#NEXUS [written Thu Feb 28 19:57:04 EST 2013 by Mesquite version 2.75 (build 566) at Simba.local/10.0.0.5] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=453; TAXLABELS Acanthomoeba_polyphaga_Mimivirus Acidothermus_cellulolyticus Acidovorax_avenae Acidovorax_avenae_2 Acinetobacter_baumannii Acyrthosiphon_pisum_secondary_endosymbiot_phage_1 Aeropyrum_pernix Ajellomyces_capsulatus Ajellomyces_capsulatus_2 Ajellomyces_dermatitidis Ajellomyces_dermatitidis_2 Alkalilimnicola_ehrlichei Alkalilimnicola_ehrlichei_2 Alkalilimnicola_ehrlichei_3 Alteromonas_macleodii Aquifex_aeolicus Arthrobacter_sp_FB24 Aspergillus_brevipes Aspergillus_fumigatus Aspergillus_fumigatus_2 Aspergillus_fumigatus_3 Aspergillus_giganteus Aspergillus_nidulans Aspergillus_viridinutans_FRR0577 Azotobacter_vinelandii Bacillus_sp. Bacillus_subtilis Bacteriophage_Aaphi_23_Haemophilus_phage_Aaphi_23 Bacteriophage_APSE_2 Bacteriophage_APSE_5 Bacteriophage_of_Candidatus_Hamiltonella_defensa_5ATac_endosymbiot_of_Acyrthosiphon_pisum Bathycoccus_tropical_Atlantic_Metagenome Bathycoccus_tropical_Atlantic_PCRproduct Batrachochytrium_dendrobatidis Batrachochytrium_dendrobatidis_2 Batrachochytrium_dendrobatidis_3 Batrachochytrium_dendrobatidis_4 Batrachochytrium_dendrobatidis_5 Botrytis_cinerea Burkholderia_sp. Burkholderia_cenocepacia Burkholderia_vietnamiensis Candida_glabrata Candida_parapsilosis Candida_tropicalis Candida_tropicalis_2 Candidatus_Desulforudis_audaxviator Candidatus_Methanoregula_boonei Capsaspora_owczarzaki Capsaspora_owczarzaki_2 Capsaspora_owczarzaki_3 Carboxydothermus_hydrogenoformans Chilo_iridescent_virus Chlamydomonas_eugametos Chlamydomonas_moewusii Chlamydomonas_moewusii_2 Chlamydomonas_reinhardtii Chlorella_virus_PbCV_NY2A Chlorella_virus_PbCV_NY2A2 Chlorobium_chlorochromatii Chlorochromatium_aggregatum Chloroflexus_aurantiacus Clostridium_botulinum_phage_C_St Clostridium_botulinum_phage_D Clostridium_kluyveri Clostridium_thermocellum Clostridium_thermocellum_2 Coelomomyces_stegomyiae Corynebacterium_phage_P1201 Costelytra_zealandica_iridescent_virus Coxiella_burnetii Coxiella_burnetii_2 Coxiella_burnetii_3 Coxiella_burnetii_4 Crocosphaera_watsonii Crocosphaera_watsonii_2 Crocosphaera_watsonii_3 Cryptococcus_bacillisporus Cryptococcus_bacillisporus_2 Cryptococcus_gattii Cryptococcus_laurentii Cryptococcus_neoformans Cryptococcus_neoformans_2 Cryptococcus_neoformans_3 Cyanothece_sp_ATCC_51142 Cyanothece_sp_CCY0110 Cyanothece_sp_CCY01102 Debaryomyces_hansenii Debaryomyces_hansenii_2 Deinococcus_geothermalis Deinococcus_radiodurans Deinococcus_radiodurans_2 Desulfitobacterium_hafniense Desulfitobacterium_hafniense_2 Desulfovibrio_vulgaris Dictyoglomus_thermophilum Dictyostelium_discoideum DnaB_Nostoc_punctiforme Emericella_nidulans Emericella_nidulans_2 Enterobacteria_phage_Min_27 Ferroplasma_acidarmanus Ferroplasma_acidarmanus_2 Ferroplasma_acidarmanus_3 Ferroplasma_acidarmanus_4 Floydiella_terrestris Frankia_sp. Frankia_alni Gemmata_obscuriglobus Gemmata_obscuriglobus_2 Gloeobacter_violaceus Gloeobacter_violaceus_2 Gloeobacter_violaceus_3 Guillardia_theta_Gth_DnaB Haloarcula_marismortui Haloarcula_marismortui_2 Haloarcula_marismortui_3 Haloarcula_marismortui_4 Halobacterium_salinarum Halobacterium_salinarum_2 Halobacterium_sp_NRC_1 Haloferax_volcanii Haloquadratum_walsbyi Haloquadratum_walsbyi_10 Haloquadratum_walsbyi_11 Haloquadratum_walsbyi_12 Haloquadratum_walsbyi_13 Haloquadratum_walsbyi_14 Haloquadratum_walsbyi_15 Haloquadratum_walsbyi_2 Haloquadratum_walsbyi_3 Haloquadratum_walsbyi_4 Haloquadratum_walsbyi_5 Haloquadratum_walsbyi_6 Haloquadratum_walsbyi_7 Haloquadratum_walsbyi_8 Haloquadratum_walsbyi_9 Halorhabdus_utahensis Halorhabdus_utahensis_2 Halorhodospira_halophila Heterosigma_akashiwo_virus Histoplasma_capsulatum Invertebrate_iridescent_virus_6 Kazachstania_exigua Kineococcus_radiotolerans Kluyveromyces_lactis Kluyveromyces_lactis_2 Lactococcus_phage_KSY1 Listonella_pelagia_phage_phiHSIC Lodderomyces_elongisporus Magnetospirillum_magnetotacticum Methanococcus_aeolicus Methanococcus_aeolicus_2 Methanococcus_aeolicus_3 Methanococcus_aeolicus_4 Methanococcus_aeolicus_5 Methanococcus_aeolicus_6 Methanococcus_jannaschii Methanococcus_jannaschii_10 Methanococcus_jannaschii_11 Methanococcus_jannaschii_12 Methanococcus_jannaschii_13 Methanococcus_jannaschii_14 Methanococcus_jannaschii_15 Methanococcus_jannaschii_16 Methanococcus_jannaschii_17 Methanococcus_jannaschii_18 Methanococcus_jannaschii_19 Methanococcus_jannaschii_2 Methanococcus_jannaschii_3 Methanococcus_jannaschii_4 Methanococcus_jannaschii_5 Methanococcus_jannaschii_6 Methanococcus_jannaschii_7 Methanococcus_jannaschii_8 Methanococcus_jannaschii_9 Methanoculleus_marisnigri Methanoculleus_marisnigri_2 Methanopyrus_kandleri Methanopyrus_kandleri_2 Methanopyrus_kandleri_3 Methanopyrus_kandleri_4 Methanopyrus_kandleri_5 Methanospirillum_hungateii Methanothermobacter_thermautotrophicus Methylobacterium_extorquens Methylobacterium_extorquens_2 Methylococcus_capsulatus Methylococcus_capsulatus_Bath_prophage_MuMc_02 Microcoleus_chthonoplastes Microcystis_aeruginosa Mycobacteriophage Mycobacteriophage_2 Mycobacteriophage_3 Mycobacteriophage_Bethlehem Mycobacteriophage_Bethlehem_2 Mycobacteriophage_catera Mycobacterium_avium Mycobacterium_avium_2 Mycobacterium_avium_3 Mycobacterium_bovis Mycobacterium_bovis_2 Mycobacterium_bovis_3 Mycobacterium_bovis_4 Mycobacterium_bovis_5 Mycobacterium_chitae Mycobacterium_fallax Mycobacterium_flavescens Mycobacterium_flavescens_2 Mycobacterium_flavescens_3 Mycobacterium_flavescens_4 Mycobacterium_gastri Mycobacterium_gastri_2 Mycobacterium_gastri_3 Mycobacterium_gilvum Mycobacterium_gilvum_2 Mycobacterium_gordonae Mycobacterium_intracellulare Mycobacterium_kansasii Mycobacterium_leprae Mycobacterium_leprae_2 Mycobacterium_leprae_3 Mycobacterium_leprae_4 Mycobacterium_malmoense Mycobacterium_shimodei Mycobacterium_smegmatis Mycobacterium_smegmatis_2 Mycobacterium_species Mycobacterium_species_2 Mycobacterium_species_3 Mycobacterium_species_4 Mycobacterium_thermoresistibile Mycobacterium_tuberculosis Mycobacterium_tuberculosis_2 Mycobacterium_tuberculosis_3 Mycobacterium_tuberculosis_4 Mycobacterium_tuberculosis_5 Mycobacterium_tuberculosis_6 Mycobacterium_tuberculosis_7 Mycobacterium_vanbaalenii Mycobacterium_vanbaalenii_2 Mycobacterium_xenopi Myxococcus_xanthus Natronomonas_pharaonis Natronomonas_pharaonis_2 Natronomonas_pharaonis_3 Natronomonas_pharaonis_4 Neosartorya_aurata Neosartorya_fennelliae Neosartorya_fischeri Neosartorya_glabra Neosartorya_glabra_2 Neosartorya_quadricincta Neosartorya_spinosa Nocardia_farcinica Nocardia_farcinica_2 Nocardia_farcinica_3 Nocardioides_sp_JS614 Nocardioides_sp_JS6142 Nostoc_punctiforme Nostoc_sp_PCC7120 Nostoc_sp_PCC71202 Paracoccidioides_brasiliensis Pelodictyon_luteolum Penicillium_chrysogenum Penicillium_expansum Penicillium_vulpinum Phaeosphaeria_nodorum Phaeosphaeria_nodorum_2 Phycomyces_blakesleeanus Phycomyces_blakesleeanus_2 Pichia_guilliermondii Pichia_guilliermondii_2 Pichia_stipitis Picrophilus_torridus Podospora_anserina Podospora_anserina_2 Polaromonas_naphthalenivorans Polaromonas_sp_JS666 Polaromonas_sp_JS6662 Polynucleobacter_sp_QLW_P1DMWA Porphyra_purpurea Porphyra_yezoensis Pseudomonas_aeruginosa_phage_phiEL Pseudomonas_aeruginosa_phage_phiEL2 Pseudomonas_aeruginosa_phage_phiEL3 Pseudomonas_aeruginosa_phage_phiEL4 Pseudomonas_fluorescens Pseudomonas_sp_A1_1 Pseudomonas_syringae 'Pyrenophora tritici-repentis' Pyrobaculum_arsenaticum Pyrococcus_abyssi Pyrococcus_abyssi_10 Pyrococcus_abyssi_11 Pyrococcus_abyssi_12 Pyrococcus_abyssi_13 Pyrococcus_abyssi_14 Pyrococcus_abyssi_15 Pyrococcus_abyssi_2 Pyrococcus_abyssi_3 Pyrococcus_abyssi_4 Pyrococcus_abyssi_5 Pyrococcus_abyssi_6 Pyrococcus_abyssi_7 Pyrococcus_abyssi_8 Pyrococcus_abyssi_9 Pyrococcus_furiosus Pyrococcus_furiosus_2 Pyrococcus_furiosus_3 Pyrococcus_furiosus_4 Pyrococcus_furiosus_5 Pyrococcus_furiosus_6 Pyrococcus_furiosus_7 Pyrococcus_furiosus_8 Pyrococcus_furiosus_9 Pyrococcus_horikoshii Pyrococcus_horikoshii_10 Pyrococcus_horikoshii_11 Pyrococcus_horikoshii_12 Pyrococcus_horikoshii_13 Pyrococcus_horikoshii_14 Pyrococcus_horikoshii_2 Pyrococcus_horikoshii_3 Pyrococcus_horikoshii_4 Pyrococcus_horikoshii_5 Pyrococcus_horikoshii_6 Pyrococcus_horikoshii_7 Pyrococcus_horikoshii_8 Pyrococcus_horikoshii_9 Pyrococcus_sp_GB_D Rhodospirillum_centenum Rhodothermus_marinus Roseovarius_sp_217 Saccharomyces_cariocanus Saccharomyces_castellii Saccharomyces_castellii_2 Saccharomyces_cerevisiae Saccharomyces_cerevisiae_2 Saccharomyces_cerevisiae_3 Saccharomyces_cerevisiae_4 Saccharomyces_cerevisiae_5 Saccharomyces_dairenensis Saccharomyces_exiguus Saccharomyces_pastorianus Saccharomyces_unisporus Salinibacter_sp. Salinibacter_ruber Salinibacter_ruber_2 Salinispora_arenicola Salmonella_phage_SETP12 Salmonella_phage_SETP3 Salmonella_phage_SETP32 Salmonella_phage_SETP5 Salpingoeca_rosetta Schizosaccharomyces_japonicus Shigella_flexneri Spiromyces_aspiralis Spirulina_platensis Spizellomyces_punctatus Staphylococcus_epidermidis Staphylococcus_phage_Twort Staphylothermus_marinus Staphylothermus_marinus_2 Stigeoclonium_helveticum Streptomyces_avermitilis Sulfurovum_sp_NBC37_1 Synechococcus_elongatus Synechococcus_elongatus_2 Synechococcus_sp_JA_2_3Ba Synechococcus_sp_JA_2_3Ba_2 Synechococcus_sp_JA_3_3Ab Synechococcus_sp_JA_3_3Ab_2 Synechocystis_sp_PCC6803 Synechocystis_sp_PCC68032 Synechocystis_sp_PCC68033 Thermobifida_fusca Thermobifida_fusca_2 Thermobifida_fusca_3 Thermococcus_aggregans Thermococcus_aggregans_2 Thermococcus_aggregans_3 Thermococcus_barophilus Thermococcus_fumicolans Thermococcus_fumicolans_2 Thermococcus_hydrothermalis Thermococcus_hydrothermalis_2 Thermococcus_kodakaraensis Thermococcus_kodakaraensis_10 Thermococcus_kodakaraensis_11 Thermococcus_kodakaraensis_12 Thermococcus_kodakaraensis_13 Thermococcus_kodakaraensis_14 Thermococcus_kodakaraensis_15 Thermococcus_kodakaraensis_2 Thermococcus_kodakaraensis_3 Thermococcus_kodakaraensis_4 Thermococcus_kodakaraensis_5 Thermococcus_kodakaraensis_6 Thermococcus_kodakaraensis_7 Thermococcus_kodakaraensis_8 Thermococcus_kodakaraensis_9 Thermococcus_litoralis Thermococcus_litoralis_2 Thermococcus_marinus Thermococcus_onnurineus Thermococcus_peptonophilus Thermococcus_sp_GE8 Thermococcus_sp_GE82 Thermococcus_sp_GT Thermococcus_sp_GT2 Thermococcus_sp_OGL_20P Thermococcus_thioreducens Thermococcus_zilligii Thermodesulfovibrio_yellowstonii Thermodesulfovibrio_yellowstonii_2 Thermoplasma_acidophilum Thermoplasma_acidophilum_2 Thermoplasma_volcanium Thermus_thermophilus Thermus_thermophilus_2 Thermus_thermophilus_3 Thermus_thermophilus_4 Thermus_thermophilus_5 Thermus_thermophilus_6 Thermus_thermophilus_7 Thermus_thermophilus_8 Torulaspora_globosa Torulaspora_pretoriensis Trichodesmium_erythraeum Trichodesmium_erythraeum_10 Trichodesmium_erythraeum_11 Trichodesmium_erythraeum_12 Trichodesmium_erythraeum_13 Trichodesmium_erythraeum_2 Trichodesmium_erythraeum_3 Trichodesmium_erythraeum_4 Trichodesmium_erythraeum_5 Trichodesmium_erythraeum_6 Trichodesmium_erythraeum_7 Trichodesmium_erythraeum_8 Trichodesmium_erythraeum_9 Uncinocarpus_reesii uncultured_archaeon_GZfos_10C7 uncultured_archaeon_GZfos_13E1 uncultured_archaeon_GZfos_9C4 uncultured_archaeon_Rice_Cluster_I Vanderwaltozyma_polyspora Kluyveromyces_lactis_VMA Wiseana_iridescent_virus Zygosaccharomyces_bailii Zygosaccharomyces_bisporus Zygosaccharomyces_rouxii ; END; BEGIN CHARACTERS; TITLE Intein_splicing_motifs; DIMENSIONS NCHAR=51; FORMAT DATATYPE = Protein INTERLEAVE GAP = - MISSING = -; MATRIX Acanthomoeba_polyphaga_Mimivirus SVTGDTPIITRHQTGCIDVTEDHSLLDYVYDLET--ESGSFHAGEMIVKNT Acidothermus_cellulolyticus CQPYSAPVSTPDGGHVLDVTPDHLVWQPVYDIQT---ESGEYLDGIRVHNC Acidovorax_avenae CVDDTTEALTQRGTLDMLMTPDHRVVHRVWCPIV-PGTSTWVAMPFITHNT Acidovorax_avenae_2 CVTADTWVMTDAGGHALRLTEDHLVRRDVYDVTVA--DCHAFDNGLCVHNC Acinetobacter_baumannii CFGKGTLIKLANGGKAHTFNKSHILCLKYYGFV--LDPDPFFLDDLVLHNT Acyrthosiphon_pisum_secondary_endosymbiot_phage_1 CLAKGTLVLTITGAYGVGMTADHQVLTEVYDLIN-CGPRNRFVGPLIVHNC Aeropyrum_pernix SLPPWEPIVVRRGGRSIDLTGSHSIYRFVYDLSV--EGDENFFGWILVHNS Ajellomyces_capsulatus CLAKGTQLLRYDGKEDLVVTPNHILVLMTEWAGFRVDKDQLYLDFLVLHNS Ajellomyces_capsulatus_2 CLAKGTQLLRYDGKEDLVVTPNHILVLMTEWAGFRVDKDQLYLDFLVLHNS Ajellomyces_dermatitidis CLAKGTQLLRYDGKEDLVVTPNHILVLMTEWAGFRVDKDQLYLDFLVLHNS Ajellomyces_dermatitidis_2 CLAKGTQLLRYDGKEDLVVTPNHILVLMTEWAGFRVDKDQLYLDFLVLHNS Alkalilimnicola_ehrlichei CIMAGSRLVDPRTGREIATTLTHPFLTQVYDLTV--DGTHNFVEDVCVHNT Alkalilimnicola_ehrlichei_2 CVTGDTRVLLADGGRTIRCTPEHRLRGEVFDLTV--PGNACWLDGIVSHNS Alkalilimnicola_ehrlichei_3 CVTADTWVQTADGGYRLKLTADHRVRREVYDVQV--PGINTFDNGLHAHNC Alteromonas_macleodii NIAHSTPVLTANRGEKIRCHANHEWTVKGHCIQV-DSPDGLYLKLVATHNS Aquifex_aeolicus CFIEGTEVLTKRGNWEVVATEGHEFIVKVYCVSV--PKGNIVVSVCIAGNC Arthrobacter_sp_FB24 GLALDTPIPAPKGGTSLVASDGNLWQAIRVDT-----KDSLFQGCQLTHNT Aspergillus_brevipes CLAKGTRLLRYDGIEDLVVTPNHILVLTTEWAGFRVDKDQLYLDYLVLHNS Aspergillus_fumigatus CLAKGTRLLRYDGKEDLVVTPNHILVLATEWAGFRVDKDQLYLDYLVLHNS Aspergillus_fumigatus_2 CLAKGTRLLRYDGKEDLVVTPNHILVLATEWAGFRVDKDQLYLDYLVLHNS Aspergillus_fumigatus_3 CLAKGTRLLRYDGKEDLVVTPNHILVLATEWAGFRVDKDQLYLDYLVLHNS Aspergillus_giganteus CLAKGTRLLRCDGQEDLVVTPNHILVLSTEWAGFRVDKDQLYLDYLVLHNS Aspergillus_nidulans CLANGTQLLRYDGKEDLVVTANHILVLATEWAGFRVDKDQLYLDYVVLHNS Aspergillus_viridinutans_FRR0577 CLAKGTRLLRYDGIEDLVVTPNHILVLTTEWAGFRVDKDQLYLDYLVLHNS Azotobacter_vinelandii CFAPETLVHTADGVEPIEVTAGHPFYAFVFDLKV--EGDESYMTSGLAHNG Bacillus_sp. CVTGETLLLTENGGYEIRATEWHKFYVDVYDTTQ--EDYHSLINGIVTGNC Bacillus_subtilis CVTGETLLLTENGGYEIRATEWHKFYVDVYDTTQ--EDYHSLINGIVTGNC Bacteriophage_Aaphi_23_Haemophilus_phage_Aaphi_23 CFPGQSELKGLPRGTVLLATPNHPILTQASCHIYNLQTVSGYYNSVFVSNC Bacteriophage_APSE_2 CLAKGTLVLTITGAYGVGMTADHQVLTEVYDLIN-CGPRNRFVGPLIVHNC Bacteriophage_APSE_5 CLAKGTLVLTITGAYGVGMTADHQVLTEVYDLIN-CGPRNRFVGPLIVHNC Bacteriophage_of_Candidatus_Hamiltonella_defensa_5ATac_endosymbiot_of_Acyrthosiphon_pisum CLAKGTLVLTITGAYGVGMTADHQVLTEVYDLIN-CGPRNRFVGPLIVHNC Bathycoccus_tropical_Atlantic_Metagenome CLRDDQLVLRADGLTEFVCTPNHIVCLAT-FTGFQIDNENRFLDGTVTHNC Bathycoccus_tropical_Atlantic_PCRproduct CLRDDQLVLRADGLTEFVCTPNHIVCLAT-FTGFQIDNENRLLDGTVTHNC Batrachochytrium_dendrobatidis CLSGDTEVVLGNGGRVIKADPEHPLFARLYDFNTV-SQNHSFFNSIVSHNC Batrachochytrium_dendrobatidis_2 CFAPGTLVRMANGASGFTCNSRHDLIIFGFELEPLQSSAPHFLSFVVVHNC Batrachochytrium_dendrobatidis_3 CFAGHTSLLLADGGDELVVTGNHILCLQPYYGFKV-DGNQRFLDFMVLHNS Batrachochytrium_dendrobatidis_4 CLSGDTEVVLGNGGRVIKADPEHPLFARLYDFNTV-SQNHSFFNSIVSHNC Batrachochytrium_dendrobatidis_5 CFGRDTPLLMADGHDAFVCNKEHILVMGEYFGFTVMGPNSRFLDFTVTHNT Botrytis_cinerea CLAWDTKLLRYDGKEDLVVTGNHILVLATNWAGFRVDKDQLYLDYLVLHNS Burkholderia_sp. AQPLDARVRTLTGGRSAECCDEHLWCVATQCISV-SHPSRLYVDYVVTHNT Burkholderia_cenocepacia AQPLDARVRTLTGGRSAECCDEHLWCVATQCISV-SHPSRLYVDYVVTHNT Burkholderia_vietnamiensis PQPLHSLVRMADGGRSVEAARVHHWPVPARCLVV-ADEMHCYIHDIVTHNC Candida_glabrata CFAKGTQVLMADGDLSYTCNSNHTLVLYGVTLD--DDSDHQFLNLVLVHNC Candida_parapsilosis CLSEDMRIQTDKGGVSLLVTEDHDMYVRVWCVTV--PTGLIVAKPVVIGNC Candida_tropicalis CLSEDMRVQTNKGSFSLFVTDNHDMYVRVWCVTV--PTGLIIVRPTIVGNC Candida_tropicalis_2 CFTKGTQVMMADGLMDFTVSADHKLILYGITLA--EETDHQFLNMALVHNC Candidatus_Desulforudis_audaxviator CVTGDTWVTTGAGGYTVRLTADHMILRDVYDVQV--PGINAFDNGIVAHNC Candidatus_Methanoregula_boonei CFYGETKIEIFDGRTVDTNGGMHLRRIRVYCLTVA--EDHTLVNGVFTGQC Capsaspora_owczarzaki CFPAEDHEVLTAHPAFEKHTAGSILAAGTVWCVRVPTKE--HLRPIIVGNT Capsaspora_owczarzaki_2 CTAPDTLVRMADGDDGFECNGNHILVIGFEIVPAAADGE--YVDFLVAHNT Capsaspora_owczarzaki_3 CFSPETPVRMADGSG-FTCNSRHDLVLGFEIVPAAADGE--YVDFLVAHNT Carboxydothermus_hydrogenoformans CVTGDTLVFTDKGGLEIKVTEEHKIFTEVFDITA--PPKYTWINGILSLDC Chilo_iridescent_virus CVAPETMILTEDGGCTLSCTPEHKFIIRVDDTYC--FTEPINHNGILTGQC Chlamydomonas_eugametos CLTSDHTVLTTRGGVDLFVTPNHRMYVPVYCLTG---PNNVFYKAVWTGNS Chlamydomonas_moewusii CLTSDHTVLTTRGGVDLFVTPNHRMYVPVYCLTV---PNSVFYKAVWTGNS Chlamydomonas_moewusii_2 CLTPDHDVLTTKGNINLLVTPNHRMYIPVFCLTV---PNEVFYIPVWTGNS Chlamydomonas_reinhardtii CLSEEHQVLTNEGGLSLVVTPGHDMYLRTWCVS----LPHTYILPTILGNC Chlorella_virus_PbCV_NY2A CLHPETDVITFSGGEPWKCNETHVLSLVGDYVGPVLDKDHRYLDFTVTHNT Chlorella_virus_PbCV_NY2A2 CVAGDTKILTSSGGTELRCTPYHKFYIDTYCFN--EPKRHMGVGVITGGQC Chlorobium_chlorochromatii CVTADTLIATDRGGYQLKLTGDHVVFTAVFDLTE-PETDHFIANGIGVHNC Chlorochromatium_aggregatum CVTADTLIATDRGGYQLKLTGDHVVFTAVFDLTE-PETDHFIANGIGVHNC Chloroflexus_aurantiacus CLHGDSLIVTDHGGFTLTGSHNHRIMLDVYDISV--TATHRYAQGFINHNS Clostridium_botulinum_phage_C_St CFDGQQKTLTKSSNKEILVTEDHINVTYVYCFEMKNIEEPYFTNGIITHNC Clostridium_botulinum_phage_D CFDGQQKTLTKSSNKELLVTEDHINVTYVYCFEMKNIEEPYFTNGVITHNC Clostridium_kluyveri ALDLDTPIDTPTGGEFIIADTEHIWTVPVKCIAV-EDEKKLYLNHTATHNT Clostridium_thermocellum CFVAGTMILTVAGGDVIKTTFEHLFYAKVYNFQV--DDFHTYHNGVLVHNV Clostridium_thermocellum_2 QLALDTPIPTPDGGTSIVAGERHLWKVKMRCIQV-DSPSRLYLSMIPTHNS Coelomomyces_stegomyiae CLTPSHEVLTENGEIELQVTQEHYMWVSVHCVEV--PEPHLFYKGVWTGNS Corynebacterium_phage_P1201 CYSSDTEVLTSEGGVDLLVTPNHKMLATVYCATV--PNHTLYVPVWSGGNS Costelytra_zealandica_iridescent_virus CVVGETLVLTQNGGTSIICTPYHNFLSDTYCFS--EPLNNAGVNGILTGQC Coxiella_burnetii CVTGDTLICLADGGRSIKATAEHRLLAEVYDLTV--PKYASWLDGVVSHNS Coxiella_burnetii_2 CVTGDTLICLADGGRSIKATAEHRLLAEVYDLTV--PKYASWLDGVVSHNS Coxiella_burnetii_3 CVTGDTLICLADGGRSIKATAEHRLLAEVYDLTV--PKYASWLDGVVSHNS Coxiella_burnetii_4 CVTGDTLICLADGGRSIKATAEHRLLAEVYDLTV--PKYASWLDGVVSHNS Crocosphaera_watsonii CLATNSEIILADGGRYIETTLTHPYLTQVYDLTI--PKTHNFVNDICVHNT Crocosphaera_watsonii_2 CFDGKTKILTNQGDNTLRLTPDHKMVNDVYNITV--AEHHNYVTPVVVCNC Crocosphaera_watsonii_3 CVAPETKILTDRGGESLDCTYYHKFHVCRYDDTYCFSEPKRHLNGILTGQC Cryptococcus_bacillisporus CLQNGTRLLRADGLEDLVCTHNHILSLPTKWSGFVVDKDSLYLDYLVLHNS Cryptococcus_bacillisporus_2 CLQNGTRLLRADGLEDLVCTHNHILSLPTKWSGFVVDKDSLYLDYLVLHNS Cryptococcus_gattii CLQNGTRLLRADGLEDLVCTHNHILSLPTKWSGFVVDKDSLYLDYLVLHNS Cryptococcus_laurentii CHAEGTELIKFDRVESLVVTDNHIMMLSTPWYGFAVDSDRQYLDWMVLHNS Cryptococcus_neoformans CLQNGTRLLRADGLEDLVCTHNHILSMPTKWSGFVVDKDSLYLDYLVLHNS Cryptococcus_neoformans_2 CLQNGTRLLRADGLEDLVCTHNHILSMPTKWSGRVVDKDSLYLDYLVLHNS Cryptococcus_neoformans_3 CLQNGTRLLRADGLEDLVCTHNHILSMPTKWSGRVVDKDSLYLDYLVLHNS Cyanothece_sp_ATCC_51142 CFPAKTLILTDQGENTICCTPDHPFATRVYNFTV--EDNHNYITPVLVHNC Cyanothece_sp_CCY0110 CFTGDTLIPLVDGGEEIKCTPDHQFMLDVYCLTV--PEYNNFAAGVFVHNC Cyanothece_sp_CCY01102 CFPAKTLILTEKGENTICCTPNHPFATEVYNFTV--EDNHNYITPVLVHNC Debaryomyces_hansenii CLASDTLVRTSEGRVSFKCTPDHHLELEDGEFRAIEVSGGVFQNRLVVANC Debaryomyces_hansenii_2 CFAKGTEVLMADGRIAFTCNAKHELVVYGVTLP--DNSDHQFMNQAVVHNC Deinococcus_geothermalis CVTADTLIDVPGTGRVVETTPHHPFLGQVYDLTV--PGDANFIADICLHNT Deinococcus_radiodurans CVTADTWVSTAFGGYELRLTGNHQLLKAVYDVTV--EQVHAFDNGVLAHNC Deinococcus_radiodurans_2 AQPLDAKVLTPLGGASVEADAEHLWNVPAQCIAV-DAPDHLYVGYIVTHNT Desulfitobacterium_hafniense CVTGDTWVLTEEGGYELKVTADHLVRVEVFDAQV--PGINAFDNGIYVHNC Desulfitobacterium_hafniense_2 CVTGDTWVLTEEGGYELKVTADHLVRVEVFDAQV--PGINAFDNGIYVHNC Desulfovibrio_vulgaris CQPAGTMVQKVIDGRVTRATPEHRFTVYSMDVD---KDLHYVADGLVTHNC Dictyoglomus_thermophilum CLLGKEKILVKNSNRKLIVTEKHPMLRDVYSLEV--ENTHTFASGIYVHNC Dictyostelium_discoideum CLHPDTIITMSNGGKEIICTNDHRFLTEISDFTT-ESDYHSMINGFVSHNC DnaB_Nostoc_punctiforme CLAGDSLVTLVDSGRKIRATGNHKFLTEVFDLTV--PGLHNFVNNIIVHNS Emericella_nidulans CLANGTQLLRYDGKEDLVVTANHILVLATEWAGFRVDKDQLYLDYVVLHNS Emericella_nidulans_2 CLANGTQLLRYDGKEDLVVTANHILVLATEWAGFRVDKDQLYLDYVVLHNS Enterobacteria_phage_Min_27 ACPLNEPILLADGGRYVDCAGDHLWEVECLCIMV-DHPRHLYVGYVATHNT Ferroplasma_acidarmanus CVTGDTKIFTSEGGFEIKVTGDHKIYSDVYDLV--EPSTHSFVNGIVVHNC Ferroplasma_acidarmanus_2 CLPEDELISQGDKGNAFRATSEHPVLSEVYDDIV--YNMEVETKGFAVHNC Ferroplasma_acidarmanus_3 CVTGDTKIFTSEGGFEIKVTGDHKIYSDVYDLV--EPSTHSFVNGIVVHNC Ferroplasma_acidarmanus_4 CLPEDELISQGDKGNAFRATSEHPVLSEVYDDIV--YNMEVETKGFAVHNC Floydiella_terrestris CLTPDHDVLTAEGNLSLLVTLNHRMYVKVFCLSV---PNEVFYLPVWTGNS Frankia_sp. CQPYDALVSTPSGGHALDVTADHLVWRPVYDIQT---DSGEYLAGLRVHNC Frankia_alni ALALGTALPTPTGGSVIVADGQHQWITPVRCVEVD-SPDHLYLTCIPTHNS Gemmata_obscuriglobus CVVAGTEVTDAETGKSITATDNHPFRVDTYDLTV--DEDHNFVNGLIVHNS Gemmata_obscuriglobus_2 CQPAGTQVAKVIKAVTGITSRRHTGNLEVWSMDV-ERDKHYVADGIVVHNC Gloeobacter_violaceus CCAADTPIADPVTGREVKTTLTHPYLTQVYDLTV--PVTHNFVADICLHNT Gloeobacter_violaceus_2 CFAAGTLLHTEQGGYSVEVTANHKMARRVYDIEV--EGMHLLSNGIYTSNS Gloeobacter_violaceus_3 CVTADTWVHTGDGGHQLRLTGNHQVLKEVYDCTV--PGPARFDNGLVVHNC Guillardia_theta_Gth_DnaB CLSYATNQPYFLKISVIVSTVEHYVLTNVYDFWI-PKTNNFFVNALLVHNS Haloarcula_marismortui CVHGDTRVTLADGGRELDVTPSHPLFVWVYDLEI--EGTHNYLNGVVSHNS Haloarcula_marismortui_2 CFHPDTRLWYEDEDRTLRVTPDHTMLRHVYCLTV--ADTHRVAEGTYVGQC Haloarcula_marismortui_3 CFTPDTDVLTPEGKMDFRVTPNHRMLVGVYCVTV--ADNHTLMKFQFVGQS Haloarcula_marismortui_4 CLTADSDVLVRSERGAVTVTDDHPMYIPVYDLTV-SENAPNFAGGAVVHNS Halobacterium_salinarum CVRGDTTVALADGGHRLTVTPSHPLFVWVYDLEV--EGTHSYLDGVVSHNS Halobacterium_salinarum_2 CFHPETNVWFRDEGRELTVTPDHSMRRHTYSLTV---AETNTLNGLFTGQC Halobacterium_sp_NRC_1 CVRGDTTVALADGGHRLTVTPSHPLFVWVYDLEV--EGTHSYLDGVVSHNS Haloferax_volcanii SVTGDRPVVVRDPFGESTTTRDHSYVVYVYDLSV--EENENFVGGIVLHNT Haloquadratum_walsbyi CFSGDTEIALASGGEVIRCTPDHEFMLDVYDLEV--PVTHNFASGVFVHNS Haloquadratum_walsbyi_10 SVTGDRPVVVRDPYGESTTTRDHSYITYVYDLSV--ATNQNFVGGLVLHNT Haloquadratum_walsbyi_11 CVTGSTPILTNKGGATLTVTPEHKLLIRVYDLTV--PGVRNYVIPTVMHNT Haloquadratum_walsbyi_12 CLTADSTVMLKEKGCSIRGTPNHRLMVTVYDITV--ADNHEYVDGIISHNS Haloquadratum_walsbyi_13 CVEENSLVSTDEGGFNIAATPNHRFRTYTKDISV--PSNNTYIDGFVTHNT Haloquadratum_walsbyi_14 SLTPTQTLLIRRDGRTLEITGNHSLFSYVYDISV--PGASGHDGAICVKNS Haloquadratum_walsbyi_15 SIEADESIVIRRDGRSIRATKAHSFVTYVYDLSV--SGLETFTEGVVTHNT Haloquadratum_walsbyi_2 CVSGETDIALVEGGRSVTVTPSHPVFVWVYDLEV--EGTHAYLNGVLSHNS Haloquadratum_walsbyi_3 CVTGETRIHTTDGGKQLEASVNTPVLTEVFDLTV--PNTQNFIGGIVTHNT Haloquadratum_walsbyi_4 CVTGETLVSLADGGSEVTTTADHPFIIDVYDLTV--SGTHNFVNGMIVHNS Haloquadratum_walsbyi_5 SYHPRSEVLLADGGRSVLVTPEHPMFIWVYDITV--EPTNTFISGVVLHNS Haloquadratum_walsbyi_6 CFHPETKIWFRDTGREITITPDHEMHIYTYCLTV--SETHSLINDLSQKQC Haloquadratum_walsbyi_7 SVAADSRLVAVSPGRSLDITDEHSLFRVDYDGYL--YDLQVGGNWLYAHNS Haloquadratum_walsbyi_8 CLPSDARIQMADGGTSLRSSGDHRIMITTYDIET---TTHNFVDDCLVHNC Haloquadratum_walsbyi_9 CFTPDTNVLTPNGEIDFRVTPNHRMLVGVYCVTV--ADNQTLLTFQWTGNS Halorhabdus_utahensis CLDADTNVQLADGGKELDVTPSHPLFVWVYDLEV--EGTHSYVNGVVSHNS Halorhabdus_utahensis_2 CVTGDTLVQAGDGGEEVTVTPDHPFFISVYDLTV--EGTHNFLNGMVVHNS Halorhodospira_halophila CLAYDAEIVQADGGRRIETTLTHPFLTQVYDLTI--PETHNFINDVCVHNT Heterosigma_akashiwo_virus SVTKETPLMLRTMNGYVEVTEDHSLISYVYDVET--EDGIFHAGEIIVKNT Histoplasma_capsulatum CLAKGTQLLRYDGKEDLVVTPNHILVLMTEWAGFRVDKDQLYLDFLVLHNS Invertebrate_iridescent_virus_6 CVAPETMILTEDGGCTLSCTPEHKFIIRVDDTYC--FTEPINHNGILTGQC Kazachstania_exigua CFAKGTQVMMADGLMNYVCSGNHKIVMYGITVP--DNTDKQYLSMALVHNC Kineococcus_radiotolerans CLTAGTRVLRADTGKTVRATANHPFLTQVYDATV--LGGHNFVDGIAVHNS Kluyveromyces_lactis CFSKGTEVMMGDGKISFQCNSSHKLVLFGVTLA--EESDHKFLNMTLVHNC Kluyveromyces_lactis_2 CFSKGTEVMMGDGKISFQCNSSHKLVLFGVTLA--EESDHKFLNMTLVHNC Lactococcus_phage_KSY1 CFSGDTEILTPYGVYEDTNTSIHATGNDVYCVNV---PTHNIVKVSIQGNC Listonella_pelagia_phage_phiHSIC CHAYGHDIMMSDGYIRSSSTFKHRSKLGVGDYYGF-DGDHLYLDFVRHHNC Lodderomyces_elongisporus CFTKGTQVMMADGSLNFTVSADHKLVLYGITLS--ETSDHMFLNLALVHNC Magnetospirillum_magnetotacticum CFVAGTPVRMADGSLDFFVTADHPFLTVVYNLHL--IGNNTYVSGYYVHNY Methanococcus_aeolicus CFPPNTTILVNINGRSFETTPDHPVMVFVYSLNA--KKYHNVVSNIQMHNC Methanococcus_aeolicus_2 CLTENAKIYTADEGRTIEATEDHKFLTDVYDITC--HNDHSFINGFVSHNC Methanococcus_aeolicus_3 SLVKDELIFIKDNGTTVSITEDHSLFNYVYDLSV--EDNENFITGILCHNT Methanococcus_aeolicus_4 CLNANTEILQESGGLKITTTPNHLFLVYAYDIELPDDGTNDHYNGFIVHNS Methanococcus_aeolicus_5 CLSTDSNILTDDGGRILKGSADHPILLKLYDVSI-LHQSHNFINGVVVHNC Methanococcus_aeolicus_6 CFHPDEILFVDFGGREIKITKDHPVVVEVYSVET--DNNLLISYGLLIHNC Methanococcus_jannaschii CLHPDTYVILPDGFSELITTGEHKLFVYVYDLEV--EDYHNFINLIINHNS Methanococcus_jannaschii_10 SVSKDTPILVKIDGGYIELTGNHSIMMFVYDVSV--PNNEMFFVPILLHNS Methanococcus_jannaschii_11 CLTGDAKITLPDEGREIEATGDHKFLTDVYDITC--HKDPSFINGFVSHNC Methanococcus_jannaschii_12 SLGRDELIFIKEGGTSIIVTEDHSLFNYVYDLSV--EDNENFITGILCHNT Methanococcus_jannaschii_13 SLPYDEKILIFENGKKVRVTGDHSVFTYVYDISV--EGTENFIGFICLHNT Methanococcus_jannaschii_14 CLTSNSKILTDDGGRVLEGSKDHPVLTKLYDVGI-VSKEHNFINSIVVHNC Methanococcus_jannaschii_15 SVDYNEPIIIKENNKKVRVTRSHSVFTYAYDLTV--PNAENFVGGFVLHNT Methanococcus_jannaschii_16 CFHPDEVLFIDRGGREIKITKDHPVVIYVYSVET--ENSLLITYGILIHNC Methanococcus_jannaschii_17 CLTPDTYVVLGDGNYELKATPDHCLLVYVYDLSI--KHNQNFINGVISHNC Methanococcus_jannaschii_18 CVDGDTTVLLDGKGREIIATEDHPFYTYVYDITT-ISETHNFINGFLTGNC Methanococcus_jannaschii_19 SLPYEEKIIIKEGGREITATPYHSFVIYVYDISV--EGLETFTDGVLTHNT Methanococcus_jannaschii_2 CLNANTEILQESGGLEITTTPNHIFLVYAYDIEL-PDDGSNSHNGFIVHNS Methanococcus_jannaschii_3 CVPPDTLLILENGPEEIILTPEHPVYAFVYNLEV--EDDSSYVVSGTLHNC Methanococcus_jannaschii_4 CLMPHEKVLTEYGWHSITTTPEHPFLTYVYDLTT---ETHNFINGIVVHNT Methanococcus_jannaschii_5 ALAYDEPIYLSDGRREITLTHDHPVYIHIYDLTV--EDNHTYIEGFAVSNC Methanococcus_jannaschii_6 CIEGDAKILTDRGKDTIKITPDHKFPVEVYNITV-NEFNHNYVTPIVVFNC Methanococcus_jannaschii_7 CHPKGTKVVVKGKVNGLKCTPNHKIPLEVYDLTL--EGRPYYFNGILTHNS Methanococcus_jannaschii_8 SILPDEYLTIIEEGRTIKVTRGHSLFKYVYDLSV--EDNENFLNNIYAHNS Methanococcus_jannaschii_9 CLTGDTKVIVNGEGRELKVTTYHPLLITIYDLHV--PRYHNFILPTILHNT Methanoculleus_marisnigri CYDDETEVLTESGQVDLAVTPNHRMYVTIYCLEV--PNHTLYVIPVWCGNS Methanoculleus_marisnigri_2 CFAGDTEITVSDGGRVLTVTPDHAMLVRVYCLTV--AENHTLVNGIFCGQC Methanopyrus_kandleri SIPGDEVVWAKVDGREVIVTEDHSVFTYVYDVV-EVKLGHNFVQGVLLHNS Methanopyrus_kandleri_2 CVAPETKICLADGGRSIRTTPEHKFLVYVYDFTV--EEHHNFAEGFVVHNT Methanopyrus_kandleri_3 SVSADTPILVRRGDGTIELTGNHAVMVYVYDVSV--PGNEMFFVPVLLHNS Methanopyrus_kandleri_4 CLAPGTKILTEHGGLTIEGSEDHPVLTRFYDIGV-CHGAHNFIDGVVVHNC Methanopyrus_kandleri_5 CFAPGTRVITASGGAELVVSEDHKFLVYLYDVTVV--PDHTLVNGIITSNC Methanospirillum_hungateii CFHGDTLIEIYADGKNLLVTPDHAMLVRVYCLTV--DRDHNVVNGIFTGQC Methanothermobacter_thermautotrophicus CVSGDTIVMTSGGGHCLRLTHDHRVLVDVTDATV--YGASAFTNGFIVHNC Methylobacterium_extorquens CFAAGTLIKTPKGGTSIVCTHDHPFFCAVYNLRV--SGHPSYFGGVLVHNC Methylobacterium_extorquens_2 ALPLDALVHTPAGGRTAEACPEHLWEVQAACIRI-DHPDHLFIDYVVTHNT Methylococcus_capsulatus CVTADTWVMTASGGHTLRLTANHPVLRAVYDVTV--ADVHAFDNGLYVHNC Methylococcus_capsulatus_Bath_prophage_MuMc_02 CFPAETPVRAAARGHRLTLTANHPVLTHVYDFET--ETGLIMAGGVIVHNC Microcoleus_chthonoplastes CLSGSTEIIDAETNRKIKATADHRFYSEVFDLSI--SQTHNLINDFIAHNC Microcystis_aeruginosa CLAGDSLVELAAPGRTIRATANHKFLTEVYDLTV--DKLHNFINNIIVHNS Mycobacteriophage ALDVETPILTGNGGAELVASDHHLWAVETVCIQI-DHPSHVFLSLTPTHNT Mycobacteriophage_2 ALAIDTPILSERGGQTIVADEDHLWTVPTRCITV-DNDSRLYVGFVPTHNT Mycobacteriophage_3 CSWTNARAVTRRGEINATITANHRVVGEVWCLRV--PNGRFFIKIHLTGNS Mycobacteriophage_Bethlehem PLALNTEVPTPSGGTEITASASHGWTTPVKCIGI-DTEDHLFQSRILTHNT Mycobacteriophage_Bethlehem_2 CSWTNARAVTRRGEINATITANHRVVGEVWCLRV--PNGRFFIKIHLTGNS Mycobacteriophage_catera SLACSTPILTTNGGQEVVTDAEHLWQVPVRCITV-AHESSLYVGFVPTHNT Mycobacterium_avium ALALDTPLPTPTGGTVIVADAAHQWLTAVRCVEV-DNDSHMYLAMVPTHNS Mycobacterium_avium_2 ALALDTPLPTPTGGTVIVADAAHQWLTAVRCVEV-DNDSHMYLAMVPTHNS Mycobacterium_avium_3 ALALDTPLPTPTGGTVIVADAAHQWLTAVRCVEV-DNDSHMYLAMVPTHNS Mycobacterium_bovis CLPAGELITTADGANAFSVTAEHPLLAPVYNLDV--ENPDSYLYGFAVHNC Mycobacterium_bovis_2 CLAEGTRIFDPVTGAIVWATPDHKVLTRTFDLEV--EELHTLVEGVVVHNC Mycobacterium_bovis_3 CLPAGELITTADGANAFSVTAEHPLLAPVYNLDV--ENPDSYLYGFAVHNC Mycobacterium_bovis_4 CLTASTRILRADTGREVEATGSHPFMKHVFDGTV--SGTHNFVNGISLHNS Mycobacterium_bovis_5 CLTASTRILRADTGREVEATGSHPFMKHVFDGTV--SGTHNFVNGISLHNS Mycobacterium_chitae CFNYSTRVQLADGRSQFAATPNHLIRTNRFDIEV--EGNHNYFDGVMVHNS Mycobacterium_fallax CFSYGTRVQLADGRSQFAATPNHLIRTNRFDIEV--EGNHNYFDGVMVHNS Mycobacterium_flavescens CVTGDALVRLPFGGYEVTGTANHPLLCPVYSLRV-DTDDHSFLNGFVSHNT Mycobacterium_flavescens_2 CFAYGTRGALADGKSQFAATPNHLIRTNRFDIEV--EGNHNYFDGVMVHNS Mycobacterium_flavescens_3 CFNYSTRVQLADRKSQFAATPNHLIRTNRFDIEV--EGNHNYFDGVMVHNS Mycobacterium_flavescens_4 ALALDTPLPTPTGGTVLVADAEHQWLTPVRCVEV-DNDDHLYLSMIPTHNS Mycobacterium_gastri CTTGDTLVRLPFGGYEVTGTANHPLLCPVYSLRV-DTDDHAFLNGFVSHNT Mycobacterium_gastri_2 CGSWYTNVTLADGHASLAMTRNHLIRTSRFDIEV--EGSHNYFDGVMVHNS Mycobacterium_gastri_3 CLAGDTLWTANRGRRSVRATDNHPMLVPVYDIEV--DGPHNFVEGLVVNHS Mycobacterium_gilvum ALALDTPLPTPTGGTVLVADAEHQWLTPVRCVEV-DNDDHLYLSMIPTHNS Mycobacterium_gilvum_2 CVTGDAMVRLPFGGYEVTGTSNHPLLCPVYSLRV-DTDDHSFINGFVSHNT Mycobacterium_gordonae CLTGDALVRLPFGGYEVTGTSNHPVLCPVYSLRV-DSEDHAFLNGFVSHNT Mycobacterium_intracellulare ALALDTPLPTPTGGTVIVADAAHQWLTAVRCVEV-DNGSHLYLAMVPTHNS Mycobacterium_kansasii CVTGDALVRLPFGGYEVTGTANHPLLCPVYSLRV-DTDDHAFLNGFVSHNT Mycobacterium_leprae ALALDTPLPTPTGGTVIVADAQHQWPTPVRCVEV-DNAAHLYLGMVPTHNS Mycobacterium_leprae_2 CVSGNSLVRLLFGGYEITGTSNHPLLCPVFSLHV-DTEDHSFLNGFISHNT Mycobacterium_leprae_3 CMNYSTRVTLADGKSQFAATPNHLIRTNRFDIEV--EGNHNYFDGVMVHNS Mycobacterium_leprae_4 CLTADARINVKGKGRALEATGNHQFLVPTYDIQV--VGLENFVNGIVAHNS Mycobacterium_malmoense CCTGDALVRLPFGGYEVTGTSNHPLLCPVYSLRV-DTDEHAFLNGFVSHNT Mycobacterium_shimodei CMNYSTRVTLADGKSQFAATPNHLIRTNRFDIEV--EGNHNYFDGVMVHNS Mycobacterium_smegmatis ALALDTPLPTPSGGTAIVADAQHQWPTPVRCVEV-DNPEHLYLGMVPTHNS Mycobacterium_smegmatis_2 CMTANTRILRADTGREVEATANHPFLTDVYDGTV--PGTHNFVQGISAHNS Mycobacterium_species ALALDTPLPTPDGGTVIVADAQHQWLTPVRCVEV-SNDSHMYLSMVPTHNS Mycobacterium_species_2 CVTGDALVRLPLGGYTVTGTENHPLLCPVYSLRV-DTEDHAFINGFVSHNT Mycobacterium_species_3 ALALDTPLPTPDGGTVIVADAQHQWLTPVRCVEV-SNDSHMYLSMVPTHNS Mycobacterium_species_4 CVTGDALVRLPLGGYTVTGTENHPLLCPVYSLRV-DTEDHAFINGFVSHNT Mycobacterium_thermoresistibile CFDYSTRAQLADGRARFAATPNHLIRTNRYDIEV--EGNHNYFDGVMVHNS Mycobacterium_tuberculosis CLPAGELITTADGANAFSVTAEHPLLAPVYNLDV--ENPDSYLYGFAVHNC Mycobacterium_tuberculosis_2 CLTASTRILRADTGREVEATGSHPFMKHVFDGTV--SGTHNFVNGISLHNS Mycobacterium_tuberculosis_3 CLTASTRILRADTGREVEATGSHPFMKHVFDGTV--SGTHNFVNGISLHNS Mycobacterium_tuberculosis_4 CLTASTRILRADTGREVEATGSHPFMKHVFDGTV--SGTHNFVNGISLHNS Mycobacterium_tuberculosis_5 CLTASTRILRADTGREVEATGSHPFMKHVFDGTV--SGTHNFVNGISLHNS Mycobacterium_tuberculosis_6 CLAEGTRIFDPVTGAIVWATPDHKVLTRTFDLEV--EELHTLVEGVVVHNC Mycobacterium_tuberculosis_7 CLAEGTRIFDPVTGAIVWATPDHKVLTRTFDLEV--EELHTLVEGVVVHNC Mycobacterium_vanbaalenii ALALDTPLPTPTGGTVIVADAEHQWLTPVRCVEV-DNDDHMYLSMIPTHNS Mycobacterium_vanbaalenii_2 CLTGDSMVRLPFGGYEVTGTANHPLLCPVYSLRV-DTDDHSFINGFVSHNT Mycobacterium_xenopi CITGDALVALPEGGLRVTGTANHPLLCPVYSLRV-DTADHAFINGFVSHNT Myxococcus_xanthus CVKNDSLIFTDRGGYELEATPEHPIRVDVVDLSV--PETHEFVNGVVCHNT Natronomonas_pharaonis CVDGDTSVTLASGGRELEVTPSHPLFVWVYDLEV--ESTHSYLNDVVSHNS Natronomonas_pharaonis_2 CFSGDTDVATPDGTHDFKVTENHRFLLEDHDGDVHCITAEDNHHLQWVGQS Natronomonas_pharaonis_3 CFTPDTEVLTPDGEIDFRVTPNHRMLVGVYCVTV--EDNHTLLKFQFVGQS Natronomonas_pharaonis_4 SIPADEQVVVRRNGRSIRATKAHSFVTYVYDVSV--EGLETFTDGVVTHNT Neosartorya_aurata CLAKGTRLLRYDGVEDLVVTPNHILVFTTEWAGFRVDKDQLYLDYLVLHNS Neosartorya_fennelliae CLAKGTRLLRYDGVEDLVVTPNHILVLATEWAGFRVDKDQLYLDYLVLHNS Neosartorya_fischeri CLAKGTRLLRYDGKEDLVVTPNHILVLTTEWAGFRVDKDQLYLDYLVLHNS Neosartorya_glabra CLAKGTRLLRYDGVEDLVVTPNHILVLTTEWAGFRVDKDQLYLDYLVLHNS Neosartorya_glabra_2 CLAKGTRLLRYDGIEDLVVTPNHILVLSTEWAGFRVDKDQLYLDYLVLHNS Neosartorya_quadricincta CLAKGTRLLRYDGIEDLVVTPNHILVLTTEWAGFRVDKDQLYLDHLVLHNS Neosartorya_spinosa CLAKGTRLLRYDGIEDLVVTPNHILVLSTEWAGFRVDKDQLYLDYLVLHNS Nocardia_farcinica CLPASTRILRADTGREVEATGNHPFLTDVYDGTV--PGTHNFVQSISVHNS Nocardia_farcinica_2 CFPAGTVVSGPSAGKQLSLTGNHPVLTHVFSLTSS--EGWHTANSLIVSNC Nocardia_farcinica_3 CFPAGTPVDTIDGKEPIRCTPEHPILVQVYNLHV--EGTHTYTRGAVVHNC Nocardioides_sp_JS614 ALALDTALPTPSGGSRIVADAQHQWLTPVRCVEV-DNTEHLYLSMIPTHNS Nocardioides_sp_JS6142 CLAGETKVLTWDGRKELFATDGHRWFVEVYCAEV--EDGHAFTDNILTGNC Nostoc_punctiforme CFIGDTLIPLADGGEEIICTPDHQFMLDVYCLTV--PEYHNFAAGVFVHNC Nostoc_sp_PCC7120 CLTGDSLVTLAPGGCKIRATANHKFLTEVFDLTV--PGLHNFINNIVVHNS Nostoc_sp_PCC71202 CLPEDALVHTAKGATYPRATLNHRQAVQTYDIEV--DEAHCFYDGYLTHNS Paracoccidioides_brasiliensis CLAKGTLLLRYDGKEDLVVTPNHILVLATEWAGFRVDQDQLYLDFLVLHNS Pelodictyon_luteolum CVTAETLVATDRGGYRLKLTGDHPVYTPVFDLTE--PENHHFINGIGVHNC Penicillium_chrysogenum CLAKGTRLLRCDGKEDLVVTPNHILVFKTEWAGFRVDKDQLYLDYLVLHNS Penicillium_expansum CLAKGTRLLRYDGKEDLVVTPNHILVLETEWAGFRVDKDQLYLDYLVLHNS Penicillium_vulpinum CLAKGTRLLRYDGKEDLVVTPNHILVLKTEWAGFRVDKDQLYLDYLVLHNS Phaeosphaeria_nodorum CLETATVVRTKQGVDSFTCTPDHELLLGSYRGI--EVSGHEFQNRTMVSNC Phaeosphaeria_nodorum_2 CLSADHEVLTSTGDMDAVCNESHRWYLEYSDNDKIQEVIDAAQKPFFTGNC Phycomyces_blakesleeanus CFSGDTFLLLADGGEALEVTGNHILCLPQTYYGFRIDGNQRFLDGLVVHNS Phycomyces_blakesleeanus_2 CFAGDTFLLLADGGEALEVTGNHILCLPQTYYGFRIDGNQRFLDGLVVHNS Pichia_guilliermondii CLASDTLVRTTQGLVSFKCTPDHHLELGEFRAI--EVSGGKFQNGLQIANC Pichia_guilliermondii_2 CLASDTLVRTTQGLVSFKCTPDHHLELGEFRAI--EVSGGKFQNGLQIANC Pichia_stipitis CFAKGTKVLMANGTASYTCNATHKLVLYGITLS--EDSDHQFLNLALVHNC Picrophilus_torridus CVTGDTPVLLADGGREVKVTPVHKLFRDVYDVTT-PDFGSNFVGAILLHNT Podospora_anserina CLSPDTMVRTTNGKSSFTCTPDHIMTLGEFRLI--EVSGELFQDRTVVHNC Podospora_anserina_2 CLHPSTTVRTLAGKKSFKCTPDHILPLDDYRAI--QVSGSLFQNGLVTHNC Polaromonas_naphthalenivorans CVTADTRLATQHGGYQIKATAWHEFYTPVYDTTQ--PDGNTVINGLVTGQC Polaromonas_sp_JS666 AQPLDARVRTRTGGRSTECCAEHLWQVLCQCISV-SHPSKLYIQDVVTHNT Polaromonas_sp_JS6662 CVTADTWVMTTAGGPALRLTADHRVRRDVFDVTV--ADIHAFDNGLYVHNC Polynucleobacter_sp_QLW_P1DMWA AQPLDAKVKTVDGGREAECCDEHLWRVQAQCVSV-SHPSRTYVDYVVTHNT Porphyra_purpurea CISKFSHIMWSHVEKYLELTSNHKILTNVFDFAA--NPIPNFINNIIVHNS Porphyra_yezoensis CISKFNYLQTSLYGKYIQLTSNHKLLTIVFDLEC--KPLCNFINNFIVHNS Pseudomonas_aeruginosa_phage_phiEL AMPLSTRVKVPNGGRTADSHPYHLWKTQETCCIALDNDEKLYVDYIVTHNT Pseudomonas_aeruginosa_phage_phiEL2 QQRNSAKVRIVPKGRATDVGTEHLWTLDCTCIEV-DNSEQLYLDFIVTHNT Pseudomonas_aeruginosa_phage_phiEL3 AGVLSSKIKIPGGGRYTDVSPDHLWKVETQCITI-DHPDHLYIDFIVTHNS Pseudomonas_aeruginosa_phage_phiEL4 MQPLYAKIKVPGGGRYTDAGLDHLWKVEAQCISV-AHPDRLYIDFIVTHNT Pseudomonas_fluorescens CFAAGTMVATPKGSETLEVTPGHPFYVLTYNLTV--DIGHTFYLGTWVHNV Pseudomonas_sp_A1_1 CFAAGTLVATPDGSETLLVTPSHPFYVKTFNLTV--DMGHTFYLRTWVHNT Pseudomonas_syringae CFAAGTMVSTPDGDESLLVTPGHPFYVKTYNLTV--DVGHTFYLKTWVHNT 'Pyrenophora tritici-repentis' CLQNGTKLLRYDAKEDLVVTSNHILVLPTGWSGFKVDQDQLYLDYIVLHNS Pyrobaculum_arsenaticum CVTGDTRVLTRDGGFEIKATGDHKLLVVVYDFGV--PDYHRYIEGIVSHNC Pyrococcus_abyssi CVDYETEVVLGNGGKRIRVTPTHPFFVWVYDLQV--PGYHNFLNGIFVHNS Pyrococcus_abyssi_10 CIDGNAKIIFENEGTKILTSPWHPFFVTFYDLTV--DKYQNYLGMIFVHNT Pyrococcus_abyssi_11 CFTGDTRILTEKGGYELKVTGDHKFLVHVYDLQV--EDVHLLTNGIYTSNS Pyrococcus_abyssi_12 CVVGETRILTPEGDKQVKYETVHGNAVLVYDFTV--PEHHMYINGFMSHNC Pyrococcus_abyssi_13 CLAPGSKVLTEHGGRIIEGSEDHPVLTKFYDIGV-YHEAHNFINGIVVHNC Pyrococcus_abyssi_14 CVDGDTLVLTKEFGRKIKVTPIHKLFTEVYDVTT---ETHNFIMPTLLHNT Pyrococcus_abyssi_15 CLAPGTKVLTEHGGTLIEGSEDHPVLTRFYDIGV-YHEAHNFINGIVVHNC Pyrococcus_abyssi_2 CVAPETLIITENGGKQITVTPETKLLTHVYDLTV--EGSHSFINGFVVHNT Pyrococcus_abyssi_3 CLLPDEKVVVPSVWHGVTVTPEHPFLTYVYDLTT---ETHNFINGILVHNT Pyrococcus_abyssi_4 ALYYFSEIQLPNGGKELVLTQDHPVFVYLYDLTV--DINHNYVNGIVVSNC Pyrococcus_abyssi_5 CFSGEETVVIRENDYWFALTPDHKVYTVTYNLTT---EKGNLLNGLFVKNS Pyrococcus_abyssi_6 CFPPTEEAVFKFGGRTIRTTPEHKFFVYVYDLEV-ENEGHSFVDGILVSNC Pyrococcus_abyssi_7 CFPGDTRILVQIDGRSFETTVDHPVLVFVFSLNA--KKYHNVIENIVTHQC Pyrococcus_abyssi_8 CLTGDAKVIANGEGRELKVTPYHPLLVVIYDLHV-PKYHNFIGLPTVLHNT Pyrococcus_abyssi_9 CVTGDTKVYTPDEGRIIEATGDHMFLTDVYDVTC--ARDHSFINGLVSHNC Pyrococcus_furiosus CVAPDSLVVVNDKGKEITVTPETKLLTYVYDLTV--EGSHSFINGFVVHNT Pyrococcus_furiosus_2 CLLPEEKVVLPEIWYSVTVTPEHPFLTYVYDVTT---ETHNFVNGILVHNT Pyrococcus_furiosus_3 ALYDFSVIQLSNGGNEIILTRNHPLAFYVYDLTV--EDDHNYVNGILVSNC Pyrococcus_furiosus_4 CFSGEEVILIEKDDYWLALTPEHKVYTVTYNVTT---ETGNLLNGLFVKNS Pyrococcus_furiosus_5 CLTGDTKVIANGQGRELKVTPYHPLLVIIYDLHV--PGYHNFIMPTVVHNT Pyrococcus_furiosus_6 CIDGKAKIIFENEGTKILTSPWHPFFVTFYDLTV--ENYQNYLGMIFVHNT Pyrococcus_furiosus_7 CVVGDTRILTPEGEEKVEYETVHGRVLIVYDFTV--PNYHMYINGFMSHNC Pyrococcus_furiosus_8 CLHPDTLILTSQGGTELYLTADHPVLVKVYDLVV--ENYHNFINGIAVHNC Pyrococcus_furiosus_9 CVDGDTLILTKEFGRKIKVTPIHKLFTEVYDITT---ETHNFVMPTLLHNT Pyrococcus_horikoshii CVDYDTEVLLGDGGREIRVTPTHPFFTWVYDLQV--PEHHNFINGIFVHNS Pyrococcus_horikoshii_10 CVVGDTRILTPEGGYEIIATLDHKIMTIVYDLTV--PGIHSYINGFISHNC Pyrococcus_horikoshii_11 CFARDTEVYYENDGYSLKVTPSHPVLLWVYDLVI--PETHNFINGLVLHNT Pyrococcus_horikoshii_12 CLAPGTRVLTEHGGKVIEGSEDHPVLTKFYDIGV-YHSAHNFINGIVVHNC Pyrococcus_horikoshii_13 CVDGDTLVLTKEFGRKIKVTPIHRLFTEVYDVTT---ETHNFVMPTLLHNT Pyrococcus_horikoshii_14 CVTPDTLVSLSDGGHEIKATPDHGLLVKLYDFTT---TTENFINGIVSHNC Pyrococcus_horikoshii_2 CVAPDTLINTDNGGRSIALTRETKLLTYVYDLTV--EGSHNFVNGFIVHNT Pyrococcus_horikoshii_3 CLLPEERVILPDYWHSVAVTPEHPFLTYVYDVTT---ETHNFINGILVHNT Pyrococcus_horikoshii_4 ALYDFSIIQLSNGGNEVILTRSHPLFAYVYDLTV--EDDHNYVNGILVSNC Pyrococcus_horikoshii_5 CVSGDSKVLTEKGGFEVKCTREHRFLTPVYLDVA--YGIINSENGFVSKNS Pyrococcus_horikoshii_6 CFSGEEVIIVEKGDYWLAVTPDHKVFTVTYNVTT---ETGNLLNGLFVKNS Pyrococcus_horikoshii_7 SILPDEWLPIVENGRRIKITSGHSLFSYVYDLSV--EDNENFLGLLYAHNS Pyrococcus_horikoshii_8 CFPGDTRILVQINGSSFETTVDHPVLVFVFSLNA--KKYHTVIENIVTHQC Pyrococcus_horikoshii_9 CLTGDTKVIANGQGRELKVTPYHPLLVIIYDLHV--PGYHNFIMPTVVHNT Pyrococcus_sp_GB_D SILPEEWVPLIKNGRKITITEGHSLFVYVYDLSV--DEDENFLGFLYAHNS Rhodospirillum_centenum CVTAETWVGTAEGGLELRATADHPVRREVFDVRI--PGANAFENGLVVHNC Rhodothermus_marinus CLAGDTLITLADGGRSIRATANHRFLTEVFDLTV--PGPHNFVNDIIAHNS Roseovarius_sp_217 CVTAETWVMTDEGGRHLRLTADHLVRKEVFDVQV--PGVNAFDNGFYVHNC Saccharomyces_cariocanus CFAKGTTVLMADGLLKFTCNSTHELVVYGITLS--DDSDHQFLNQVVVHNC Saccharomyces_castellii CFAKGTEVLMADGLMNYVCSGNHKLVLYGITLP--DETDKQYLSLALVHNC Saccharomyces_castellii_2 CFAKGTEVLMADGLMNYVCSGNHKLVLYGITLP--DETDKQYLSLALVHNC Saccharomyces_cerevisiae CFAKGTNVLMADGLLKFTCNATHELVVYGITLS--DDSDHQFLNQVVVHNC Saccharomyces_cerevisiae_2 CFAKGTNVLMADGLLKFTCNATHELVVYGITLS--DDSDHQFLNQVVVHNC Saccharomyces_cerevisiae_3 CFAKGTNVLMADGLLKFTCNATHELVVYGITLS--DDSDHQFLNQVVVHNC Saccharomyces_cerevisiae_4 CFAKGTNVLMADGLLKFTCNATHELVVYGITLS--DDSDHQFLNQVVVHNC Saccharomyces_cerevisiae_5 CFAKGTNVLMADGLLKFTCNATHELVVYGITLS--DDSDHQFLNQVVVHNC Saccharomyces_dairenensis CFAKGTQVMMADGVMDYVCSGNHKLVLYGITLP--DSTDKQYLSLALVHNC Saccharomyces_exiguus CFAKGTQVMMADGLMNYVCSGNHKIVMYGITVP--DNTDKQYLSMALVHNC Saccharomyces_pastorianus CFAKGTNVLMADGLLKFTCNATHELVVYGITLS--DDSDHQFLNQVVVHNC Saccharomyces_unisporus CFEKGTEVLMADGLMDYVCSGNHKFVLYGVTLP--DATDKQYLSLALVHNC Salinibacter_sp. CLTGDQRVVTDRGGVEQKVSARHGMPVTVYCPTT-HTEESVFVQGALTFNC Salinibacter_ruber CLGKGTPVMMYDGGMDYRVNESHILSLVGDYFGFTLDGNGRFLDGTVTHNT Salinibacter_ruber_2 CFDPETEVVTVDGHTDFLVTPNHRFLTVDYDGMIHCLTVADNHKFNWTGQS Salinispora_arenicola CLTADTRLIRADTGKHIDATSNHPFLADVYDATV--LGTHNFINGIATHNS Salmonella_phage_SETP12 CLHRHTQVLTDGGVDGVLMTEDHKILTPVYDLID-VEDGNRFLGFLVAHNC Salmonella_phage_SETP3 CLKRGTEVIMFDGGESYTVNESHILSLGVDDYFGF-DGDSRFLFTVTHNTS Salmonella_phage_SETP32 CLHRHTQVLTDGGVDGVLMTEDHKILTPVYDLID-VEDGNRFLGFLVAHNC Salmonella_phage_SETP5 CLHRHTQVLTDGGVDGVLMTEDHKILTPVYDLID-VEDGNRFLGFLVAHNC Salpingoeca_rosetta CFRTTTELLLASGVEPLVVTGNHILCLPQTYYGFRIDGNQRFLDGLVVHNS Schizosaccharomyces_japonicus CFAKGTEVLMANGNLSYTCNATHKLVLYGVTLA--EDSDHQFLNLTLVHNC Shigella_flexneri ACPLNEPILLADGGRYVDCAGDHLWEVECLCIMV-DHPRHLYVGYVATHNT Spiromyces_aspiralis CLTPDHEVLTERGHVSLITTPNHRMWTKVHCIEV---PGHVFYKAVWTGNS Spirulina_platensis CLTGDALILSDRGQTEIKCTGNHLIRTHVYDIEV--EHNHNFVNGLLVHNC Spizellomyces_punctatus CLAAGTKVMVVRNSQEYTVTEGHLLSLTYFRFSV--DGYQSRFDWTVVHNC Staphylococcus_epidermidis CVTGDTELLTEKGGFKIKSTEWHKYYRDVYDTTQ--EDYHSLINGIVTGNC Staphylococcus_phage_Twort CISMDSMILTTEGGIELVNTYNHPLLVPTFDVCM--PKTHSFINTIVNHNT Staphylothermus_marinus SVSYDTPVLIRDPGGKLEATGSHSVFVYVYDISV-PITEAFFGIPILLHNT Staphylothermus_marinus_2 SYHKDFKIMLADGGAEIIVTPEHPVLIWVYDITI--EPYHLFVDGLILHNT Stigeoclonium_helveticum CLTVDHEVLTTKGNLDLLVTLNHRMYVAVYCLSV---PNEIFYLSVWTGNS Streptomyces_avermitilis AQPLDSLVLAPTGGSSVECDDEHLWIVPAQCISV-GHPSHAYVNFTVTHNT Sulfurovum_sp_NBC37_1 CLGKGTNVLMYDGGIDYRVNKSHILSLVEYDKV---DDYYGFVDMTVTHNT Synechococcus_elongatus CVTADTWVHTGEGGYSLRPTANHRVLKTVYDCTV--PGPARFDNGLVAHNC Synechococcus_elongatus_2 CVTADTWVHTGEGGYSLRLTANHRVLKTVYDCTV--PGPARFDNGLVAHNC Synechococcus_sp_JA_2_3Ba CLAGDTQVMDADRNFSIRATGNHPFLTPVYDIEM--PRHHNFVNGLLVHNS Synechococcus_sp_JA_2_3Ba_2 CVTADTWVHTGDGGFSLRLTGNHRVLKPVYDCTV--PGPACFDNGFVVHNC Synechococcus_sp_JA_3_3Ab CLAGDTRVRDVDRNFSIRATGNHPFLTPVYDIEM--PRHHNFVNGLLVHNS Synechococcus_sp_JA_3_3Ab_2 CVTADTWIHTGDGGFSLRLTGNHRVLKPVYDCTV--PGPSCFDNGLVVHNC Synechocystis_sp_PCC6803 CISGDSLISLASTGRTIKATANHRFLTEVFDLTV--PGPHNFVNDIIVHNS Synechocystis_sp_PCC68032 CLTGDSQVLTRNGNSTVRCTANHLIRTKVYDLEV--EDNHNFVNGLLVHNC Synechocystis_sp_PCC68033 CFSGDTLVALTDGGESIICTPDHKFMLDVYDIEV--PHTHNFASGVFVHNS Thermobifida_fusca CVDEETEILTTDGTHSSLTTPQHRWPVRVWCVRT--PNATWLATVYFTGNS Thermobifida_fusca_2 CLTADTYVWTDRGGRQVTVTRNHPLRVPTFDLMV--PRTHSFLNGILSHNT Thermobifida_fusca_3 CMHYDTLVTLADGGAQFTATPNHLIRTRKFDIEV--EGNHNYFDGVMVHNS Thermococcus_aggregans CHPADTKVIVKGKINGLKCTPNHKVPVEVYDLTL--EGNPYYFNGILTHNS Thermococcus_aggregans_2 SILPNEWLPIIENGRKIHITRGHSLFTYVYDLSV--EDNENFLGLLYAHNS Thermococcus_aggregans_3 SVTGDTEIIVKRNSWYIDVTEDHSLIVYVYDIEV--EGTHRFFNGILVHNT Thermococcus_barophilus CFPGDTRILVQLNGRSFETTVDHPVLVWVYSLSVA--KYHTVIDNITTSNC Thermococcus_fumicolans CHPADTKVIVKGKINGLKCTPNHKLPVKVYDLTL--EGTPYYFNGILTHNS Thermococcus_fumicolans_2 SVTGDTEVTIRRNSWYLDVTEDHSLIGYVYDIEV--EGTHRFFNGILVHNT Thermococcus_hydrothermalis SLLPEEWIPLVENGRRITVTEGHSLFAYVYDLSV--EEDENFLGLLYAHNS Thermococcus_hydrothermalis_2 SVTGETEIIIKRNSWYLDVTEDHSLIGYVYDIEV--EGTHRFFNGILVHNT Thermococcus_kodakaraensis CVAPDSIIKTNLGGLSITVTPETKLLTYVYDLTV--EGSHSFINGFVVHNT Thermococcus_kodakaraensis_10 CLTGDAKVIANGRGRELKVTPYHPLLVVIYDLHV--PGYHNFIMPTVVHNT Thermococcus_kodakaraensis_11 CIDGNAKIIFENDGTRVLTSPWHPFFVTFYDLTV--ERYQNYLGMVFVHNT Thermococcus_kodakaraensis_12 CVVGDTRVLTPEGEEEVKYETVHGKALIVYDFTV--PEHHSYINGFMSHNC Thermococcus_kodakaraensis_13 CFAKDTKVYYENDGYLLRITLLHPVLVWVYDLVI--PETHNFINGLVLHNT Thermococcus_kodakaraensis_14 CLHPDSLIPTPQGRTELYLTADHPVLVKVYDLVV--DQYHNFINGVVVHNC Thermococcus_kodakaraensis_15 CVTPDTLVSLADGGHEIKATPDHGLLVKLYDFTT---TTENFLNGAVSHNC Thermococcus_kodakaraensis_2 SYHHDFELLLADGGREITVTPEHPVMVWVYDVTV--EPHHLFVHGLVLHNT Thermococcus_kodakaraensis_3 CMHPDTYVVTKSGTVPVKITPEHMVWVDVYNLEV--EGDESYSVGFIVHNS Thermococcus_kodakaraensis_4 CLLPDEKVILPEHWHSVSVTPEHPFLTYVYDVTT---ETHNFVNGILVHNT Thermococcus_kodakaraensis_5 ALYDFSVIQLSNGGNEVILTKTHPFFVYLYDLTV--DEDHNYVNGILLSNC Thermococcus_kodakaraensis_6 CVSGDSKILTGKGGFEIKATKEHKFLTAYIDVA---YGIINSEEGFISKNS Thermococcus_kodakaraensis_7 CHPADTKVVVKGKINGLKCTPNHKLPVKVYDLTL--EGTPYYFNGILTHNS Thermococcus_kodakaraensis_8 SILPEEWLPVLEEGRRIKITSGHSLFSYVYDLSV--EDNENFLGLVYAHNS Thermococcus_kodakaraensis_9 CFPGDTRILVQINGRSFETTVDHPVLVFVFSLNA--KKYHNVIESIVTHQC Thermococcus_litoralis SILPNEWLPIIENGRKINITAGHSLFTYVYDLSV--EDNENFLGLLYAHNS Thermococcus_litoralis_2 SVSGESEIIIRQNSWYIDVTEDHSLIGYVYDIEV--EETHRFFNNILVHNT Thermococcus_marinus SLLPEEWIPVVENGRKITVTKGHSLFAYVYDLSV--EEDENFLGFLYAHNS Thermococcus_onnurineus SILPDEWVPLLIDGRKIKVTEGHSLFTYVYDLSV--EENENFLGMIYAHNS Thermococcus_peptonophilus SVTGDSEVIIRRNSWYLDVTEDHSLIGYVYDIEV--EGTHRFFNGILVHNT Thermococcus_sp_GE8 SILPDEWLPLLVNGRNIKVTEGHSLFAYVYDLSV--EENENFLGMLYAHNS Thermococcus_sp_GE82 SVAGNTEVIIRRNSWYLDVTEDHSLIGYVYDIEV--EGTHRFFNGILVHNT Thermococcus_sp_GT SLLPEEWIPLVENGRRITVTEGHSLFAYVYDLSV--EEDENFLGLLYAHNS Thermococcus_sp_GT2 SVTGETEIIIKRNSWYLDVTEDHSLIGYVYDIEV--EGTHRFFNGILVHNT Thermococcus_sp_OGL_20P SLLPEEWVPVIVGGRRIRVTTGHSLFAYVYDLSV--EEDENFLGLLYAHNS Thermococcus_thioreducens SLLPEEWVPVIVGGRRIRVTTGHSLFAYVYDLSV--EEDENFLGLLYAHNS Thermococcus_zilligii SILPDEWIPLLINGRKIKVTAGHSLFTYVYDLSV--EENENFLGMLYAHNS Thermodesulfovibrio_yellowstonii CYSSDTQVLTYSGKLDLLVTPNHRMLVKVYCVEV--PNHTLYVKACWCGNS Thermodesulfovibrio_yellowstonii_2 CLSEDTEILTLDGSQSQLISPNHRVVRGIIWSV---NTENETVQVFITGNT Thermoplasma_acidophilum CVSGDTPVLLDAGGREVRVTPVHKLFVDVYDLMV-PDYGYNFIGLIVLHNT Thermoplasma_acidophilum_2 CVSGDTPVLLDAGGREVRVTPVHKLFVDVYDLMV-PDYGYNFIGLIVLHNT Thermoplasma_volcanium CVSGETPVYLADGGRSVSVTPVHKLFVDVYDLSV-PEYGRNFIGLLVLHNT Thermus_thermophilus CLAEGSLVLDAATGRTLVLTPDHPLLTRTFDLRV--PPFANFVEDLVVHNS Thermus_thermophilus_2 CLPARARVVDWCTGRVLEATANHPVYTEVFDLTV--EGTHTFVEDVIVHNS Thermus_thermophilus_3 CLHPDTLVHTDRGGLEVQGTLNHKLKVLTLDLSV--EGNHTYLNGLVSHNT Thermus_thermophilus_4 CFVGSTRIPTERGGLEVTLTPDHLLLTPVYDLTE--PVTHSLINGLVAHNC Thermus_thermophilus_5 CLAEGSLVLDAATGRTLVLTPDHPLLTRTFDLRV--PPFANFVEDLVVHNS Thermus_thermophilus_6 CLPARARVVDWCTGRVLEATANHPVYTEVFDLTV--EGTHTFVEDVIVHNS Thermus_thermophilus_7 CLHPDTLVHTDRGGLEVQGTLNHKLKVILTLDLS--EGNHTYLNGLVSHNT Thermus_thermophilus_8 CFVGSTRIPTERGGLEVTLTPDHLLLTPVYDLTE--PVTHSLINGLVAHNC Torulaspora_globosa CFAKGTPVMMHDGLFEYTCNATHKLVVYGITLS--ENSDHQFMNQLVVHNC Torulaspora_pretoriensis CFAKGTKVLLHDGLFEYTCNATHKLVVYGLTLA--NGTDHQFMNQLVVHNC Trichodesmium_erythraeum CAAYDTLVLQKDGGRFVETTITHPFLTQVYDLTV--PETHNFVNDICLHNT Trichodesmium_erythraeum_10 CVSGDTLLITRDSGSYLDVTEYHRFFVGLHDTYC--FEEPEFHGNALTGNC Trichodesmium_erythraeum_11 CLDKTALRIFNQGGRKLRMTPNHRMSVYSYDFAI--EGINDNDGALKSHNT Trichodesmium_erythraeum_12 CVLHDTEIYVNGMGSSITITCRHKLFIWVYDFEV--SKYHNFVNNIICHNT Trichodesmium_erythraeum_13 CLSGNTKVRFRYSGKEIRATLEHQFWTITYDLEV-EHPEHNFINGLVVHNS Trichodesmium_erythraeum_2 CLTGESLICLADGGKLIRATANHPFFSEVFDLTV--PGLHNFVNEIVVHNS Trichodesmium_erythraeum_3 CLPKGTLIDQPDGGTVIYSGKNHRFLTECFDLEMEDQSSPYFLEGVVVHNC Trichodesmium_erythraeum_4 CLSGSTKVIDAATNRKVCATDDHLFYTEVFDLTI--PETHNFINDFIVHNC Trichodesmium_erythraeum_5 CFAGNQKVILADGNETIICTPDHLFMLDVYDIEV--PHTHNFASGVFVHNS Trichodesmium_erythraeum_6 CFDSKTEILTEAGHRDFCVTPNHWMYVKVYCVNV--TNHVVFVRAAWCGQC Trichodesmium_erythraeum_7 SLTGDQKVLYYIAGKQIKITEDHSLFTYVYDFSV--PNYENFIYNVFAHNT Trichodesmium_erythraeum_8 CLPEGALVHTASGDGYFECTPDHKVAVSTYDIEV--ASIHEFVQGILVSNS Trichodesmium_erythraeum_9 CHSGDTLVSTDQGGMQMRCTGDHQHFTVVYDLHV--PLTNSFINGCLTHNC Uncinocarpus_reesii CLAKGTRLLRYDRVEDLVVTPNHILVFETEWAGFRVDQDQLYLDYLVLHNS uncultured_archaeon_GZfos_10C7 SLPGDEKILIKSGGKKVRVTAGHNFFCETYDIAT-DTSTQNFIGFLFVHNT uncultured_archaeon_GZfos_13E1 CFTGNTEISTDRGSDAISCTLNHEFFVKVYNLEI-DNPTHSYNNLISVSNC uncultured_archaeon_GZfos_9C4 CVTADTWVTTAEGGFELRLTADHPVMKKVYDVKI--PGINAFNNGFVVHNC uncultured_archaeon_Rice_Cluster_I SYHPLTEILLADGDREIIVTPEHPVFIYVYDVTV--EPYHCFVQGVILHNS Vanderwaltozyma_polyspora CFAKGTEVMMADSLFSFVCNATHQLIVYGITLP--EYSDHQFMNQVVVHNC Kluyveromyces_lactis_VMA CFSKGTEVMMGDGKISFQCNSSHKLVLFGVTLA--EESDHKFLNMTLVHNC Wiseana_iridescent_virus CVVGETLILTENGGIFIVCTEYHRFLVNTYCFT--EQLNNAGVNGILTSNC Zygosaccharomyces_bailii CFAKGTEVMMHDGLFEYNCNATHKLVVYGITLA--KESDHQFLNQLVVHNC Zygosaccharomyces_bisporus CFAKGTEVMMSDALSEYTCNATHKLVVYGLTLS--NDSDHQFLNQLVVHNC Zygosaccharomyces_rouxii CFAKGTEVMMSDGLFEYTCNATHKLVVYGLTLS--NESDHQFLNQLVVHNC ; END; BEGIN TREES; Title Intein_splicing_motifs_BIONJ; LINK Taxa = Taxa; TRANSLATE 1 Acanthomoeba_polyphaga_Mimivirus, 2 Acidothermus_cellulolyticus, 3 Acidovorax_avenae, 4 Acidovorax_avenae_2, 5 Acinetobacter_baumannii, 6 Acyrthosiphon_pisum_secondary_endosymbiot_phage_1, 7 Aeropyrum_pernix, 8 Ajellomyces_capsulatus, 9 Ajellomyces_capsulatus_2, 10 Ajellomyces_dermatitidis, 11 Ajellomyces_dermatitidis_2, 12 Alkalilimnicola_ehrlichei, 13 Alkalilimnicola_ehrlichei_2, 14 Alkalilimnicola_ehrlichei_3, 15 Alteromonas_macleodii, 16 Aquifex_aeolicus, 17 Arthrobacter_sp_FB24, 18 Aspergillus_brevipes, 19 Aspergillus_fumigatus, 20 Aspergillus_fumigatus_2, 21 Aspergillus_fumigatus_3, 22 Aspergillus_giganteus, 23 Aspergillus_nidulans, 24 Aspergillus_viridinutans_FRR0577, 25 Azotobacter_vinelandii, 26 Bacillus_sp., 27 Bacillus_subtilis, 28 Bacteriophage_Aaphi_23_Haemophilus_phage_Aaphi_23, 29 Bacteriophage_APSE_2, 30 Bacteriophage_APSE_5, 31 Bacteriophage_of_Candidatus_Hamiltonella_defensa_5ATac_endosymbiot_of_Acyrthosiphon_pisum, 32 Bathycoccus_tropical_Atlantic_Metagenome, 33 Bathycoccus_tropical_Atlantic_PCRproduct, 34 Batrachochytrium_dendrobatidis, 35 Batrachochytrium_dendrobatidis_2, 36 Batrachochytrium_dendrobatidis_3, 37 Batrachochytrium_dendrobatidis_4, 38 Batrachochytrium_dendrobatidis_5, 39 Botrytis_cinerea, 40 Burkholderia_sp., 41 Burkholderia_cenocepacia, 42 Burkholderia_vietnamiensis, 43 Candida_glabrata, 44 Candida_parapsilosis, 45 Candida_tropicalis, 46 Candida_tropicalis_2, 47 Candidatus_Desulforudis_audaxviator, 48 Candidatus_Methanoregula_boonei, 49 Capsaspora_owczarzaki, 50 Capsaspora_owczarzaki_2, 51 Capsaspora_owczarzaki_3, 52 Carboxydothermus_hydrogenoformans, 53 Chilo_iridescent_virus, 54 Chlamydomonas_eugametos, 55 Chlamydomonas_moewusii, 56 Chlamydomonas_moewusii_2, 57 Chlamydomonas_reinhardtii, 58 Chlorella_virus_PbCV_NY2A, 59 Chlorella_virus_PbCV_NY2A2, 60 Chlorobium_chlorochromatii, 61 Chlorochromatium_aggregatum, 62 Chloroflexus_aurantiacus, 63 Clostridium_botulinum_phage_C_St, 64 Clostridium_botulinum_phage_D, 65 Clostridium_kluyveri, 66 Clostridium_thermocellum, 67 Clostridium_thermocellum_2, 68 Coelomomyces_stegomyiae, 69 Corynebacterium_phage_P1201, 70 Costelytra_zealandica_iridescent_virus, 71 Coxiella_burnetii, 72 Coxiella_burnetii_2, 73 Coxiella_burnetii_3, 74 Coxiella_burnetii_4, 75 Crocosphaera_watsonii, 76 Crocosphaera_watsonii_2, 77 Crocosphaera_watsonii_3, 78 Cryptococcus_bacillisporus, 79 Cryptococcus_bacillisporus_2, 80 Cryptococcus_gattii, 81 Cryptococcus_laurentii, 82 Cryptococcus_neoformans, 83 Cryptococcus_neoformans_2, 84 Cryptococcus_neoformans_3, 85 Cyanothece_sp_ATCC_51142, 86 Cyanothece_sp_CCY0110, 87 Cyanothece_sp_CCY01102, 88 Debaryomyces_hansenii, 89 Debaryomyces_hansenii_2, 90 Deinococcus_geothermalis, 91 Deinococcus_radiodurans, 92 Deinococcus_radiodurans_2, 93 Desulfitobacterium_hafniense, 94 Desulfitobacterium_hafniense_2, 95 Desulfovibrio_vulgaris, 96 Dictyoglomus_thermophilum, 97 Dictyostelium_discoideum, 98 DnaB_Nostoc_punctiforme, 99 Emericella_nidulans, 100 Emericella_nidulans_2, 101 Enterobacteria_phage_Min_27, 102 Ferroplasma_acidarmanus, 103 Ferroplasma_acidarmanus_2, 104 Ferroplasma_acidarmanus_3, 105 Ferroplasma_acidarmanus_4, 106 Floydiella_terrestris, 107 Frankia_sp., 108 Frankia_alni, 109 Gemmata_obscuriglobus, 110 Gemmata_obscuriglobus_2, 111 Gloeobacter_violaceus, 112 Gloeobacter_violaceus_2, 113 Gloeobacter_violaceus_3, 114 Guillardia_theta_Gth_DnaB, 115 Haloarcula_marismortui, 116 Haloarcula_marismortui_2, 117 Haloarcula_marismortui_3, 118 Haloarcula_marismortui_4, 119 Halobacterium_salinarum, 120 Halobacterium_salinarum_2, 121 Halobacterium_sp_NRC_1, 122 Haloferax_volcanii, 123 Haloquadratum_walsbyi, 124 Haloquadratum_walsbyi_10, 125 Haloquadratum_walsbyi_11, 126 Haloquadratum_walsbyi_12, 127 Haloquadratum_walsbyi_13, 128 Haloquadratum_walsbyi_14, 129 Haloquadratum_walsbyi_15, 130 Haloquadratum_walsbyi_2, 131 Haloquadratum_walsbyi_3, 132 Haloquadratum_walsbyi_4, 133 Haloquadratum_walsbyi_5, 134 Haloquadratum_walsbyi_6, 135 Haloquadratum_walsbyi_7, 136 Haloquadratum_walsbyi_8, 137 Haloquadratum_walsbyi_9, 138 Halorhabdus_utahensis, 139 Halorhabdus_utahensis_2, 140 Halorhodospira_halophila, 141 Heterosigma_akashiwo_virus, 142 Histoplasma_capsulatum, 143 Invertebrate_iridescent_virus_6, 144 Kazachstania_exigua, 145 Kineococcus_radiotolerans, 146 Kluyveromyces_lactis, 147 Kluyveromyces_lactis_2, 148 Lactococcus_phage_KSY1, 149 Listonella_pelagia_phage_phiHSIC, 150 Lodderomyces_elongisporus, 151 Magnetospirillum_magnetotacticum, 152 Methanococcus_aeolicus, 153 Methanococcus_aeolicus_2, 154 Methanococcus_aeolicus_3, 155 Methanococcus_aeolicus_4, 156 Methanococcus_aeolicus_5, 157 Methanococcus_aeolicus_6, 158 Methanococcus_jannaschii, 159 Methanococcus_jannaschii_10, 160 Methanococcus_jannaschii_11, 161 Methanococcus_jannaschii_12, 162 Methanococcus_jannaschii_13, 163 Methanococcus_jannaschii_14, 164 Methanococcus_jannaschii_15, 165 Methanococcus_jannaschii_16, 166 Methanococcus_jannaschii_17, 167 Methanococcus_jannaschii_18, 168 Methanococcus_jannaschii_19, 169 Methanococcus_jannaschii_2, 170 Methanococcus_jannaschii_3, 171 Methanococcus_jannaschii_4, 172 Methanococcus_jannaschii_5, 173 Methanococcus_jannaschii_6, 174 Methanococcus_jannaschii_7, 175 Methanococcus_jannaschii_8, 176 Methanococcus_jannaschii_9, 177 Methanoculleus_marisnigri, 178 Methanoculleus_marisnigri_2, 179 Methanopyrus_kandleri, 180 Methanopyrus_kandleri_2, 181 Methanopyrus_kandleri_3, 182 Methanopyrus_kandleri_4, 183 Methanopyrus_kandleri_5, 184 Methanospirillum_hungateii, 185 Methanothermobacter_thermautotrophicus, 186 Methylobacterium_extorquens, 187 Methylobacterium_extorquens_2, 188 Methylococcus_capsulatus, 189 Methylococcus_capsulatus_Bath_prophage_MuMc_02, 190 Microcoleus_chthonoplastes, 191 Microcystis_aeruginosa, 192 Mycobacteriophage, 193 Mycobacteriophage_2, 194 Mycobacteriophage_3, 195 Mycobacteriophage_Bethlehem, 196 Mycobacteriophage_Bethlehem_2, 197 Mycobacteriophage_catera, 198 Mycobacterium_avium, 199 Mycobacterium_avium_2, 200 Mycobacterium_avium_3, 201 Mycobacterium_bovis, 202 Mycobacterium_bovis_2, 203 Mycobacterium_bovis_3, 204 Mycobacterium_bovis_4, 205 Mycobacterium_bovis_5, 206 Mycobacterium_chitae, 207 Mycobacterium_fallax, 208 Mycobacterium_flavescens, 209 Mycobacterium_flavescens_2, 210 Mycobacterium_flavescens_3, 211 Mycobacterium_flavescens_4, 212 Mycobacterium_gastri, 213 Mycobacterium_gastri_2, 214 Mycobacterium_gastri_3, 215 Mycobacterium_gilvum, 216 Mycobacterium_gilvum_2, 217 Mycobacterium_gordonae, 218 Mycobacterium_intracellulare, 219 Mycobacterium_kansasii, 220 Mycobacterium_leprae, 221 Mycobacterium_leprae_2, 222 Mycobacterium_leprae_3, 223 Mycobacterium_leprae_4, 224 Mycobacterium_malmoense, 225 Mycobacterium_shimodei, 226 Mycobacterium_smegmatis, 227 Mycobacterium_smegmatis_2, 228 Mycobacterium_species, 229 Mycobacterium_species_2, 230 Mycobacterium_species_3, 231 Mycobacterium_species_4, 232 Mycobacterium_thermoresistibile, 233 Mycobacterium_tuberculosis, 234 Mycobacterium_tuberculosis_2, 235 Mycobacterium_tuberculosis_3, 236 Mycobacterium_tuberculosis_4, 237 Mycobacterium_tuberculosis_5, 238 Mycobacterium_tuberculosis_6, 239 Mycobacterium_tuberculosis_7, 240 Mycobacterium_vanbaalenii, 241 Mycobacterium_vanbaalenii_2, 242 Mycobacterium_xenopi, 243 Myxococcus_xanthus, 244 Natronomonas_pharaonis, 245 Natronomonas_pharaonis_2, 246 Natronomonas_pharaonis_3, 247 Natronomonas_pharaonis_4, 248 Neosartorya_aurata, 249 Neosartorya_fennelliae, 250 Neosartorya_fischeri, 251 Neosartorya_glabra, 252 Neosartorya_glabra_2, 253 Neosartorya_quadricincta, 254 Neosartorya_spinosa, 255 Nocardia_farcinica, 256 Nocardia_farcinica_2, 257 Nocardia_farcinica_3, 258 Nocardioides_sp_JS614, 259 Nocardioides_sp_JS6142, 260 Nostoc_punctiforme, 261 Nostoc_sp_PCC7120, 262 Nostoc_sp_PCC71202, 263 Paracoccidioides_brasiliensis, 264 Pelodictyon_luteolum, 265 Penicillium_chrysogenum, 266 Penicillium_expansum, 267 Penicillium_vulpinum, 268 Phaeosphaeria_nodorum, 269 Phaeosphaeria_nodorum_2, 270 Phycomyces_blakesleeanus, 271 Phycomyces_blakesleeanus_2, 272 Pichia_guilliermondii, 273 Pichia_guilliermondii_2, 274 Pichia_stipitis, 275 Picrophilus_torridus, 276 Podospora_anserina, 277 Podospora_anserina_2, 278 Polaromonas_naphthalenivorans, 279 Polaromonas_sp_JS666, 280 Polaromonas_sp_JS6662, 281 Polynucleobacter_sp_QLW_P1DMWA, 282 Porphyra_purpurea, 283 Porphyra_yezoensis, 284 Pseudomonas_aeruginosa_phage_phiEL, 285 Pseudomonas_aeruginosa_phage_phiEL2, 286 Pseudomonas_aeruginosa_phage_phiEL3, 287 Pseudomonas_aeruginosa_phage_phiEL4, 288 Pseudomonas_fluorescens, 289 Pseudomonas_sp_A1_1, 290 Pseudomonas_syringae, 291 'Pyrenophora tritici-repentis', 292 Pyrobaculum_arsenaticum, 293 Pyrococcus_abyssi, 294 Pyrococcus_abyssi_10, 295 Pyrococcus_abyssi_11, 296 Pyrococcus_abyssi_12, 297 Pyrococcus_abyssi_13, 298 Pyrococcus_abyssi_14, 299 Pyrococcus_abyssi_15, 300 Pyrococcus_abyssi_2, 301 Pyrococcus_abyssi_3, 302 Pyrococcus_abyssi_4, 303 Pyrococcus_abyssi_5, 304 Pyrococcus_abyssi_6, 305 Pyrococcus_abyssi_7, 306 Pyrococcus_abyssi_8, 307 Pyrococcus_abyssi_9, 308 Pyrococcus_furiosus, 309 Pyrococcus_furiosus_2, 310 Pyrococcus_furiosus_3, 311 Pyrococcus_furiosus_4, 312 Pyrococcus_furiosus_5, 313 Pyrococcus_furiosus_6, 314 Pyrococcus_furiosus_7, 315 Pyrococcus_furiosus_8, 316 Pyrococcus_furiosus_9, 317 Pyrococcus_horikoshii, 318 Pyrococcus_horikoshii_10, 319 Pyrococcus_horikoshii_11, 320 Pyrococcus_horikoshii_12, 321 Pyrococcus_horikoshii_13, 322 Pyrococcus_horikoshii_14, 323 Pyrococcus_horikoshii_2, 324 Pyrococcus_horikoshii_3, 325 Pyrococcus_horikoshii_4, 326 Pyrococcus_horikoshii_5, 327 Pyrococcus_horikoshii_6, 328 Pyrococcus_horikoshii_7, 329 Pyrococcus_horikoshii_8, 330 Pyrococcus_horikoshii_9, 331 Pyrococcus_sp_GB_D, 332 Rhodospirillum_centenum, 333 Rhodothermus_marinus, 334 Roseovarius_sp_217, 335 Saccharomyces_cariocanus, 336 Saccharomyces_castellii, 337 Saccharomyces_castellii_2, 338 Saccharomyces_cerevisiae, 339 Saccharomyces_cerevisiae_2, 340 Saccharomyces_cerevisiae_3, 341 Saccharomyces_cerevisiae_4, 342 Saccharomyces_cerevisiae_5, 343 Saccharomyces_dairenensis, 344 Saccharomyces_exiguus, 345 Saccharomyces_pastorianus, 346 Saccharomyces_unisporus, 347 Salinibacter_sp., 348 Salinibacter_ruber, 349 Salinibacter_ruber_2, 350 Salinispora_arenicola, 351 Salmonella_phage_SETP12, 352 Salmonella_phage_SETP3, 353 Salmonella_phage_SETP32, 354 Salmonella_phage_SETP5, 355 Salpingoeca_rosetta, 356 Schizosaccharomyces_japonicus, 357 Shigella_flexneri, 358 Spiromyces_aspiralis, 359 Spirulina_platensis, 360 Spizellomyces_punctatus, 361 Staphylococcus_epidermidis, 362 Staphylococcus_phage_Twort, 363 Staphylothermus_marinus, 364 Staphylothermus_marinus_2, 365 Stigeoclonium_helveticum, 366 Streptomyces_avermitilis, 367 Sulfurovum_sp_NBC37_1, 368 Synechococcus_elongatus, 369 Synechococcus_elongatus_2, 370 Synechococcus_sp_JA_2_3Ba, 371 Synechococcus_sp_JA_2_3Ba_2, 372 Synechococcus_sp_JA_3_3Ab, 373 Synechococcus_sp_JA_3_3Ab_2, 374 Synechocystis_sp_PCC6803, 375 Synechocystis_sp_PCC68032, 376 Synechocystis_sp_PCC68033, 377 Thermobifida_fusca, 378 Thermobifida_fusca_2, 379 Thermobifida_fusca_3, 380 Thermococcus_aggregans, 381 Thermococcus_aggregans_2, 382 Thermococcus_aggregans_3, 383 Thermococcus_barophilus, 384 Thermococcus_fumicolans, 385 Thermococcus_fumicolans_2, 386 Thermococcus_hydrothermalis, 387 Thermococcus_hydrothermalis_2, 388 Thermococcus_kodakaraensis, 389 Thermococcus_kodakaraensis_10, 390 Thermococcus_kodakaraensis_11, 391 Thermococcus_kodakaraensis_12, 392 Thermococcus_kodakaraensis_13, 393 Thermococcus_kodakaraensis_14, 394 Thermococcus_kodakaraensis_15, 395 Thermococcus_kodakaraensis_2, 396 Thermococcus_kodakaraensis_3, 397 Thermococcus_kodakaraensis_4, 398 Thermococcus_kodakaraensis_5, 399 Thermococcus_kodakaraensis_6, 400 Thermococcus_kodakaraensis_7, 401 Thermococcus_kodakaraensis_8, 402 Thermococcus_kodakaraensis_9, 403 Thermococcus_litoralis, 404 Thermococcus_litoralis_2, 405 Thermococcus_marinus, 406 Thermococcus_onnurineus, 407 Thermococcus_peptonophilus, 408 Thermococcus_sp_GE8, 409 Thermococcus_sp_GE82, 410 Thermococcus_sp_GT, 411 Thermococcus_sp_GT2, 412 Thermococcus_sp_OGL_20P, 413 Thermococcus_thioreducens, 414 Thermococcus_zilligii, 415 Thermodesulfovibrio_yellowstonii, 416 Thermodesulfovibrio_yellowstonii_2, 417 Thermoplasma_acidophilum, 418 Thermoplasma_acidophilum_2, 419 Thermoplasma_volcanium, 420 Thermus_thermophilus, 421 Thermus_thermophilus_2, 422 Thermus_thermophilus_3, 423 Thermus_thermophilus_4, 424 Thermus_thermophilus_5, 425 Thermus_thermophilus_6, 426 Thermus_thermophilus_7, 427 Thermus_thermophilus_8, 428 Torulaspora_globosa, 429 Torulaspora_pretoriensis, 430 Trichodesmium_erythraeum, 431 Trichodesmium_erythraeum_10, 432 Trichodesmium_erythraeum_11, 433 Trichodesmium_erythraeum_12, 434 Trichodesmium_erythraeum_13, 435 Trichodesmium_erythraeum_2, 436 Trichodesmium_erythraeum_3, 437 Trichodesmium_erythraeum_4, 438 Trichodesmium_erythraeum_5, 439 Trichodesmium_erythraeum_6, 440 Trichodesmium_erythraeum_7, 441 Trichodesmium_erythraeum_8, 442 Trichodesmium_erythraeum_9, 443 Uncinocarpus_reesii, 444 uncultured_archaeon_GZfos_10C7, 445 uncultured_archaeon_GZfos_13E1, 446 uncultured_archaeon_GZfos_9C4, 447 uncultured_archaeon_Rice_Cluster_I, 448 Vanderwaltozyma_polyspora, 449 Kluyveromyces_lactis_VMA, 450 Wiseana_iridescent_virus, 451 Zygosaccharomyces_bailii, 452 Zygosaccharomyces_bisporus, 453 Zygosaccharomyces_rouxii; TREE tree1 = ((((((((((402,(305,329)),383),152),(((48,184),178),((120,134),116))),((112,295),183)),(((221,(((229,231),217),((((212,224),219),208),(241,216)))),242),((426,422),378)),((((((((((((337,336),346),343),(144,344)),((356,274),43)),(((89,448),(((345,342),((338,339),(341,340))),335)),((453,452),((451,428),429)))),((146,449),147)),(46,150)),35),(((((273,272),88),268),276),277)),(((((((((100,(23,99)),((((((252,254),(18,24)),253),((443,248),265)),(251,250),((((21,(20,19)),249),((142,((11,10),(9,8))),263)),(267,266))),22)),(291,((((78,79),80),82),(84,83)))),39),81),(33,32)),((271,(270,355)),36)),((((149,352),((367,348),58)),5),((51,50),38))),360)),49),(((239,(202,238)),(424,420)),(110,95)),(((430,(75,140)),((111,90),12)),((145,350),((255,(((204,205),(234,235)),(236,237))),227))),(((172,((398,(310,325)),302)),(393,315)),(158,433)),(((((((56,(106,365)),(54,55)),(358,68)),269),((57,(44,45)),347)),((69,(415,(177,439))),((245,349),(137,(117,246)))),(((3,377),416),(196,194))),(148,16)),((((((((((((215,211),240),((108,(226,220)),258)),((200,(198,199)),218)),(230,228)),195),((17,67),65)),((193,197),192)),15),((((((((287,285),284),286),(281,((41,40),279))),187),(101,357)),(92,366)),42)),259),((441,262),136)),(((((59,(450,70)),((77,(53,143)),431)),((361,(26,27)),278)),((326,399),52)),(((318,((391,314),296)),292),(104,102))),((((320,(299,297)),182),(163,156)),(243,62)),((((87,85),(76,173)),445),304),((126,((400,384),(380,174))),223),((((351,353),354),(((29,6),31),30)),(((60,61),264),(423,427))),((293,317),((((138,(115,244)),(119,121)),130),((447,(395,364)),133))),((((313,294),390),432),(169,155)),((((74,((72,71),73)),13),(((333,374),((261,98),191)),435)),((421,425),(437,190))),(((175,((((328,401),(381,403)),((406,414),408)),((412,413),(331,((410,386),405))))),(161,154)),(((162,164),444),440)),((((((((93,94),334),14),(332,446)),47),(((371,373),113),(369,368))),((188,(4,280)),91)),185),((151,257),((288,(289,290)),66)),(((166,(322,394)),(37,34)),(97,(307,(153,160)))),(434,109),(362,131),((139,132),((123,(438,376)),(86,260))),((((((404,(411,387)),(385,(409,407))),382),(141,1)),(((181,159),363),(7,128))),135),(((((308,388),300),323),180),(((((324,(309,397)),301),171),((303,311),327)),(392,319))),(((157,165),((64,63),96)),((247,129),168)),(((214,(372,370)),(359,375)),442),(((((((222,225),(206,210)),(209,207)),232),213),379),127),((114,(283,282)),(189,(256,28))),(179,167),((((321,298),316),((419,(418,417)),275)),(((306,((312,330),389)),176),125)),((124,122),118),(186,436)),((((203,201),233),(105,103)),(107,2))),25),170),396); END; BEGIN TREES; Title 'Intein splicing motifs approx-MLT'; LINK Taxa = Taxa; TRANSLATE 1 Acanthomoeba_polyphaga_Mimivirus, 2 Acidothermus_cellulolyticus, 3 Acidovorax_avenae, 4 Acidovorax_avenae_2, 5 Acinetobacter_baumannii, 6 Acyrthosiphon_pisum_secondary_endosymbiot_phage_1, 7 Aeropyrum_pernix, 8 Ajellomyces_capsulatus, 9 Ajellomyces_capsulatus_2, 10 Ajellomyces_dermatitidis, 11 Ajellomyces_dermatitidis_2, 12 Alkalilimnicola_ehrlichei, 13 Alkalilimnicola_ehrlichei_2, 14 Alkalilimnicola_ehrlichei_3, 15 Alteromonas_macleodii, 16 Aquifex_aeolicus, 17 Arthrobacter_sp_FB24, 18 Aspergillus_brevipes, 19 Aspergillus_fumigatus, 20 Aspergillus_fumigatus_2, 21 Aspergillus_fumigatus_3, 22 Aspergillus_giganteus, 23 Aspergillus_nidulans, 24 Aspergillus_viridinutans_FRR0577, 25 Azotobacter_vinelandii, 26 Bacillus_sp., 27 Bacillus_subtilis, 28 Bacteriophage_Aaphi_23_Haemophilus_phage_Aaphi_23, 29 Bacteriophage_APSE_2, 30 Bacteriophage_APSE_5, 31 Bacteriophage_of_Candidatus_Hamiltonella_defensa_5ATac_endosymbiot_of_Acyrthosiphon_pisum, 32 Bathycoccus_tropical_Atlantic_Metagenome, 33 Bathycoccus_tropical_Atlantic_PCRproduct, 34 Batrachochytrium_dendrobatidis, 35 Batrachochytrium_dendrobatidis_2, 36 Batrachochytrium_dendrobatidis_3, 37 Batrachochytrium_dendrobatidis_4, 38 Batrachochytrium_dendrobatidis_5, 39 Botrytis_cinerea, 40 Burkholderia_sp., 41 Burkholderia_cenocepacia, 42 Burkholderia_vietnamiensis, 43 Candida_glabrata, 44 Candida_parapsilosis, 45 Candida_tropicalis, 46 Candida_tropicalis_2, 47 Candidatus_Desulforudis_audaxviator, 48 Candidatus_Methanoregula_boonei, 49 Capsaspora_owczarzaki, 50 Capsaspora_owczarzaki_2, 51 Capsaspora_owczarzaki_3, 52 Carboxydothermus_hydrogenoformans, 53 Chilo_iridescent_virus, 54 Chlamydomonas_eugametos, 55 Chlamydomonas_moewusii, 56 Chlamydomonas_moewusii_2, 57 Chlamydomonas_reinhardtii, 58 Chlorella_virus_PbCV_NY2A, 59 Chlorella_virus_PbCV_NY2A2, 60 Chlorobium_chlorochromatii, 61 Chlorochromatium_aggregatum, 62 Chloroflexus_aurantiacus, 63 Clostridium_botulinum_phage_C_St, 64 Clostridium_botulinum_phage_D, 65 Clostridium_kluyveri, 66 Clostridium_thermocellum, 67 Clostridium_thermocellum_2, 68 Coelomomyces_stegomyiae, 69 Corynebacterium_phage_P1201, 70 Costelytra_zealandica_iridescent_virus, 71 Coxiella_burnetii, 72 Coxiella_burnetii_2, 73 Coxiella_burnetii_3, 74 Coxiella_burnetii_4, 75 Crocosphaera_watsonii, 76 Crocosphaera_watsonii_2, 77 Crocosphaera_watsonii_3, 78 Cryptococcus_bacillisporus, 79 Cryptococcus_bacillisporus_2, 80 Cryptococcus_gattii, 81 Cryptococcus_laurentii, 82 Cryptococcus_neoformans, 83 Cryptococcus_neoformans_2, 84 Cryptococcus_neoformans_3, 85 Cyanothece_sp_ATCC_51142, 86 Cyanothece_sp_CCY0110, 87 Cyanothece_sp_CCY01102, 88 Debaryomyces_hansenii, 89 Debaryomyces_hansenii_2, 90 Deinococcus_geothermalis, 91 Deinococcus_radiodurans, 92 Deinococcus_radiodurans_2, 93 Desulfitobacterium_hafniense, 94 Desulfitobacterium_hafniense_2, 95 Desulfovibrio_vulgaris, 96 Dictyoglomus_thermophilum, 97 Dictyostelium_discoideum, 98 DnaB_Nostoc_punctiforme, 99 Emericella_nidulans, 100 Emericella_nidulans_2, 101 Enterobacteria_phage_Min_27, 102 Ferroplasma_acidarmanus, 103 Ferroplasma_acidarmanus_2, 104 Ferroplasma_acidarmanus_3, 105 Ferroplasma_acidarmanus_4, 106 Floydiella_terrestris, 107 Frankia_sp., 108 Frankia_alni, 109 Gemmata_obscuriglobus, 110 Gemmata_obscuriglobus_2, 111 Gloeobacter_violaceus, 112 Gloeobacter_violaceus_2, 113 Gloeobacter_violaceus_3, 114 Guillardia_theta_Gth_DnaB, 115 Haloarcula_marismortui, 116 Haloarcula_marismortui_2, 117 Haloarcula_marismortui_3, 118 Haloarcula_marismortui_4, 119 Halobacterium_salinarum, 120 Halobacterium_salinarum_2, 121 Halobacterium_sp_NRC_1, 122 Haloferax_volcanii, 123 Haloquadratum_walsbyi, 124 Haloquadratum_walsbyi_10, 125 Haloquadratum_walsbyi_11, 126 Haloquadratum_walsbyi_12, 127 Haloquadratum_walsbyi_13, 128 Haloquadratum_walsbyi_14, 129 Haloquadratum_walsbyi_15, 130 Haloquadratum_walsbyi_2, 131 Haloquadratum_walsbyi_3, 132 Haloquadratum_walsbyi_4, 133 Haloquadratum_walsbyi_5, 134 Haloquadratum_walsbyi_6, 135 Haloquadratum_walsbyi_7, 136 Haloquadratum_walsbyi_8, 137 Haloquadratum_walsbyi_9, 138 Halorhabdus_utahensis, 139 Halorhabdus_utahensis_2, 140 Halorhodospira_halophila, 141 Heterosigma_akashiwo_virus, 142 Histoplasma_capsulatum, 143 Invertebrate_iridescent_virus_6, 144 Kazachstania_exigua, 145 Kineococcus_radiotolerans, 146 Kluyveromyces_lactis, 147 Kluyveromyces_lactis_2, 148 Lactococcus_phage_KSY1, 149 Listonella_pelagia_phage_phiHSIC, 150 Lodderomyces_elongisporus, 151 Magnetospirillum_magnetotacticum, 152 Methanococcus_aeolicus, 153 Methanococcus_aeolicus_2, 154 Methanococcus_aeolicus_3, 155 Methanococcus_aeolicus_4, 156 Methanococcus_aeolicus_5, 157 Methanococcus_aeolicus_6, 158 Methanococcus_jannaschii, 159 Methanococcus_jannaschii_10, 160 Methanococcus_jannaschii_11, 161 Methanococcus_jannaschii_12, 162 Methanococcus_jannaschii_13, 163 Methanococcus_jannaschii_14, 164 Methanococcus_jannaschii_15, 165 Methanococcus_jannaschii_16, 166 Methanococcus_jannaschii_17, 167 Methanococcus_jannaschii_18, 168 Methanococcus_jannaschii_19, 169 Methanococcus_jannaschii_2, 170 Methanococcus_jannaschii_3, 171 Methanococcus_jannaschii_4, 172 Methanococcus_jannaschii_5, 173 Methanococcus_jannaschii_6, 174 Methanococcus_jannaschii_7, 175 Methanococcus_jannaschii_8, 176 Methanococcus_jannaschii_9, 177 Methanoculleus_marisnigri, 178 Methanoculleus_marisnigri_2, 179 Methanopyrus_kandleri, 180 Methanopyrus_kandleri_2, 181 Methanopyrus_kandleri_3, 182 Methanopyrus_kandleri_4, 183 Methanopyrus_kandleri_5, 184 Methanospirillum_hungateii, 185 Methanothermobacter_thermautotrophicus, 186 Methylobacterium_extorquens, 187 Methylobacterium_extorquens_2, 188 Methylococcus_capsulatus, 189 Methylococcus_capsulatus_Bath_prophage_MuMc_02, 190 Microcoleus_chthonoplastes, 191 Microcystis_aeruginosa, 192 Mycobacteriophage, 193 Mycobacteriophage_2, 194 Mycobacteriophage_3, 195 Mycobacteriophage_Bethlehem, 196 Mycobacteriophage_Bethlehem_2, 197 Mycobacteriophage_catera, 198 Mycobacterium_avium, 199 Mycobacterium_avium_2, 200 Mycobacterium_avium_3, 201 Mycobacterium_bovis, 202 Mycobacterium_bovis_2, 203 Mycobacterium_bovis_3, 204 Mycobacterium_bovis_4, 205 Mycobacterium_bovis_5, 206 Mycobacterium_chitae, 207 Mycobacterium_fallax, 208 Mycobacterium_flavescens, 209 Mycobacterium_flavescens_2, 210 Mycobacterium_flavescens_3, 211 Mycobacterium_flavescens_4, 212 Mycobacterium_gastri, 213 Mycobacterium_gastri_2, 214 Mycobacterium_gastri_3, 215 Mycobacterium_gilvum, 216 Mycobacterium_gilvum_2, 217 Mycobacterium_gordonae, 218 Mycobacterium_intracellulare, 219 Mycobacterium_kansasii, 220 Mycobacterium_leprae, 221 Mycobacterium_leprae_2, 222 Mycobacterium_leprae_3, 223 Mycobacterium_leprae_4, 224 Mycobacterium_malmoense, 225 Mycobacterium_shimodei, 226 Mycobacterium_smegmatis, 227 Mycobacterium_smegmatis_2, 228 Mycobacterium_species, 229 Mycobacterium_species_2, 230 Mycobacterium_species_3, 231 Mycobacterium_species_4, 232 Mycobacterium_thermoresistibile, 233 Mycobacterium_tuberculosis, 234 Mycobacterium_tuberculosis_2, 235 Mycobacterium_tuberculosis_3, 236 Mycobacterium_tuberculosis_4, 237 Mycobacterium_tuberculosis_5, 238 Mycobacterium_tuberculosis_6, 239 Mycobacterium_tuberculosis_7, 240 Mycobacterium_vanbaalenii, 241 Mycobacterium_vanbaalenii_2, 242 Mycobacterium_xenopi, 243 Myxococcus_xanthus, 244 Natronomonas_pharaonis, 245 Natronomonas_pharaonis_2, 246 Natronomonas_pharaonis_3, 247 Natronomonas_pharaonis_4, 248 Neosartorya_aurata, 249 Neosartorya_fennelliae, 250 Neosartorya_fischeri, 251 Neosartorya_glabra, 252 Neosartorya_glabra_2, 253 Neosartorya_quadricincta, 254 Neosartorya_spinosa, 255 Nocardia_farcinica, 256 Nocardia_farcinica_2, 257 Nocardia_farcinica_3, 258 Nocardioides_sp_JS614, 259 Nocardioides_sp_JS6142, 260 Nostoc_punctiforme, 261 Nostoc_sp_PCC7120, 262 Nostoc_sp_PCC71202, 263 Paracoccidioides_brasiliensis, 264 Pelodictyon_luteolum, 265 Penicillium_chrysogenum, 266 Penicillium_expansum, 267 Penicillium_vulpinum, 268 Phaeosphaeria_nodorum, 269 Phaeosphaeria_nodorum_2, 270 Phycomyces_blakesleeanus, 271 Phycomyces_blakesleeanus_2, 272 Pichia_guilliermondii, 273 Pichia_guilliermondii_2, 274 Pichia_stipitis, 275 Picrophilus_torridus, 276 Podospora_anserina, 277 Podospora_anserina_2, 278 Polaromonas_naphthalenivorans, 279 Polaromonas_sp_JS666, 280 Polaromonas_sp_JS6662, 281 Polynucleobacter_sp_QLW_P1DMWA, 282 Porphyra_purpurea, 283 Porphyra_yezoensis, 284 Pseudomonas_aeruginosa_phage_phiEL, 285 Pseudomonas_aeruginosa_phage_phiEL2, 286 Pseudomonas_aeruginosa_phage_phiEL3, 287 Pseudomonas_aeruginosa_phage_phiEL4, 288 Pseudomonas_fluorescens, 289 Pseudomonas_sp_A1_1, 290 Pseudomonas_syringae, 291 'Pyrenophora tritici-repentis', 292 Pyrobaculum_arsenaticum, 293 Pyrococcus_abyssi, 294 Pyrococcus_abyssi_10, 295 Pyrococcus_abyssi_11, 296 Pyrococcus_abyssi_12, 297 Pyrococcus_abyssi_13, 298 Pyrococcus_abyssi_14, 299 Pyrococcus_abyssi_15, 300 Pyrococcus_abyssi_2, 301 Pyrococcus_abyssi_3, 302 Pyrococcus_abyssi_4, 303 Pyrococcus_abyssi_5, 304 Pyrococcus_abyssi_6, 305 Pyrococcus_abyssi_7, 306 Pyrococcus_abyssi_8, 307 Pyrococcus_abyssi_9, 308 Pyrococcus_furiosus, 309 Pyrococcus_furiosus_2, 310 Pyrococcus_furiosus_3, 311 Pyrococcus_furiosus_4, 312 Pyrococcus_furiosus_5, 313 Pyrococcus_furiosus_6, 314 Pyrococcus_furiosus_7, 315 Pyrococcus_furiosus_8, 316 Pyrococcus_furiosus_9, 317 Pyrococcus_horikoshii, 318 Pyrococcus_horikoshii_10, 319 Pyrococcus_horikoshii_11, 320 Pyrococcus_horikoshii_12, 321 Pyrococcus_horikoshii_13, 322 Pyrococcus_horikoshii_14, 323 Pyrococcus_horikoshii_2, 324 Pyrococcus_horikoshii_3, 325 Pyrococcus_horikoshii_4, 326 Pyrococcus_horikoshii_5, 327 Pyrococcus_horikoshii_6, 328 Pyrococcus_horikoshii_7, 329 Pyrococcus_horikoshii_8, 330 Pyrococcus_horikoshii_9, 331 Pyrococcus_sp_GB_D, 332 Rhodospirillum_centenum, 333 Rhodothermus_marinus, 334 Roseovarius_sp_217, 335 Saccharomyces_cariocanus, 336 Saccharomyces_castellii, 337 Saccharomyces_castellii_2, 338 Saccharomyces_cerevisiae, 339 Saccharomyces_cerevisiae_2, 340 Saccharomyces_cerevisiae_3, 341 Saccharomyces_cerevisiae_4, 342 Saccharomyces_cerevisiae_5, 343 Saccharomyces_dairenensis, 344 Saccharomyces_exiguus, 345 Saccharomyces_pastorianus, 346 Saccharomyces_unisporus, 347 Salinibacter_sp., 348 Salinibacter_ruber, 349 Salinibacter_ruber_2, 350 Salinispora_arenicola, 351 Salmonella_phage_SETP12, 352 Salmonella_phage_SETP3, 353 Salmonella_phage_SETP32, 354 Salmonella_phage_SETP5, 355 Salpingoeca_rosetta, 356 Schizosaccharomyces_japonicus, 357 Shigella_flexneri, 358 Spiromyces_aspiralis, 359 Spirulina_platensis, 360 Spizellomyces_punctatus, 361 Staphylococcus_epidermidis, 362 Staphylococcus_phage_Twort, 363 Staphylothermus_marinus, 364 Staphylothermus_marinus_2, 365 Stigeoclonium_helveticum, 366 Streptomyces_avermitilis, 367 Sulfurovum_sp_NBC37_1, 368 Synechococcus_elongatus, 369 Synechococcus_elongatus_2, 370 Synechococcus_sp_JA_2_3Ba, 371 Synechococcus_sp_JA_2_3Ba_2, 372 Synechococcus_sp_JA_3_3Ab, 373 Synechococcus_sp_JA_3_3Ab_2, 374 Synechocystis_sp_PCC6803, 375 Synechocystis_sp_PCC68032, 376 Synechocystis_sp_PCC68033, 377 Thermobifida_fusca, 378 Thermobifida_fusca_2, 379 Thermobifida_fusca_3, 380 Thermococcus_aggregans, 381 Thermococcus_aggregans_2, 382 Thermococcus_aggregans_3, 383 Thermococcus_barophilus, 384 Thermococcus_fumicolans, 385 Thermococcus_fumicolans_2, 386 Thermococcus_hydrothermalis, 387 Thermococcus_hydrothermalis_2, 388 Thermococcus_kodakaraensis, 389 Thermococcus_kodakaraensis_10, 390 Thermococcus_kodakaraensis_11, 391 Thermococcus_kodakaraensis_12, 392 Thermococcus_kodakaraensis_13, 393 Thermococcus_kodakaraensis_14, 394 Thermococcus_kodakaraensis_15, 395 Thermococcus_kodakaraensis_2, 396 Thermococcus_kodakaraensis_3, 397 Thermococcus_kodakaraensis_4, 398 Thermococcus_kodakaraensis_5, 399 Thermococcus_kodakaraensis_6, 400 Thermococcus_kodakaraensis_7, 401 Thermococcus_kodakaraensis_8, 402 Thermococcus_kodakaraensis_9, 403 Thermococcus_litoralis, 404 Thermococcus_litoralis_2, 405 Thermococcus_marinus, 406 Thermococcus_onnurineus, 407 Thermococcus_peptonophilus, 408 Thermococcus_sp_GE8, 409 Thermococcus_sp_GE82, 410 Thermococcus_sp_GT, 411 Thermococcus_sp_GT2, 412 Thermococcus_sp_OGL_20P, 413 Thermococcus_thioreducens, 414 Thermococcus_zilligii, 415 Thermodesulfovibrio_yellowstonii, 416 Thermodesulfovibrio_yellowstonii_2, 417 Thermoplasma_acidophilum, 418 Thermoplasma_acidophilum_2, 419 Thermoplasma_volcanium, 420 Thermus_thermophilus, 421 Thermus_thermophilus_2, 422 Thermus_thermophilus_3, 423 Thermus_thermophilus_4, 424 Thermus_thermophilus_5, 425 Thermus_thermophilus_6, 426 Thermus_thermophilus_7, 427 Thermus_thermophilus_8, 428 Torulaspora_globosa, 429 Torulaspora_pretoriensis, 430 Trichodesmium_erythraeum, 431 Trichodesmium_erythraeum_10, 432 Trichodesmium_erythraeum_11, 433 Trichodesmium_erythraeum_12, 434 Trichodesmium_erythraeum_13, 435 Trichodesmium_erythraeum_2, 436 Trichodesmium_erythraeum_3, 437 Trichodesmium_erythraeum_4, 438 Trichodesmium_erythraeum_5, 439 Trichodesmium_erythraeum_6, 440 Trichodesmium_erythraeum_7, 441 Trichodesmium_erythraeum_8, 442 Trichodesmium_erythraeum_9, 443 Uncinocarpus_reesii, 444 uncultured_archaeon_GZfos_10C7, 445 uncultured_archaeon_GZfos_13E1, 446 uncultured_archaeon_GZfos_9C4, 447 uncultured_archaeon_Rice_Cluster_I, 448 Vanderwaltozyma_polyspora, 449 Kluyveromyces_lactis_VMA, 450 Wiseana_iridescent_virus, 451 Zygosaccharomyces_bailii, 452 Zygosaccharomyces_bisporus, 453 Zygosaccharomyces_rouxii; TREE tree1 = ((((293:0.18542,317:0.05865)0.960:0.26578,((244:0.10608,(115:0.08004,((119:0.0,121:0.0):0.0924,130:0.28223)0.837:0.091)0.693:0.01902)0.736:0.03491,138:0.10278)0.978:0.29452)0.918:0.13837,(((126:0.482,(223:0.50958,((384:1.4E-4,(380:1.5E-4,174:0.18593)0.889:0.07041)0.342:1.6E-4,400:0.02252)0.994:0.67441)0.000:0.05899)0.837:0.17982,(432:1.23961,((135:1.96058,(326:0.19534,399:0.19377)0.791:0.27265)0.808:0.46476,(155:0.12217,169:0.0969)0.952:0.41805)0.193:0.03941)0.848:0.22698)0.869:0.2015,((((447:0.12143,(133:0.35469,(364:0.1882,395:0.16679)0.943:0.16498)0.755:0.04383)0.938:0.22795,(172:0.51158,(302:0.16471,(310:0.05876,(398:0.16199,325:0.05195)0.654:0.02454)0.964:0.2202)0.778:0.10317)0.980:0.40842)0.169:0.02837,(433:0.83679,158:0.33071)0.874:0.24104)0.906:0.1532,((180:0.23539,(323:0.13814,(300:0.0968,(388:0.10636,308:0.13591)0.499:0.04927)0.753:0.0571)0.955:0.26839)0.735:0.12146,((319:0.04304,392:0.15666)1.000:0.61083,(171:0.12644,(301:0.06916,(309:0.05275,(324:0.11579,397:0.02881)0.488:0.0573)0.858:0.08562)0.881:0.1525)0.922:0.19314)0.711:0.06142)0.873:0.13819)0.174:0.08152)0.730:0.0443)0.108:1.2E-4,((118:0.75466,(((1:0.14899,141:0.38882)0.970:0.50115,(382:1.5E-4,(404:0.13873,((387:0.0,411:0.0):2.9E-4,(409:0.04333,(385:0.02168,407:0.02148)0.193:1.4E-4)0.838:0.06514)0.025:0.02152)0.909:0.06582)0.856:0.24418)0.885:0.25732,(((363:0.45957,(159:0.21964,181:0.1217)0.893:0.29089)0.935:0.3271,(122:1.5E-4,124:0.16459)0.989:0.43984)0.689:0.06664,((7:0.43397,128:0.74381)0.809:0.25063,((179:0.84641,(((168:0.19031,(129:0.14852,247:0.04051)0.921:0.28599)0.987:0.41961,(162:0.05698,444:0.65813)0.752:0.0778)0.175:0.02641,164:0.5139)0.301:0.07701)0.680:0.15167,((154:0.10897,161:0.08741)0.983:0.293,(440:0.56921,(175:0.20471,(((408:0.0807,(406:0.06857,414:0.02771)0.587:0.01145)0.717:0.08007,(((405:0.05347,(412:0.0,413:0.0):0.15892)0.475:0.04229,(386:0.0,410:0.0):1.6E-4)0.828:0.0774,331:0.14961)0.899:0.10565)0.835:0.06832,((381:0.04659,403:1.5E-4)0.880:0.05673,(328:1.4E-4,401:0.12288)0.905:0.08664)0.789:0.04977)0.066:0.06811)0.968:0.32921)0.757:0.09186)0.733:0.06923)0.628:0.05066)0.868:0.20113)0.766:0.07561)0.866:0.18094)0.526:0.13128,(((275:0.18584,((417:0.0,418:0.0):0.11184,419:0.21364)0.783:0.07945)0.830:0.13496,((316:1.5E-4,(298:0.02229,321:0.02285)0.677:0.04553)0.946:0.3682,125:0.53364)0.823:0.20209)0.810:0.13859,((((312:0.0,330:0.0):1.6E-4,389:0.0673)0.709:0.02717,(306:0.26944,176:0.12613)0.778:0.06323)0.951:0.42484,(313:0.04502,(294:0.0224,390:0.11219)0.055:1.6E-4)0.998:0.88755)0.811:0.17877)0.383:0.05287)0.744:0.10303,((((((((34:0.0,37:0.0):0.50195,(166:0.49449,(322:1.5E-4,394:0.07068)0.812:0.12836)0.793:0.1991)0.723:0.10072,(167:0.53021,(97:0.44351,(160:0.03054,(153:0.11973,307:0.21571)0.735:0.07632)0.971:0.33454)0.406:0.10826)0.788:0.11953)0.810:0.08284,(((((242:0.10619,((229:0.0,231:0.0):0.06408,((((216:1.6E-4,241:0.06503)0.424:0.0445,221:0.21128)0.756:0.0215,(224:0.04439,217:0.09061)0.246:1.5E-4)0.795:0.02207,(208:0.02199,(219:1.5E-4,212:0.04494)0.000:1.5E-4)0.000:1.6E-4)0.814:0.05622)0.771:0.0602)0.986:0.43284,((127:0.55284,(422:1.4E-4,426:0.18965)0.967:0.49182)0.608:0.14054,62:0.71849)0.857:0.17928)0.799:0.09116,(362:0.53242,378:0.43714)0.797:0.14139)0.816:0.11935,243:0.47961)0.844:0.12959,((292:0.29985,(318:0.10639,(391:0.0124,(296:0.15735,314:0.14103)0.784:0.04818)0.994:0.50074)0.717:0.17069)0.838:0.13841,(((102:0.0,104:0.0):0.2231,(442:0.5374,((423:0.0,427:0.0):0.50691,((61:0.0,60:0.0):0.22435,264:0.14083)0.939:0.32268)0.843:0.15136)0.112:0.11283)0.026:0.00548,52:0.44814)0.871:0.11625)0.807:0.06128)0.879:0.12911)0.636:0.04573,(13:0.2428,(71:0.0,72:0.0,73:0.0,74:0.0):0.14415)0.983:0.28261)0.822:0.08302,((131:0.51786,((((204:0.0,205:0.0,234:0.0,235:0.0,236:0.0,237:0.0):0.178,(227:0.06368,255:0.06313)0.076:0.02341)0.879:0.08817,(145:0.19725,350:0.19927)0.802:0.0759)0.857:0.06878,((421:0.0,425:0.0):0.56641,((75:0.14899,(430:0.26807,140:0.0955)0.054:0.02827)0.945:0.21269,((90:0.34522,111:0.15705)0.816:0.10326,12:0.25658)0.756:0.07186)0.741:0.17082)0.784:0.06876)0.816:0.06995)0.768:0.06776,(435:0.16735,((333:0.0548,374:0.15615)0.727:0.02862,(98:0.06819,(191:0.18117,261:0.0907)0.144:0.03459)0.871:0.09002)0.821:0.09821)0.951:0.18304)0.816:0.06461)0.437:0.05347,(((((259:0.83151,((178:0.11577,(48:0.57636,((116:0.51536,(120:0.27937,134:0.40093)0.683:0.15116)0.919:0.26216,184:0.31166)0.290:0.0621)0.609:0.06216)0.949:0.29053,(347:0.86383,(((((44:0.18664,45:0.11738)0.865:0.18877,(57:0.25773,269:2.16558)0.614:0.28138)0.921:0.32908,((196:0.0,194:0.0):1.02073,(377:0.5964,(3:0.55925,416:0.80043)0.215:0.26045)0.736:0.27183)0.808:0.25475)0.531:0.08053,(16:0.6222,148:1.06785)0.730:0.23353)0.719:0.1226,((69:0.25551,(415:0.09236,(439:0.535,177:0.18883)0.870:0.16669)0.837:0.10416)0.956:0.24426,((((349:0.3643,245:0.42498)0.991:0.74887,(117:0.09933,246:0.03433)0.782:0.03994)0.756:0.04993,137:0.07453)0.996:0.41694,(((54:0.02628,55:0.018)0.844:0.09602,(56:0.02464,(365:0.16252,106:0.10118)0.742:0.12972)0.964:0.21464)0.822:0.1147,(68:0.46871,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END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 51; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 51; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Mk1 (est.)': 1 - 51; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1362099424173; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 3453683119115684919; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 4594788496526207285; mqVersion 275; checksumv 0 3 3808786666 null getNumChars 51 numChars 51 getNumTaxa 453 numTaxa 453 short false bits 1048575 states 1048575 sumSquaresStatesOnly 3.08129897795594E14 sumSquares 3.08129897795594E14 longCompressibleToShort false usingShortMatrix false NumFiles 1 NumMatrices 1 errorReportedDuringRun; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 286; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 883 464; setLocation 344 52; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #3453683119115684919 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #3453683119115684919; getWindow; tell It; newAssistant #mesquite.lists.DefaultTaxaOrder.DefaultTaxaOrder; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 597 397; setLocation 344 52; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.ibeam; endTell; setActive; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; endTell; end;