NEXUS
[File created by TreeBASE:  7/26/07  21:08:45]
[Matrix accession#: M2344]

BEGIN TAXA;
	TITLE M2344;
	DIMENSIONS  NTAX=7;
	TAXLABELS
		Leptosphaeria_maculans_brassicae	Leptosphaeria_maculans_lepidii	Leptosphaeria_biglobosa__brassicae	Leptosphaeria_biglobosa_canadensis	Leptosphaeria_biglobosa_australiensis	Leptosphaeria_biglobosa_erysimii	Leptosphaeria_biglobosa_thlaspii
	;
END;

BEGIN CHARACTERS;
	TITLE M2344;
	DIMENSIONS NCHAR=232;
	FORMAT DATATYPE = PROTEIN SYMBOLS = " 1 2 3 4 " MISSING = ? GAP = - ;
	MATRIX
		Leptosphaeria_maculans_brassicae            CWIIFRDAMHKKLKSENPSLTVQQISTRCSEIWHAFSPDEKKVWQTAAKNAKEEHSRQHPDYKYSPRKPGEKKKRQSRKAKQCKYAAASTVNTEFFDVQMTPDSSMMQSQMPLPELRRNYSIPATTHHGDMAHSFVNETVDFNATVDFNGADDFN------GSVDFNCSGNFN------EPAEFNSNIPKEPFAINEFHDAEALRHALLSYEFGGEVEAEAEAFHQLDVAED
		Leptosphaeria_maculans_lepidii              CWIIFRDAMHKKLKSEDPSLTVQQISTRCSEIWHAFSPDEKRVWQTAAKNAKEEHSRQHPDYKYSPRRPGEKKKRQSRKAKQRKHATASTVDTEVFDVQMTPDTSMMQ--MQLPGLQRNYSIPATTHLGDMAHPFVNEIADFDGAIDFNGAVDFNNAGDFNGSFDFNCSGNFNEVGDFNEPVEFTSNIPKEPFAINEFHDAEAPRHALLSDEF--EVEAEAEAFPQLDVAED
		Leptosphaeria_biglobosa__brassicae          CWIIFRDAMHKKLKSENSDLTVQDISSRCSQLWRSLSESEKKPWQTAAENAKEEHSRQHPDYKYSPRKPGQKKKRQSRKAKQ---AAASAARNEMFNMQMAPETNMMASQMQLP--QFDYTIPATTTLGDIANSFVGETAYFN------------------------------------DPSEFIGVLPQEEQSTDAFHDAEALRHARLEEEF--EAGIDIGNTLHLDVING
		Leptosphaeria_biglobosa_canadensis          CWIIFRDAMHKKLKSEDSDLTVQDISSRCSQLWRSLSESEKKPWQTAAENAKEEHSRQHPDYKYSPRKPGQKKKRQSRKAKQ---AAASAARTEIFNMQMAPETNMMASQMQLP--QFDYTIPATTTLGDIADSFVGEAAFFN------------------------------------DPAEFIGVLPQEEQSMDAFHDAEALRHARLEEEF--EAGIETGNTLHLDVING
		Leptosphaeria_biglobosa_australiensis       CWIIFMDAMHKKLKSENPDLTVQDISSRCSQVWRSLSESEKKPWQTAAENAKEEHSRQHPDYKYSPRKPGQKKKRQSRKAKQ---AAASAVGTEIFNMPMAPETNMMASQLPLP--QFDYTIPATTTLGDITDSFVGEAAYFN------------------------------------DPAEFIGVLPEEEQSTDAFHDAEALRHARLAEEF--EAETDTGNTLHLDLINT
		Leptosphaeria_biglobosa_erysimii            CWIIFRDAMAKKLKSEDADLSVQEISGRCSQVWRGLSEAEKKPWQTAAEHAKEEHFRQHPDYKYSPRKPGQKKKRQSRKAKQ---AAASAVGTEIFDMQMAPETNMMASQLPLP--QFDYTILATTTLSDITDSFVGEAAYFN------------------------------------DPAEFIGVLPQEEQSTDDFHDAEAVRHGRLEEEF--EAETETGNTLHLDIINT
		Leptosphaeria_biglobosa_thlaspii            CWIIFRDAMQKRLKSEDPEISVQEISTRCSQLWHGLSPSEKTPWQAAAKNAKEEHSRQHPDYKYSPRKPGEKKKRQSRKAAKR--AAASAVDSEVFTLPMTPDISMMLSQMPLPEFQFNFTTPATTTIGDMANSFVSEAAFHK------------------------------------DPAEFIGTVPQDELSMGDFYDAETLRHARLRAEF--EA--GTDKDLDLGVNGD
	;
END;

BEGIN CODONS;
CODESET * UNTITLED = Universal: all ; 
 END;

BEGIN ASSUMPTIONS;
OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS GAPMODE = NEWSTATE ; 
 END;