGTTCAGA-CCGG Spondylus_gaederopous CGCCTG-TTTATCAAAAACATGGTCTCCTCGGGAATCACGTGGAGTCGGTGATCTTCCCAGTGGGTGTACGCATTTAAACGGGGGCAAAGGCATGTCCAAAGGTAGCTAAATTACTGGACCAGTAATTCTGGTTCATACATTAAAAAGTGAAGGGGCTGACGAGTCTCTAACTGTCTCTATTTACGTACTCGTTGGAATTTTAGTTGGAAGTGCAAACGCTTTCTTGGGTGAGAAAGACGAGAAGACCCTATGAAGTT------------TATCTAGTGAACCCTGGG-----------------------------------------------------------------------GAGGGCTTCGTGCTCAGGCTATCTTGGG--GGTGGCTTTT-GCTGGGGCAGCAGGAGAGC-AGGTTAGACTCTACCGCTGACATAAAAAGCTGGTATGCT-CGATCCACTAAAGGTAAGGGGGCCGATCAGGAGAAAGAGTTACTCTAGGGATAACA-GCGTAATTTTGCCCATTGAGATCTTATCATTGGGCAAGGTTGCGACCTCGATGTTGGCTCTGGGTATCCATGAACTTGCAGGAGGTTCAAA-TGGTTGG-TTTGTT-CGCCCA-TTAAAACCTCGACGTGATCTGAGTTCAGA-CCGG ; options gapmode = newstate; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 665; END; BEGIN TREES; Title 'Trees from "16S_def_MP.tre"'; LINK Taxa = Taxa; TRANSLATE 1 Flexopecten_glaber_1, 2 Flexopecten_flexuosus, 3 Pecten_jacobaeus_1, 4 Pecten_jacobaeus_2, 5 Pecten_maximus_1, 6 Pecten_maximus_2, 7 Pecten_keppelianus_1, 8 Pecten_keppelianus_2, 9 Pecten_novaezelandiae, 10 Amusium_pleuronectes, 11 Manupecten_pesfelis_1, 12 Manupecten_pesfelis_2, 13 Semipallium_fulvicostata, 14 Azumapecten_farreri, 15 Mizuhopecten_yessoensis, 16 Talochlamys_multistriata, 17 Talochlamys_pusio, 18 Mimachlamys_varia_1, 19 Mimachlamys_varia_2, 20 Aequipecten_opercularis_1, 21 Mimachlamys_nobilis, 22 Spondylus_gaederopous; TREE PAUP_1 = (22:0.0,((20:115.0,(1:83.0,2:81.0):58.0):122.0,((10:29.0,((3:0.0,4:0.0,5:0.0,6:0.0,9:10.0):5.0,(7:0.0,8:0.0):4.0):41.0):35.0,(21:59.0,((((13:44.0,(11:0.0,12:2.0):42.0):47.0,(14:45.0,15:46.0):22.0):53.0,(18:0.0,19:1.0):32.0):38.0,(16:1.0,17:4.0):34.0):41.0):39.0):206.0):0.0); TREE PAUP_2 = (22:0.0,((20:115.0,(1:83.0,2:81.0):58.0):122.0,((10:29.0,((9:8.0,(3:0.0,4:0.0,5:0.0,6:0.0):2.0):5.0,(7:0.0,8:0.0):2.0):43.0):35.0,(21:59.0,((((13:44.0,(11:0.0,12:2.0):42.0):47.0,(14:45.0,15:46.0):22.0):53.0,(18:0.0,19:1.0):32.0):38.0,(16:1.0,17:4.0):34.0):41.0):39.0):206.0):0.0); END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 665; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 665; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1351167283088; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 3048765998750784931; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 2895230534169079510; checksumv 0 2 4094464308 null numChars 665 short true bits 15 states 15 sumSquaresStatesOnly 308422.0 NumFiles 1 NumMatrices 1; endTell; getWindow; tell It; suppress; setResourcesState false false 313; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1440 792; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #3048765998750784931 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #3048765998750784931; getWindow; tell It; newAssistant #mesquite.lists.DefaultTaxaOrder.DefaultTaxaOrder; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1127 725; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.ibeam; endTell; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #3048765998750784931 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 813.1351167240869.1529996557836496187; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1127 725; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.reroot; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 6; orientUp; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;