#NEXUS [written Mon Mar 11 11:56:43 HST 2013 by Mesquite version 2.75 (build 564) at dhcp-128-171-206-139.stjohn.hawaii.edu/128.171.206.139] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=7; TAXLABELS Botrytis_cinerea_B05.10 Botrytis_cinerea_T4 Botrytis_tulipae Fusarium_oxysporum Fusarium_verticillioides Fusarium_fujikuroi Aspergillus_carbonarius ; END; BEGIN CHARACTERS; TITLE 'Matrix in file "phylo_bik2_trial.nxs"'; DIMENSIONS NCHAR=1470; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Botrytis_cinerea_B05.10 ATG---GCCAAACCCAACCAACATTATGAGGTTATCATCGCCGGAGGAGGAATTGCTGGAGTGACGCTCGCGCTGATGTTTGAGAAACTCGGCATCAGCTATTTCCTCCTCGAGGGTCGCGATACTCTCGAGTCTGATAGAGGCGCTGGGATCGGTCTG------CAGCCAAATGGACTGCGTATCCTTGATCAGCTTGGCCTCGTGGAGGACATTGAGGAGGCAACTATACCACTTGAGAAGTGGTTCTCTTATGACAGCGAGGGTAACTTGATGAATGACTCTGACGCCATGGGCCAATATCGTGAGAAGATCGGATATCCTGTTGCCTTCATTGAGCGTCGCAAGCTTCTACCTATTATGGTTCGTCACATTAAACGCACAGAATGTGTCAGGACTTCAGCACGCGTGGCTTCAATTGAGGAGAGTGACGACCATGTCACTGTGACCACGACCGATGGATTGTCTCTTACCGCAGATATTGTTGTTGGTGCCGATGGCGTGCGAAGCGCTGTCCGCACACACATTGACTCCAAGCTTCCTGAAGCATTGACTGCAGATGACTTC------------------TATGGTATGTCAGCGCCCACTGAAGGCATCGCCCCCGGTGAACGCTTCGCCGTTTACCGAGAGAACCAAACAGTCATTGGCTTCACGGGCAAAGACGGCATTGTGTTCTGGTTTGTCTTCGAGAATCTCAACCACAACGTCCCTCTGTCTCAGGCCCCACGATACACCGAAGCTGAGGCCGAGGCTCTCTGCAAAAGCGTTGCCCATACACAGGTCACTCCAAAGCTGAAGTTTGGAGAGATCTACAAGAATCGTGTAGTGGCAGTCAAGATTGGTGTTGAAGAAGGCGTCGCGAAAGGATGGCACACTGATCGTGCTGTCATTGTCGGCGATGCAGCTTGTAAGACTACACCAGCTGGTGGACAGGGCGCTAACCAAGCCATTGAGTCATGCGCCGTCTTCGTCAACAAGCTCATCAAAGCCAAAAAGGCACGTCAGCCTGGTGAAAAGCTGTCTAGCGAGGCTGTCAAGTCCGTGCTCGCAAGCTATGCTCAAGAGCGTGCACAGCCAGCTACTACAGCCCTGGAAAGATCTCAAATGGTTGGCAAGGCGCTGTTATGCACTCCAGGGCCTGCAACTACTCTTGTAAAGGATATGTTGAAGCTCAGTAACGAAGACTGGCTTTTGCGTGCGTTTATGGCACTTTCTGCTGCGCCGTATTTGGAGGATGTTGAGCTTACGGCTAGAGGACATCTTTATAACAAGGCTGTTAAGGAAGCGCAGGCTGAGATGGCGAGACGCCAGAAGGTAGCGAAGGAGATTAAGGAGGCGGAAGAGAAAGAGAGTAAGCAGGCTGCGAGTATTCAAGAGTCTGAGCAGCGGAATGACTTTGCAGGTCTTCGAAATCCAGTTCAGGCAGCGACTGGAGTCGTTGAAGTTGGTTCT Botrytis_cinerea_T4 ATG---GCTGAACCAAACCAGCATTATGAAGTCATCATCGCCGGAGGAGGAATCGCTGGAGTCACTCTGGCGCTGATGTTTGAGAAACTCGGCATCAGCTATTTTCTCCTTGAGGGTCGTGATACTCTTGAGTCTGATCGAGGCGCTGGTATTGGTCTG------CAGCCGAATGGACTGCGTATTCTTGATCAACTGGGCCTCGTGGAGGATATTGAGGATGCTACTATTCCGCTTGAGAAGTGGTTCTCTTATGACAGTGAGGGGAACTTGATGAATGACTCTGACGCCATGGGTCAGTATCGTGAGAAGATTGGATATCCTGTTGCGTTCATTGAGCGCCGCAAGCTGCTGCCCATCATGGTTCGTCACATTCAGCGCACAGAATGTGTCAGGACTTCCGCGCGCGTTGCTTCAATTGAGGAGAGCGAGAACCATGTCACTGTGAGGACAACTGATGGCTTGTCTCTTACAGCAGACATCGTCGTTGGTGCTGATGGCGTGCGAAGTGCTGTACGCACACACATTGACTCAAAGCTTCTTGAACCATTGACTGCAGATGACTACGTTGCCTGCTCCACAGTCTACGGCATGTCAGCGCCCACCGAAGGAATCGCCCCAGGTGAACGCTTCGCTGTCTACCGAGAGAACCAAACAGTTATCGGCTTCACAGGCAAAGACGGAATTGTATTCTGGTTCGTCTTTGAGAACCTCAACCAGAACGTCCCGCTGTCTCAGGCTCCACGATACACTGAAGCTGAAGCCGAGGCTCTCTGCCTAAGCGTTGCTCACACGCAGGTCACCCCAAAGCTCAAGTTTGGCGAGATCTACAAGAACCGTGTAGTAGCTGTCAAGATTGGAGTTGAAGAAGGTGTCGCGAAGGGATGGCATACTGATCGCGCTGTCATTGTCGGCGACGCAGCTTGTAAGACTACACCGGCTGGTGGACAGGGCGCCAACCAGGCTATAGAGTCCTGCGCCGTGTTCGTCAACAAGCTCATGGCAGCTCGAAAGGCACTTCAGCCTGGCGAGAAGCTGTCTAGCGAGGCTACCAAGTCCATTCTCGCAGGCTATGCTCAAGAGCGCGCACAGCCAGCTACTACAGCCTTGGAAAGATCTCAAATGGTTGGCAAGGCACTTCTCTGCACGCCTGGTCCTGCAACTGCTCTTGTCAAAGACATGTTAAAGCTGAGTAACGAGGACTGGCTTTTGCGTGCGTTTATGGCACTTTCTGCTGCGCCGTATTTGGAGGATGTTGAGCTTACGGCTAGAGGACATCTTTATAACAAGGCTGTTGATGAAGCGAGGGCTGAGATGGCGAGACGTCAGAAGGTGGCAAAGGAGGTCAAGGAGGCCGAGGAGAAGGAGAGTCAACAGGCTGTGATTATGAAGGAGTCTGAGCAGAGGAATGAGTTTGTGGGACTTCGGAACCCGGTACAGGCAGCCACTGGTGTCGTCGAGGTTGGTTCT Botrytis_tulipae ATG---GCTGAACCAAACCAGCATTATGAAGTCATCATCGCTGGAGGAGGAATCGCTGGAGTTACTCTCGCGCTGATGTTTGAGAAACTCGACATCAGCTATTTCCTCCTCGAGGGTCGCGATACTCTTGAGTCTGATAGAGGCGCTGGTATTGGTCTG------CAGCCAAATGGCCTCCGTATTCTTGATCAGCTTGGTCTCGTGGAGGATATTGAGGAGGCTACTATTCCGCTTGAGAAGTGGTTCTCTTATGACAGCGAGGGGAACTTGATGAATGACTCTGACGCCATGGGTCAATATCGTGACAAGATCGGATATCCTGTTGCCTTCATTGAGCGCCGCAAGCTGCTACCTATCATGGTACGACACATTCAGCGCACAGAATGTGTTAAGACTTCAGCACGCGTTGCTTCAATTGAGGAGAGCGAGGACCATGTCACTGTTACAACAACAGACGGCTTGTCTCTTACTGCAGACATTGTCGTTGGTGCTGATGGCGTGCGAACGCTKGTACGCACACACATTGACTCAAAGCTGCCTGAACCATTGACTGCAGATGATTTAGTTGCCTGCTCCACAGTCTACGGCATGTCAGCACCCACCGAA-GTATCGCCCCCGGTGAACGCTTCGCCGTCTACCGAGAGAACCAAACAGTTATCGGCTTCACGGGCAAAGATGGAATCGTATTCTGGTTTGTATTTGAGAATCTGAACCGGAACGTCCCGCTCTCTCAGGCCCCGCGATACACTGAAGCTGAAGCAGAGGCTCTCTGTCTAAGCGTCGCTCATACACAGGTCACTCCCAAGCTCAAGTTTGGTGAGATCTACAAGAACAGTGTAGTGGCGGTCAAGATTGGCGTTGAAGAAGGTGTCGCGAAGGGCTGGCACACCGATCGCGCTGTGATTGTTGGCGATGCAGCTTGTAAGACTACACCGGCTGGTGGACAAGGCGCCAACCAGGCCATAGAGTCCTGCGCCGTCTTCGTCAACAAGCTCATGGCAGCGCGAAAGGCAAGCCAGTCAGGCGACAAGCTGTCTAGCGACGTCGTCAAGTCCGTACTCGCAAGCTATGCTCAGGAGCGCGCACAGCCAGCTACAACAGCCCTGGAGAGATCCCAAATGGTTGGAAAAGCACTGCTTTGCACTCCTGGACCTGCAACTACTCTTGTCAAAGACATGTTGAAGCTTAGTAACGAGGACTGGCTTTTGCGTGCCTTTATGGCACTTTCTGCTGCGCCGTATCTGGAGGATGTTGAGCTTACGGCTCGAGGGCATCTTTATAACAAGGCTGTTGAGGAGGCGCGGGCGGAGATGGCGAGACGGCAGAGGGTGGCCAAGGAGGTTAAGGAGGCGGAGGAGAAGGAGAGTAAACAGGCTGCGAGTATCAAGGAGTCTGAGCAGCGGAATGAGTTTGTGGGACTTCGGAATCCAGTGCAGGCAGCGACTGGGGTCGTTGAGGTTGGCTCT Fusarium_oxysporum ATG---GCCAAACCCGCCCAACATTATAAGGTCATGATTGCTGAAGGAGGAATTGCTGGAGTCACTCTCACGCTGATATTTGAGAAACTCGGCATCAGCTATTTCCTCCTCGAGAGTCGCGATACTCTCGAGTCTAACAGAGGCGCTAGTATTGGCCTG------TAGCCAAATGGACTTCGCATCCTAGATCAACTCGGTCTTCTGGAGGACATTGAGGAGGCTACTATACCACCTGAGAAGTGATTCTCTTATGATAGCAAGGGCAACCTGATGAATGATTCTAACGCTATGGGCCAACATCGTGAAAGGATCGGATATCCTATTGCCTTTGTTGAGTGTTGCAAGTTGTTACCTATTATAGTACGTCACATTTAGCGCACAGAATGTGTCAGAACTTCAGCACGCGTTGCTTCAATCGAGGAGAGTGACGATTATGTCACAGTCACAACAATCGACGGCCTGTCTCTTACAGCAGACATTGTTGTTGGTGCCGATGGCGTGCGAAGCACTGTCCGCATACAAATTGACTCAAATATTCCTGAAGAATTGACTGCAGATGACTGTGTTGCCTGCTCCACAGTCTATGGCATGTCAGCGCCCACCGAAGGCATCGCCTAGGGTGAGCGCTTTGCCGTTTACCGAGAGAACCAAACAGTCATCGGCTTCACAGGTAAAGATGGGATTGTATTCTGGCTCGTCTTTGAGAACCTCGGCCAGAACGTCCCATTTTCTCAGGTCCCACGATACACCGAAGCTGAGGCCGAGGCTCTCTGCCAAAGCGTTGCCTATATACAGGTCACTCCAAAGCTCAAGTTTGGAGGGATTTACAAGAACCGCGTTGTTGCTGTTAAGACTGGCGTTGAGGAAGGCGTCGCGAAAGGATGGCATACTGATCGCGCTATTATTGTTGGCGATGCAGCTTGTAAGGCTTTATCAGCTGGTGGACAAGGCGCCAGCCAAGTTATAGAGTTATGCGCTGTCTTCGTTAACAGTTTCATGAAAGCGAGAAAGGCTTGCTATCCTGGCGAGAAGCTGTCTAGCCAGGCAGTCAAGTCTATACTCGTAAGCTATGCTTAAGAGTGTGCACAGCCAGCTATTATAGCCTTAGAGAGATTTCAAATGGTTGGCAAGGCGCCTTTGTGCACTCTAGGATCTGTAATTACTTTTGTTAAGGATATGTTAAAGCTTAGTAACGAAGACTGGATTTTGCGTGTGTTTATGGCGCTTTCTGCTGCGCTGTATTTGGAGGATGTTGAGCTTACAGCTAGAGGACATTTTTACAATAAGGCTGTTAAGGAAGCGCAGGCAGAGATGGCGAGATGTCAGAAGGTAGCGAAGGAGGTCAAGGAGACGGAAGAGAAGGAGAGTAAGAAGGCTGTGAGTATTCAAGAGTCTAATCAGCGGAATAAGTTTGCGAGTCTTCGAAACCCAGTTCAGGTAGCGACTAGAGCCGTTGAGGTTGGCTCT Fusarium_verticillioides ATGG--GCCAAACCCGCCCAACATTATAAGGTCATGATTGCTGAAGGAGGAATTGCTGGAGTCACTCTCACGCTGATATTTGAGAAACTCGGCATCAGCTATTTCCTCCTCGAGAGTCGCGATACTCTCGAGTCTAACAGAGGCGCTAGTATTTGCCTG------TAGCCAAATGGACTTCGCATCCTAGATCAACTCGGTCTTATGGAGGACATTGAGGAGGCTATTATACCACTTGATAAGTGATTCTCTTATGATAGCAAGGGCAACCTGATGAATGATTCTAACGCTATGGGCCAATATCGTGAAAGGATCGGATATCCTATTGCCTTTATTGAGTGTTGCAAGCTGTTACCTATTATAGTACGTCACATTCAGCACACAGAATGTGTCAGGACTTCAGCACGCGTTGCTTCAATCGAGGAGAGTGACGATTATGTCACAGTCACAACAATCGACGGCCTATCTCTTACAGCAGACATAGTTGTTGGTGCCGATGGCGTGCGAAGCACTGTCCGCATACAAATTGACTCAAATCTTCCTGAAGCATTGACTGCAGATGACTGTGTTGCCTGCTCCACAGTCTATGGCATGTCAGCGCCCACCGAAGGCATCGCCTAGGGTGAGCGCTTTGCCGTTTACCGAGAGAACCAAACAGTCATCGGCTTCACAGGTAAAGATGGGATTGTATTCTGGCTCGTCTTTGAGAACCTCGGCCAGAACGTCCCATTTTCTCAGGTCCCACGATACACCGAAGCTGAGGCCGAGGCTCTCTGCCAAAGCGTTGCCTATATACAGGTCACTCCAAAGCTCAAGTTTGGAGGGATTTACAAGAACCGCGTTGTTGCTGTTAAGACTGGCGTTGAGGAAGGCGTCGCGAAAGGATGGCATACTGATCGCGCTATTATTGTTGGCGATGCAGCTTGTAAGGCTTTATCAGCTGGTGGACAAGGCGCCAGCCAAGTTATAGAGTTATGCGCTGTCTTCGTTAACAGTTTCATGAAAGCGAGAAAGGCTTGCTATCCTGGCGAGAAGCTGTCTAGCGAGCCAGTCAAGTCTATACTCGTAAGCTATGCTTAAGAGTGTGCACAGCCAGCTATTATAGCCTTAGAGAGATTTCAAATGGTTGGCAAGGCGCCTTTGTGCACTCTAGGATCTGTAATTACTTTTGTTAAGGATATGTTAAAGCTTAGTAACGAAGACTGGATTTTGCGTGTGTTTATGGCGCTTTCTGCTGCGCTGTATTTGGAGGATGTTGAGCTTACAGCTAGAGGACATCTTTACAATAAGGCTGTTAAGGAAGCGCAGGCAGAGATGGCGAGATGTCAGAAGGTAGCGAAGGAGGTCAAGGAGACGGAAGAGAAGGAGAGTAAGAAGGCTGTGAGTATTCAAGAGTCTAATCAGCGGAATAAGTTTGCGAGTCTTCGAAACCCAGTTCAGGTAGCGACTAGAGCCGTTGAGGTTGGCTCT Fusarium_fujikuroi ATG---GCCAAACCCGCCCAACACTATGAGGTCATCATCGCTGGCGGAGGAATTGCTGGAGTCACTCTCGCGCTGATGTTTGAGAAACTCGACATCAGCTATTTCCTCCTCGAGGGTCGCGATACTCTCGAGTCTGACAGAGGTGCTGGTATTGGTCTG------CAGCCAAATGGACTTCGCATCCTAGATCAACTCGGTCTTGTGGAGGACATTGAGGAGGCTACTATACCGCTTGAGAAGTGGTTCTCTTATGACAGCGAGGGCAACTTGATGAATGACTCTGACGCCATGGGCCAATATCGTGAGAAGATCGGATATCCTGTTGCCTTTATTGAGCGTCGCAAGCTGCTACCTATCATGGTACGTCAAATTCAGCGCACAGAATGTGTTAGGACTTCAGCACGCGTTCCTTCAATCGAGGAGAGTGGCGATCATGTCACAGTCACAACAACCGACGGCCTGTCTCTTACAGCAGACATTGTTGTTGGTGCCGATGGCGTGCGAAGCACTGTCCGCACACATATTGACTCAAAGCTTCCTGAAGCATTGACTGCAGATGACTGTGTTGCCTGCTCCACAGTCTATGGCATGTCAGCGCCCACCGAAGGCATCGCCCAGGGTGAGCGCGTTGCCGTTTACCGAGAGAATCAAACAGTCATTGGCTTCACAGGTAAAGACGGGATTGTATTCTGGTTCGTCTTTGAGAACCTCGGCCAGAACGTCCCATTGTCTCAGGCCCCACGATACACCGAAGCTGAGGCCGAGGCCTTCTGACAAAGCGTTGCCCATACACAGGTCACTCCAAAGCTCAAGGTTGGAGAGATCTACAAGAACCGCTTTGTTGCTGTCAAGATTGGCGTTGAGGAAGGCGTCGCAAAAGGATGGCACACCGATCGCGCTGTTATTGTTGGCGATGCAGCTTGTAAGACTACACCAGCTGGTGGACAAGGCGCCAACTAAGCCATAGAGTCATGCGCCGTCTTCGTCAACAAGCTCATGAAAGCGAGAAAGGCTTGCCATCCTGGCGAGAAGCTGTCTAGCGAGGCAGTCAAGTCTATACTCGTAAGCTATGCTCAAGAGCGCGCACAGCCAGCTACTACAGCCCTAGACAGATCTCAAATGGTTGGCAAGGCACTTTTGTGCACTCCAGGACCTGAAACTACTCTTGTCAAGGACATGTTAAAGCTTAGTAACGAAGACTGGCTTTTGCGTGCGTTTATGGCACTTTCTGCTGCGCCGTATTTGGAGGATGTTGAGCTTACGGCCAGAGGACATCTTTACAACAAGGCTGTTAAGGAAGCGCAGGCAGAGATGGCGAGACGTCAGAAGGTAGCGAAGGAGGTTAAGGAGGCGGAATAGAAGGAGAGTAAGAAGGCTGCGAGTATTCAAGAGTCTGCTCAGCGGAATGAGTTTGCGAGTCTTCGAAACCCATTGCAGGCGGCGACTGGAGTCGTTGAGGTTGGCTCT Aspergillus_carbonarius ATG---GCCGAGTCCAACGGTCATTTCCGAGTCGTCATTGTTGGTGGTGGGATTGCCGGCCTGACGCTTGCTTTGGCCTTTGAACGGCTCGGAATCAACTACGCTCTCCTCGAAGCCCGTGAGACGTTGGAACCGGAATATGGGGCTGGAGCTGGCGTGGGCCTGCAGCCTAACGGACTGCGCATCCTCGATCAACTCGGGCTGTTGGAGGAGATCGAGAAGCATACACTTCCCTTGGAGACATGGATGTCGTTGGATGCTAGCGGGAGGCTGCTCGCTACGTCTCGAACGATGAGCATGTATCGTTCCAGTCTCGGATACAGTATCATTTTTGTAGAGCGTCGGAAGCTCCTCCAGATTCTGTCAAGTCGTCTGAAAAATCGGGGGTCGATCCGGACATCTGCCTGCGTCGAATCGATCGAGGAAAGCGACGAACATGTCATAGTTCGCACCTCGGACGGTCTCTCCATCACCGCCGATGTGGTCGTGGGCGCCGACGGGGTCCGTAGTCGCGTCCGCAGTTTTATCGACAGGATGGTCCACAACGACGTCGATGACTGTATTGAT---------------------------------------------------CCGGGGGATCGCTTCACCGTCTATCGAGAAAAGGCAAACATCGTCGGGTTTGCCGGCAAAGATGGTGTCGTCTTCTGGTTTGTCTTTGAGCGTCTGGACCACTCCTACCCCTTGTCGATGTGTCCGCGATACACCGCAACCGATGCCGAGACGCTCTGCCAAACCGTGACCGACGTACAGATAACCCCGTCCGTGCGATTTGCAGACCTCTACACGAATCGCATCGTCGCTACCAAAATGGCTGCCGAAGAGGGCGTAGCCAGGACATGGCACACCCGCCGAACTGTTATCGTGGGTGACGCAGCACACAAGATGACCCCTGCCGGCGGCATGGGTGCCAATCAAGCCATCGAGTCGGTGGCCATCTTAGTAAACGAGATCATGAAAGCCGAGAACGCATCATCATCTAACCGAAGGCCTTCCCGCGAGTCGGTGCATTCAGCCCTAACACGGTACGCAGAACAGCGCATCCGAGAATCAGCCCCGGCTGTAGAGAGGTCGCGAACGATCTGCGAAGCGCTTTTCTGCAACGAAGGACCGGCAATTCCCAAGCTCAGACAAGCGTTTAGTCTATCAGATGAGGAGTTGCTATCCCGTGTACTGGCAGAATTTTCTCGTGCACCGATCTTGGAGAATCTTGCGCTTTCGCCTAGAGGGATCCAGTACGAGGAGATGGCTACCTCTGTGAAAGAGAGGACGATGGAGATCGCGATGGCCACTCAGCAGAACGGGCAGCTGTAG--------------------------------------------------------------------------------------------------------------- ; END; BEGIN TREES; Title 'Trees from "phylo_bik2_trial.nxs"'; LINK Taxa = Taxa; TRANSLATE 1 Botrytis_cinerea_B05.10, 2 Botrytis_cinerea_T4, 3 Botrytis_tulipae, 4 Fusarium_oxysporum, 5 Fusarium_verticillioides, 6 Fusarium_fujikuroi, 7 Aspergillus_carbonarius; TREE tree_1 = ((((1:0.007930106333753018,2:0.005138106471992754):0.07700336541142627,3:0.020246613416277537):0.018825187120260267,(4:0.053214994576323504,(5:0.06159629419493651,6:0.05917957541776331):0.04579042146416745):0.02672181456655931):0.42091238289486543,7:0.42091238289486543); END; BEGIN MacClade; Version 4.0 87; LastModified -849119582; FileSettings editor '0' '0' '1' '1'; Singles 000; Editor 11011001111111100100010010 '1' '12' Geneva '9' '100' '1' all; EditorPosition '44' '6' '707' '1227'; TreeWindowPosition '46' '6' '743' '1230'; ListWindow Characters closed Geneva '9' '50' '10' '129' '406' 000; ListWindow Taxa closed Geneva '9' '50' '10' '129' '353' 100000000; ListWindow Trees closed Geneva '9' '50' '10' '129' '379'; ListWindow TypeSets closed Geneva '9' '50' '10' '276' '490'; ListWindow WtSets closed Geneva '9' '50' '10' '276' '490'; ListWindow ExSets closed Geneva '9' '50' '10' '276' '490'; ListWindow CharSets closed Geneva '9' '50' '25' '129' '181'; ListWindow TaxSets closed Geneva '9' '50' '10' '276' '490'; ListWindow CharPartitions closed Geneva '9' '50' '10' '276' '490'; ListWindow CharPartNames closed Geneva '9' '50' '10' '276' '490'; ListWindow WtSets closed Geneva '9' '50' '10' '276' '490'; ChartWindowPosition '52' '30' '718' '1220'; StateNamesSymbols closed Geneva '9' '10' '50' '30' '148' '220'; WindowOrder Data; OtherSymbols & / 00 ? -; Correlation '0' '0' '1000' '0' '0' 10011010; Salmo 00000001; EditorFile '2'; ExportHTML _ MOSS '100' 110000; PrettyPrint 10; EditorToolsPosition '593' '46' '115' '165'; TreeToolsPosition '628' '9' '126' '138'; TreeWindowProgram 10; TreeWindow 0000; Continuous '0' '3' 1; Calculations 0000001; SummaryMode '0' '0' 0; Charts Geneva '9' ( normal ) 0010; NexusOptions '0' '0' '50' 001011011; TipLabel '1'; TreeFont Geneva '9' ( normal ); TreeShape 1.0 1.0 0100; TraceLabels 0101; ChartColors '0' '0' '65535' '9' '0' 1; ChartBiggestSpot 1; ChartPercent 10; ChartBarWidth '10' 1; ChartVerticalAxis 10101; ChartMinMax '0'; TraceAllChangesDisplay '1' 1; BarsOnBranchesDisplay '0' '0' '60000' '10000' '10000' '10000' '10000' '60000' '65000' '65000' '65000' '6' '1' 0000101; ContinuousBranchLabels 0; AllStatesBranchLabels 1; IndexNotation '2' 1; PrintTree 10.00 '2' '2' '2' '2' '2' '2' '2' '2' '2' '2' '2' Geneva '9' ( normal ) Geneva '10' ( normal ) Geneva '9' ( normal ) Geneva '9' ( normal ) Geneva '9' ( bold ) Geneva '9' ( normal ) Geneva '9' ( normal ) '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '1' '1' '1' '1' '0' '-12473' '-39' '4' '-40' '0' '1' '2' '1' '8' '0' '0' '0' '2' 1000111000000000000100000111000; MatchChar 00 .; EntryInterpretation 01; ColorOptions 00; TreeTools '0' '5' '4' '0' '10' '4' '0' 00100111111101110; EditorTools '0' '0' '0' '1000' '0' '0' '6' '3' '1' 100010101110011; PairAlign '2' '2' '3' '2' '1' '1' '2' '1' '3' 1010; BothTools '1'; END; BEGIN ASSUMPTIONS; OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS; TYPESET * UNTITLED = unord: 1 - 1470; END; BEGIN CODONS; CODONPOSSET * UNTITLED = 1: 1 - 1468\3, 2: 2 - 1469\3, 3: 3 - 1470\3; CODONPOSSET CodonPositions = 1: 1 - 1468\3, 2: 2 - 1469\3, 3: 3 - 1470\3; CODESET * UNTITLED = universal: 1 - 1470; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 1470; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1363039003481; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 1505754215486052199; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 3004100903423836879; mqVersion 275; checksumv 0 3 2208673394 null getNumChars 1470 numChars 1470 getNumTaxa 7 numTaxa 7 short true bits 2305843009213693967 states 15 sumSquaresStatesOnly 210770.0 sumSquares 210770.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState true false 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 700 464; setLocation 1373 186; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; desuppress; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #3004100903423836879 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 0 -67; setLocation 1373 186; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; getWindow; tell It; forceAutosize; endTell; hideWindow; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;