#NEXUS BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=24; TAXLABELS Muscodor_sp._6610CMSTITBRT Muscodor_albus_AF324336 'Muscodor sp. A3-5 AY034665' Muscodor_vitigenus_AY100022 Muscodor_albus_AY527045 Muscodor_albus_AY527046 Muscodor_albus_AY527048 Trichoderma_harzianum_AY605713 Muscodor_albus_AY927993 Muscodor_crispans_EU195297 fungal_endophyte_EU686979 fungal_endophyte_EU687035 fungal_endophyte_sp._P1813B_EU977197 fungal_endophyte_sp._P912B_EU977236 fungal_sp._ARIZ_B342_FJ612989 'Muscodor sp. WG-2009a FJ664551' Muscodor_yucatanensis_FJ917287 'fungal sp. ZH S13-1-2 GQ220337' Muscodor_cinnanomi_GQ848369 Muscodor_fengyangensis_HM034852 Muscodor_fengyangensis_HM034853 Muscodor_fengyangensis_HM034856 'Muscodor sp. SR-2011 JF938595' 'Muscodor sp. AB-2011 JN426991' ; END; BEGIN CHARACTERS; TITLE 6610CMSTITBRT_ITS_alingnment; DIMENSIONS NCHAR=632; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Muscodor_sp._6610CMSTITBRT GGGAGGCTACCCCATAGG------GGA-TACCACATAGTGGTTACCCGGTAGTCCCAGGTGCTAGATCGTGCTCAACGTCTTATGGTCTACGGG----CAGCTCCCCGG?GGCCCTCCCCGCCGGC-GGCCAACT--AAACTC?--------------------GTTTT-TATGGCATT?TGAA---------------TCATAAACTT------AATAAGTTAAAACTTTCAACAACGGATCT?TTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAACGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGCATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCACCACTTAAGCCCTGTTCC----T?AGCGTTGGGAGCCTACGGCACTGCCC------GTAGC--TCCTTAAAGTG-AT-GGCGGAGTTG-T----TCTCAC?TTAGGCCGGAGT------AAATC-ATCT---------?GCCTCTCTAATGGTT------CCGGCCCCC------------------------------------------------------------------------------- Muscodor_albus_AF324336 CGGAGGCTACCCTATAGG------GGA-TACCACATAGTGGTTACCCTGTAGTCCCAGGTGCTAGATCGTGCTCAACGTCTTATCGTCTACGAC----TAGCTACCCGGTGGCCCTCCCCGCCGGC-GGCCAACT--AAACTCT--------------------GTTTT-TATGGCATTCTGAA---------------TTATAAACTT------AATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGCATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCACCACTTAAGCCCTGTTGC----TTAGCGTTGGGAGCCTACGGCACTGCCC------GTAGC--TCCCTAAAGTG-ATTGGCGGAGTTGGT----TCTCACTCTAGGC-GTAGT------AAATCTATCT---------CGCCTCTGTAGTGGTT------CCGGCCCCT------------------------------------------------------------------------------- 'Muscodor sp. A3-5 AY034665' CGGAGGCTACCCTATAGG------GGA-TACCACATAGTGGTTACCCTGTAGTCCCAGATGCTAGATCGTGCTCAACGTCTTATCGTCTACGAC----TAGCTACCCGGTGGCCCTCCCCGCCGGC-GGCCAACT--AAACTCT--------------------GTTTT-TATGGCATTCTGAA---------------TTATAAACTT------AATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGCATTCTAGTGGGCATGCCTGTTCGAGCGTCATTT-ACCACTTAAGCCCTGTTGC----TTAGCGTTGGGAGCCTACGGCACTGCCC------GTAGC--TCCCTAAAGTG-ATTGGCGGAGTTGGT----TCTCACTCTAGGC-GTAGT------AAATCTATCT---------CGCCTCTGTAGTGGTT------CCGGCCCCT------------------------------------------------------------------------------- Muscodor_vitigenus_AY100022 CGGAGGCTACCCTGCGGG------AGAATACCACTTAGTGGTTACCCTGTAGTTTCAGGTAC------------------------------AT----CAGCTACCCGGTAGTCATCCCCGCCGGC-GGCCAACT--AAACTCT--------------------GTTTTCTTTGGAATTCTGAA---------------TAACAAACTT------AATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGCATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCACCACTTAAGCCTTGTTGC----TTAGCGTTGGGAGCCTACGGCACGGCCC------GTAGC--TCCTTAAAGTG-ATTGGCGGAGTTGGT----TCTCACTCTAAGC-GTAGT------AATTATATCT---------CGCTTCTGTAGTGGTC------CCGGCCCCT------------------------------------------------------------------------------- Muscodor_albus_AY527045 CGGAGGCTACCCTATAGG------GGA-TACCACATACTGGTTACCCTGTAGTCCCAGGTGCTAGATCGTGCTCAACGTCTTATCGTCTACGAC----TAGCTACCCGGTGGCCCTCCCCGCCGGC-GGCCAACT--AAACTCT--------------------GTTTT-TATGGCATTCTGAA---------------TTATAAACTT------AATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGTCCATTAGCATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCACCACTTAAGCCCTGTTGC----TTAGCGTTGGGAGCCTACGGCACTGCCC------GTAGC--TCCCTAAAGTG-ATTGGCGGAGTTGGT----TCTCACTCTAGGC-GTAGT------AAATCTATCT---------CGCCTCTGTAGTGGTT------CCGGCCCCT------------------------------------------------------------------------------- Muscodor_albus_AY527046 CGGAGGCTACCCTATAAG------GGA-TACCACATACTGGTTACCCTGTAGTCCCAGGTGCTAGATCGTGCTCAACGTCTTATCGTCTACGAC----TAGCTACCCGGTGGCCCTCCCCGCCGGC-GGCCAACT--AAACTCT--------------------GTTTT-TATGGCATTCTGAA---------------TTATAAACTT------AATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGCATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCACCACTTAAGCCCTGTTGC----TTAGCGTTGGGAGCCTACGGCACTGCCC------GTAGC--TCCCTAAAGTG-ATTGGCGGAGTTGGT----TCTCACTCTAGGC-GTAGT------AAATCTATCT---------CGCCTCTGTAGTGGTT------CCGGCCCCT------------------------------------------------------------------------------- Muscodor_albus_AY527048 CGGAGGCTACCCTATAGG------GGA-TACCACACACTGGTTACCCTGTAGTCCCAGGTGCTAGATCGTGCTCAACGTCTTATCGTCTACGAC----TAGCTACCCGGTGGCCCTCCCCGCCGGC-GGCCAACT--AAACTCT--------------------GTTTT-TATGGCATTCTGAA---------------TTATAAACTT------AATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGCATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCACCACTTAAGCCCTGTTGC----TTAGCGTTGGGAGCCTACGGCACTGCCC------GTAGC--TCCCTAAAGTG-ATTGGCGGAGTTGGT----TCTCACTCTAGGC-GTAGT------AAATCTATCT---------CGCCTCTGTAGTGGTT------CCGGCCCCT------------------------------------------------------------------------------- Trichoderma_harzianum_AY605713 --TTTACAACTCCCAAAC-----------CCAATGTGAACGTTACCAAACTGTTGCCTCGGCGGGAT----CTCTGCCCCGGGTGCGTCG--------CAGCC-CCGGACCAAGGCGCCCGCCGGRRGACCAACCTAAAACTCTTATTGTATACCCCCTCGCGGGTTTTTTTTTATAATCTGAGCCTTCTCGGCGCCTCTCGTAGGCGTTTCGAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAARAACGCAGCGAAATGCGATAAGTAATGTGAATTGCARAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCGAACCCCTCCGGGGGGTCGGCGTTGGGGATC---GGCCCTCCCTTAGCGGGTGGCCGTCTCCGAAATACAGKGGCGGTCTCGCCGCAGCCTCTC-CTGCGCAGTAGTTTGCMCACTCGCATCGGGAGCGCGGCGCGTCCACAGCCGTTAAACACCCAACTTCTGAAATGTTGACCYCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAYARAAAKWCCAAMCA Muscodor_albus_AY927993 CGGAGGCTACCCTATAGG------GGA-TACCACATAGTGGTTACCCTGTAGTCCCAGGTGCTAGATCGTGCTCAACGTCTTATCGTCTACGAC----TAGCTACCCGGTGGCCCTCCCCGCCGGC-GGCCAACT--AAACTCT--------------------GTTTT-TATGGCATTCTGAA---------------TTATAAACTT------AATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGCATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCACCACTTAAGCCCTGTTGC----TTAGCGTTGGGAGCCTACGGCACTGCCC------GTAGC--TCCCTAAAGTG-ATTGGCGGAGTTGGT----TCTCACTCTAGGC-GTAGT------AAATCTATCT---------CGCCTCTGTAGTGGTT------CCGGCCCCT------------------------------------------------------------------------------- Muscodor_crispans_EU195297 CGGAGGCTACCCTATAGG------GGA-TACCACATAGTGGTTACCCTGTAGTCCCAGGTGCTAGATCGTGCTCAACGTCTTATCGTCTACGAC----TAGCTACCCGGTGGCCCTCCCCGCCGGC-GGCCAACT--AAACTCT--------------------GTTTT-TATGGCATTCTGAA---------------TTATAAACTT------AATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGCATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCACCACTTAAGCCCTGTTGC----TTAGCGTTGGGAGCCTACGGCACTGCCC------GTAGC--TCCCTAAAGTG-ATTGGCGGAGTTGGT----TCTCACTCTAGGC-GTAGT------AAATCTATCT---------CGCCTCTGTAGTGGTT------CCGGCCCCT------------------------------------------------------------------------------- fungal_endophyte_EU686979 CGGAGGCTACCCTGCGGG------AGAATACCACTTAGTGGTTACCCTGTAGTTTCAGGTAC------------------------------AT----CAGCTACCCGGTAGTCATCCCCGCCGGC-GGCCAACT--AAACTCT--------------------GTTTTCTTTGGAATTCTGAA---------------TAACAAACTT------AATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGCATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCACCACTTAAGCCTTGTTGC----TTAGCGTTGGGAGCCTACGGCACGGCCC------GTAGC--TCCTTAAAGTG-ATTGGCGGAGTTGGT----TCTCACTCTAAGC-GTAGT------AATTATATCT---------CGCTTCTGTAGTGGTC------CCGGCCCCT------------------------------------------------------------------------------- fungal_endophyte_EU687035 CGGAGGCTACCCTGCGGG------GGATTACCACCTAGTGGTTACCCTGCAGTCTCAGGTAC------------------------------AT----CTGTTACCCGGTAGTCATCCCCGCCGGC-GGCCAACT--AAACTCT--------------------GTTTTCTTTGGAATTCTGAA---------------TCATAAACTT------AATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGCATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCACCACTTAAGCCCTGTTGC----TTAGCGTTGGGAGCCTACGGCATAGCCC------GTAGC--TCCTTAAAGTG-ATTGGCGGAGTTGGT----TCTCACTCTAAGC-GTAGT------AACTATATCT---------CGCTTCTGTAGTAGTT------CCGGCCCCT------------------------------------------------------------------------------- fungal_endophyte_sp._P1813B_EU977197 CGGAGGCTACCCTGCGGG------AGAATACCACTTAGTGGTTACCCTGTAGTTTCAGGTAC------------------------------AT----CAGCTACCCGGTAGTCATCCCCGCCGGC-GGCCAACT--AAACTCT--------------------GTTTTCTTTGGAATTCTGAA---------------TAACAAACTT------AATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGCATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCACCACTTAAGCCTTGTTGC----TTAGCGTTGGGAGCCTACGGCACGGCCC------GTAGC--TCCTTAAAGTG-ATTGGCGGAGTTGGT----TCTCACTCTAAGC-GTAGT------AATTATATCT---------CGCTTCTGTAGTGGTC------CCGGCCCCT------------------------------------------------------------------------------- fungal_endophyte_sp._P912B_EU977236 CGGAGGCTACCCTATAGG------GGA-TACCACATAGTGGTTACCCTGTAGTCCCAGGTGCTAGATCGTGCTCAACGTCTTATCGTCTACGAC----TAGCTACCCGGTGGCCCTCCCCGCCGGC-GGCCAACT--AAACTCT--------------------GTTTT-TATGGCATTCTGAA---------------TTATAAACTT------AATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGCATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCACCACTTAAGCCCTGTTGC----TTAGCGTTGGGAGCCTACGGCACTGCCC------GTAGC--TCCCTAAAGTG-ATTGGCGGAGTTGGT----TCTCACTCTAGGC-GTAGT------AAATCTATCT---------CGCCTCTGTAGTGGTT------CCGGCCCCT------------------------------------------------------------------------------- fungal_sp._ARIZ_B342_FJ612989 CGGAGGCTACCCTGCGGG------AGAATACCACTTAGTGGTTACCCTGTAGTTTCAGGTAC------------------------------AT----CAGCTACCCGGTAGTCATCCCCGCCGGC-GGCCAACT--AAACTCT--------------------GTTTTCTTTGGAATTCTGAA---------------TAACAAACTT------AATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGCATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCACCACTTAAGCCTTGTTGC----TTAGCGTTGGGAGCCTACGGCACGGCCC------GTAGC--TCCTTAAAGTG-ATTGGCGGAGTTGGT----TCTCACTCTAAGC-GTAGT------AATTATATCT---------CGCTTCTGTAGTGGTC------CCGGCCCCT------------------------------------------------------------------------------- 'Muscodor sp. WG-2009a FJ664551' CGGAGGCTACCCTGCGGG------GGATTACCACCTAGTGGTTACCCTGCAGTCTCAGGTAC------------------------------AT----CTGTTACCCGGTAGTCATCCCCGCCGGC-GGCCAACT--AAACTCT--------------------GTTTTCTTTGGAATTCTGAA---------------TCATAAACTT------AATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGCATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCACCACTTAAGCCCTGTTGC----TTAGCGTTGGGAGCCTACGGCATAGCCC------GTAGC--TCCTTAAAGTG-ATTGGCGGAGTTGGT----TCTCACTCTAAGC-GTAGT------AACTATATCT---------CGCTTCTGTAGTAGTT------CCGGCCCCT------------------------------------------------------------------------------- Muscodor_yucatanensis_FJ917287 CGGAGGCTACCCTGCGGG------GGATTACCACCTAGTGGTTACCCTGCAGTCTCAGGTAC------------------------------AT----CTGTTACCCGGTAGTCATCCCCGCCGGC-GGCCAACT--AAACTCT--------------------GTTTTCTTTGGAATTCTGAA---------------TCATAAACTT------AATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGCATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCACCACTTAAGCCCTGTTGC----TTAGCGTTGGGAGCCTACGGCATAGCCC------GTAGC--TCCTTAAAGTG-ATTGGCGGAGTTGGT----TCTCACTCTAAGC-GTAGT------AACTATATCT---------CGCTTCTGTAGTAGTT------CCGGCCCCT------------------------------------------------------------------------------- 'fungal sp. ZH S13-1-2 GQ220337' CGGAGGCTACCCTATAGG------GGA-TACCACATAGTGGTTACCCTGTAGTCCCAGGTGCTAGATCGTGCTCAACGTCTTATCGTCTACGAC----TAGCTACCCGGTGGCCCTCCCCGCCGGC-GGCCAACT--AAACTCT--------------------GTTTT-TATGGCATTCTGAA---------------TTATAAACTT------AATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGCATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCACCACTTAAGCCCTGTTGC----TTAGCGTTGGGAGCCTACGGCACTGCCC------GTAGC--TCCCTAAAGTG-ATTGGCGGAGTTGGT----TCTCACTCTAGGC-GTAGT------AAATCTATCT---------CGCCTCTGTAGTGGTT------CCGGCCCCT------------------------------------------------------------------------------- Muscodor_cinnanomi_GQ848369 CGGAGGCTACCCTATAGG------GGA-TACCACATAGTGGTTACCCTGTAGTCCCAGGTGCTAGATCGTGCTCAACGTCTTATCGTCTACGAC----TAGCTACCCGGTGGCCCTCCCCGCCGGC-GGCCAACT--AAACTCT--------------------GTTTT-TATGGCATTCTGAA---------------TTATAAACTT------AATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGCATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCACCACTTAAGCCCTGTTGC----TTAGCGTTGGGAGCCTACGGCACTGCCC------GTAGC--TCCCTAAAGTG-ATTGGCGGAGTTGGT----TCTCACTCTAGGC-GTAGT------AAATCTATCT---------CGCCTCTGTAGTGGTT------CCGGCCCCC------------------------------------------------------------------------------- Muscodor_fengyangensis_HM034852 AAGGCGCTACCCTGTAGTTACCCTGTAGTCCCAGGGAGCTGTCATCAGCTCTTTAGGGGAGCCCACA---GCCTGGCGACGTTTTCGTTACAGGGCTGTAGCT-CCGGACTGCCCTCCCCGCCGGC-GGCCAACT--AAACTCT--------------------GTTTTCTTTGGAACTCTGAA---------------TCATAAACTT------AATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGCATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCACCACTTAAGCCCTGTTGC----TTAGCGTTGGGGGCCTACGGCACAGCCT------GTAGC--CCCTTAAAGTG-ATTGGCGGAGTTGGT----TCTATCTCTAAGC-GTAGT------AATTTCTTCT---------CGCTTCTGCAGTAGTG------CTGGCCCCC------------------------------------------------------------------------------- Muscodor_fengyangensis_HM034853 AAGGCGCTACCCTGTAGTTACCCTGTAGTCCCAGGGAGCTGTCATCAGCTCTTTAGGGGAGCCCACA---GCCTAGCGACGTTTTCGTTACAGGGCTGTAGCT-CCGGACTGCCCTCCCCGCCGGC-GGCCAACT--AAACTCT--------------------GTTTTCTTTGGAACTCTGAA---------------TCATAAACTT------AATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGCATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCACCACTTAAGCCCTGTTGC----TTAGCGTTGGGGGCCTACGGCACAGCCT------GTAGC--CCCTTAAAGTG-ATTGGCGGAGTTGGT----TCTATCTCTAAGC-GTAGT------AATTTCTTCT---------CGCTTCTGCAGTAGTG------CTGGCCCCC------------------------------------------------------------------------------- Muscodor_fengyangensis_HM034856 AAGGCGCTACCCTGTAGTTACCCTGTAGTCCCAGGGAGCTGTCATCAGCTCTTTAGGGGAGCTCACA---GCCTAGCGATGTTTTCGTTACAGGGCTGTAGCT-CCGGACTGCCCTCCCCGCCGGC-GGCCAACT--AAACTCT--------------------GTTTTCTCTGAAACTCTGAA---------------TTATAAACTT------AATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGCATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCACCACTTAAGCCCTGTTGC----TTAGCGTTGGGGGCCTACGGCACAGCCT------GTAGC--CCTTTAAAGTG-ATTGGCGGAGTTAGT----TCTATCTCTAAGC-GTAGT------AATTTCTTCT---------CGCTTCTGCAGTAGTG------CTGGCCCCC------------------------------------------------------------------------------- 'Muscodor sp. SR-2011 JF938595' CGGAGGCTACCCTGCGGG------AGAATACCACTTAGTGGTTACCCTGTAGTTTCAGGTAC------------------------------AT----CAGCTACCCGGTAGTCATCCCCGCCGGC-GGCCAACT--AAACTCT--------------------GTTTTCTTTGGAATTCTGAA---------------TAACAAACTT------AATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGCATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCACCACTTAAGCCTTGTTGC----TTAGCGTTGGGAGCCTACGGCACGGCCC------GTAGC--TCCTTAAAGTG-ATTGGCGGAGTTGGT----TCTCACTCTAAGC-GTAGT------AATTATATCT---------CGCTTCTGTAGTGGTC------CCGGCCCCT------------------------------------------------------------------------------- 'Muscodor sp. AB-2011 JN426991' CGGAGGCTACCCTATAGG------GGA-TACCACATAGTGGTTACCCTGTAGTCCCAGGTGCTAGATCGTGCTCAACGTCTTATCGTCTACGAC----TAGCTACCCGGTGGCCCTCCCCGCCGGC-GGCCAACT--AAACTCT--------------------GTTTT-TATGGCATTCTGAA---------------TTATAAACTT------AATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGCATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCACCACTTAAGCCCTGTTGC----TTAGCGTTGGGAGCCTACGGCACTGCCC------GTAGC--TCCCTAAAGTG-ATTGGCGGAGTTGGT----TCTCACTCTAGGC-GTAGT------AAATCTATCT---------CGCCTCTGTAGTGGTT------CCGGCCCCT------------------------------------------------------------------------------- ; END; BEGIN TREES; Title 6610cmstitbrt_its; LINK Taxa = Taxa; TRANSLATE 1 Muscodor_sp._6610CMSTITBRT, 2 Muscodor_albus_AF324336, 3 'Muscodor sp. A3-5 AY034665', 4 Muscodor_vitigenus_AY100022, 5 Muscodor_albus_AY527045, 6 Muscodor_albus_AY527046, 7 Muscodor_albus_AY527048, 8 Trichoderma_harzianum_AY605713, 9 Muscodor_albus_AY927993, 10 Muscodor_crispans_EU195297, 11 fungal_endophyte_EU686979, 12 fungal_endophyte_EU687035, 13 fungal_endophyte_sp._P1813B_EU977197, 14 fungal_endophyte_sp._P912B_EU977236, 15 fungal_sp._ARIZ_B342_FJ612989, 16 'Muscodor sp. WG-2009a FJ664551', 17 Muscodor_yucatanensis_FJ917287, 18 'fungal sp. ZH S13-1-2 GQ220337', 19 Muscodor_cinnanomi_GQ848369, 20 Muscodor_fengyangensis_HM034852, 21 Muscodor_fengyangensis_HM034853, 22 Muscodor_fengyangensis_HM034856, 23 'Muscodor sp. SR-2011 JF938595', 24 'Muscodor sp. AB-2011 JN426991'; TREE tree1 = (8:0.163978155,((22:0.01244509,(20:0.00195103,21:2.0044E-4):0.00289345):0.07908742,(((12:0.0,(16:0.0,17:0.0):0.0):0.01799495,(4:0.0,(11:0.0,(13:0.0,(15:0.0,23:0.0):0.0):0.0):0.0):0.01815843):0.00286431,(1:0.02836626,(19:9.3828E-4,((6:0.00213726,(5:0.00221396,7:0.00217588):5.766E-5):0.00214396,(2:-1.72E-6,(9:-1.72E-6,(10:-2.29E-6,(14:-3.44E-6,(18:-5.5E-6,(3:0.00220312,24:-9.17E-6):5.5E-6):3.44E-6):2.29E-6):1.72E-6):1.72E-6):3.36E-5):0.0012189):0.00950961):0.03132331):0.04586876):0.163978155); END;