#NEXUS BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=23; TAXLABELS Caloplaca_demissa_353961 Caloplaca_haematites_JN641769 Caloplaca_aractina_GU723413 Caloplaca_areolata_Spain Caloplaca_emili_Bulgaria_Rhodopes Caloplaca_emili_France Caloplaca_emili_Bulgaria Caloplaca_areolata_Montenegro Caloplaca_emili_Czech_Republic_1 Caloplaca_emili_Czech_Republic_2 Caloplaca_emili_Greece Caloplaca_areolata_Croatia Caloplaca_fuscoatroides_JN813404 Caloplaca_atroflava_HQ611276 Caloplaca_tianshanensis_GU552276 Caloplaca_atroflava_HQ234606 Caloplaca_ceracea_HQ234600 Caloplaca_ceracea_HQ234603 Caloplaca_fuscoatroides_HQ234599 Caloplaca_xerica_JN641792 Caloplaca_soralifera_JN641780 Caloplaca_teicholyta_EU639593 Caloplaca_erythrocarpa_EU639591 ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=501; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Caloplaca_demissa_353961 TCGAGAGGGGGG-TCTCGCGCCCC-AGGGG-TTCTGCCCCGCACCTTTCCACCCTTT-GTGTACCTTCCATTGTTGCTTTGGCGGGCCCCGGGGCT-TT--CCCGGCGCTGGTCCCCTTCTGGGGGTTCGCGAGCGCCCGTC-AGAGACCCGTTAAAAA-TCTGTTT-TATCAGTGCAGTCCGAGTCGAAACAAAAATCAATC-AAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCAAAGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCCTTGCTTGGTACTGGGTGCTCGCCCCCGC-----------GGAGCGCGCCCGAAATCTAGTGGCGGTCCAGGTGGACTTCAAGCGCAGCGAACTATTGTCCGCTTT-GGAAGCCTTCTGCCTGTGG Caloplaca_haematites_JN641769 CCGAGAGGGGGGGTTTCGCGCCCC-AGGGG-CTTCGCCCCGTACCTTTCCACCCTTT-GTGTATCTTCCACTGTTGCTTTGGCGGGCCCCGGGGCTCTTGTCCCGGCGCCG-CCCCCCACCAGGGGCTCGCGAGCGCCCGCC-GAAGGCCCATGAAAAT-CCTGTCT--TTCAGTGCAGTCTGAGTAT--ACGAGAATGAA-CTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTACTCCGGGGGGCATGCCTGTTCGAGCGTCATTAC-TCCCTCAAGCAATGCTTGGTATTGGGTGCTCGCCCTTCCT----TCCGGGGGGGCGCGCCCGAAATTCAGTGGCGGTCCCGGCGGACTTCAAGCGTAGTAAA-TACC--CCGCTTT-GGAAGCCTTTCG------- Caloplaca_aractina_GU723413 CCGAGAGGGGGGCCCCAGCGCCCC-AGGGG-TCGTGCCCCGCACCTTTCCACCCTTT-GTGTATCTTCCACTGTTGCTTTGGCGGGCCCCGGGGCTCACGCCCCGGCGCTG-CCCCCCACAAGGGGCTCGCGAGCGCCCGCC-GAAGGCCCATCAAAAC-CCTGTTT--TTCAGTGCAGTCTGAGTCG--ACGAGAATAAA-CTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACATCCCTCAAGCACTGCTTGGTATTGGGTGCTCGCCCTCCCT----TCCGGGGGGGCGCGCCCGAAATTCAGTGGCGGTCCCGGTGGACTTCAAGCGCAGTAAA-TATT--TCGCTTT-GGAAGCCTTCTGCCGGTGG Caloplaca_areolata_Spain CCGAGAGGGGGGCTTACGCGCCCC-AGGGG-TTCCGCCCCGCACCTTTCTACCCTGT-GTGTATTTTCCACTGTTGCTTTGGCGGGCCCCGGGGCTCACGTCCCGGCGCTG-CTCCT-ATACGGGGTTCGCGAGCGCCCGCC-GAAGGCCTATCATCAA-TCTGTTT--ATCAGGGCCGTCTGAGTAT--ATGAAAATTAATCTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACATCCCTCAAGCACTGCTTGGTATTGGGTGTTCGCC-TTCC-----------GGGGCGCGCCCGAAATTCAGTGGCGGTCTCGGTAGACTTCAAGCGTAGTAAA-TATT--CCGCTTT-GGAAGCC-TCTGCCGGCGG Caloplaca_emili_Bulgaria_Rhodopes CCGAGAGGGGGGCTCACGCGTCCC-AGGGG-TTCTGCCCCGCACCTTTCTACCCTTTTGTGCATCTTCCACTGTTGCTTTGGCGGGTCCCGGGGCTTCCGTCCCGGCGCCA-CCCCTTCTGAGGGGCTCGCGAGCGCCCGCC-GAAGGCCTATCATCAA-TCTGTTC--ATCAGGGCAGTCTGAGTAT--ACGAAAATTAATCTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACATCCCTCAAGCATTGCTTGGTATTGGGTGTTCGCC-TTCC--------GGGGGGG---------------------------------------------------------------------------------- Caloplaca_emili_France CCGAGAGGGGGGCTCACGCGTCCC-AGGGGTTTCTGCCCCGCACCTTTCTACCCTTTTGTGCATCTTCCACTGTTGCTTTGGCGGGTCCCGGGGCTTCCGTCCCGGCGCCA-CCCCTTCTGAGGGGCTCGCGAGCGCCCGCC-GAAGGCCTATCATCAA-TCTGTTC--ATCAGGGCAGTCTGAGTAT--ACGAAAATTAATCTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACATCCCTCAAGCATTGCTTGGTATTGGGTGTTCGCC-TTCC-------GGGGGGGGC--------------------------------------------------------------------------------- Caloplaca_emili_Bulgaria ------------------------------------------ACCTTTCTACCCTTTTGTGR-TCTTCCACTGTTGCTTTGGCGGGTCCCGGGGCTTCCGTCCCGGCGCCA-CCCCTTCTGAGGGGCTCGCGAGCGCCCGCC-GAARGCCTATCATCAA-TCTGTTC--ATCAGGGCAGTCTGAGTAT--ACGAAAATTAATCTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCTAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACATCCCTCAAGCATTGCTTGGTATTGGGTGTTCGCC-TTCCC----------GGGGCGCGCCCGAAATTCAGTGGCGGTCTCGGTAGACTTCAAGCGTAGTAAA-TATT--CCGCTTT-GGAAGCC-TCTGCCGGCGG Caloplaca_areolata_Montenegro CCGAGAGGGGGGCTTACGCGCCCC-AGGGG-TTCCGCCCCGCGCCTTTCTACCCTGT-GTGTATTTTCCACTGTTGCTTTGGCGGGCCCCGGGGCTCACGTCCCGGCGCTG--CCCTTGTACGGGGTTCGCGAGCGTCCGCC-GAAGGCCTATCATCAA-TCTGTTT--TTCAGTGCAGTCTGAGTAT--ACGAAAATCAATC-AAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACATCCCTCAAGCACTGCTTGGTATTGGGTGTTCGCC-CTCC-----------GGGGCGTGCCTGAAATTCAGTGGCGGTCTCGGTAGACTTCAAGCGCAGTAAA-TATT--CCGCTTT-GGAAGCC-TCTGCCGACGG Caloplaca_emili_Czech_Republic_1 CCGAGAGGGGGGCTCACGCGTCCC-AGGGG-TTCTGCCCCGCACCTTTCTACCCTTTTGTGCATCTTCCACTGTTGCTTTGGCGGGTCCCGGGGCTTCCGTCCCGGCGCCA-CCCCTTCTGAGGGGCTCGCGAGCGCCCGCC-GAAGGCCTATCATCAA-TCTGTTC--ATCAGGGCAGTCTGAGTAT--ACGAAAATTAATCTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACATCCCTCAAGCATTGCTTGGTATTGGGTGTTCGCC-TTCC-------GGGGGGGG---------------------------------------------------------------------------------- Caloplaca_emili_Czech_Republic_2 CCGAGAGGGGGGCTCACGCGTCCC-AGGGG-TTCTGCCCCGCACCTTTCTACCCTTTTGTGCATCTTCCACTGTTGCTTTGGCGGGTCCCGGGGCTTCCGTCCCGGCGCCA-CCCCTTCTGAGGGGCTCGCGAGCGCCCGCC-GAAGGCCTATCATCAA-TCTGTTC-AATCAGGGCAGTCTGAGTAT--ACGAAAATTAATCTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACATCCCTCAAGCATTGCTTGGTATTGGGTGTTCGCC-TTCC-------GGGGGGGG---------------------------------------------------------------------------------- Caloplaca_emili_Greece CCGAGAGGGGGGCTCACGCGTCCC-AGGGG-TTCTGCCCCGCACCTTTCTACCCTTTTGTGCATCTTCCACTGTTGCTTTGGCGGGTCCCGGGGCTTCCGTCCCGGCGCCA-CCCCTTCTGAGGGGCTCGCGAGCGCCCGCC-GAAGGCCTATCATCAA-TCTGTTC--ATCAGGGCAGTCTGAGTAT--ACGAAAATTAATCTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACATCCCTCAAGCATTGCTTGGTATTGGGTGTTCGCC-TTCCC-------TGTGGGG---------------------------------------------------------------------------------- Caloplaca_areolata_Croatia CCGAGAGGGGGGCTTACGCGCCCC-AGGGG-TTCCGCCCCGCGCCTTTCTACCCTGT-GTGTATTTTCCACTGTTGCTTTGGCGGGCCCTGGGGCTCACGTCCCGGCGCTG-CCCCT-GTACGGGGTTCGCGAGCGTCCGCC-GAAGGCCTATCATCAA-TCTGTTT--TTCAGTGCAGTCTGAGTAT--ACGAAAATCAATC-AAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACATCCCTCAAGCACTGCTTGGTATTGGGTGTTCGCC-TTCCCC-----TGGGGGGGCGTGCCTGAAATTCAGTGGCGGTCTCGGTAGACTTCAAGCGCAGTAAA-TATT--CCGCTTT-GGAAGCC-TCTGCCGACGG Caloplaca_fuscoatroides_JN813404 CCGAGAGGGGGGCTCACGCGCCCC-AGGGG-TTCTGCCCCGCACCTTTCCACCCTAT-GTGTATCTTCTACTGTTGCTTTGGCGGGCCCCGGGGCTTATTTCCCGGCGCTG-CCCCT-GCAAGGAGCTCGCGAGCGCCCGCC-GAAGGCCTATCATCAA-TCTGTTT-TATCA-TGCAGTCTGAGTAT--ACGAAAATCAATT-AAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCACTGCTTGGTATTGGGTGCTCGCCATCCC-----TCTAGGGTGGTGCGCCCGAAATTCAGTGGCGGTCTCGGTAGACTTCAAGCGTAGTAAA-TATT--CCGCTTT-GGAAGCC-TCTACCGGCGG Caloplaca_atroflava_HQ611276 CCGAGAGGGGGGCTCACGCGCCCC-AGGGG-TTCTGCCCCGCACCTTTCCACCCTAT-GTGTATCTTCCATTGTTGCTTTGGCGGGCCCCGGGGCTCACGTCCCGGCGCTG-CCCCT-AGAAAGGGCTCGCGAGCGCCCGCC-GAAGGCCCATTATCAA-TCTGTTT--ATCAGTGCCGTCCGAGTAC--AAGAAAATCAATC-AAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCACTGCTTGGTATTGGGTGCCCGCC-TTCC-----------GGGGCGCGCCCGAAATTCAGTGGCGGTCTCGGTAGACTTCAAGCGTAGTAAA-TATT--CCGCTTT-GGAAGC-TTCTACCGGTGG Caloplaca_tianshanensis_GU552276 CCGAGAGGGGGGCTCACGCGCCCC-AGGGG-TTCTGCCCCGCACCTTTCTACCCTTT-GTGTATCTTCCACTGTTGCTTTGGCGGGTCCCGGGGCCCAGGTCCCGGCGCTGGCCCCTTATCAGGGGTTCGCGAGCGCCCGCC-GAAGGCCCATCATAAA-CCTGTTT-TATCAGTGCAGTCTGAGTAT--ACGAAAATCAAAC-AAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACATCTCTCAAGCACTGCTTGGTATTGGGTGCTCGCCCTTTC-----TTCCGGGGGGCGCGCCCGAAATTTAGTGGCGGTCTCGGTGGACTTCAAGCGCAGTAAA-TATT--CCGCTTT-GGAAGCCTTCCGCCGG--- Caloplaca_atroflava_HQ234606 CCGAGAGGGGG-CTCAC?CGCCC--AGGGG-TTCTGCCCCGCACCTTTCCACCCTAT-GTGTATCTTCCACTGTTGCTTTGGCGGGCCCCGGGGCTCACGTCCCGGCGCTG-CCCCT-ATAAGGGGTTCGCGAGCGCCCGCC-GAAGGCCCATTATCAA-TCTGTTT--ATCAGTGCCGTCTGAGTAC--ATGAAAATCAATC-AAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCACTGCTTGGTA?TGGGTGCTCGCC-TTCC-----------GGGGCGCGCCCGAAATTCAGTGGCGGTCTCGGTGGACTTCAAGCGTAGTAAA-TATT--CCGCTTT-GGAAGCC-TCTGCCGGCGG Caloplaca_ceracea_HQ234600 CCGAGAGGGGGGCTCACGCGCCCC-AGGGG-TTCTGCCCCGCATCTTTCCACCCTAT-GTGTATCTTCCACTGTTGCTTTGGCGGGCCCCGGGGCTCATTTCCCGGCGCTG-CCCCT-GCAAGGGGCTCGCGAGCGCCCGCC-GAAGGCCTATCATCAA-TCTGTTT-TATCA-TGCAGTCTGAGTAT--ACGAAAATCAATT-AAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCACTGCTTGGTATTGGGTGCTCGCCATCCC-----TCTAGGGTGGCGCGCCCGAAATTCAGTGGCGGTCTCGGTAGACTTCAAGCGTAGTAAA-TATT--CCGCTTT-GGAAGCC-TCTGCCGGCGG Caloplaca_ceracea_HQ234603 CCGAGAGGGGGGCTCACGCGCCCC-AGGGG-TTCTGCCCCGCATCTTTCCACCCTAT-GTGTATCTTCCACTGTTGCTTTGGCGGGCCCCGGGGCTCATTTCCCGGCGCTG-CCCCT-GCAAGGGGCTCGCGAGCGCCCGCC-GAAGGCCTATCATCAA-TCTGTTT-TATCA-TGCAGTCTGAGTAT--ACGAAAATCAATT-AAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCACTGCTTGGTATTGGGTGCTCGCCATCCC-----TCTAGGGTGGCGCGCCCGAAATTCAGTGGCGGTCTCGGTAGACTTCAAGCGTAGTAAA-TATT--CCGCTTT-GGAAGCC-TCTGCCGGCGG Caloplaca_fuscoatroides_HQ234599 CCGAGAGGGGGGCTCACGCGCCCC-AGGGG-TTCTGCCCCGCACCTTTCCACCCTAT-GTGTATCTTCCACTGTTGCTTTGGCGGGCCCCGGGGCTTATTTCCCGGCGCTG-CCCCT-GCAAGGGGCTCGCGAGCGCCCGCC-GAAGGCCTATCATCAA-TCTGTTT-TATCA-TGCAGTCTGAGTAT--ACGAAAATCAATTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCACTGCTTGGTATTGGGTGCTCGCCATCCC-----TCTAGGGTGGCGCGCCCGAAATTCAGTGGCGGTCTCGGTAGACTACAAGCGTAGTAAA-TATT--CCGCTTT-GGAAGCC-TCTGCCGGCGG Caloplaca_xerica_JN641792 CCGAGAGGGGGGCTCACGCGCCCC-AGGGG-TTCTGCCCCGCACCTTTCCACCCTAT-GTGTATCTTCCACTGTTGCTTTGGCGGGCTCCGGGGCTCACGTTTCGGCGCTG-CCCCT-CC-CGGGGTTCGCGAGCGCCCGCC-GAAGGCCCATTATCAAACCTGTTT--ATCAGTGCAGTCTGAGTAT--GTGAAAATCAATC-AAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCACCGCTTGGTATTGGGTGCTCGTC-TT----------GGGGGGGCGCGCCCGAAATTCAGTGGCGGTCTCGGTGGACTTCAAGCGCAGTAAA-TATT--CCGCTTT-GGAAGCC-TCTACCGGTGG Caloplaca_soralifera_JN641780 CCGAGAGGGGGGCTCACGCGCCCC-AGGGG-TTCTGCCCCGCACCTTTCCACCCTAT-GTGTATCTTCCCCTGTTGCTTTGGCGACCCCGGGGGCTC-CGTCCCGGCGCTG-CCCCT-ATATAGGGCTCGCGAGCGCCCGCC-GAAGGCCCACTATCAA-TCTGTTT--ATCAGTGCCGTCTGAGTAT--AAGAAAATCAATC-AAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATACCTGTTCGAGCGTCATTACACACCTCAAGCACTGCTTGGTATTGGGTGCCCGCCCTC-----------GAGGGGCGCGCCCGAAATCCAGTGGCGGTCCCGGTGGACTTCAAGCGTAGTAAA-TATT--CCGCTTTTGGAAGCC-TCCGCCGGCGG Caloplaca_teicholyta_EU639593 CCGAGAGGGGGGCTAACGCGCCCC-AGGGG-TTCTGCCCCGCACCTTTCTACCCTAT-GTGTATCTTCCACTGTTGCTTTGGCGGGCCCCGGGGTTCACCTCCCGGCGTCG-TCCCT-GTAAGGGGCTGGCGAGCGCCCGCCCGAAGGCCCATCATCAA-TCTGTTT--ATCAGTGTGGTCTGAGGAT--ACGAAAATCAATC-AAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCACTGCTTGGTATTGGGTGCTCGC--TTCCCCTC-TGCGGGGTGGCGCGCCCGAAATTCAGTGGCGGTCTCGGTGGACTTCAAGCGTAGTAAA-TATT--CCGCTTT-GGAAGAC-TCCGCCGGTGG Caloplaca_erythrocarpa_EU639591 CCGAGAGGGGGGCTCACGCGCCCC-AGGGG-GTTTGCCCCGCACCTTTCCACCCTAT-GTGTATCTTCCAGTGTTGCTTTGGCGGGCCCCGGGGTTCACCTCCCGGCGCCG-TCCCT-GTAAGGGGCCGGTGAGCGCCCGCC-GAAGGCCTATCATCAA-TCTGTTTATATCGGTGTGGTCTGAGGAT--ACGAAAATAAATC-AAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCACTGCTTGGTATTGGGTGCTCGC--TTCCCCTCCTGCGGGGTGGCGCGCCCGAAATTCAGTGGCGGTCCCGGCGGACTTCAAGCGTAGTAAA-TATT--CCGCTTT-GGAAGAC-TCTGCCCGTGG ; END; BEGIN TREES; Title 'Trees from "Caloplaca_emili.nex"'; LINK Taxa = Taxa; TRANSLATE 1 Caloplaca_demissa_353961, 2 Caloplaca_haematites_JN641769, 3 Caloplaca_aractina_GU723413, 4 Caloplaca_areolata_Spain, 5 Caloplaca_emili_Bulgaria_Rhodopes, 6 Caloplaca_emili_France, 7 Caloplaca_emili_Bulgaria, 8 Caloplaca_areolata_Montenegro, 9 Caloplaca_emili_Czech_Republic_1, 10 Caloplaca_emili_Czech_Republic_2, 11 Caloplaca_emili_Greece, 12 Caloplaca_areolata_Croatia, 13 Caloplaca_fuscoatroides_JN813404, 14 Caloplaca_atroflava_HQ611276, 15 Caloplaca_tianshanensis_GU552276, 16 Caloplaca_atroflava_HQ234606, 17 Caloplaca_ceracea_HQ234600, 18 Caloplaca_ceracea_HQ234603, 19 Caloplaca_fuscoatroides_HQ234599, 20 Caloplaca_xerica_JN641792, 21 Caloplaca_soralifera_JN641780, 22 Caloplaca_teicholyta_EU639593, 23 Caloplaca_erythrocarpa_EU639591; TREE Bayesian_inference_Emili = (1:0.573965,(2:0.301614,3:0.139912)0.97:0.103276,((((4:0.058942,(8:0.021908,12:0.021506)1.00:0.118368)0.95:0.070257,(5:0.012421,6:0.012191,7:0.035776,9:0.012062,10:0.012977,11:0.035372)1.00:0.192444)0.99:0.074217,((((13:0.05139,19:0.020977)0.78:0.01954,(17:0.009943,18:0.010049)0.95:0.022405)1.00:0.098537,(22:0.055218,23:0.136461)1.00:0.151674)0.97:0.063357,(((14:0.084217,21:0.187409)1.00:0.06103,16:0.017746)0.96:0.039707,20:0.168093)0.71:0.034197)0.75:0.039153)0.93:0.055326,15:0.149081)0.96:0.082357); END;