#NEXUS BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=15; TAXLABELS Fusarium_sp._22AMSTYEL_EF Fusarium_sp._7AMSTYEL_EF Fusarium_sp._9BAMSTYEL_EF Gibberella_zeae_DQ459738 Fusarium_equiseti_GQ505599 'Fusarium sp. FIESC_3b KOD-2010 GQ505602' 'Fusarium sp. FIESC_17a KOD-2010 GQ505613' Fusarium_sp._NRRL_34070_GQ505642 Fusarium_sp._NRRL_36318_GQ505646 Fusarium_sp._NRRL_36323_GQ505648 Fusarium_sp._NRRL_36548_GQ505655 'Fusarium incarnatum CS-2011 HM852057' 'Fusarium incarnatum MLST 3-b JF270235' Fusarium_sp._NRRL_52737_JF740814 Fusarium_sp._NRRL_52745_JF740821 ; END; BEGIN CHARACTERS; TITLE Fusarium_TEF_alinment; DIMENSIONS NCHAR=716; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Fusarium_sp._22AMSTYEL_EF -AGGACAAGACTCACCTTAACGTCGTCGTCATCGGCCACGTCGACTCTGGCAAGTCGACCACTGTGAGTACTACCCACGATGATCTGCTTATCAGTAGTGATCAACCCCGCC-AGATGTGGCGGGGTAAGTTCAACTTGGAATATTTGCTGACAAGATTGCATAGACCGGTCACTTGATCTACCAGTGCGGTGGTATCGACAAGCGAACCATCGAGAAGTTCGAGAAGGTTGGTTTCCATTTCCCTCGATCGCACGCCCTCTACCCAC-CGATCCATCAGTCGAATCAGTTAC----GACGATTGAATATGCGCCTGTTACCCCGCTCGAGTACAAAA-TCTTGCGGTTCAACCGTAATTTTTTTT----GGTGGGGTTTCAACCCCGCTACTCGAGCGACAGACGTTTGCCCTCTTCCCACAAACTCATTTCTTGTGC-------ATCACGTGTCCATCAGCCACTAACCACACGACAATAGGAAGCCGCCGAGCTCGGTAAGGGTTCTTTCAAGTACGCCTGGGTTCTTGACAAGCTCAAGGCTGAGCGTGAGCGTGGTATCACCATCGATATCGCCCTCTGGAAGTTCGAGACTCCTCGCTACTATGTCACCGTCATTGGTACGTTATCATCACTTACACTCAATACTTTCTCATGCTAACATGTACTTCAGACGCTCCCGGTCACCGTGATTTCATCAAGAACATGATCA-- Fusarium_sp._7AMSTYEL_EF --GGACAAGACTCACCTTAACGTCGTCGTCATCGGCCACGTCGACTCTGGCAAGTCGACCACTGTGAGTACTACCCTCAATGACCTGCTTATCAGCAGTCATCAACCCCGCC-ATACGTGGTGGGGTTA-ATTAACTT-ACACATTTGCTGACAAGATTGCATAGACCGGTCACTTGATCTACCAGTGCGGTGGTATCGACAAGCGAACCATCGAGAAGTTCGAGAAGGTTGGTTTCCATTTTCGTCGATCGCACGCCCTCTGCCCAT-CGATCCATCACCCGAATTAGTCTC----GACGACTGAACATGCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Fusarium_sp._9BAMSTYEL_EF ---GACAAGACTCACCTTAACGTCGTCGTCATCGGCCACGTCGACTCTGGCAAGTCGACCACTGTGAGTACTACCCTCAATGACCTGCTTATCAGCAGTCATCAACCCCGCC-ATACGTGGTGGGGTTA-ATTAACTT-ACACATTTGCTGACAAGATTGCATAGACCGGTCACTTGATCTACCAGTGCGGTGGTATCGACAAGCGAACCATCGAGAAGTTCGAGAAGGTTGGTTTCCATTTTCCTCGATCGCACGCCCTCTGCCCAT-CGATCCATCACCCGAATTAGTCTC----GACGACTGAACATGCGCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Gibberella_zeae_DQ459738 ----------------------TCGTCGTCATCGGCCACGTCGACTCTGGCAAGTCGACCACTGTGAGTACCACC-----------GC--ATC--------CCAACCCCGCCGACACTTGGCGGGGTAGTTTCAAATTTCCA-ATGTGCTGACATACTTTGATAGACCGGTCACTTGATCTACCAGTGCGGTGGTATCGACAAGCGAACCATCGAGAAGTTCGAGAAGGTTGGTCT-CATTTTCCTCGATCGCGCGCCCTTTTCCCTTTCGAAATATCATTCGAATCGCCCTCACACGACGACTCGATACGCGCCTGTTACCCCGCTCGAGGTCAAAAATTTTGCGGCTTTGTCGTAATTTTTTTTCCCCGGTGGGGCTCATACCCCGCCACTCGAGCGACAGGCGTCTGCCCTCTTCCCACAAAC-CATTCCCTGGGCGCTCATCATCACGTGTCAACCAGTCACTAACCACCTGTCAATAGGAAGCCGCCGAGCTCGGTAAGGGTTCCTTCAAGTACGCCTGGGTTCTTGACAAGCTCAAAGCCGAGCGTGAGCGTGGTATCACCATTGATATCGCCCTCTGGAAGTTCGAGACTCCTCGCTACTATGTCACCGTCATTGGTATGTTGTCACCACT-GCTGTCATCACATTCTTATACTAACATGTCTATCAGACGCTCCCGGTCACCGTG----------------------- Fusarium_equiseti_GQ505599 GAGGACAAGACTCACCTTAACGTCGTCGTCATCGGCCACGTCGACTCTGGCAAGTCGACCACTGTGAGTACTACCCTCAATGACCTGCTTATCAGCAGTCATCAACCCCGCC-ATACGTGGTGGGGTAATATCAACTT-ACACATTTGCTGACAAAATTGCATAGACCGGTCACTTGATCTACCAGTGCGGTGGTATCGACAAGCGAACCATCGAGAAGTTCGAGAAGGTTGGTTTACATTTTCCTCGATCGCACGCCCTCTGCACAC-CGATCCATCACTCGAATCAGCCTC----GATGACTGAATATGCGCCTGTCACCCCGCTCGAATACAAAA-TTTTGCGGTTCAACCGCAATTTTTT------GGTGGGGCTCATACCCCGCTGCTCGAGTGACAGGCGCTTGCCCTCTTCCCACAAAATCACCTCTTGCGC-------GTCACGTGTCAATCAGTCACTAACCACCCGACAATAGGAAGCCGCCGAGCTCGGTAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGATATCGCTCTCTGGAAGTTCGAGACTCCTCGCTACTATGTCACCGTCATTGGTATGTTGTCATCACTTACACTCATGACCTTCTCATGCTAACATGTTTTCCAGACGCTCCCGGTCACCGTGATTTCATC--------------- 'Fusarium sp. FIESC_3b KOD-2010 GQ505602' GAGGACAAGACTCACCTTAACGTCGTCGTCATCGGCCACGTCGACTCTGGCAAGTCGACCACTGTGAGTACTACCCTCAATGACCTGCTTATCAGCAGTCATCAACCCCGCC-ATACGTGGTGGGGTTA-ATTAACTT-ACACATTTGCTGACAAGATTGCATAGACCGGTCACTTGATCTACCAGTGCGGTGGTATCGACAAGCGAACCATCGAGAAGTTCGAGAAGGTTGGTTTCCATTTTCCTCGATCGCACGCCCTCTGCCCAT-CGATCCATCACCCGAATCAGTCTC----GACGACTGAACATGCGCCTGTTACCCCGCTCGAGTACAAAA-TTTTGCGGTTCAATCGTAATTTTTT------GGTGGGGCTTATACCCCGCTACTCGAGTGACAGGCGCTTGCCCTCTTCCCACAAAATCAC---TTGCGC-------ATCACGTGTCAATCAGTCACTAACCACTCGACAATAGGAAGCCGCCGAGCTCGGTAAGGGTTCCTTCAAGTACGCCTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGATATCGCTCTCTGGAAGTTCGAGACTCCTCGCTACTATGTCACCGTCATTGGTATGTTGTCACCACTTGCACTCATTACCTTCTCATGCTAACATGTATTCCAGACGCTCCCGGTCACCGTGATTTCATC--------------- 'Fusarium sp. FIESC_17a KOD-2010 GQ505613' GAGGACAAGACTCACCTTAACGTCGTCGTCATCGGCCACGTCGACTCTGGCAAGTCGACCACTGTGAGTACTACCCACGATGATCTGCTTATCAGTAGTCATCAACCCCGCC-AGATGTGGCGGGGTAAGTTCAACTGGGAATATTTGCTGACAAGATTGCATAGACCGGTCACTTGATCTACCAGTGCGGTGGTATCGACAAGCGAACCATCGAGAAGTTCGAGAAGGTTGGTTTCCATTTCCCTCGATCGCACGCCCTCTACCCAC-CGATCCATCAGTCGAATCAGTTAC----GACGATTGAATATGCGCCTGTTACCCCGCTCGAGTACAAAA-TCTTGCGTTTCAACCGTAATTTTTTTTT---GGTGGGGTGTCAACCCCGCTACTCGAGCGACAGACGTTTGCCCTCTTCCCACAAACTCATTTCTTGTGC-------ATCACGTGTCCATCAGCCACTAACCACACGACAATAGGAAGCCGCCGAGCTCGGTAAGGGTTCTTTCAAGTACGCCTGGGTTCTTGACAAGCTCAAGGCTGAGCGTGAGCGTGGTATCACCATCGATATCGCCCTCTGGAAGTTCGAGACTCCTCGCTACTATGTCACCGTCATTGGTACGTTATCATCACTTACACTCAATACTTTCTCATGCTAACATGTACTTCAGACGCTCCCGGTCACCGTGATTTCATC--------------- Fusarium_sp._NRRL_34070_GQ505642 GAGGACAAGACTCACCTTAACGTCGTCGTCATCGGCCACGTCGACTCTGGCAAGTCGACCACTGTGAGTACTACCCACGATGATCTGCTTATCAGTAGTCATCAACCCCGCC-AGATGTGGCGGGGTAAGTTCAACTGGGAATATTTGCTGACAAGATTGCATAGACCGGTCACTTGATCTACCAGTGCGGTGGTATCGACAAGCGAACCATCGAGAAGTTCGAGAAGGTTGGTTTCCATTTCCCTCGATCGCACGCCCTCTACCCAC-CGATCCATCAGTCGAATCAGTTAC----GACGATTGAATATGCGCCTGTTACCCCGCTCGAGTACAAAA-TCTTGCGGTTCAACCGTAATTTTTTTT----GGTGGGGTGTCAACCCCGCTACTCGAGCGACAGACGTTTGCCCTCTTCCCACAAACTCATTTCTTGTGC-------ATCACGTGTCCATCAGCCACTAACCACACGACAATAGGAAGCCGCCGAGCTCGGTAAGGGTTCTTTCAAGTACGCCTGGGTTCTTGACAAGCTCAAGGCTGAGCGTGAGCGTGGTATCACCATCGATATCGCCCTCTGGAAGTTCGAGACTCCTCGCTACTATGTCACCGTCATTGGTACGTTATCATCACTTACACTCAATACTTTCTCATGCTAACATGTACTTCAGACGCTCCCGGTCACCGTGATTTCATC--------------- Fusarium_sp._NRRL_36318_GQ505646 GAGGACAAGACTCACCTTAACGTCGTCGTCATCGGCCACGTCGACTCTGGCAAGTCGACCACTGTGAGTACTACCCTCAATGACCTGCTTATCAGCAGTCATCAACCCCGCC-ATACGTGGTGGGGTTA-ATTAACTT-ACACATTTGCTGACAAGATTGCATAGACCGGTCACTTGATCTACCAGTGCGGTGGTATCGACAAGCGAACCATCGAGAAGTTCGAGAAGGTTGGTTTCCATTTTCCTCGATCGCACGCCCTCTGCCCAT-CGATCCATCACCCGAATTAGTCTC----GACGACTGAACATGCGCCTGTTACCCCGCTCGAGTACAAAA-TTTTGCGGTTCAATCGTAATTTTTT------GGTGGGGCTTATACCCCGCTACTCGAGTGACAGGCGCTTGCCCTCTTCCCACAAAATCAC---TTGCGC-------ATCACGTGTCAATCAGTCACTAACCACTCGACAATAGGAAGCCGCCGAGCTCGGTAAGGGTTCCTTCAAGTACGCCTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGATATCGCTCTCTGGAAGTTCGAGACTCCTCGCTACTATGTCACCGTCATTGGTATGTTGTCACCACTTGCACTCATTACCTTCTCATGCTAACATGTATTCCAGACGCTCCCGGTCACCGTGATTTCATC--------------- Fusarium_sp._NRRL_36323_GQ505648 GAGGACAAGACTCACCTTAACGTCGTCGTCATCGGCCACGTCGACTCTGGCAAGTCGACCACTGTGAGTACTACCCTCAATGACCTGCTTATCAGCAGTCATCAACCCCGCC-ATACGTGGTGGGGTTA-ATTAACTT-ACACATTTGCTGACAAGATTGCATAGACCGGTCACTTGATCTACCAGTGCGGTGGTATCGACAAGCGAACCATCGAGAAGTTCGAGAAGGTTGGTTTCCATTTTCCTCGATCGCACGCCCTCTGCCCAT-CGATCCATCACCCGAATTAGTCTC----GACGACTGAACATGCGCCTGTTACCCCGCTCGAGTACAAAA-TTTTGCGGTTCAATCGTAATTTTTT------GGTGGGGCTTATACCCCGCTACTCGAGTGACAGGCGCTTGCCCTCTTCCCACAAAATCAC---TTGCGC-------ATCACGTGTCAATCAGTCACTAACCACTCGACAATAGGAAGCCGCCGAGCTCGGTAAGGGTTCCTTCAAGTACGCCTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGATATCGCTCTCTGGAAGTTCGAGACTCCTCGCTACTATGTCACCGTCATTGGTATGTTGTCACCACTTGCACTCATTACCTTCTCATGCTAACATGTATTCCAGACGCTCCCGGTCACCGTGATTTCATC--------------- Fusarium_sp._NRRL_36548_GQ505655 GAGGACAAGACTCACCTTAACGTCGTCGTCATCGGCCACGTCGACTCTGGCAAGTCGACCACTGTGAGTACTACCCACGATGATCTGCTTATCAGTAGTCATCAACCCCGCC-AGATGTGGCGGGGTAAGTTCAACTGGAAATATTTGCTGACAAGATTGCATAGACCGGTCACTTGATCTACCAGTGCGGTGGTATCGACAAGCGAACCATCGAGAAGTTCGAGAAGGTTGGTTTCCATTTCCCTCGATCGCACGCCCTCTACCCAC-CGATCCATCAGTCGAATCAGTTAC----GACGATTGAATATGCGCCTGTTACCCCGCTCGAGTACAAAA-TCTTGCGGTTCAACCGTAATTTTTTTT----GGTGGGGTGTCAACCCCGCTACTCGAGCGACAGACGTTTGCCCTCTTCCCACAAACTCAATTCTTGTGC-------ATCACGTGTCCATCAGCCACTAACCACACGACAATAGGAAGCCGCCGAGCTCGGTAAGGGTTCTTTCAAGTACGCCTGGGTTCTTGACAAGCTCAAGGCTGAGCGTGAGCGTGGTATCACCATCGATATCGCCCTCTGGAAGTTCGAGACTCCTCGCTACTATGTCACCGTCATTGGTACGTTATCATCACTTACACTCAATACTTTCTCATGCTAACATGTACTTCAGACGCTCCCGGTCACCGTGATTTCATC--------------- 'Fusarium incarnatum CS-2011 HM852057' --GGACAAGACTCACCTTAACGTCGTCGTCATCGGCCACGTCGACTCTGGCAAGTCGACCACTGTGAGTACTACCCACGATGATCTGCTTATCAGTAGTCATCAACCCCGCC-AGATGTGGCGGGGTAAGTTCAACTGGGAATATTTGCTGACAAGATTGCATAGACCGGTCACTTGATCTACCAGTGCGGTGGTATCGACAAGCGAACCATCGAGAAGTTCGAGAAGGTTGGTTTCCATTTCCCTCGATCGCACGCCCTCTACCCAC-CGATCCATCAGTCGAATCAGTTAC----GACGATTGAATATGCGCCTGTTACCCCGCTCGAGTACAAAA-TCTTGCGGTTCAACCGTAATTTTTTTT----GGTGGGGTGTCAACCCCGCTACTCGAGCGACAGACGTTTGCCCTCTTCCCACAAACTCATTTCTTGTGC-------ATCACGTGTCCATCAGCCACTAACCACACGACAATAGGAAGCCGCCGAGCTCGGTAAGGGTTCTTTCAAGTACGCCTGGGTTCTTGACAAGCTCAAGGCTGAGCGTGAGCGTGGTATCACCATCGATATCGCCCTCTGGAAGTTCGAGACTCCTCGCTACTATGTCACCGTCATTGGTACGTTATCATCATTTACACTCAATACTTTCTCATGCTAACATGTACTTCAGACGCTCCCGGTCACCGTGATTTCATCAAGAACATGAT---- 'Fusarium incarnatum MLST 3-b JF270235' GAGGACAAGACTCACCTTAACGTCGTCGTCATCGGCCACGTCGACTCTGGCAAGTCGACCACTGTGAGTACTACCCTCAATGACCTGCTTATCAGCAGTCATCAACCCCGCC-ATACGTGGTGGGGTTA-ATTAACTT-ACACATTTGCTGACAAGATTGCATAGACCGGTCACTTGATCTACCAGTGCGGTGGTATCGACAAGCGAACCATCGAGAAGTTCGAGAAGGTTGGTTTCCATTTTCCTCGATCGCACGCCCTCTGCCCAT-CGATCCATCACCCGAATCAGTCTC----GACGACTGAACATGCGCCTGTTACCCCGCTCGAGTACAAAA-TTTTGCGGTTCAATCGTAATTTTTT------GGTGGGGCTTATACCCCGCTACTCGAGTGACAGGCGCTTGCCCTCTTCCCACAAAATCAC---TTGCGC-------ATCACGTGTCAATCAGTCACTAACCACTCGACAATAGGAAGCCGCCGAGCTCGGTAAGGGTTCCTTCAAGTACGCCTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGATATCGCTCTCTGGAAGTTCGAGACTCCTCGCTACTATGTCACCGTCATTGGTATGTTGTCACCACTTGCACTCATTACCTTCTCATGCTAACATGTATTCCAGACGCTCCCGGTCACCGTGATTTCATCAAGAACATGATCACT Fusarium_sp._NRRL_52737_JF740814 ---GAGAAGACTCACCTTAACGTCGTCGTCATCGGCCACGTCGACTCTGGCAAGTCGACCACTGTGAGTACTACCCACGATGATCTGCTTATCAGTAGTCATCAACCCCGCC-AGATGTGGCGGGGTAAGTTCAACTGGGAATATTTGCTGACAAGATTGCATAGACCGGTCACTTGATCTACCAGTGCGGTGGTATCGACAAGCGAACCATCGAGAAGTTCGAGAAGGTTGGTTTCCATTTCCCTCGATCGCACGCCCTCTACCCAC-CGATCCATCAGTCGAATCAGTTAC----GACGATTGAATATGCGCCTGTTACCCCGCTCGAGTACAAAA-TCTTGCGGTTCAACCGTAATTTTTTTT----GGTGGGGTGTCAACCCCGCTACTCGAGCGACAGACGTTTGCCCTCTTCCCACAAACTCATTTCTTGTGC-------ATCACGTGTCCATCAGCCACTAACCACACGACAATAGGAAGCCGCCGAGCTCGGTAAGGGTTCTTTCAAGTACGCCTGGGTTCTTGACAAGCTCAAGGCTGAGCGTGAGCGTGGTATCACCATCGATATCGCCCTCTGGAAGTTCGAGACTCCTCGCTACTATGTCACCGTCATTGGTACGTTATCATCACTTACACTCAATACTTTCTCATGCTAACATGTACTTCAGACGCTCCCGGTCACCGTGATTTCATCAAGAACATGATCACT Fusarium_sp._NRRL_52745_JF740821 ---GAGAAGACTCACCTTAACGTCGTCGTCATCGGCCACGTCGACTCTGGCAAGTCGACCACTGTGAGTACTACCCACGATGATCTGCTTATCAGTAGTCATCAACCCCGCC-AGATGTGGCGGGGTAAGTTCAACTGGGAATATTTGCTGACAAGATTGCATAGACCGGTCACTTGATCTACCAGTGCGGTGGTATCGACAAGCGAACCATCGAGAAGTTCGAGAAGGTTGGTTTCCATTTCCCTCGATCGCACGCCCTCTACCCAC-CGATCCATCAGTCGAATCAGTTAC----GACGATTGAATATGCGCCTGTTACCCCGCTCGAGTACAAAA-TCTTGCGGTTCAACCGTAATTTTTTTT----GGTGGGGTGTCAACCCCGCTACTCGAGCGACAGACGTTTGCCCTCTTCCCACAAACTCATTTCTTGTGC-------ATCACGTGTCCATCAGCCACTAACCACACGACAATAGGAAGCCGCCGAGCTCGGTAAGGGTTCTTTCAAGTACGCCTGGGTTCTTGACAAGCTCAAGGCTGAGCGTGAGCGTGGTATCACCATCGATATCGCCCTCTGGAAGTTCGAGACTCCTCGCTACTATGTCACCGTCATTGGTACGTTATCATCACTTACACTCAATACTTTCTCATGCTAACATGTACTTCAGACGCTCCCGGTCACCGTGATTTCATCAAGAACATGATCACT ; END; BEGIN TREES; Title FUSARI~2; LINK Taxa = Taxa; TRANSLATE 1 Fusarium_sp._22AMSTYEL_EF, 2 Fusarium_sp._7AMSTYEL_EF, 3 Fusarium_sp._9BAMSTYEL_EF, 4 Gibberella_zeae_DQ459738, 5 Fusarium_equiseti_GQ505599, 6 'Fusarium sp. FIESC_3b KOD-2010 GQ505602', 7 'Fusarium sp. FIESC_17a KOD-2010 GQ505613', 8 Fusarium_sp._NRRL_34070_GQ505642, 9 Fusarium_sp._NRRL_36318_GQ505646, 10 Fusarium_sp._NRRL_36323_GQ505648, 11 Fusarium_sp._NRRL_36548_GQ505655, 12 'Fusarium incarnatum CS-2011 HM852057', 13 'Fusarium incarnatum MLST 3-b JF270235', 14 Fusarium_sp._NRRL_52737_JF740814, 15 Fusarium_sp._NRRL_52745_JF740821; TREE tree1 = (4:0.045736305,((1:9.5928E-4,(11:0.00217101,((14:0.0,15:0.0):0.00131496,(8:-4.578E-5,(7:0.001505,12:0.00143899):4.232E-5):1.3169E-4):7.0414E-4):0.00298035):0.04997366,(5:0.02395853,(13:-8.6139E-4,(6:-8.8464E-4,(9:-0.00184479,(10:-0.00338211,(2:0.00365959,3:-3.3842E-4):0.00337661):0.00184479):0.00282473):8.6139E-4):0.01121871):0.01297539):0.045736305)[% ] [% ] [% setBetweenBits = selected ]; END;