#NEXUS BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=50; TAXLABELS Caloplaca_trachyphylla_EU639651 Xantoria_elegans_EU639642 Caloplaca_ferrarii_s.lat._HQ699662 Caloplaca_crenulatella_s.lat._HQ699658 Caloplaca_ferrarii_s.lat._HQ699657 Caloplaca_aquensis_HQ699656 Caloplaca_borysthenica_HQ699655 Caloplaca_crenulatella_s.lat._HQ699654 Caloplaca_ferrarii_s.lat._HQ699653 Caloplaca_aquensis_HQ699652 Caloplaca_ferrarii_s.lat._HQ699651 Caloplaca_tominii_HQ699650 Caloplaca_borysthenica_HQ699649 Caloplaca_diffusa_HQ699648 Caloplaca_diffusa_HQ699647 Caloplaca_crenulatella_s.lat._HQ699645 Caloplaca_lactea_HQ699644 Caloplaca_ferrarii_s.lat._HQ699643 Caloplaca_crenulatella_s.lat._HQ699642 Caloplaca_interfulgens_HQ699640 Caloplaca_interfulgens_HQ699639 Caloplaca_erichansenii_HQ699638 Caloplaca_ferrarii_s.lat._HQ699637 Caloplaca_ferrarii_s.lat._HQ699636 Caloplaca_crenulatella_s.lat._HQ699635 Caloplaca_marmorata_HQ699631 Caloplaca_marmorata_HQ699630 Caloplaca_marmorata_HQ699629 Caloplaca_crenulatella_HQ699628 Caloplaca_marmorata_HQ699627 Caloplaca_tominii_HQ699626 Caloplaca_tominii_HQ699625 Caloplaca_lactea_Italy Caloplaca_interfulgens_Turkey_1 Caloplaca_interfulgens_Turkey_3 Caloplaca_interfulgens_Turkey_2 Caloplaca_lactea_Greece Caloplaca_interfulgens_Czech_Republic_3 Caloplaca_interfulgens_Czech_Republic_4 Caloplaca_interfulgens_Czech_Republic_2 Caloplaca_ferrarii_s.lat._Czech_Republic_2 Caloplaca_interfulgens_Southern_Russia Caloplaca_interfulgens_Czech_Republic_1 Caloplaca_interfulgens_Slovakia_2 Caloplaca_interfulgens_Slovakia_1 Caloplaca_ferrarii_s.lat._Czech_Republic_3 Caloplaca_interfulgens_Czech_Republic_5 Caloplaca_ferrarii_s.lat._Czech_Republic Caloplaca_ferrarii_s.lat._Czech_Republic_4 Caloplaca_sp._Southern_Russia ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=525; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Caloplaca_trachyphylla_EU639651 CTGAGAGAG--GGATCTTGCGTCCCCC-GGGGGGTTTCGGCCCTCTACCTCTTCAACCCTGTGTGTACCACTCTTTGTTGCTTTGGCGAGTGCCGGGGCTC-CT----GT-TCCAGCCCTGACCT-T-GG-TCAGCGAGCCCTCGCCAGAGGCC----CATTAAAATTCTGTTT-C-CAGGGTCGTCCGAGTAT--ACAAATTAAATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTTT-GCTTGGTATTGGGCGCTC-CGC---GAGGA-GGCGTGCCCGAAAA-TTAGTGGCGGTCCGGGGAGACTT-CAAGCGCAGTA-AATC-TTT-CCGCTTTCGAGGTT-CTGCCTG-CGATCCGGCCATCAAACCTCCC Xantoria_elegans_EU639642 CTAAGAGAG--GGATGACGCTTTCCCC-GGGGGGCTGCGCCCCTC-ACCTCTTCAACCCTGTGTCTACCAACCGCTGTTGCTTCGGCGAGCGTCGGGGCGT-CC--GCGC-CCCGGCCCCGGCTT-T-GG-TCGGTGAGCTCTCGCCTGAGGCC----TATCTTTATTCTGTTT-TGCAGTGACGTCCGAGAAT--ACCAATATAATCAATTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-C-TGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTT-GCTTGGTATTGGGCTCTC-CGTCCGGGGGA-GGCGTGCCCGCAAA-CTAGTGGCGGTCCAGGGAGACTT-CAAGCGCAGTAGAATCATTT--CGCTTTCGAGGTG-TCGCCTG-TGGCCGGGCCGT-AAAACCCCC Caloplaca_ferrarii_s.lat._HQ699662 CTGAGAGAGAGGGACCTCGCGTCCCC--GGGGGGCTTCGGCCCTCCACCTCTTCAACCC-GTGCTTACAAACCTCTGTTGCTTTGGCGAGCGCCGGGGTGC-CTC-CCGC-CTCGGCCCCGACCC-TAGG-TCGGTGCGTTCTCGCCAGAGCCC----CCAAAGCATTCTGTTTATTCAGTGACGTCCGAGTATT-ACCACAAT---AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTT-GCTTGGTATTGAGCTTTT-CGCC--GGAGACGGCGTGCTCGAAAA-TTAGTGGCGGTCCAGGGAGACTT-CAAGCGCAGTA-AAAC-TTT-CCGCTTTCGAGGTTCTCGCCTG-TGGCC-AGCCGT-AACCCCCCC Caloplaca_crenulatella_s.lat._HQ699658 CTGAGAGAG--GGACCTCGCGTCCCCC-GGGGGGCTTCGGCCCTCCACCTCTTCAACCC-GTGCTTATAAACCTCTGTTGCTA-GGCGATCGCCGGGGTGC-CTC-GCGC-CTCGGCCCTGACCC-TAGGGTCGGTGCGTTCTCGCCAGAGCCC----CCCTACCATTCTGTTTATTCAGTGACGTCCGAGTATG-ATCAAAATTT-AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTC-GCTTGGTATTGAGCTCTT-CGCC--GGAGACGGCGTGCTCGAAAA-TCAGTGGCGGTCCAGGGAGACTT-CAAGCGCAGTA-AAAC-TTT-CCGCTTTCGAGGCTTTCACCTG-TGGCC-AGCCGT-AAAGCCCCC Caloplaca_ferrarii_s.lat._HQ699657 CTGAGAGAG-GGGACCTCGCGTCCCCC-GGGGGGCTTCGGCCCTCCACCTCTTCAACCC-GTGTTTATAAACCTCCGTTGCTTTGGCGAGCGCCGGGGTGC-CTC-CCAC-CTCGGCCCTGACCC-TAGG-TCGGTGCGTTCTCGCCAGAGCCC----CC-AACCATTCTGTTTATTCAGTGACGTCCGAGTATGAATCAAAATTT-AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTC-GCTTGGTATTGAGCTTTT-CGCC--GGAGACGGCGTGCTCGAAAA-TTAGTGGCGGTCCAGGGAGACTT-CAAGCGCAGTA-AAAC-TTT-CCGCTTTCGAGGCTCTCACCTG-TGGCC-AGCCGT-AAAGCCCCC Caloplaca_aquensis_HQ699656 CTGAGAGAG--GGACCTCGCGTCCCTC-GGGGGGCTTCGGCCCTCCATCTCTTCAACCC-GTGCCTATAACCCTCTGTTGCTTTGGCGAGCGCCGGGGCGC-CCC-CCGC-CCCGGCCCTGACCC-TCGGGTCGGTGCGTTCTCGCCGGAGCCC----CCTAAGCATTCTGTTTGTTCAGTGACGTCCGAGTATT-ACCAAAATAT-AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGCATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTC-GCTTGGTATTGAGCCTTT-CGCC--GGAGACGGCGTGCTCGAAAA-CTAGTGGCGGTCCAGGGAGACTT-CAAGCGCAGTA-AAAC-TTT-TCGCTTCGGAGGTTCTCGCCTG-TGACC-GGCCGT-AAACCCCCC Caloplaca_borysthenica_HQ699655 CTGAGAGAG--GGACCTCGCGTCCCCC-GGGGGGCTTCGGCTCTCCACCTCTTCAACCC-GTGTTTATAAACCTCTGTTGCTTTGGCGAGCGCCGGGGTGC-CTC-CCAC-CTCGGCCCTGACCC-TAGG-TCGGTGCGTTCTCGCCAGAGCCC----CC-AGCCATTCTGTTTATTCAGTGACGTCCGAGTATG-ATCAAAATTT-AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTC-GCTTGGTATTGAGCTTTT-CGCC--GGAGACGGCGTGCTCAAAAA-TTAGTGGCGGTCCAGGGAGACTT-CAAGCGCAGTA-AAAC-TTT-CCGCTTTCGAAGCTCTCGCCTG-TGGCC-AGCCGT-AAAGCCCCC Caloplaca_crenulatella_s.lat._HQ699654 CTGAGAGAG--GGACCTCGCGTCCCCC--GGGGGCTTCGGCCCTCCACCTCTTCAACCC-GTGCTTATAAACCTCTGTTGCTTTGGCGAGCGCCGGGGTGC-CTC---------GGCCCTGACCC-TAGGGTCGCTGCGTTCTCGCCAGAGCCC----CCCAACCATTCTGTTTATTCAGTGACGTCCGAGTATG-ATCAAAATTT-AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTC-GCTTGGTATTGAGCTCTT-CGCC--GGAGACGGCGTGCTCGAAAA-TCAGTGGCGGTCCAGGGAGACTT-CAAGCGCAGTA-AAAC-TTT-CCGCTTTCGAGGCCTTCACCTG-TGGCC-AGCCGT-AAAGCCCCC Caloplaca_ferrarii_s.lat._HQ699653 CTGAGAGAG--GGACCTTGCGTCCCCC-GGGGGGCTTCGGCCCTCCACC-CTCCAACCC-GTGCTTATAAACCTCTGTTGCTTTGGCGAGCGCCGGGGTGC-CTC-CCGC-CTCGGCCCCGACCCCTAGG-TCGGTGCGTTCTCGCCAGAGCCC----CCAAAGCATTCTGTTTATTTATCGACGTCCGAGTATT-ACCACAAT---AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-CGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTTGGCTTGGTATTGAGCTTTT-CGCC--GGAGACGGCGTGCTCGAAAA-TTAGTGGCGGTCCAGGGAGACTT-CAAGCGCAGTA-AAAC-TTC-CCGCTTTCGAGGTTCTCGCCTG-TGGCT-AGCCGT-ACCCCCCCC Caloplaca_aquensis_HQ699652 CTGAGAGAG--GGACCTCGCGTCCCTC-GGGGGGCTTCGGCCCTCCATCTCTTCAACCC-GTGCCTATAACCCTCTGTTGCTTTGGCGAGCGCCGGGGCGC-CCC-CCGC-CCCGGCCCTGACCC-TCGGGTCGGTGCGTTCTCGCCGGAGCCC----CCTAAGCATTCTGTTTGTTCAGTGACGTCCGAGTATT-ACCAAAATAT-AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGCATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTC-GCTTGGTATTGAGCCTTT-CGCC--GGAGACGGCGTGCTCGAAAA-CTAGTGGCGGTCCAGGGAGACTT-CAAGCGCAGTA-AAAC-TTT-TCGCTTCGGAGGTTCTCGCCTG-TGACC-GGCCGT-AAACCCCCC Caloplaca_ferrarii_s.lat._HQ699651 CTGAGAGAG--GGACCTCGCGTCCCC--GGGGGGCTTCGGCCCTCCACCTCCTCAACCC-GTGCTTATAACCCTCTGTTGCTTTGGCGAGCGTCGGGGTGC-CTC-CCGC-CCCGGCCCTGACCC-TAGG-TCGGTGCGTTCTCGCCAGAGCCC----CCAAAGCATTCTGTCTATTCAGTGACGTCCGAGTATA-ACCATAAT---AAATTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTT-GCTTGGTCTTGAGCTTCT-CGCC--GGCGACGGCGTGCTCGAAAA-TTAGTGGCGGTCCAGGGAGACTT-CAAGCGCAGTA-AAAC-TTT-CCGCTTTCGAGGTTCTCGCCTG-TGGCC-AGCCGT-AAACCCCCC Caloplaca_tominii_HQ699650 CTGAGAGAG--GGACCTCGTGTCCCC--GGGGGGCTTCGGCCCCCTACCTCTTTAACCC-GTGCTTATAAACCTCTGTTGCTTTGGCGAGCGCCGGGGTGT-CTC-CCGC-CTCGGCCCTGACCC-TAGGGTCGGTGCGTTCTCGCCAGAGCCC----CCTCAGAATTCTCTTTATTTAGTGACGTCCGAGTAT--ATCAAAATAT-AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTT-GCTTGGTATTGAGCTTTT-CGCC--GGAGACGGCGTGCTCGAAAA-TTAGTGGCGGTCCAGGGAGACTT-CAAGCGCAGTA-AATC-TTT-CCGCTTCCGAGGTCTTCGCCTG-TGATC-AGCCGT-AAACCCCCC Caloplaca_borysthenica_HQ699649 CTGAGAGAG--GGACCTCGCGTCCCCC-GGGGGGCTTCGGCTCTCCACCTCTTCAACCC-GTGTTTATAAACCTCTGTTGCTTTGGCGAGCGCCGGGGTGC-CTC-CCAC-CTCGGCCCTGACCC-TAGG-TCGGTGCGTTCTCGCCAGAGCCC----CC-AGCCATTCTGTTTATTCAGTGACGTCCGAGTATG-ATCAAAATTT-AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTC-GCTTGGTATTGAGCTTTT-CGCC--GGAGACGGCGTGCTCAAAAA-TTAGTGGCGGTCCAGGGAGACTT-CAAGCGCAGTA-AAAC-TTT-CCGCTTTCGAAGCTCTCGCCTG-TGGCC-AGCCGT-AAAGCCCCC Caloplaca_diffusa_HQ699648 CTGAGAGGG--GGACTTCGCGTCCCCC-GGGGGGTTTCGGCCCTCCAACTCTTCAACCC-GTGCTTACACACCTCTGTTGCTTTGGCGAGCGCCGGGGCGT-CTC-ACGT-CTCGGCCCTGACCC-TAGGGTCGGTGCGTTCTCGCCAGAGCCC----CCTAATCATTCTGTTTGTTCAGTGACGTCCGAGTATT-ATCG-AATAT-AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGCGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAATCCTCAAGCTTT-GCTTGGTATTGAGCTTTT-CGCC--GGAGACGGCGTGCTCGAAAA-TTAGTGGCGGTCCAGGGAGACTT-CAAGCGCAGTA-AAAC-TTTCCCGCTTTCGAGGTTCCCGCCTG-TGGCC-AGCCGTTAAACCCCCC Caloplaca_diffusa_HQ699647 CTGAGAGGG--GGACTTCGCGTCCCCC-GGGGGGTTTCGGCCCTCCAACTCTTCAACCC-GTGCTTACACACCTCTGTTGCTTTGGCGAGCGCCGGGGCGT-CTC-ACGT-CTCGGCCCTGACCC-TAGGGTCGGTGCGTTCTCGCCAGAGCCC----CCTAATCATTCTGTTTGTTCAGTGACGTCCGAGTATT-ATCG-AATAT-AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGCGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAATCCTCAAGCTTT-GCTTGGTATTGAGCTTTT-CGCC--GGAGACGGCGTGCTCGAAAA-TTAGTGGCGGTCCAGGGAGACTT-CAAGCGCAGTA-AAAC-TTTCCCGCTTTCGAGGTTCCCGCCTG-TGGCC-AGCCGTTAAACCCCCC Caloplaca_crenulatella_s.lat._HQ699645 CTGA-AGAG--GGACCTCGCGTCCCCC-GGGGGGCTTCGGCCCTCCACCTCTTC-ACCC-GTGTTTATAAACCTCTGTTGCTTTGGCGAGCGCCGGGGTGC-CTCCCCAC-CTCGGCCCTGACCCGTAGG-TCGGTGCGTTCTCGCCAGAGCCT----CCTC-CCATTCTGTTTATTCAGTGACGTCCGAGTATG-ACCAAAATTC-AAATTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTC-GCTTGGTATTGAGCTTTT-CGCC--GGAGACGGCGTGCTCGAAAA-TCAGTGGCGGTCCAGGGAGACTTTCAAGCGCAGTA-AAAC-TTTTCCGCTTTCGAGGCTCTCACCTG-TGGCC-AGCCGT--AAGCCCCC Caloplaca_lactea_HQ699644 CTGAGAGGG--GGACCTCGTGTCCCCC-GGGGGGCTTCGGCCCTCCACCTCTTCAACCC-GTGCTTATCAACCTCTGTTGCTTTGGCGAGCGCCGGGGCGC-CCC-CCGT-CTCGGCCCCGACCC-CAAAGTCGGTGCGTTCTCGCCAGAGCCC----CCTAAGCATTCTGTTTATTTAGTGACGTCCGAGTATT-ACCAAAATTT-AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTT-GCTTGGTATTGAGCTTTT-CGTC--GGAGGCGGCGTGCTCGAAAA-TTAGTGGCGGTCCAGGGAGACTT-CAAGCGCAGTA-AAAC-TTTTTCGCTTTCGAGGTCCTCGCCTG-TGACC-AGCCGT-AAACCCCCC Caloplaca_ferrarii_s.lat._HQ699643 CTGAGAGAG--GGACCTCGCGTCCCC---GGGGGCTTCGGCCTTCCACCTCTTCAACCC-GTGCTTATAAACCTCTGTTGCTTTGGCGAGCGCCGGGGTGC-CTC-CCGC-CTCGGCCCCGACCC-TAGG-TCGGTGCGTTCTCGCCAGA-CCC----CCAAAGCATTCTGTTTATTTAGTGACGTCCGAGTATT-ACCACAAT---AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAA-CTTT-GCTTGGTATTGAGCTTTT-CGCC--GGAGACGGCGTGCCCAAAAA-TTAGTGGCGGTCCAGGGAGACTT-CAAGCGCAGTA-AAAC-TTT-CCGCTTTCGAGGTT-TCGCCTG-TGGCC-AGCCGT-AAACCCCCC Caloplaca_crenulatella_s.lat._HQ699642 CTGAGAGAG--GGACCTCGTGTCCCCC-GGGGGGCTTCGACCCTCCACCTCTTCAACCC-GTGCTTATAAACCTCTGTTGCTTTGGCGAGCGCCGGGGCGC-CTC-GCGC-CTCGGCCCTGACCC-TAGGGTCGGTGCGTTCTCGCCAGAGCCC----CCTAAGCATTCTGTTTATTCAGTGACGTCCGAGTATT-ACCAAAATAT-AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTC-GCTTGGTATTGAGCTCTT-CGCC--GGAGACGGCGTGCTCGAAAA-TTAGTGGCGGTCCAGGGAGACTT-CAAGCGCAGTA-AAAC-TTT-CCGCTTACGAGGTTCTCGCCTG-TGGCC-AGCCGT-AAAACCCCC Caloplaca_interfulgens_HQ699640 CTGAGAGAG--GGACCTCGCGTCCCC--GGGGGGCTTCGGCCCTYTATCTCTTTCACCC-GTGCTTATAAATCTCTGTTGCTTTGGCGAGCGCCGGGGTGC-CTC-CCGC-CTCGGCCCTGACCC-TAGGGTCGGTGCGTTCTCGCCAGAGCCC----CCTCAGCATTCTCTTTATTTAGTGACGTCCGAGTATC-ATCAAAATAT-AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTT-GCTTGGTATTGAGCTTTT-CGCC--GGAGACGGCGTGCTCGAAAA-TTAGTGGCGGTCCAGGGAGACTT-CAAGCGCAGTA-AAAC-TTT-CCGCTTTCGAGGTCCTCGCCTG-TGACC-AGCCGT-AAACCCCCC Caloplaca_interfulgens_HQ699639 CTGAGAGAG--GGACCTCGCGTCCCC--GGGGGGCTTCGGCCTTCTATCTCTTTCACCC-GTGCTTATAAATCTCTGTTGCTTTGGCGAGCGCCGGGGTGTCTTC-CCGCACTCGGCCCTGACCC-TAGGGTCGGTGCGTTCTCGCCAGAGCCC----CCTCAGCAATCTCTTTATTTAGTGACGTCCGAGTATC-ATCAAAATAT-AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTT-GCTTGGTATTGAGCTTTT-CGCC--GGAGACGGCGTGCTCGAAAA-TTAGTGGCGGTCCAGGGAGACTT-CAAGCGCAGTA-AAAC-TTT-CCGCTTTCGAGGTCCTCGCCTG-TGACC-AGCCGT-AAACCCCCC Caloplaca_erichansenii_HQ699638 CTGAGAGAG--GGACCTCGCGTCCCCC-GGGGGGCTTCGGCCCTCCACCTCTTCAACCC-GTGTTTATAAACCTCTGTTGCTTTGGCGAGCGCCGGGGKGC-CTC-CCAC-CTCGGCCCKGACCC-TAGG-TCGGTGCGTTCTCGCCAGAGCCC----CC-AACCATTCTGTTTATTCAGTGAAGTCCGARTATT-ATTATAATTT-AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTC-GCTTGGTATTGAGCTTTT-CGCC--GGAGACGGCGTGCTCGAAAA-TTAGTGGCGGTCCGGGGAGACTT-CAAGCGCAGTA-AAAC-TTT-CCGCTTTCGAGGTTCTCGTCTG-TGATT-AGCCGTAAAAGCCCCC Caloplaca_ferrarii_s.lat._HQ699637 CTGAGAGAG-GGGACCTCGCGTCCCCC-GGGGGGCTTCGGCCCTCCACCTCTTCAACCC-GTGTTTATAAACCTCCGTTGCTTTGGCGAGCGCCGGGGTGC-CTC-CCAC-CTCGGCCCTGACCC--AGG-TCGGTGCGTTCTCGTCAGAGCCC----CC-AACTATTCTGTTTATTCAGTGACGTCCGAGTATGAATCAAAATTT-AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTC-GCTTGGTATTGAGCTTTT-CGCC--GGAGACGGCGTGCTCGAAAA-TTAGTGGCGGTCCAGGGAGACTT-CAAGCGCAGTA-AAAC-TTT-CCGCTTTCGAGGCTCTCACCTG-TGGCC-AGCCGT-AAAGCCCCC Caloplaca_ferrarii_s.lat._HQ699636 CTGAGAGAG-GGGACCTCGCGTCCCCC-GGGGGGCTTCGGCCCTCCACCTCTTCAACCC-GTGTTTATAAACCTCCGTTGCTTTGGCGAGCGCCGGGGTGC-CTC-CCAC-CTCGGCCCTGACCC--AGG-TCGGTGCGTTCTCGTCAGAGCCC----CC-AACTATTCTGTTTATTCAGTGACGTCCGAGTATGAATCAAAATTT-AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTC-GCTTGGTATTGAGCTATT-CGCC--GGAGACGGCGTGCTCGAAAA-TTAGTGGCGGTCCAGGGAGACTT-CAAGCGCAGTA-AAAC-TTT-CCGCTTTCGAGGCTCTCACCTG-TGGCC-AGCCGT-AAAGCCCCC Caloplaca_crenulatella_s.lat._HQ699635 -------------------CGTCCCCC-GGGGGGCTTCGGCCTTTCACCTCTTCAACCC-GTGCTTATAAACCTCTGTTGCTTTGGCGAGCGCCGGGGCGT-CTC-ACGCCTTCGGCCCTGACCC-CCGGGTCGGTGCGTTCTCGCCAGAGCCC----CCCAACCATTCTGTTTATTCAGTGACGTCCGAGTATA-ATCAAAATTT-AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTC-GCTTGGTATTGAGCTCTT-CGCC--GGAGACGGCGTGCTCGAAAA-TTAGTGGCGGTCCAGGGAGACTT-CAAGCGCAGTA-AAAC-TTT-CCGCTTA-GAGGTTCTCGCCTG-TGACT-AGCCGT-AAAACCCCC Caloplaca_marmorata_HQ699631 -----------GGACCTCGCGTCCCCCCGGGGGGCTTCGGCCCTCCACCTCTTCAACCC-GTGCTTATAAACCTCTGTTGCTTTGGGGTGCGCCGGGGCGC-CTC-CCGC-CTCGGCCCCGACCC-TAAGGCCGGTGCGTTCTCGCCAGAGCCC----CCTCAGCATTCTGTTTATTCAGTGACGTCCGAGTATT-ACCAAAATAT-AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTC-GTTTG-TATTGAGCTTTT-CGCC--GGAGACGGCCTGCTCGAAAA-TTAGTGGCGGTCCAGGGAGACTT-CAAGCGCAGTA-AAAC-TTC-CCGCTTTCGAGGTTCTCGCCTG-CGACC-AGCCGTGAAACCACCA Caloplaca_marmorata_HQ699630 CTGAGAGAG--GGACCTCGKGTCCCCC-GGGGGGCTTCGGCCCTCCACCTCTTCAACCC-GTGCTTATAAACCTCTGTTGCTTTGGCGAGCGCCGGGGCGC-CTC-CCGC-CTCGGCCC-GACCC-TAAGGCCGGTGCGTTCTCGCCAGAGCCC----CCTMAGCATTCTGTTTATTCAGTGACGTCCGAGTATT-ACCAAAATAT-AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTT-GCTTGGTATTGAGCTTTT-CGCC--GGAGACGGCSTGCTCGAAAA-TTAGTGGCGGTCCGGGGAGACTT-CAAGCGCAGTA-AAAC-TTC-CCGCTTTCGAGGTTCTCGCCTG-CGACC--GCCGTGAAACCCCCA Caloplaca_marmorata_HQ699629 CTGAGAGAG--GGACCTCGCGTCCCCC-GGGGGGCTTCGGCCCTCCACCTCTTCAACCC-GTGCTTATAAMTCTCTGTTGCTTTGGCGAGCGCCGGGGTGC-CCC-CCGC-CTCGGCCCCGACCC-TAGG-TCGGTGCGTTCTCGCCAGAGCCC----CC-AACCATTCTGTTTATTCAGTGACGTCCGAGTATT-ACCCTAATGT-AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCCT-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTT-GCTTGGTATTGAGCCTTT-CGCC--GGAGACGGCCTGCTCGAAAA-TTAGTGGCGGTCCAGGGAGACTT-CAAGCGCAGTA-AAAC-TTC-CCGCTTTCGAGGTTCTCGCCTG-CGACC-AGCCGTGAAACCCCCA Caloplaca_crenulatella_HQ699628 CTGAGAGAG--GGACCTCGCGTCCCCC-GGGGGGCTTCGGCCCTCCACCTCTTCAACCC-GTGTTTATAAACCTCTGTTGCTTTGGCGAGCGCCGGGGTGCCCTC-CCAC-CCCTGCCCTGACCC-TAGG-TCGGTGCGTTCTCGCCAGAGCCT----CC-AACCATTCTGTTTATTCAGTGACGTCCGAGTATT-ATTATAATTT-AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-TGTGGTATTCCGAGGGGCATGCCTGTTCGAGCGT-ATTGCAACCCTCAAGCTTC-GCTTGGTATTGAGCTTTT-CGCC--CGAGATGGCGTGCTCGAAAAATTAGTGGCGGTCCGGGGAGACTT-CAAGCGCAGTA-AAAC-TTT-CCGCTTTCGAGGTTCTCGCCTG-TGACT-AGCCGT-AAACCCCCC Caloplaca_marmorata_HQ699627 CTGAGAGAG--GGACCTCGTGTCCCCC-GGGGGGTTTCGGCCCTCCACCTCTTCAACCC-GTGCTTATAGACCTCTGTTGCTTTGGCGAGCGCCGGGGCGC-CTC-CCGC-CTCGGCCCCGGCCC-CAAGGCCGGTGCGTTCTCGCCAGAGCCC----CCTAAGCATTCTGTTTATTCAGTGACGTCCGAGTATG-ACCAAAATAT-AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTT-GCTTGGTATTGAGCTTTT-CGCC--GGAGACGGCGTGCTCGAAAA-TTAGTGGCGGTCCAGGGAGACTT-CAAGCGCAGTA-AAAG-TTC-CCGCTTTCGAGGTTCTCGCCTA-CGACC-GGCCGT-AAAACCCCC Caloplaca_tominii_HQ699626 CTGAGAGAG--GGACCTCGTGTCCCC--GGGGGGCTTCGGCCCCCTACCTCTTCAACCC-GTGCTTATAAACCTCTGTTGCTTTGGCGAGCGCCGGGGTGT-CTC-CCGC-CTCGGCCCTGACCC-TAGGGTCGGTGCGTTCTCGCCAGAGCCC----CCTCAGCATTCTATTTATTCAGTGACGTCCGAGTAA--AYCAAAATAT-AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTT-GCTTGGTATTGAGCTTTT-CGCC--GGAGACGGCGTGCTCGAAAA-TTAGTGGCGGTCCAGGGAGACTT-CAAGCGCAGTA-AATC-TTT-CCGCTTTCGAGGTCCTCGCCTG-TGATC-AGCCGT-AAACCCCCC Caloplaca_tominii_HQ699625 CTGAGAGAG--GGACCTCGTGTCCCC--GGGGGGCTTCGGCCCCCTACCTCTTCAACCC-GTGCTTATAAACCTCTGTTGCTTTGGCGAGCGCCGGGGTGT-CCC-CCGC-CTCGGCCCCGACCC-TAGGGTCGGTGCGTTCTCGCCAGAGCCC----CCTCAGCATTCTCTTTATTTAGTGACGTCCGAGTAT--ATCAAAATAT-AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTT-GCTTGGTATTGAGCTTTT-CGCC--GGAGACGGCGTGCTCGAAAA-TTAGTGGCGGTCCAGGGAGACTT-CAAGCGCAGTA-AATC-TTT-CCGCTTCCGAGGTCCTCGCCTG-TGACC-AGCCGT-AAACCCCCC Caloplaca_lactea_Italy CTGAGAGGG--GGACCTCGTGTCCCCC-GGGGGGCTTCGGCCCTCCACCTCTTCAACCC-GTGCTTATCAACCTCTGTTGCTTTGGCGAGCGCCGGGGCGC-CCC-CCGT-CTCGGCCCCGACCC-CAAAGTCGGTGCGTTCTCGCCAGAGCCC----CCTAAGCATTCTGTTTATTTAGTGACGTCCGAGTATT-ACCAAAATTT-AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTT-GCTTGGTATTGAGCTTTT-CGTC--GGAGGCGGCGTGCTCGAAAA-TTAGTGGCGGTCCAGGGAGACTT-CAAGCGCAGTA-AAAC-TTTTTCGCTTTCGAGGTCCTCGCCTG-TGACC-AGCCGT-AAACCCCCC Caloplaca_interfulgens_Turkey_1 CTGAGAGAG--GGACCTCGCGTCCCC--GGGGGGCTTCGGCCCTCTATCTCTTGCACCC-GTGCTTATAAATCTCTGTTGCTTTGGCGAACGCCGGGGTGC-CTC-CCGC-CTCGGCCCTGACCC-TAGGGTCGGTGCGTTCTCGCCAGAGCCC----CCTCAGCATTCTCTTTATTTAGTGACGTCCGAGTATC-ATCAAAATAT-AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTT-GCTTGGTATTGAGCTTTT-CGCC--GGAGACGGCGTGCTCGAAAA-TTAGTGGCGGTCCAGGGAGACTT-CAAGCGCAGTA-AAAC-TTT-CCGCTTTCGAGGTCCTCGCCTG-TGACC-AGCCGT-AAACCCCCC Caloplaca_interfulgens_Turkey_3 CTGAGAGAG--GGACCTCGCGTCCCC--GGGGGGCTTCGGCCCTCTATCTCTTTCACCC-GTGCTTATAAATCTCTGTTGCTTTGGCGAGCGCCGGGGTGT-CTC-CCGC-CTCGGCCCTGACCC-TAGGGTCGGTGCGTTCTCGCCAGAGCCC----TCTCAGCAATCTCTTTATTTAGTGGCGTCCGAGTATC-ATCAAAATAT-AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTT-GCTTGGTATTGAGCTTTT-CGCC--GGAGACGGCGTGCTCGAAAA-TTAGTGGCGGTCCAGGGAGACTT-CAAGCGCAGTA-AAAC-TTT-CCGCTTTCGAGGTCCTCGCCTG-TGACC-AGCCGT-AAACCCCCC Caloplaca_interfulgens_Turkey_2 CTGAGAGAG--GGACCTCGCGTCCCC--GGGGGGCTTCGGCCCTCTATCTCTTCCACCC-GTGCTTATAAATCTCTGTTGCTTTGGCGAACGTCGGGGTGC-CTC-CCGC-CTCGGCCCTGACCC-TAGGGTCGGTGCGTTCTCGCCAGAGCCC----CCTCAGCATTCTCTTTATTTAGTGACGTCCGAGTATC-ATCAAAATAT-AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTT-GCTTGGTATTGAGCTTTT-CGCC--GGAGACGGCGTGCTCGAAAA-TTAGTGGCGGTCCAGGGAGACTT-CAAGCGCAGTA-AAAC-TTT-CCGCTTTCGAGGTCCTCGCCTG-TGACC-AGCCGT-AAACCCCCC Caloplaca_lactea_Greece CTGAGAGGG--GGACCTCGTGTCCCCC-GGGGGGCTTCGGCCCTCCACCTCTTCAACCC-GTGCTTATCAACCTCTGTTGCTTTGGCGAGCGCCGGGGCGC-CCC-CCGT-CTCGGCCCCGACCC-CAAAGTCGGTGCGTTCTCGCCAGAGCCC----CCTAAGCATTCTGTTTATTTAGTGACGTCCGAGTATT-ACCAAAATTT-AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTT-GCTTGGTATTGAGCTTTT-CGTC--GGAGGCGGCGTGCTCGAAAA-TTAGTGGCGGTCCAGGGAGACTT-CAAGCGCAGTA-AAAC-TTTTTCGCTTTCGAGGTCCTCGCCTG-TGACC-AGCCGT-AAACCCCCC Caloplaca_interfulgens_Czech_Republic_3 CTGAGAGAG--GGACCTCGCGTCCCC--GGGGGGCTTCGGCCCTCTATCTCTTTCACCC-GTGCTTATAAATCTCTGTTGCTTTGGCGAGCGCCGGGGTGT-CTC-CCGC-CTCGGCCCTGACCC-TAGGGTCGGGGCGTTCTCGCCAGAGCCC----CCTCAGCAATCTCTTTATTTAGTGGCGTCCGAGTATC-ATCAAAATAT-AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTT-GCTTGGTATTGAGCTTTT-CGCC--GGAGACGGCGTGCTCGAAAA-TTAGTGGCGGTCCAGGGAGACTT-CAAGCGCAGTA-AAAC-TTT-CCGCTTTCGAGGTCCTCGCCTG-TGACC-AGCCGT-AAACCCCCC Caloplaca_interfulgens_Czech_Republic_4 CTGAGAGAG--GGACCTCGCGTCCCC--GGGGGGCTTCGGCCCTCTATCTCTTTCACCC-GTGCTTATAAATCTCTGTTGCTTTGGCGAGCGCCGGGGTGT-CTC-CCGC-CTCGGCCCTGACCC-TAGGGTCGGTGCGTTCTCGCCAGAGCCC----CCTCAGCAATCTCTTTATTTAGTGGCGTCCGAGTATC-ATCAAAATAT-AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTT-GCTTGGTATTGAGCTTTT-CGCC--GGAGACGGCGTGCTCGAAAA-TTAGTGGCGGTCCAGGGAGACTT-CAAGCGCAGTA-AAAC-TTT-CCGCTTTCGAGGTCCTCGCCTG-TGACC-AGCCGT-AAACCCCCC Caloplaca_interfulgens_Czech_Republic_2 CTGAGAGAG--GGACTTCGCGTCCCCG-GGGGGGCTTCGGCTCTCTACCTCTTTCACCC-GTGCTTATAAATCTCTGTTGCTTTGGCGAGCGCCGGGGTGC-CTC-CCGC-CTCGGCCCTGACCC-TAGGGTCGGTGCGTTCTCGCCAGAGCCC----CCTCAGCATTCTCTTTATTTAGTGACGTCCGAGTATC-ATCATAATAT-AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGTATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTT-GCTTGGTATTGAGCTTTT-CGCC--GGAGCCGGCGTGCTCGAAAA-TTAGTGGCGGTCCAGGGAGACTT-CAAGCGCAGTA-AAAC-TTT-CCGCTTTCGAGGTCCTCGCCTG-TGACC-AGCCGT-AAACCCCCC Caloplaca_ferrarii_s.lat._Czech_Republic_2 CTGAGAGAG--GGACCTCGCGTCCCCC-GGGGGG-TACGGCCCTCCACCTCTTCAACCC-GTGTTTATAAACCTCTGTTGCTTTGGCGAGCGCCGGGGTGC-CTC-CCAC-CTCGGCCCTGACCC-TAGG-TCGGTGCGTTCTCGCCAGAGCCC----CC-AACCATTCTGTTTATTCAGTGACGTCCGAGTATG-ATCAAAATTT-AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTC-GCTTGGTATTGAGCTTTTACGCC--GGAGACGGCGTGCTCGAAAA-TTAGTGGCGGTCCAGGGAGACTT-CAAGCGCAGTA-AAAC-TTT-CCGCTTTCGAGGCTCTCGCCTG-TGGCC-AGCCGT-AAAGCCCCC Caloplaca_interfulgens_Southern_Russia CTGAGAGAG--GGACCTCGCGTCCCC--GGAGGGCTTCGGCTCTCTACCTCTTTAACCC-GTGCTTATAAATCTCTGTTGCTTTGGCGAGCGCCGGGGTGC-CTC-CCGC-CCCGGCCCTGACCC-TAGGGTCGACGCGTTCTCGCCAGAGCCCGGGCCCTCAGCATTCTCTTTATTTAGTGACGTCCGAGTATC-ACCAAAATAT-AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTT-GCTTGGTATTGAGCTTTT-CGCC--GGAGACGGCGTGCTCGAAAA-TTAGTGGCGGTCCAGGGAGACTT-CAAGCGCAGTA-AAAC-TTT-CCGCTTTCGAGGTCCTCGCCTGGTGACC-AGCCGT-AAAACCCCC Caloplaca_interfulgens_Czech_Republic_1 CTGAGAGAG--GGACCTCGCGTCCCC--GGAGGGCTTCGGCTCTCTACCTCTTTAACCC-GTGTTTATAAATCTCTGTTGCTTTGGCGAGCGCCGGGGTGC-CTC-CCGCCCCCGGCCCTGACCC-TAGGGTCGGTGCGTTCTCGCCAGAGCCC----TCTCAGCATTCTCTTTATTTAGTGACGTCCGAGTATT-ACCAAAATAT-AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTT-GCTTGGTATTGAGCTTTT-CGCC--GGAGACGGCGTGCTCGAAAA-TTAGTGGCGGTCTAGGGAGACTT-CAAGCGCAGTA-AAAC-TTT-CCGCTTTCGAGGTCCTCGCCTG-TGACC-AGCCGT-AAACCCCCC Caloplaca_interfulgens_Slovakia_2 CTGAGAGAG--GGACCTCGCGTCCCC--GGGGGGCTTCGGCCTTCTATCTCTTTCACCC-GTGCTTATAAATCTCTGTTGCTTTGGCGAGCGCCGGGGTGT-CTC-CCGCACTCGGCCCTGACCC-TAGGGTCGGTGCGTTCTCGCCAGAGCCC----CCTCAGCAATCTCTTTATTTAGTGACGTCCGAGTATC-ATCAAAATAT-AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTT-GCTTGGTGTTGAGCTTTT-CGCC--GGAGACGGCGTGCTCGAAAA-TTAGTGGCGGTCCAGGGAGACTT-CAAGCGCAGTA-AAAC-TTT-CCGCTTTCGAGGTCTTCGCCTG-TGACC-AGCCGT-AAACCCCCC Caloplaca_interfulgens_Slovakia_1 CCGAGAGAG--GGGCCTCGCGTCCCT--GGGGGGCTTCGGCCCTCTATCTCTTTCACCC-GTGCTTATAAATCTCTGTTGCTTTGGCGAGCGCCGGGGTGC-CTC-CCGC-TTCGGCCCTGACCC-TAGGGTCGGTGCGTTCTCGCCAGAGCCC----CCTCAGCATTCTCCTTATTTAGTGACGTCCGAGTATC-ATCAAAATAT-AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTT-GCTTGGTATTGAGCTTTT-CGCC--GGAGACGGCGTGCTCGAAAA-TTAGTGGCGGTCCAGGGAGACTT-CAAGCGCAGTA-AAAC-TTT-CCGCTTTCGAGGTCCTCGCCTG-TGACC-AGCCGT-AAACCCCCC Caloplaca_ferrarii_s.lat._Czech_Republic_3 CTGAGAGAG--GGACCTCGCGTCCCCC-GGGGGGCTTCGGCCCTCCACCTCTTCAACCC-GTGTTTATAAACCTCTGTTGCTTTGGCGAGCGCCGGGGTGC-CTC-CCMC-CTCGGCCCTGAMCC-TAGGA--GGTGCGTTCTCGCCAGAACCC----CC-AACCATTCTGTTTATTCWSTGACGTCCGAGTATG-ATCAAAATTT-AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTC-GCTTGGTATTGAGCTTTTACGCC--GGAAACGGCGTGCTCRAAAA-TTAGKGGCGGTCCAGGGARACTT-CAAGCGCAGTA-AAAA-TTT-CCGCTTTCRAGGCTCTCGCCTG-TGGCC-AGCCGT-AAAGCCCCC Caloplaca_interfulgens_Czech_Republic_5 CTGAGAGAG--GGACCTCGCGTCCCC--GGGGGGCTTCGGCCCTCTATCTCTTTCACCC-GTGCTTATAAATCTCTGTTGCTTTGGCGAGCGCCGGGGTGT-CTC-CCGC-CTCGGCCCTGACCC-TAGGGTCGGTGCGTTCTCGCCAGAGCCC----CCTCAGCAATCTCTTTATTTAGTGGCGTCCGAGTATC-ATCAAAATAT-AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTT-GCTTGGTATTGAGCTTTT-CGCC--GGAGACGGCGTGCTCGAAAA-TTAGTGGCGGTCCAGGGAGACTT-CAAGCGCAGTA-AAAC-TTT-CCGCTTTCGAGGTCCTCGCCTG-TGACC-AGCCGT-AAACCCCCC Caloplaca_ferrarii_s.lat._Czech_Republic CTGAGAGAGAGGGACCTCGCGTCCCC--GGGGGGCTTCGGCCCTCCACCTCTTCAACCC-GTGCTTACAAACCTCTGTTGCTTTGGCGAGCGCCGGGGTGC-CTC-CCGC-CTCGGCCCCGACCC-TAGG-TCGGTGCGTTCTCGCCAGAGCCC----CCAAAGCATTCTGTTTATTCAGTGACGTCCGAGTATT-ACCACAAT---AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTT-GCTTGGTATTGAGCTTTT-CGCC--GGAGACGGCGTGCTCGAAAA-TTAGTGGCGGTCCAGGGAGACTT-CAAGCGCAGTA-AAAC-TTT-CCGCTTCCGAGGTTCTCGCCTG-TGGCC-AGCCGT-AAACCCCCC Caloplaca_ferrarii_s.lat._Czech_Republic_4 CTGAGAGAG--GGACCTCGCGTCCCCC-GGGGGGTTTCGGCCCTCCACCTCTTC-ACCC-GTGTTTATAAACCTCTGTTGCTTTGGCGAGCGCCGGGGTGC-CTC-CCTC-CTCGGCCCTGACCC-TAGG-TCGGTGCGTTCTCGCCAGAGCCC----CC-AACCATTCTGTTTATTCAGTGACGTCCGAGTATG-ATCAAAATTT-AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTC-GCTTGGTATTGAGCTTTTACGCC--GGAGACGGCGTGCTCGAAAA-TTAGTGGCGGTCCAGGGAGACTT-CAAGCGCAGTA-AAAC-TTT-CCGCTTTCGAGGCTCTCGCCTG-TGGCC-AGCCGT-AAAGCCCCC Caloplaca_sp._Southern_Russia CTGAGAGAG--GGACCTCGCGTCCCCC-GGGGGGCTTCGGCCCCCCACCTCTTCAACCC-GTGTTTATAAACCTCTGTTGCTTCGGCGAGCGCCGGGGTGC-CTC-CCAC-CTCGGCCCTGACCC-TAGG-TCAGTGCGTTCTCGCCAGAGCCC----CC-AACCATTCTGTTTATTCAGTGACGTCCGAGTATG-ATCAAAATTT-AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTC-GCTTGGTATTGAGCTTTT-CGCC--GGAGACGGCGTGCTCGAAAA-TTAGTGGCGGTCCAGGGAGACTT-CAAGCGCAGTA-AAAC-TTTTCCGCTTT-GAGGCTCTCGCCTG-TGGCC-AGCCGT-AAACCCCCC ; END; BEGIN TREES; Title 'Trees from "Caloplaca_interfulgens.nex"'; LINK Taxa = Taxa; TRANSLATE 1 Caloplaca_trachyphylla_EU639651, 2 Xantoria_elegans_EU639642, 3 Caloplaca_ferrarii_s.lat._HQ699662, 4 Caloplaca_crenulatella_s.lat._HQ699658, 5 Caloplaca_ferrarii_s.lat._HQ699657, 6 Caloplaca_aquensis_HQ699656, 7 Caloplaca_borysthenica_HQ699655, 8 Caloplaca_crenulatella_s.lat._HQ699654, 9 Caloplaca_ferrarii_s.lat._HQ699653, 10 Caloplaca_aquensis_HQ699652, 11 Caloplaca_ferrarii_s.lat._HQ699651, 12 Caloplaca_tominii_HQ699650, 13 Caloplaca_borysthenica_HQ699649, 14 Caloplaca_diffusa_HQ699648, 15 Caloplaca_diffusa_HQ699647, 16 Caloplaca_crenulatella_s.lat._HQ699645, 17 Caloplaca_lactea_HQ699644, 18 Caloplaca_ferrarii_s.lat._HQ699643, 19 Caloplaca_crenulatella_s.lat._HQ699642, 20 Caloplaca_interfulgens_HQ699640, 21 Caloplaca_interfulgens_HQ699639, 22 Caloplaca_erichansenii_HQ699638, 23 Caloplaca_ferrarii_s.lat._HQ699637, 24 Caloplaca_ferrarii_s.lat._HQ699636, 25 Caloplaca_crenulatella_s.lat._HQ699635, 26 Caloplaca_marmorata_HQ699631, 27 Caloplaca_marmorata_HQ699630, 28 Caloplaca_marmorata_HQ699629, 29 Caloplaca_crenulatella_HQ699628, 30 Caloplaca_marmorata_HQ699627, 31 Caloplaca_tominii_HQ699626, 32 Caloplaca_tominii_HQ699625, 33 Caloplaca_lactea_Italy, 34 Caloplaca_interfulgens_Turkey_1, 35 Caloplaca_interfulgens_Turkey_3, 36 Caloplaca_interfulgens_Turkey_2, 37 Caloplaca_lactea_Greece, 38 Caloplaca_interfulgens_Czech_Republic_3, 39 Caloplaca_interfulgens_Czech_Republic_4, 40 Caloplaca_interfulgens_Czech_Republic_2, 41 Caloplaca_ferrarii_s.lat._Czech_Republic_2, 42 Caloplaca_interfulgens_Southern_Russia, 43 Caloplaca_interfulgens_Czech_Republic_1, 44 Caloplaca_interfulgens_Slovakia_2, 45 Caloplaca_interfulgens_Slovakia_1, 46 Caloplaca_ferrarii_s.lat._Czech_Republic_3, 47 Caloplaca_interfulgens_Czech_Republic_5, 48 Caloplaca_ferrarii_s.lat._Czech_Republic, 49 Caloplaca_ferrarii_s.lat._Czech_Republic_4, 50 Caloplaca_sp._Southern_Russia; TREE Bayesian_inference_Interfulgens = (1:0.776734,2:0.767596,((((3:0.033867,48:0.037681)0.72:0.036485,(9:0.192269,18:0.079282)0.63:0.037341)0.73:0.042238,11:0.229524)0.94:0.073306,((((((4:0.089524,8:0.058629)1.00:0.109648,16:0.118167)0.87:0.037736,(5:0.017709,(23:0.017666,24:0.035502)1.00:0.052674)0.97:0.035974)0.97:0.037006,(7:0.017822,13:0.018817)1.00:0.089819,41:0.035887,46:0.087191,49:0.052112)0.57:0.03502,50:0.079953)0.99:0.073868,(22:0.084505,29:0.117946)1.00:0.094569)0.99:0.119322,(6:0.017278,10:0.018285)1.00:0.326933,(((12:0.078291,32:0.066165)0.75:0.041517,31:0.078502)1.00:0.104341,(((20:0.017501,((21:0.034043,44:0.0522)0.96:0.038934,(35:0.034135,38:0.034872,39:0.017172,47:0.017344)0.97:0.035898)1.00:0.056895,(34:0.033895,36:0.045544)0.99:0.044147,45:0.105887)0.85:0.044298,40:0.110057)0.89:0.053835,(42:0.077075,43:0.085588)1.00:0.07898)0.95:0.071081)1.00:0.135572,(14:0.017862,15:0.017001)1.00:0.327007,((17:0.017168,33:0.017361,37:0.017221)1.00:0.242889,(((26:0.133106,28:0.204108)0.68:0.04105,27:0.0397)0.92:0.054719,30:0.190555)0.97:0.077758)0.92:0.073748,(19:0.091788,25:0.260143)0.74:0.08382)1.00:0.49035); END;